<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 02:29:43"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338553" ref_strand="+" ref_description="SGN-E338553 [cTOE-15-G17]">
      <seq>ttttgtccttgcagtggtgagatcgaaccacgtcgctagcaaggacatgggcatcgatcttgagtgttcatctttttccgattaagtccagatttttcaggaaaaggatcttatccagaagagggaagaatttttgaatggtgatggaaattctcagttctacccttttctcctcctttccaaaccctaatttccagctatttaagcggagatttctttcattgtgaaagagagaaggagaggggaagaaaaaagggtggggtttcttaaagattttcagggaaaacagagaaaattacataaaaaaaaaagaaatttctgaaaggaattataactagatatatagcgaaaagaaatcgaaagatcttagagaaattagtggggagtcgaagctttggttcagagccttcacttagtccctctgcttgcgaaaatcttttggagttgtcggaagtcgtctcaagcttgctactgtcccatttcgctgcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="+" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="1387" stop="2478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1687" g_stop="2178" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="+" ref_id="SGN-E338553" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1687" e_stop="2178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTCCTTGCAGTGGTGAGATCGAACCACGTCGCTAGCAAGGACATGGGCATCGATCTTGAGTGTTCATCTTTTTCCGATTAAGTCCAGATTTTTCAGGAAAAGGATCTTATCCAGAAGAGGGAAGAATTTTTGAATGGTGATGGAAATTCTCAGTTCTACCCTTTTCTCCTCCTTTCCAAACCCTAATTTCCAGCTATTTAAGCGGAGATTTCTTTCATTGTGAAAGAGAGAAGGAGAGGGGAAGAAAAAAGGGTGGGGTTTCTTAAAGATTTTCAGGGAAAACAGAGAAAATTACATAAAAAAAAAAGAAATTTCTGAAAGGAATTATAACTAGATATATAGCGAAAAGAAATCGAAAGATCTTAGAGAAATTAGTGGGGAGTCGAAGCTTTGGTTCAGAGCCTTCACTTAGTCCCTCTGCTTGCGAAAATCTTTTGGAGTTGTCGGAAGTCGTCTCAAGCTTGCTACTGTCCCATTTCGCTGCACTC</genome_strand>
        <mrna_strand>TTTTGTCCTTGCAGTGGTGAGATCGAACCACGTCGCTAGCAAGGACATGGGCATCGATCTTGAGTGTTCATCTTTTTCCGATTAAGTCCAGATTTTTCAGGAAAAGGATCTTATCCAGAAGAGGGAAGAATTTTTGAATGGTGATGGAAATTCTCAGTTCTACCCTTTTCTCCTCCTTTCCAAACCCTAATTTCCAGCTATTTAAGCGGAGATTTCTTTCATTGTGAAAGAGAGAAGGAGAGGGGAAGAAAAAAGGGTGGGGTTTCTTAAAGATTTTCAGGGAAAACAGAGAAAATTACATAAAAAAAAAAGAAATTTCTGAAAGGAATTATAACTAGATATATAGCGAAAAGAAATCGAAAGATCTTAGAGAAATTAGTGGGGAGTCGAAGCTTTGGTTCAGAGCCTTCACTTAGTCCCTCTGCTTGCGAAAATCTTTTGGAGTTGTCGGAAGTCGTCTCAAGCTTGCTACTGTCCCATTTCGCTGCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333016" ref_strand="+" ref_description="SGN-E333016 [cTOD-19-A23]">
      <seq>gagtttataccttaaagtttctctactttattttgaatccagctcagcataaactggtttcaaccatctgactcttctataaagcgaagtgccattcaaagactgataagttatctcctcaagaatctctcttgaaaactctccctcgtgtgagtaatagttgctatcctgaaggtggtctcaagacaagcaatgatgatgaaaatgctttggaattagtgtctgatctacttggttcatcaaagagttcggagaatttaccgcgttctcaagcgattgagataaacccatttcctacttcctctctgaggggtgtttgtgctaatcattcaggctttggtttaaatgatccttttagtctgaatctgatgaagaacctttgcttgacatgggttttggtcacacagcatcttttaacgaattcaggagttcattaccgccaatacaggtatgtcgttatttattctcaataaataaaggtatgttgtatatatcgccaactaggttcaatagttcgcaaattggtagagacacaaacatgaagataagataaatttcaacaaactaatttcactgtcttctagcagcagtatattgaaaattaatgtaataacataaagtttgctggacactccatttagacttaatttccttttggccaattgggaagatttgacacttattatgtactaatattttgaaaaaatgctttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="+" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="3243" stop="4556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3543" g_stop="4256" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="714" r_length="714" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="+" ref_id="SGN-E333016" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3543" e_stop="4256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTATACCTTAAAGTTTCTCTACTTTATTTTGAATCCAGCTCAGCATAAACTGGTTTCAACCATCTGACTCTTCTATAAAGCGAAGTGCCATTCAAAGACTGATAAGTTATCTCCTCAAGAATCTCTCTTGAAAACTCTCCCTCGTGTGAGTAATAGTTGCTATCCTGAAGGTGGTCTCAAGACAAGCAATGATGATGAAAATGCTTTGGAATTAGTGTCTGATCTACTTGGTTCATCAAAGAGTTCGGAGAATTTACCGCGTTCTCAAGCGATTGAGATAAACCCATTTCCTACTTCCTCTCTGAGGGGTGTTTGTGCTAATCATTCAGGCTTTGGTTTAAATGATCCTTTTAGTCTGAATCTGATGAAGAACCTTTGCTTGACATGGGTTTTGGTCACACAGCATCTTTTAACGAATTCAGGAGTTCATTACCGCCAATACAGGTATGTCGTTATTTATTCTCAATAAATAAAGGTATGTTGTATATATCGCCAACTAGGTTCAATAGTTCGCAAATTGGTAGAGACACAAACATGAAGATAAGATAAATTTCAACAAACTAATTTCACTGTCTTCTAGCAGCAGTATATTGAAAATTAATGTAATAACATAAAGTTTGCTGGACACTCCATTTAGACTTAATTTCCTTTTGGCCAATTGGGAAGATTTGACACTTATTATGTACTAATATTTTGTAAAAATGCTTTCT</genome_strand>
        <mrna_strand>GAGTTTATACCTTAAAGTTTCTCTACTTTATTTTGAATCCAGCTCAGCATAAACTGGTTTCAACCATCTGACTCTTCTATAAAGCGAAGTGCCATTCAAAGACTGATAAGTTATCTCCTCAAGAATCTCTCTTGAAAACTCTCCCTCGTGTGAGTAATAGTTGCTATCCTGAAGGTGGTCTCAAGACAAGCAATGATGATGAAAATGCTTTGGAATTAGTGTCTGATCTACTTGGTTCATCAAAGAGTTCGGAGAATTTACCGCGTTCTCAAGCGATTGAGATAAACCCATTTCCTACTTCCTCTCTGAGGGGTGTTTGTGCTAATCATTCAGGCTTTGGTTTAAATGATCCTTTTAGTCTGAATCTGATGAAGAACCTTTGCTTGACATGGGTTTTGGTCACACAGCATCTTTTAACGAATTCAGGAGTTCATTACCGCCAATACAGGTATGTCGTTATTTATTCTCAATAAATAAAGGTATGTTGTATATATCGCCAACTAGGTTCAATAGTTCGCAAATTGGTAGAGACACAAACATGAAGATAAGATAAATTTCAACAAACTAATTTCACTGTCTTCTAGCAGCAGTATATTGAAAATTAATGTAATAACATAAAGTTTGCTGGACACTCCATTTAGACTTAATTTCCTTTTGGCCAATTGGGAAGATTTGACACTTATTATGTACTAATATTTTGAAAAAATGCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694584" ref_strand="+" ref_description="SGN-E694584 [LH_Ea04E22](-)">
      <seq>taaagggtccccagggaagaatcaacagagctgtgtggggacccctgaataaaacaattataagtgctggtgaagatgctgtaatacgtatctgggatgctgagactggaaaggtactgaaggagtctgacaaggaaatcggtcataaaaagggtattacatcgctacaaaaatcagtggatggttcgcacttcattactggttctcttgataaatctgcaaagctctgggacatcagaagtttgacacttatcaagaactatacgaccgaacgacccgtgaatgctgtcacaatgtcgccgcttcttaatcatgtggttctgggaggtggtcaagacgcttcagctgtcaccactactgaccatcgtgctggaaagtttgaggccaagttctatgacaagattcttactgaagaaataggaggtgtcaaagggcattttggaccaataaatgctttggctttcaatcctgatgggaaaagttttgcaagtggtggtgaagatggatatgtgagattgcatcattttgaccaggattacttcaacatcaggatttagattttgttaggatcaggttttgtaagtttgttacttttcggtgttcagtagagaaggaggaggataattatgtctttcgtgttatctccattgaattttttgaatgcttttattgttgcaacctatgtttatcgcacgagaggaactaacattttatttctggacaagtagagcaaaacatatttactggatatttttagggcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="9714" stop="26"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9414" g_stop="9311" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9310" i_stop="9041" i_length="270">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9040" g_stop="8921" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="224" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8920" i_stop="8754" i_length="167">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8753" g_stop="8664" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="314" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8663" i_stop="8055" i_length="609">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8054" g_stop="7968" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="401" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7967" i_stop="7847" i_length="121">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7846" g_stop="7767" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="481" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7766" i_stop="6918" i_length="849">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6917" g_stop="6644" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="757" r_length="276" r_score="0.953"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6643" i_stop="6436" i_length="208">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.104" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="6435" g_stop="6417" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="758" r_stop="776" r_length="19" r_score="0.579"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E694584" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9414" e_stop="9311"/>
          <exon e_start="9040" e_stop="8921"/>
          <exon e_start="8753" e_stop="8664"/>
          <exon e_start="8054" e_stop="7968"/>
          <exon e_start="7846" e_stop="7767"/>
          <exon e_start="6917" e_stop="6644"/>
          <exon e_start="6435" e_stop="6417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAGGTACGTTAGTGTGTTTCAGCTTCATGGAAAATGTGCTGTCAATATGTCAAAGTTCGATAATATTTTGGGTTATTACTCTAGATACTTTATTTTATTATTATGAACAGTTTGGTGATTTATCAGGTCGCTTAGTTTTTGCATTATTTCACATCGCAGTATCTGCTTTGTTGTTTGCTTTGTCTTCCTTTCTTAAATATTAATTAGTTTTAAGATAGTTTTCCCTGTTCTTCGAAGCTAGTGTAATGTATTGACGGTCTTCCGAATTTGTAGACTGGAAAGGTACTGAAGGAGTCTGACAAAGAAATCGGTCATAAAAAGGGTATTACATCGCTACAAAAATCAGTGGATGGTTCGCACTTCATTACTGGTTCTCTTGATAAATCTGCAAAGGTAGCTCCTCATAGCCCTTGGAAATATGGCCATTGTTTCTTTATAAGTTCTTGCAACTACCTAGCAATATTTCATTTTGGATTTTCAGCTGCATATGTCCATATCCACTTTGTTTTTTTTTTCTTTTTAGAGTTCCTCTTTATTTCTAATCTCTGTCGATTTTCCAGCTCTGGGACATCAGAAGTTTGACACTTATCAAGAACTATACGACCGAACGACCCGTGAATGCTGTCACAATGTCGCCGCTTCTTAATCATGTATGTATTGACACTCATTAACTGATACATTGAATGGTTCTGATAGATAGCTTTTTAATCTGTTATCTTCTCCTATGTATTTTTCTTTTTTATTTTTGGTGGGGGTGGGGGGTGGTTGAAACAAGTTAAAATTTTTGAAATGTTCACGAAGTTACCTCCTTGAAGATAATAATGTCTTCGACTTGCAGCTCTTTTATGTTAATTATCAGTGTCCTGAATAAGATCTTTTAATCTCAAAAAGATATTTTAATGGGGAGTTACAAGTCCACTGTTACAAGAAATTGATTAAACCGTTGTACTGTGGTAGATCTTTAATCATTCGCAAGATAAGGGAACTTAATGCTCACTGTAACCAACATTGCTCATTACTGTTCAACATTTGATAAGGACACTTGAACTTAAATATCTTATGAAACAAAAGAGATGTTCTTCAAGAGTGTCTCATTACTGATTAAGAAAATAACTAAAAAGGACCGGATATGTGTTACTTTGAATCGGTTTGATGTTGCTAGTCTAAAGATTTGTTCTTCTGCAAGCAAAGTTTCTCCGAAGGATTCTGTAATGTTTCTTGATGTATCTCTCTAATCTAATGCTGCTCTTGGTCAATAGGTGGTTCTGGGAGGTGGTCAAGACGCTTCAGCTGTCACCACTACTGACCATCGTGCTGGAAAGTTTGAGGCCAAGTTCTATGACAAGGTAAGTGGATATATTTTGGTGTTAGGAATAATCTTCCCCCATCCTGAAAAAGAGAAAAAATGGATCTGATTTGGTTTCATTACATTTCGGAGTGTGTAATTTGTATCTGGATATGCATCAGATTCTTACTGAAGAAATAGGAGGTGTCAAAGGGCATTTTGGACCAATAAATGCTTTGGCTTTCAATCCTGATGGGAAAAGGTAATCATTCCACATTCCTGCCATCTCATATGCGGATGTCATGTACTTGTGCCATTATTGAAACTTGACTTTGTTTTCGTGTGGGCTCACGAGTTTTAGATTTTAATCCAATAATTTATTCTAAAAATTGTGTTCCTTTTCTTTATAGGTTCTAAGAAAACTCAACTTTTCTTGTTTTCTCATCTCGTTTTTGTAGTAGTACTACTTCCTCCGTGTGACAAAGATGAAGACACTCTTTATTAACAATTACATTTTATAAGAATGATAGTGAATCCTAATCCGTTTTTAGTCACACAAGTATAGTACTACTACTACTACCTCCATATGACAAAGATGAAGCTGTTCTTTATGAACAATTAAGTTTATAAGAATCATAGTGGTTCCTAATCAGTTTTTTTAGTCACATTGTTATTAACAATCGATGATAAAAGGTTCCTGCTTAAGAAAATGGTGGACTTATTTTAGGACAACTCAGATAGAAAATTAAGGCAACTGTTTTTGGATGGGTAGAGTGAAATTAGTTTGTTGGAATTTTTTGAACATGCAATTTTGTGCTAGTGTTGTATGCCCTTGATGGTTCTCTTTACTTCCTCTCCAAGTTTGTAGTAAGTTTTGGATCCTTCCAACTTAAAGGTGAAAACAGGAAAAGAAACATCATCTTTGAGTTATTTGAAGTTTTACATATTTAGTGTGTACTTGAGCAAAGGGAGAGTTTTTCGATCACAATGAATAACAAATTTCAGTAATGCTGATCATTTTCCAATTTGGACATGTTTAAAAAGCTGATTTGTTGGCGAAGTTAATTGGTTATTCCATCTCGAGTGTTGTGTGAATGTTTGATTTTTGCAGTTTTGCAAGTGGTGGTGAAGATGGATATGTGAGATTGCATCATTTTGACCAGGATTACTTCAACATCAGGATTTAGATTTTGATAGGATCAGGTTTTGCAAGTTTTGTTACTTTTCGGTGTTCAGTAGA-AA--AGGAGGATAATTATGTCTTTCCTGTTATCTCCATTGAATTTTTTGTATGCTTTTATTGTTGCAACCTATGTTCATCGCACGAGAGGAACTAACATTTTATTTCTGGACAAGTTGAGCAAAACATATTTACTGGATATTTTTAGGTGCAATTTTTTTCAAGCGTTTACTCTAGCATGATCAATTTATTCAAAAAGCAAAGTATATATCTTACCTTTTGATTGATCCTCTGCTCCTTGAAGCTTGACCATTGTTTCATAGCGCATTAAGTAAATGGTTTATCGGCAAATTTATTAGTAACTAAAACTCTTTTCTTTATATTATCACAATGGGGAAAACAAAATTAAATATTAGGTAACATATAAAGTAGAAA</genome_strand>
        <mrna_strand>TAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAG..............................................................................................................................................................................................................................................................................ACTGGAAAGGTACTGAAGGAGTCTGACAAGGAAATCGGTCATAAAAAGGGTATTACATCGCTACAAAAATCAGTGGATGGTTCGCACTTCATTACTGGTTCTCTTGATAAATCTGCAAAG.......................................................................................................................................................................CTCTGGGACATCAGAAGTTTGACACTTATCAAGAACTATACGACCGAACGACCCGTGAATGCTGTCACAATGTCGCCGCTTCTTAATCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTCTGGGAGGTGGTCAAGACGCTTCAGCTGTCACCACTACTGACCATCGTGCTGGAAAGTTTGAGGCCAAGTTCTATGACAAG.........................................................................................................................ATTCTTACTGAAGAAATAGGAGGTGTCAAAGGGCATTTTGGACCAATAAATGCTTTGGCTTTCAATCCTGATGGGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCAAGTGGTGGTGAAGATGGATATGTGAGATTGCATCATTTTGACCAGGATTACTTCAACATCAGGATTTAGATTTTGTTAGGATCAGGTTTTGTAAG-TTTGTTACTTTTCGGTGTTCAGTAGAGAAGGAGGAGGATAATTATGTCTTTCGTGTTATCTCCATTGAATTTTTTGAATGCTTTTATTGTTGCAACCTATGTTTATCGCACGAGAGGAACTAACATTTTATTTCTGGACAAGTAGAGCAAAACATATTTACTGGATATTTTTAG................................................................................................................................................................................................................GGCAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374652" ref_strand="-" ref_description="SGN-E374652 [TUS-15-L3]">
      <seq>attataagtgctggtgaagatgctgtaatacgtatctgggatgctgagactggaaaggtactgaaggagtctgacaaagaaatcggtcataaaaagggtattacatcgctacaaaaatcagtggatggttcgcacttcattactggttctcttgataaatctgcaaagctctgggacatcagaagtttgacacttatcaagaactatacgaccgaacgacccgtgaatgctgtcacaatgtcgccgcttcttaatcatgtggttctgggaggtggtcaagacgcttcagctgtcaccactactgaccatcgtgctggaaagtttgaggccaagttctatgacaagattcttactgaagaaataggaggtgtcaaagggcattttggaccaataaatgctttggctttcaatcctgatgggaaaagttttgcaagtggtggtgaagatggatatgtgagattgcatcattttgaccaggattacttcaacatcaggatttagattttgataggatcaggttttgcaagttttgttacttttcggtgttcagtagaaaaggaggataattatgtctttcctgttatctccattgaattttttgtatgcttttattgttgcaacctatgttcatcgcacgagaggaactaacattttatttctggacaagttgagcaaaacatatttactggatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="9658" stop="6348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9358" g_stop="9311" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9310" i_stop="9041" i_length="270">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9040" g_stop="8921" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="168" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8920" i_stop="8754" i_length="167">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8753" g_stop="8664" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="258" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8663" i_stop="8055" i_length="609">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8054" g_stop="7968" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="345" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7967" i_stop="7847" i_length="121">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7846" g_stop="7767" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="425" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7766" i_stop="6918" i_length="849">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6917" g_stop="6648" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="695" r_length="270" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E374652" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374652" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="9358" e_stop="9311"/>
          <exon e_start="9040" e_stop="8921"/>
          <exon e_start="8753" e_stop="8664"/>
          <exon e_start="8054" e_stop="7968"/>
          <exon e_start="7846" e_stop="7767"/>
          <exon e_start="6917" e_stop="6648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAGGTACGTTAGTGTGTTTCAGCTTCATGGAAAATGTGCTGTCAATATGTCAAAGTTCGATAATATTTTGGGTTATTACTCTAGATACTTTATTTTATTATTATGAACAGTTTGGTGATTTATCAGGTCGCTTAGTTTTTGCATTATTTCACATCGCAGTATCTGCTTTGTTGTTTGCTTTGTCTTCCTTTCTTAAATATTAATTAGTTTTAAGATAGTTTTCCCTGTTCTTCGAAGCTAGTGTAATGTATTGACGGTCTTCCGAATTTGTAGACTGGAAAGGTACTGAAGGAGTCTGACAAAGAAATCGGTCATAAAAAGGGTATTACATCGCTACAAAAATCAGTGGATGGTTCGCACTTCATTACTGGTTCTCTTGATAAATCTGCAAAGGTAGCTCCTCATAGCCCTTGGAAATATGGCCATTGTTTCTTTATAAGTTCTTGCAACTACCTAGCAATATTTCATTTTGGATTTTCAGCTGCATATGTCCATATCCACTTTGTTTTTTTTTTCTTTTTAGAGTTCCTCTTTATTTCTAATCTCTGTCGATTTTCCAGCTCTGGGACATCAGAAGTTTGACACTTATCAAGAACTATACGACCGAACGACCCGTGAATGCTGTCACAATGTCGCCGCTTCTTAATCATGTATGTATTGACACTCATTAACTGATACATTGAATGGTTCTGATAGATAGCTTTTTAATCTGTTATCTTCTCCTATGTATTTTTCTTTTTTATTTTTGGTGGGGGTGGGGGGTGGTTGAAACAAGTTAAAATTTTTGAAATGTTCACGAAGTTACCTCCTTGAAGATAATAATGTCTTCGACTTGCAGCTCTTTTATGTTAATTATCAGTGTCCTGAATAAGATCTTTTAATCTCAAAAAGATATTTTAATGGGGAGTTACAAGTCCACTGTTACAAGAAATTGATTAAACCGTTGTACTGTGGTAGATCTTTAATCATTCGCAAGATAAGGGAACTTAATGCTCACTGTAACCAACATTGCTCATTACTGTTCAACATTTGATAAGGACACTTGAACTTAAATATCTTATGAAACAAAAGAGATGTTCTTCAAGAGTGTCTCATTACTGATTAAGAAAATAACTAAAAAGGACCGGATATGTGTTACTTTGAATCGGTTTGATGTTGCTAGTCTAAAGATTTGTTCTTCTGCAAGCAAAGTTTCTCCGAAGGATTCTGTAATGTTTCTTGATGTATCTCTCTAATCTAATGCTGCTCTTGGTCAATAGGTGGTTCTGGGAGGTGGTCAAGACGCTTCAGCTGTCACCACTACTGACCATCGTGCTGGAAAGTTTGAGGCCAAGTTCTATGACAAGGTAAGTGGATATATTTTGGTGTTAGGAATAATCTTCCCCCATCCTGAAAAAGAGAAAAAATGGATCTGATTTGGTTTCATTACATTTCGGAGTGTGTAATTTGTATCTGGATATGCATCAGATTCTTACTGAAGAAATAGGAGGTGTCAAAGGGCATTTTGGACCAATAAATGCTTTGGCTTTCAATCCTGATGGGAAAAGGTAATCATTCCACATTCCTGCCATCTCATATGCGGATGTCATGTACTTGTGCCATTATTGAAACTTGACTTTGTTTTCGTGTGGGCTCACGAGTTTTAGATTTTAATCCAATAATTTATTCTAAAAATTGTGTTCCTTTTCTTTATAGGTTCTAAGAAAACTCAACTTTTCTTGTTTTCTCATCTCGTTTTTGTAGTAGTACTACTTCCTCCGTGTGACAAAGATGAAGACACTCTTTATTAACAATTACATTTTATAAGAATGATAGTGAATCCTAATCCGTTTTTAGTCACACAAGTATAGTACTACTACTACTACCTCCATATGACAAAGATGAAGCTGTTCTTTATGAACAATTAAGTTTATAAGAATCATAGTGGTTCCTAATCAGTTTTTTTAGTCACATTGTTATTAACAATCGATGATAAAAGGTTCCTGCTTAAGAAAATGGTGGACTTATTTTAGGACAACTCAGATAGAAAATTAAGGCAACTGTTTTTGGATGGGTAGAGTGAAATTAGTTTGTTGGAATTTTTTGAACATGCAATTTTGTGCTAGTGTTGTATGCCCTTGATGGTTCTCTTTACTTCCTCTCCAAGTTTGTAGTAAGTTTTGGATCCTTCCAACTTAAAGGTGAAAACAGGAAAAGAAACATCATCTTTGAGTTATTTGAAGTTTTACATATTTAGTGTGTACTTGAGCAAAGGGAGAGTTTTTCGATCACAATGAATAACAAATTTCAGTAATGCTGATCATTTTCCAATTTGGACATGTTTAAAAAGCTGATTTGTTGGCGAAGTTAATTGGTTATTCCATCTCGAGTGTTGTGTGAATGTTTGATTTTTGCAGTTTTGCAAGTGGTGGTGAAGATGGATATGTGAGATTGCATCATTTTGACCAGGATTACTTCAACATCAGGATTTAGATTTTGATAGGATCAGGTTTTGCAAGTTTTGTTACTTTTCGGTGTTCAGTAGAAAAGGAGGATAATTATGTCTTTCCTGTTATCTCCATTGAATTTTTTGTATGCTTTTATTGTTGCAACCTATGTTCATCGCACGAGAGGAACTAACATTTTATTTCTGGACAAGTTGAGCAAAACATATTTACTGGATATTT</genome_strand>
        <mrna_strand>ATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAG..............................................................................................................................................................................................................................................................................ACTGGAAAGGTACTGAAGGAGTCTGACAAAGAAATCGGTCATAAAAAGGGTATTACATCGCTACAAAAATCAGTGGATGGTTCGCACTTCATTACTGGTTCTCTTGATAAATCTGCAAAG.......................................................................................................................................................................CTCTGGGACATCAGAAGTTTGACACTTATCAAGAACTATACGACCGAACGACCCGTGAATGCTGTCACAATGTCGCCGCTTCTTAATCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTCTGGGAGGTGGTCAAGACGCTTCAGCTGTCACCACTACTGACCATCGTGCTGGAAAGTTTGAGGCCAAGTTCTATGACAAG.........................................................................................................................ATTCTTACTGAAGAAATAGGAGGTGTCAAAGGGCATTTTGGACCAATAAATGCTTTGGCTTTCAATCCTGATGGGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCAAGTGGTGGTGAAGATGGATATGTGAGATTGCATCATTTTGACCAGGATTACTTCAACATCAGGATTTAGATTTTGATAGGATCAGGTTTTGCAAGTTTTGTTACTTTTCGGTGTTCAGTAGAAAAGGAGGATAATTATGTCTTTCCTGTTATCTCCATTGAATTTTTTGTATGCTTTTATTGTTGCAACCTATGTTCATCGCACGAGAGGAACTAACATTTTATTTCTGGACAAGTTGAGCAAAACATATTTACTGGATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204815" ref_strand="-" ref_description="SGN-E204815 [cLEC-14-G18]">
      <seq>gacgcttcagctgtcaccactactgaccatcgtgctggaaagtttgaggccaagttctatgacaagattcttactgaagaaataggaggtgtcaaagggcattttggaccaataaatgctttggctttcaatcctgatgggaaaagttttgcaagtggtggtgaagatggatatgtgagattgcatcattttgaccaggattacttcaacatcaggatttagattttgataggatcaggttttgcaagttttgttacttttcggtgttcagtagaaaaggaggataattatgtctttcctgttatctccattgaattttttgtatgcttttattgttgcaacctatgttcatcgcacgagaggaactaacattttatttctggacaagttgagcaaaacatatttactggatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="8333" stop="6348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8033" g_stop="7968" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7967" i_stop="7847" i_length="121">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7846" g_stop="7767" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="146" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7766" i_stop="6918" i_length="849">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6917" g_stop="6648" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="416" r_length="270" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E204815" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204815" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8033" e_stop="7968"/>
          <exon e_start="7846" e_stop="7767"/>
          <exon e_start="6917" e_stop="6648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGCTTCAGCTGTCACCACTACTGACCATCGTGCTGGAAAGTTTGAGGCCAAGTTCTATGACAAGGTAAGTGGATATATTTTGGTGTTAGGAATAATCTTCCCCCATCCTGAAAAAGAGAAAAAATGGATCTGATTTGGTTTCATTACATTTCGGAGTGTGTAATTTGTATCTGGATATGCATCAGATTCTTACTGAAGAAATAGGAGGTGTCAAAGGGCATTTTGGACCAATAAATGCTTTGGCTTTCAATCCTGATGGGAAAAGGTAATCATTCCACATTCCTGCCATCTCATATGCGGATGTCATGTACTTGTGCCATTATTGAAACTTGACTTTGTTTTCGTGTGGGCTCACGAGTTTTAGATTTTAATCCAATAATTTATTCTAAAAATTGTGTTCCTTTTCTTTATAGGTTCTAAGAAAACTCAACTTTTCTTGTTTTCTCATCTCGTTTTTGTAGTAGTACTACTTCCTCCGTGTGACAAAGATGAAGACACTCTTTATTAACAATTACATTTTATAAGAATGATAGTGAATCCTAATCCGTTTTTAGTCACACAAGTATAGTACTACTACTACTACCTCCATATGACAAAGATGAAGCTGTTCTTTATGAACAATTAAGTTTATAAGAATCATAGTGGTTCCTAATCAGTTTTTTTAGTCACATTGTTATTAACAATCGATGATAAAAGGTTCCTGCTTAAGAAAATGGTGGACTTATTTTAGGACAACTCAGATAGAAAATTAAGGCAACTGTTTTTGGATGGGTAGAGTGAAATTAGTTTGTTGGAATTTTTTGAACATGCAATTTTGTGCTAGTGTTGTATGCCCTTGATGGTTCTCTTTACTTCCTCTCCAAGTTTGTAGTAAGTTTTGGATCCTTCCAACTTAAAGGTGAAAACAGGAAAAGAAACATCATCTTTGAGTTATTTGAAGTTTTACATATTTAGTGTGTACTTGAGCAAAGGGAGAGTTTTTCGATCACAATGAATAACAAATTTCAGTAATGCTGATCATTTTCCAATTTGGACATGTTTAAAAAGCTGATTTGTTGGCGAAGTTAATTGGTTATTCCATCTCGAGTGTTGTGTGAATGTTTGATTTTTGCAGTTTTGCAAGTGGTGGTGAAGATGGATATGTGAGATTGCATCATTTTGACCAGGATTACTTCAACATCAGGATTTAGATTTTGATAGGATCAGGTTTTGCAAGTTTTGTTACTTTTCGGTGTTCAGTAGAAAAGGAGGATAATTATGTCTTTCCTGTTATCTCCATTGAATTTTTTGTATGCTTTTATTGTTGCAACCTATGTTCATCGCACGAGAGGAACTAACATTTTATTTCTGGACAAGTTGAGCAAAACATATTTACTGGATATTT</genome_strand>
        <mrna_strand>GACGCTTCAGCTGTCACCACTACTGACCATCGTGCTGGAAAGTTTGAGGCCAAGTTCTATGACAAG.........................................................................................................................ATTCTTACTGAAGAAATAGGAGGTGTCAAAGGGCATTTTGGACCAATAAATGCTTTGGCTTTCAATCCTGATGGGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCAAGTGGTGGTGAAGATGGATATGTGAGATTGCATCATTTTGACCAGGATTACTTCAACATCAGGATTTAGATTTTGATAGGATCAGGTTTTGCAAGTTTTGTTACTTTTCGGTGTTCAGTAGAAAAGGAGGATAATTATGTCTTTCCTGTTATCTCCATTGAATTTTTTGTATGCTTTTATTGTTGCAACCTATGTTCATCGCACGAGAGGAACTAACATTTTATTTCTGGACAAGTTGAGCAAAACATATTTACTGGATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378148" ref_strand="-" ref_description="SGN-E378148 [TUS-21-P18]">
      <seq>gtcaccactactgaccatcgtgctggaaagtttgaggccaagttctatgacaagattcttactgaagaaataggaggtgtcaaagggcattttggaccaataaatgctttggctttcaatcctgatgggaaaagttttgcaagtggtggtgaagatggatatgtgagattgcatcattttgaccaggattacttcaacatcaggatttagattttgataggatcaggttttgcaagttttgttacttttcggtgttcagtagaaaaggaggataattatgtctttcctgttatctccattgaattttttgtatgcttttattgttgcaacctatgttcatcgcacgagagcaactaacgttttatttatggacaaattgagcaaatcatatttactgtatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="8321" stop="6348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8021" g_stop="7968" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7967" i_stop="7847" i_length="121">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7846" g_stop="7767" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="134" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7766" i_stop="6918" i_length="849">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6917" g_stop="6648" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="404" r_length="270" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E378148" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378148" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8021" e_stop="7968"/>
          <exon e_start="7846" e_stop="7767"/>
          <exon e_start="6917" e_stop="6648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACCACTACTGACCATCGTGCTGGAAAGTTTGAGGCCAAGTTCTATGACAAGGTAAGTGGATATATTTTGGTGTTAGGAATAATCTTCCCCCATCCTGAAAAAGAGAAAAAATGGATCTGATTTGGTTTCATTACATTTCGGAGTGTGTAATTTGTATCTGGATATGCATCAGATTCTTACTGAAGAAATAGGAGGTGTCAAAGGGCATTTTGGACCAATAAATGCTTTGGCTTTCAATCCTGATGGGAAAAGGTAATCATTCCACATTCCTGCCATCTCATATGCGGATGTCATGTACTTGTGCCATTATTGAAACTTGACTTTGTTTTCGTGTGGGCTCACGAGTTTTAGATTTTAATCCAATAATTTATTCTAAAAATTGTGTTCCTTTTCTTTATAGGTTCTAAGAAAACTCAACTTTTCTTGTTTTCTCATCTCGTTTTTGTAGTAGTACTACTTCCTCCGTGTGACAAAGATGAAGACACTCTTTATTAACAATTACATTTTATAAGAATGATAGTGAATCCTAATCCGTTTTTAGTCACACAAGTATAGTACTACTACTACTACCTCCATATGACAAAGATGAAGCTGTTCTTTATGAACAATTAAGTTTATAAGAATCATAGTGGTTCCTAATCAGTTTTTTTAGTCACATTGTTATTAACAATCGATGATAAAAGGTTCCTGCTTAAGAAAATGGTGGACTTATTTTAGGACAACTCAGATAGAAAATTAAGGCAACTGTTTTTGGATGGGTAGAGTGAAATTAGTTTGTTGGAATTTTTTGAACATGCAATTTTGTGCTAGTGTTGTATGCCCTTGATGGTTCTCTTTACTTCCTCTCCAAGTTTGTAGTAAGTTTTGGATCCTTCCAACTTAAAGGTGAAAACAGGAAAAGAAACATCATCTTTGAGTTATTTGAAGTTTTACATATTTAGTGTGTACTTGAGCAAAGGGAGAGTTTTTCGATCACAATGAATAACAAATTTCAGTAATGCTGATCATTTTCCAATTTGGACATGTTTAAAAAGCTGATTTGTTGGCGAAGTTAATTGGTTATTCCATCTCGAGTGTTGTGTGAATGTTTGATTTTTGCAGTTTTGCAAGTGGTGGTGAAGATGGATATGTGAGATTGCATCATTTTGACCAGGATTACTTCAACATCAGGATTTAGATTTTGATAGGATCAGGTTTTGCAAGTTTTGTTACTTTTCGGTGTTCAGTAGAAAAGGAGGATAATTATGTCTTTCCTGTTATCTCCATTGAATTTTTTGTATGCTTTTATTGTTGCAACCTATGTTCATCGCACGAGAGGAACTAACATTTTATTTCTGGACAAGTTGAGCAAAACATATTTACTGGATATTT</genome_strand>
        <mrna_strand>GTCACCACTACTGACCATCGTGCTGGAAAGTTTGAGGCCAAGTTCTATGACAAG.........................................................................................................................ATTCTTACTGAAGAAATAGGAGGTGTCAAAGGGCATTTTGGACCAATAAATGCTTTGGCTTTCAATCCTGATGGGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCAAGTGGTGGTGAAGATGGATATGTGAGATTGCATCATTTTGACCAGGATTACTTCAACATCAGGATTTAGATTTTGATAGGATCAGGTTTTGCAAGTTTTGTTACTTTTCGGTGTTCAGTAGAAAAGGAGGATAATTATGTCTTTCCTGTTATCTCCATTGAATTTTTTGTATGCTTTTATTGTTGCAACCTATGTTCATCGCACGAGAGCAACTAACGTTTTATTTATGGACAAATTGAGCAAATCATATTTACTGTATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715723" ref_strand="+" ref_description="SGN-E715723 [FB15AD04]">
      <seq>agaagtttgacacttatcaagaactatacgaccgaacgacccgtgaatgctgtcacaatgtcgccgcttcttaatcatgtggttctgggaggtggtcaagacgcttcagctgtcaccactactgaccatcgtgctggaaagtttgaggccaagttctatgacaagattcttactgaagaaataggaggtgtcaaagggcattttggaccaataaatgctttggctttcaatcctgatgggaaaagttttgcaagtggtggtgaagatggatatgtgagattgcatcattttgaccaggattacttcaacatcaggatttagattttgataggatcaggttttgcaagttttgttacttttcggtgttcagtagaaaaggaggataattatgtctttcctgttatctccattgaattttttgtatgcttttattgttgcaacctatgttcatcgcacgagaggaactaacattttatttctggacaagttgagcaaaacatatttactggaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="9041" stop="6351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8741" g_stop="8664" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8663" i_stop="8055" i_length="609">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8054" g_stop="7968" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="165" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7967" i_stop="7847" i_length="121">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7846" g_stop="7767" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="245" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7766" i_stop="6918" i_length="849">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6917" g_stop="6654" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="509" r_length="264" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="510" polyA_stop="523"/>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E715723" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8741" e_stop="8664"/>
          <exon e_start="8054" e_stop="7968"/>
          <exon e_start="7846" e_stop="7767"/>
          <exon e_start="6917" e_stop="6654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTTTGACACTTATCAAGAACTATACGACCGAACGACCCGTGAATGCTGTCACAATGTCGCCGCTTCTTAATCATGTATGTATTGACACTCATTAACTGATACATTGAATGGTTCTGATAGATAGCTTTTTAATCTGTTATCTTCTCCTATGTATTTTTCTTTTTTATTTTTGGTGGGGGTGGGGGGTGGTTGAAACAAGTTAAAATTTTTGAAATGTTCACGAAGTTACCTCCTTGAAGATAATAATGTCTTCGACTTGCAGCTCTTTTATGTTAATTATCAGTGTCCTGAATAAGATCTTTTAATCTCAAAAAGATATTTTAATGGGGAGTTACAAGTCCACTGTTACAAGAAATTGATTAAACCGTTGTACTGTGGTAGATCTTTAATCATTCGCAAGATAAGGGAACTTAATGCTCACTGTAACCAACATTGCTCATTACTGTTCAACATTTGATAAGGACACTTGAACTTAAATATCTTATGAAACAAAAGAGATGTTCTTCAAGAGTGTCTCATTACTGATTAAGAAAATAACTAAAAAGGACCGGATATGTGTTACTTTGAATCGGTTTGATGTTGCTAGTCTAAAGATTTGTTCTTCTGCAAGCAAAGTTTCTCCGAAGGATTCTGTAATGTTTCTTGATGTATCTCTCTAATCTAATGCTGCTCTTGGTCAATAGGTGGTTCTGGGAGGTGGTCAAGACGCTTCAGCTGTCACCACTACTGACCATCGTGCTGGAAAGTTTGAGGCCAAGTTCTATGACAAGGTAAGTGGATATATTTTGGTGTTAGGAATAATCTTCCCCCATCCTGAAAAAGAGAAAAAATGGATCTGATTTGGTTTCATTACATTTCGGAGTGTGTAATTTGTATCTGGATATGCATCAGATTCTTACTGAAGAAATAGGAGGTGTCAAAGGGCATTTTGGACCAATAAATGCTTTGGCTTTCAATCCTGATGGGAAAAGGTAATCATTCCACATTCCTGCCATCTCATATGCGGATGTCATGTACTTGTGCCATTATTGAAACTTGACTTTGTTTTCGTGTGGGCTCACGAGTTTTAGATTTTAATCCAATAATTTATTCTAAAAATTGTGTTCCTTTTCTTTATAGGTTCTAAGAAAACTCAACTTTTCTTGTTTTCTCATCTCGTTTTTGTAGTAGTACTACTTCCTCCGTGTGACAAAGATGAAGACACTCTTTATTAACAATTACATTTTATAAGAATGATAGTGAATCCTAATCCGTTTTTAGTCACACAAGTATAGTACTACTACTACTACCTCCATATGACAAAGATGAAGCTGTTCTTTATGAACAATTAAGTTTATAAGAATCATAGTGGTTCCTAATCAGTTTTTTTAGTCACATTGTTATTAACAATCGATGATAAAAGGTTCCTGCTTAAGAAAATGGTGGACTTATTTTAGGACAACTCAGATAGAAAATTAAGGCAACTGTTTTTGGATGGGTAGAGTGAAATTAGTTTGTTGGAATTTTTTGAACATGCAATTTTGTGCTAGTGTTGTATGCCCTTGATGGTTCTCTTTACTTCCTCTCCAAGTTTGTAGTAAGTTTTGGATCCTTCCAACTTAAAGGTGAAAACAGGAAAAGAAACATCATCTTTGAGTTATTTGAAGTTTTACATATTTAGTGTGTACTTGAGCAAAGGGAGAGTTTTTCGATCACAATGAATAACAAATTTCAGTAATGCTGATCATTTTCCAATTTGGACATGTTTAAAAAGCTGATTTGTTGGCGAAGTTAATTGGTTATTCCATCTCGAGTGTTGTGTGAATGTTTGATTTTTGCAGTTTTGCAAGTGGTGGTGAAGATGGATATGTGAGATTGCATCATTTTGACCAGGATTACTTCAACATCAGGATTTAGATTTTGATAGGATCAGGTTTTGCAAGTTTTGTTACTTTTCGGTGTTCAGTAGAAAAGGAGGATAATTATGTCTTTCCTGTTATCTCCATTGAATTTTTTGTATGCTTTTATTGTTGCAACCTATGTTCATCGCACGAGAGGAACTAACATTTTATTTCTGGACAAGTTGAGCAAAACATATTTACTGG</genome_strand>
        <mrna_strand>AGAAGTTTGACACTTATCAAGAACTATACGACCGAACGACCCGTGAATGCTGTCACAATGTCGCCGCTTCTTAATCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTCTGGGAGGTGGTCAAGACGCTTCAGCTGTCACCACTACTGACCATCGTGCTGGAAAGTTTGAGGCCAAGTTCTATGACAAG.........................................................................................................................ATTCTTACTGAAGAAATAGGAGGTGTCAAAGGGCATTTTGGACCAATAAATGCTTTGGCTTTCAATCCTGATGGGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCAAGTGGTGGTGAAGATGGATATGTGAGATTGCATCATTTTGACCAGGATTACTTCAACATCAGGATTTAGATTTTGATAGGATCAGGTTTTGCAAGTTTTGTTACTTTTCGGTGTTCAGTAGAAAAGGAGGATAATTATGTCTTTCCTGTTATCTCCATTGAATTTTTTGTATGCTTTTATTGTTGCAACCTATGTTCATCGCACGAGAGGAACTAACATTTTATTTCTGGACAAGTTGAGCAAAACATATTTACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419172" ref_strand="-" ref_description="SGN-E419172 [STM-29-I13]">
      <seq>aacaattataagtgctggtgaagatgctgtaatacgtatctgggatgctgagactggaaagatactgaaggagtctgataaggaaatcggtcataaaaagggtattacgtcactacaaaaatcagtggatggttcacacttcattactggttctcttgataaatctgcgaagctctgggacatcagaactttgacacttatcaagaactatacgaccgaacgaccagtgaatgccgtcactatgtcgccgcttcttaatcatgtggttttgggaggtggtcaagacgcttcagctgtcaccactactgatcatcgtgctggaaagtttgaggccaagttctatgacaagattcttactgaagaaataggaggtgttaaagggcattttggaccaataaatgctttggctttcaaccctgatgggaaaagtttcgcaagtggtggtgaagatggatacgtgagattgcatcattttgaccaggattacttcaacatcaagatttagattttgataggaccaggtttgtacttttgggtatgatggacattgacgtttctctggaggaagcgtctttccggttatctcccatgaatattttgtatgcttttattgttgcaacctatgttcatcgcacaagagaaactaacattttatttccggacaagttgagcaaaacatatttacttaggtgcaattttttcaagtttgcacttgcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="9662" stop="6306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9362" g_stop="9311" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9310" i_stop="9041" i_length="270">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9040" g_stop="8921" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="172" r_length="120" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8920" i_stop="8754" i_length="167">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8753" g_stop="8664" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="262" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8663" i_stop="8055" i_length="609">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8054" g_stop="7968" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="349" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7967" i_stop="7847" i_length="121">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7846" g_stop="7767" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="429" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7766" i_stop="6918" i_length="849">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6917" g_stop="6656" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="686" r_length="257" r_score="0.851"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="719" polyA_stop="729"/>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E419172" ref_strand="-">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419172" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="9362" e_stop="9311"/>
          <exon e_start="9040" e_stop="8921"/>
          <exon e_start="8753" e_stop="8664"/>
          <exon e_start="8054" e_stop="7968"/>
          <exon e_start="7846" e_stop="7767"/>
          <exon e_start="6917" e_stop="6656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAGGTACGTTAGTGTGTTTCAGCTTCATGGAAAATGTGCTGTCAATATGTCAAAGTTCGATAATATTTTGGGTTATTACTCTAGATACTTTATTTTATTATTATGAACAGTTTGGTGATTTATCAGGTCGCTTAGTTTTTGCATTATTTCACATCGCAGTATCTGCTTTGTTGTTTGCTTTGTCTTCCTTTCTTAAATATTAATTAGTTTTAAGATAGTTTTCCCTGTTCTTCGAAGCTAGTGTAATGTATTGACGGTCTTCCGAATTTGTAGACTGGAAAGGTACTGAAGGAGTCTGACAAAGAAATCGGTCATAAAAAGGGTATTACATCGCTACAAAAATCAGTGGATGGTTCGCACTTCATTACTGGTTCTCTTGATAAATCTGCAAAGGTAGCTCCTCATAGCCCTTGGAAATATGGCCATTGTTTCTTTATAAGTTCTTGCAACTACCTAGCAATATTTCATTTTGGATTTTCAGCTGCATATGTCCATATCCACTTTGTTTTTTTTTTCTTTTTAGAGTTCCTCTTTATTTCTAATCTCTGTCGATTTTCCAGCTCTGGGACATCAGAAGTTTGACACTTATCAAGAACTATACGACCGAACGACCCGTGAATGCTGTCACAATGTCGCCGCTTCTTAATCATGTATGTATTGACACTCATTAACTGATACATTGAATGGTTCTGATAGATAGCTTTTTAATCTGTTATCTTCTCCTATGTATTTTTCTTTTTTATTTTTGGTGGGGGTGGGGGGTGGTTGAAACAAGTTAAAATTTTTGAAATGTTCACGAAGTTACCTCCTTGAAGATAATAATGTCTTCGACTTGCAGCTCTTTTATGTTAATTATCAGTGTCCTGAATAAGATCTTTTAATCTCAAAAAGATATTTTAATGGGGAGTTACAAGTCCACTGTTACAAGAAATTGATTAAACCGTTGTACTGTGGTAGATCTTTAATCATTCGCAAGATAAGGGAACTTAATGCTCACTGTAACCAACATTGCTCATTACTGTTCAACATTTGATAAGGACACTTGAACTTAAATATCTTATGAAACAAAAGAGATGTTCTTCAAGAGTGTCTCATTACTGATTAAGAAAATAACTAAAAAGGACCGGATATGTGTTACTTTGAATCGGTTTGATGTTGCTAGTCTAAAGATTTGTTCTTCTGCAAGCAAAGTTTCTCCGAAGGATTCTGTAATGTTTCTTGATGTATCTCTCTAATCTAATGCTGCTCTTGGTCAATAGGTGGTTCTGGGAGGTGGTCAAGACGCTTCAGCTGTCACCACTACTGACCATCGTGCTGGAAAGTTTGAGGCCAAGTTCTATGACAAGGTAAGTGGATATATTTTGGTGTTAGGAATAATCTTCCCCCATCCTGAAAAAGAGAAAAAATGGATCTGATTTGGTTTCATTACATTTCGGAGTGTGTAATTTGTATCTGGATATGCATCAGATTCTTACTGAAGAAATAGGAGGTGTCAAAGGGCATTTTGGACCAATAAATGCTTTGGCTTTCAATCCTGATGGGAAAAGGTAATCATTCCACATTCCTGCCATCTCATATGCGGATGTCATGTACTTGTGCCATTATTGAAACTTGACTTTGTTTTCGTGTGGGCTCACGAGTTTTAGATTTTAATCCAATAATTTATTCTAAAAATTGTGTTCCTTTTCTTTATAGGTTCTAAGAAAACTCAACTTTTCTTGTTTTCTCATCTCGTTTTTGTAGTAGTACTACTTCCTCCGTGTGACAAAGATGAAGACACTCTTTATTAACAATTACATTTTATAAGAATGATAGTGAATCCTAATCCGTTTTTAGTCACACAAGTATAGTACTACTACTACTACCTCCATATGACAAAGATGAAGCTGTTCTTTATGAACAATTAAGTTTATAAGAATCATAGTGGTTCCTAATCAGTTTTTTTAGTCACATTGTTATTAACAATCGATGATAAAAGGTTCCTGCTTAAGAAAATGGTGGACTTATTTTAGGACAACTCAGATAGAAAATTAAGGCAACTGTTTTTGGATGGGTAGAGTGAAATTAGTTTGTTGGAATTTTTTGAACATGCAATTTTGTGCTAGTGTTGTATGCCCTTGATGGTTCTCTTTACTTCCTCTCCAAGTTTGTAGTAAGTTTTGGATCCTTCCAACTTAAAGGTGAAAACAGGAAAAGAAACATCATCTTTGAGTTATTTGAAGTTTTACATATTTAGTGTGTACTTGAGCAAAGGGAGAGTTTTTCGATCACAATGAATAACAAATTTCAGTAATGCTGATCATTTTCCAATTTGGACATGTTTAAAAAGCTGATTTGTTGGCGAAGTTAATTGGTTATTCCATCTCGAGTGTTGTGTGAATGTTTGATTTTTGCAGTTTTGCAAGTGGTGGTGAAGATGGATATGTGAGATTGCATCATTTTGACCAGGATTACTTCAACATCAGGATTTAGATTTTGATAGGATCAGGTTTTGCAAGTTTTGTTACTTTTCGGTGTTCA-GTAGAAAAGGAGGATAATTATGTCTTTCCTGTTATCTCCATTGAATTTTTTGTATGCTTTTATTGTTGCAACCTATGTTCATCGCACGAGAGGAACTAACATTTTATTTCTGGACAAGTTGAGCAAAACATATTTACT</genome_strand>
        <mrna_strand>AACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAG..............................................................................................................................................................................................................................................................................ACTGGAAAGATACTGAAGGAGTCTGATAAGGAAATCGGTCATAAAAAGGGTATTACGTCACTACAAAAATCAGTGGATGGTTCACACTTCATTACTGGTTCTCTTGATAAATCTGCGAAG.......................................................................................................................................................................CTCTGGGACATCAGAACTTTGACACTTATCAAGAACTATACGACCGAACGACCAGTGAATGCCGTCACTATGTCGCCGCTTCTTAATCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTTTGGGAGGTGGTCAAGACGCTTCAGCTGTCACCACTACTGATCATCGTGCTGGAAAGTTTGAGGCCAAGTTCTATGACAAG.........................................................................................................................ATTCTTACTGAAGAAATAGGAGGTGTTAAAGGGCATTTTGGACCAATAAATGCTTTGGCTTTCAACCCTGATGGGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGCAAGTGGTGGTGAAGATGGATACGTGAGATTGCATCATTTTGACCAGGATTACTTCAACATCAAGATTTAGATTTTGATAGGACCAGG-TTTGTACTTTTGGGTA-TGATGGACATTGACGTTTCTCTGGAGG--AA--GCGTCTTTCCGGTTATCTCCCATGAATATTTTGTATGCTTTTATTGTTGCAACCTATGTTCATCGCACAAGAGAAACTAACATTTTATTTCCGGACAAGTTGAGCAAAACATATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345347" ref_strand="+" ref_description="SGN-E345347 [cTOF-13-I13]">
      <seq>gcaatgttgtgggatgtccaaactggtgcccagctgcacacgttcacctttgactcccctgctaggtctgttgatttttcagttggcgataaactcgcagtgatcaccactgatccttttatgggactgacatctgctatccatatcaaaaatatcagcaaagatcccagtgaacaaatgagtgagtcggtgctcgtcttaaagggtccccagggaagaatcaacagagctgtgtggggacccctgaataaaacaattataagtgctggtgaagatgctgtaatacgtatctgggatgctgagactggaaaggtactgaaggagtctgacaaagaaatcggtcataaaaagggtattacatcgctacaaaaatcagtggatggttcgcacttcattactggttctcttgataaatctgcaaagctctgggacatcagaagtttgacacttatcaagaactatacgaccgaacgacccgtgaatgctgtcacaatgtcgccgcttcttaatcatgtggttctgggaggtggtcaagacgcttcagctgtcaccactactgaccatcgtgctggaaagtttgaggccaagttctatgacaagattcttactgaagaaataggaggtgtcaaagggcattttggaccaataaatgctttggctttcaatcctgatgggaaaagttttgcaagtggtggtgaagatggatatgtgagattgcatcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="11627" stop="6573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11327" g_stop="11153" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11152" i_stop="9439" i_length="1714">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9438" g_stop="9311" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="303" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9310" i_stop="9041" i_length="270">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9040" g_stop="8921" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="423" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8920" i_stop="8754" i_length="167">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8753" g_stop="8664" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="513" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8663" i_stop="8055" i_length="609">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8054" g_stop="7968" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="600" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7967" i_stop="7847" i_length="121">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7846" g_stop="7767" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="680" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="7766" i_stop="6918" i_length="849">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="6917" g_stop="6873" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="725" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E345347" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11327" e_stop="11153"/>
          <exon e_start="9438" e_stop="9311"/>
          <exon e_start="9040" e_stop="8921"/>
          <exon e_start="8753" e_stop="8664"/>
          <exon e_start="8054" e_stop="7968"/>
          <exon e_start="7846" e_stop="7767"/>
          <exon e_start="6917" e_stop="6873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAACGTAAGTTTCTGGAACTCTAAGGTTGATCTTCTGTTGTGTTGTCTTGTTTAATTGTTGTTTTTTAACAATTAATTGTTGGGTTGTATTTCTGTTTGTGAAGTAAATATTGCCTTTGTGTACTCTTTCCTTTTAAATTGCGAACAATGAATTGGATTATTGTGAAAGCATCAAATAAGTTCCTTTTATGAGCTTTCAAGTATCTTGTGACAAGCTTCATGTCTCCAGTGTAGCTATTCTTAAGCCCACTGTGTTTCCTTTTCAGAGATGTGAATATTGGACTCTTTATGACCTCAAGTCAGAGCTATACAGATGCATTTTATTTGATTATGATCATATTAGCACATAGTTGGTTTTTAAATGACTTGGATATATCGTGAATTAATTTCTCAAGCTACCAATAAAGTAGCTATGATGGTTTTGCTGTATTCTTAATTAGTTATATTATGATTTGCTATGATTGACAATTTGACATCATTTATCAGATGTTTGTCTGTTCTGTCTTTGTGCTGATATTTTAGTTGTTGAGGCCGTTCCTGGTATGTCTGTGGTGGTTAGTATCATTGAAGAAACCTGTCATTTAAATATCAGCATATGAATAATTGTCTAAATATGTGGAGTGAAGGGACTGTTTCTTTGCATTCCGACTTACCAACTCAGGCCACCCAATTGTATATATGTCTGCACTGGCCCATGTTTTCAAACTGATCAGAATGGATCCCTCCTGGTACTGATCCTCCATCGGTAATAACAATACCCAACTTCCATGCTGGCACCTATGCTATCCACCAACACTTGCCAAAACCAACATTCATGCAGAAACCCAACATATAATTTACTCTCTATGATAAGTACTACAACCAGAATAGTGGAGCAAAACCATGTCCTGTCACTAGGAGTGTTCATGTTTATCAAGTTCGGAACTCCTCTATCACCGGCCACTTAGCATGATGCACTTGGGTATGTAAAGTGAATTTGTTTATGCATGTTGTAAGTTAACAGGCGACAGCTTACTCCCTAACTTCACCACAAAGGAGCTTAAAGGAACCAGTCCTGTTACAATCACATGTCCTTTAACTATAGAGTTACTAGTGCTACTTCTGAGTTAATTGATAATTCACTTTGATATGGAGCTTGGTTATGGGGTCTGGCGGCGAAGCAGATGATTTCTATCCCCCCCCCCCCCCCACTCTTTTTAAGTTCAGTTACCAAAGAAAAAATTGTTGTAGTCATATTATACTTCCCCTTTTGTTTCCTTTAAAGTCACATATCGTTAATAATTATCTTATTACTTTATCCATTATCCTTAATTCTATGTAAACCAGAACTTGAGTATTGGAAAAAAATGTACTGTAGACTATATCAAAAAGCAAAGATGACCACCATTAAAAACATGTAGGATTTATGTGCAGAAAATGGAAGGGTCTTGCTTTCTGTTCAATTATACAAGATTGGTAAAGGTATATAGCTTTAGGGAATATTTGTTGTCAAGAGTTAAGCCTAATATGTTTCCAGAGTTGTCACATCTAACACATTGAATATGCTTTGGAATTTGAGACGAAGGTATATGCCTTGTATAGTTTGTTATTGCTTCTCTGGTGGTTGCTGTCTTATACTAATTTCAAACGAGCCTATCTTCCATTATTTTGGGCACTTTCTGACTCTCATCTCATGATCTTGACATTCACTGTATCTAATAATAATCTTCTTATTTTAGAAATGAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAGGTACGTTAGTGTGTTTCAGCTTCATGGAAAATGTGCTGTCAATATGTCAAAGTTCGATAATATTTTGGGTTATTACTCTAGATACTTTATTTTATTATTATGAACAGTTTGGTGATTTATCAGGTCGCTTAGTTTTTGCATTATTTCACATCGCAGTATCTGCTTTGTTGTTTGCTTTGTCTTCCTTTCTTAAATATTAATTAGTTTTAAGATAGTTTTCCCTGTTCTTCGAAGCTAGTGTAATGTATTGACGGTCTTCCGAATTTGTAGACTGGAAAGGTACTGAAGGAGTCTGACAAAGAAATCGGTCATAAAAAGGGTATTACATCGCTACAAAAATCAGTGGATGGTTCGCACTTCATTACTGGTTCTCTTGATAAATCTGCAAAGGTAGCTCCTCATAGCCCTTGGAAATATGGCCATTGTTTCTTTATAAGTTCTTGCAACTACCTAGCAATATTTCATTTTGGATTTTCAGCTGCATATGTCCATATCCACTTTGTTTTTTTTTTCTTTTTAGAGTTCCTCTTTATTTCTAATCTCTGTCGATTTTCCAGCTCTGGGACATCAGAAGTTTGACACTTATCAAGAACTATACGACCGAACGACCCGTGAATGCTGTCACAATGTCGCCGCTTCTTAATCATGTATGTATTGACACTCATTAACTGATACATTGAATGGTTCTGATAGATAGCTTTTTAATCTGTTATCTTCTCCTATGTATTTTTCTTTTTTATTTTTGGTGGGGGTGGGGGGTGGTTGAAACAAGTTAAAATTTTTGAAATGTTCACGAAGTTACCTCCTTGAAGATAATAATGTCTTCGACTTGCAGCTCTTTTATGTTAATTATCAGTGTCCTGAATAAGATCTTTTAATCTCAAAAAGATATTTTAATGGGGAGTTACAAGTCCACTGTTACAAGAAATTGATTAAACCGTTGTACTGTGGTAGATCTTTAATCATTCGCAAGATAAGGGAACTTAATGCTCACTGTAACCAACATTGCTCATTACTGTTCAACATTTGATAAGGACACTTGAACTTAAATATCTTATGAAACAAAAGAGATGTTCTTCAAGAGTGTCTCATTACTGATTAAGAAAATAACTAAAAAGGACCGGATATGTGTTACTTTGAATCGGTTTGATGTTGCTAGTCTAAAGATTTGTTCTTCTGCAAGCAAAGTTTCTCCGAAGGATTCTGTAATGTTTCTTGATGTATCTCTCTAATCTAATGCTGCTCTTGGTCAATAGGTGGTTCTGGGAGGTGGTCAAGACGCTTCAGCTGTCACCACTACTGACCATCGTGCTGGAAAGTTTGAGGCCAAGTTCTATGACAAGGTAAGTGGATATATTTTGGTGTTAGGAATAATCTTCCCCCATCCTGAAAAAGAGAAAAAATGGATCTGATTTGGTTTCATTACATTTCGGAGTGTGTAATTTGTATCTGGATATGCATCAGATTCTTACTGAAGAAATAGGAGGTGTCAAAGGGCATTTTGGACCAATAAATGCTTTGGCTTTCAATCCTGATGGGAAAAGGTAATCATTCCACATTCCTGCCATCTCATATGCGGATGTCATGTACTTGTGCCATTATTGAAACTTGACTTTGTTTTCGTGTGGGCTCACGAGTTTTAGATTTTAATCCAATAATTTATTCTAAAAATTGTGTTCCTTTTCTTTATAGGTTCTAAGAAAACTCAACTTTTCTTGTTTTCTCATCTCGTTTTTGTAGTAGTACTACTTCCTCCGTGTGACAAAGATGAAGACACTCTTTATTAACAATTACATTTTATAAGAATGATAGTGAATCCTAATCCGTTTTTAGTCACACAAGTATAGTACTACTACTACTACCTCCATATGACAAAGATGAAGCTGTTCTTTATGAACAATTAAGTTTATAAGAATCATAGTGGTTCCTAATCAGTTTTTTTAGTCACATTGTTATTAACAATCGATGATAAAAGGTTCCTGCTTAAGAAAATGGTGGACTTATTTTAGGACAACTCAGATAGAAAATTAAGGCAACTGTTTTTGGATGGGTAGAGTGAAATTAGTTTGTTGGAATTTTTTGAACATGCAATTTTGTGCTAGTGTTGTATGCCCTTGATGGTTCTCTTTACTTCCTCTCCAAGTTTGTAGTAAGTTTTGGATCCTTCCAACTTAAAGGTGAAAACAGGAAAAGAAACATCATCTTTGAGTTATTTGAAGTTTTACATATTTAGTGTGTACTTGAGCAAAGGGAGAGTTTTTCGATCACAATGAATAACAAATTTCAGTAATGCTGATCATTTTCCAATTTGGACATGTTTAAAAAGCTGATTTGTTGGCGAAGTTAATTGGTTATTCCATCTCGAGTGTTGTGTGAATGTTTGATTTTTGCAGTTTTGCAAGTGGTGGTGAAGATGGATATGTGAGATTGCATCATTT</genome_strand>
        <mrna_strand>GCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAG..............................................................................................................................................................................................................................................................................ACTGGAAAGGTACTGAAGGAGTCTGACAAAGAAATCGGTCATAAAAAGGGTATTACATCGCTACAAAAATCAGTGGATGGTTCGCACTTCATTACTGGTTCTCTTGATAAATCTGCAAAG.......................................................................................................................................................................CTCTGGGACATCAGAAGTTTGACACTTATCAAGAACTATACGACCGAACGACCCGTGAATGCTGTCACAATGTCGCCGCTTCTTAATCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTCTGGGAGGTGGTCAAGACGCTTCAGCTGTCACCACTACTGACCATCGTGCTGGAAAGTTTGAGGCCAAGTTCTATGACAAG.........................................................................................................................ATTCTTACTGAAGAAATAGGAGGTGTCAAAGGGCATTTTGGACCAATAAATGCTTTGGCTTTCAATCCTGATGGGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCAAGTGGTGGTGAAGATGGATATGTGAGATTGCATCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690744" ref_strand="+" ref_description="SGN-E690744 [LH_Ea04E22]">
      <seq>ccgtccggcgacgaacaacaatctcactgagagaatcactccggcgaccgactacaaacaacgatgaggccaatattgatgaagggccatgaaaggccgttaacttttctaaagtacaatagagatggagatctgctcttctcttgcgctaaggaccatacccctaccgtttggtttggccataacggcgagcgcctcggcacttaccgtggccataacggtgccgtctggtgctgtgacgtttctcgggattcgtccaggctaataactggaagtgcagatcagactgcaatgttgtgggatgtccaaactggtacccagctgcacacattcacctttgactcccctgctaggtctgttgatttttcagttggcgataaacttgcagtgatcaccactgatccttttatgggactgacatctgctatccatatcaaaaatatcagcaaagatcccagtgaacaaatgagtgagtcggtgcttgtcttaaagggtccccagggaagaatcaacagagctgtgtggggacccctgaataaaacaattataagtgctggtgaagatgctgtaatacgtatctgggatgctgagactggaaaggtactgaaggagtctgacaaggaaatcggtcataaaaagggtattacatcgctacaaaaatcagtggatggttcgcacttcattactggttctcttgataaatctgcaaagctctgggacatcagaagtttgacacttatcaagaactatacgaccgaacgacccgtgaatgctgtcacaatgtcgccgcttcttaatcatgtggttctgggaggtggtcaagacgcttcagctgtcaccactactgaccatcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="13003" stop="7699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12706" g_stop="12460" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11153" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="463" r_length="216" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11152" i_stop="9439" i_length="1714">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9438" g_stop="9311" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="591" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9310" i_stop="9041" i_length="270">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9040" g_stop="8921" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="711" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8920" i_stop="8754" i_length="167">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8753" g_stop="8664" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="801" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8663" i_stop="8055" i_length="609">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8054" g_stop="7999" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="802" r_stop="857" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E690744" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12706" e_stop="12460"/>
          <exon e_start="11368" e_stop="11153"/>
          <exon e_start="9438" e_stop="9311"/>
          <exon e_start="9040" e_stop="8921"/>
          <exon e_start="8753" e_stop="8664"/>
          <exon e_start="8054" e_stop="7999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAACGTAAGTTTCTGGAACTCTAAGGTTGATCTTCTGTTGTGTTGTCTTGTTTAATTGTTGTTTTTTAACAATTAATTGTTGGGTTGTATTTCTGTTTGTGAAGTAAATATTGCCTTTGTGTACTCTTTCCTTTTAAATTGCGAACAATGAATTGGATTATTGTGAAAGCATCAAATAAGTTCCTTTTATGAGCTTTCAAGTATCTTGTGACAAGCTTCATGTCTCCAGTGTAGCTATTCTTAAGCCCACTGTGTTTCCTTTTCAGAGATGTGAATATTGGACTCTTTATGACCTCAAGTCAGAGCTATACAGATGCATTTTATTTGATTATGATCATATTAGCACATAGTTGGTTTTTAAATGACTTGGATATATCGTGAATTAATTTCTCAAGCTACCAATAAAGTAGCTATGATGGTTTTGCTGTATTCTTAATTAGTTATATTATGATTTGCTATGATTGACAATTTGACATCATTTATCAGATGTTTGTCTGTTCTGTCTTTGTGCTGATATTTTAGTTGTTGAGGCCGTTCCTGGTATGTCTGTGGTGGTTAGTATCATTGAAGAAACCTGTCATTTAAATATCAGCATATGAATAATTGTCTAAATATGTGGAGTGAAGGGACTGTTTCTTTGCATTCCGACTTACCAACTCAGGCCACCCAATTGTATATATGTCTGCACTGGCCCATGTTTTCAAACTGATCAGAATGGATCCCTCCTGGTACTGATCCTCCATCGGTAATAACAATACCCAACTTCCATGCTGGCACCTATGCTATCCACCAACACTTGCCAAAACCAACATTCATGCAGAAACCCAACATATAATTTACTCTCTATGATAAGTACTACAACCAGAATAGTGGAGCAAAACCATGTCCTGTCACTAGGAGTGTTCATGTTTATCAAGTTCGGAACTCCTCTATCACCGGCCACTTAGCATGATGCACTTGGGTATGTAAAGTGAATTTGTTTATGCATGTTGTAAGTTAACAGGCGACAGCTTACTCCCTAACTTCACCACAAAGGAGCTTAAAGGAACCAGTCCTGTTACAATCACATGTCCTTTAACTATAGAGTTACTAGTGCTACTTCTGAGTTAATTGATAATTCACTTTGATATGGAGCTTGGTTATGGGGTCTGGCGGCGAAGCAGATGATTTCTATCCCCCCCCCCCCCCCACTCTTTTTAAGTTCAGTTACCAAAGAAAAAATTGTTGTAGTCATATTATACTTCCCCTTTTGTTTCCTTTAAAGTCACATATCGTTAATAATTATCTTATTACTTTATCCATTATCCTTAATTCTATGTAAACCAGAACTTGAGTATTGGAAAAAAATGTACTGTAGACTATATCAAAAAGCAAAGATGACCACCATTAAAAACATGTAGGATTTATGTGCAGAAAATGGAAGGGTCTTGCTTTCTGTTCAATTATACAAGATTGGTAAAGGTATATAGCTTTAGGGAATATTTGTTGTCAAGAGTTAAGCCTAATATGTTTCCAGAGTTGTCACATCTAACACATTGAATATGCTTTGGAATTTGAGACGAAGGTATATGCCTTGTATAGTTTGTTATTGCTTCTCTGGTGGTTGCTGTCTTATACTAATTTCAAACGAGCCTATCTTCCATTATTTTGGGCACTTTCTGACTCTCATCTCATGATCTTGACATTCACTGTATCTAATAATAATCTTCTTATTTTAGAAATGAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAGGTACGTTAGTGTGTTTCAGCTTCATGGAAAATGTGCTGTCAATATGTCAAAGTTCGATAATATTTTGGGTTATTACTCTAGATACTTTATTTTATTATTATGAACAGTTTGGTGATTTATCAGGTCGCTTAGTTTTTGCATTATTTCACATCGCAGTATCTGCTTTGTTGTTTGCTTTGTCTTCCTTTCTTAAATATTAATTAGTTTTAAGATAGTTTTCCCTGTTCTTCGAAGCTAGTGTAATGTATTGACGGTCTTCCGAATTTGTAGACTGGAAAGGTACTGAAGGAGTCTGACAAAGAAATCGGTCATAAAAAGGGTATTACATCGCTACAAAAATCAGTGGATGGTTCGCACTTCATTACTGGTTCTCTTGATAAATCTGCAAAGGTAGCTCCTCATAGCCCTTGGAAATATGGCCATTGTTTCTTTATAAGTTCTTGCAACTACCTAGCAATATTTCATTTTGGATTTTCAGCTGCATATGTCCATATCCACTTTGTTTTTTTTTTCTTTTTAGAGTTCCTCTTTATTTCTAATCTCTGTCGATTTTCCAGCTCTGGGACATCAGAAGTTTGACACTTATCAAGAACTATACGACCGAACGACCCGTGAATGCTGTCACAATGTCGCCGCTTCTTAATCATGTATGTATTGACACTCATTAACTGATACATTGAATGGTTCTGATAGATAGCTTTTTAATCTGTTATCTTCTCCTATGTATTTTTCTTTTTTATTTTTGGTGGGGGTGGGGGGTGGTTGAAACAAGTTAAAATTTTTGAAATGTTCACGAAGTTACCTCCTTGAAGATAATAATGTCTTCGACTTGCAGCTCTTTTATGTTAATTATCAGTGTCCTGAATAAGATCTTTTAATCTCAAAAAGATATTTTAATGGGGAGTTACAAGTCCACTGTTACAAGAAATTGATTAAACCGTTGTACTGTGGTAGATCTTTAATCATTCGCAAGATAAGGGAACTTAATGCTCACTGTAACCAACATTGCTCATTACTGTTCAACATTTGATAAGGACACTTGAACTTAAATATCTTATGAAACAAAAGAGATGTTCTTCAAGAGTGTCTCATTACTGATTAAGAAAATAACTAAAAAGGACCGGATATGTGTTACTTTGAATCGGTTTGATGTTGCTAGTCTAAAGATTTGTTCTTCTGCAAGCAAAGTTTCTCCGAAGGATTCTGTAATGTTTCTTGATGTATCTCTCTAATCTAATGCTGCTCTTGGTCAATAGGTGGTTCTGGGAGGTGGTCAAGACGCTTCAGCTGTCACCACTACTGACCATCGTGC</genome_strand>
        <mrna_strand>CCGTCCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAATAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGGCCATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTCTGGTGCTGTGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCGTCCAGGCTAATAACTGGAAGTGCAGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTACCCAGCTGCACACATTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTTGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGAGTGAGTCGGTGCTTGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAG..............................................................................................................................................................................................................................................................................ACTGGAAAGGTACTGAAGGAGTCTGACAAGGAAATCGGTCATAAAAAGGGTATTACATCGCTACAAAAATCAGTGGATGGTTCGCACTTCATTACTGGTTCTCTTGATAAATCTGCAAAG.......................................................................................................................................................................CTCTGGGACATCAGAAGTTTGACACTTATCAAGAACTATACGACCGAACGACCCGTGAATGCTGTCACAATGTCGCCGCTTCTTAATCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTCTGGGAGGTGGTCAAGACGCTTCAGCTGTCACCACTACTGACCATCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705299" ref_strand="+" ref_description="SGN-E705299 [FA26CH10]">
      <seq>cttactccggcgacgaacaacaatctcactgagagaatcactccggcgaccgactacaaacaacgatgaggccaatattgatgaagggccatgaaaggccgttaacttttctaaagtacaacagagatggagatctgctcttctcttgcgctaaggaccatacccctaccgtttggtttgccgataacggcgagcgcctcggcacttaccgtggccataacggtgccgtttggtgctgtgacgtttctcgggattcgtccaggctaataactggaagtgcggatcagactgcaatgttgtgggatgtccaaactggtgcccagctgcacacgttcacctttgactcccctgctaggtctgttgatttttcagttggcgataaactcgcagtgatcaccactgatccttttatgggactgacatctgctatccatatcaaaaatatcagcaaagatcccagtgaacaaatgagtgagtcggtgctcgtcttaaagggtccccagggaagaatcaacagagctgtgtggggacccctgaataaaacaattataagtgctggtgaagatgctgtaatacgtatctgggatgctgagactggaaaggtactgaaggagtctgacaaagaaatcggtcataaaaagggtattacatcgctacaaaaatcagtggatggttcgcacttcattactggttctcttgataaatctgcaaagctctgggacatcagaagtttgacacttatcaagaactatacgaccgaacgacccgtgaatgctgtcacaatgtcgccgcttcttaatcatgtggttctgggaggtggtcaagacgcttcagctgtcaccactactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="13008" stop="7709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12708" g_stop="12460" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11153" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="465" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11152" i_stop="9439" i_length="1714">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9438" g_stop="9311" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="593" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9310" i_stop="9041" i_length="270">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9040" g_stop="8921" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="713" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8920" i_stop="8754" i_length="167">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8753" g_stop="8664" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="803" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8663" i_stop="8055" i_length="609">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8054" g_stop="8009" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="804" r_stop="849" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E705299" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12708" e_stop="12460"/>
          <exon e_start="11368" e_stop="11153"/>
          <exon e_start="9438" e_stop="9311"/>
          <exon e_start="9040" e_stop="8921"/>
          <exon e_start="8753" e_stop="8664"/>
          <exon e_start="8054" e_stop="8009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTCCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAACGTAAGTTTCTGGAACTCTAAGGTTGATCTTCTGTTGTGTTGTCTTGTTTAATTGTTGTTTTTTAACAATTAATTGTTGGGTTGTATTTCTGTTTGTGAAGTAAATATTGCCTTTGTGTACTCTTTCCTTTTAAATTGCGAACAATGAATTGGATTATTGTGAAAGCATCAAATAAGTTCCTTTTATGAGCTTTCAAGTATCTTGTGACAAGCTTCATGTCTCCAGTGTAGCTATTCTTAAGCCCACTGTGTTTCCTTTTCAGAGATGTGAATATTGGACTCTTTATGACCTCAAGTCAGAGCTATACAGATGCATTTTATTTGATTATGATCATATTAGCACATAGTTGGTTTTTAAATGACTTGGATATATCGTGAATTAATTTCTCAAGCTACCAATAAAGTAGCTATGATGGTTTTGCTGTATTCTTAATTAGTTATATTATGATTTGCTATGATTGACAATTTGACATCATTTATCAGATGTTTGTCTGTTCTGTCTTTGTGCTGATATTTTAGTTGTTGAGGCCGTTCCTGGTATGTCTGTGGTGGTTAGTATCATTGAAGAAACCTGTCATTTAAATATCAGCATATGAATAATTGTCTAAATATGTGGAGTGAAGGGACTGTTTCTTTGCATTCCGACTTACCAACTCAGGCCACCCAATTGTATATATGTCTGCACTGGCCCATGTTTTCAAACTGATCAGAATGGATCCCTCCTGGTACTGATCCTCCATCGGTAATAACAATACCCAACTTCCATGCTGGCACCTATGCTATCCACCAACACTTGCCAAAACCAACATTCATGCAGAAACCCAACATATAATTTACTCTCTATGATAAGTACTACAACCAGAATAGTGGAGCAAAACCATGTCCTGTCACTAGGAGTGTTCATGTTTATCAAGTTCGGAACTCCTCTATCACCGGCCACTTAGCATGATGCACTTGGGTATGTAAAGTGAATTTGTTTATGCATGTTGTAAGTTAACAGGCGACAGCTTACTCCCTAACTTCACCACAAAGGAGCTTAAAGGAACCAGTCCTGTTACAATCACATGTCCTTTAACTATAGAGTTACTAGTGCTACTTCTGAGTTAATTGATAATTCACTTTGATATGGAGCTTGGTTATGGGGTCTGGCGGCGAAGCAGATGATTTCTATCCCCCCCCCCCCCCCACTCTTTTTAAGTTCAGTTACCAAAGAAAAAATTGTTGTAGTCATATTATACTTCCCCTTTTGTTTCCTTTAAAGTCACATATCGTTAATAATTATCTTATTACTTTATCCATTATCCTTAATTCTATGTAAACCAGAACTTGAGTATTGGAAAAAAATGTACTGTAGACTATATCAAAAAGCAAAGATGACCACCATTAAAAACATGTAGGATTTATGTGCAGAAAATGGAAGGGTCTTGCTTTCTGTTCAATTATACAAGATTGGTAAAGGTATATAGCTTTAGGGAATATTTGTTGTCAAGAGTTAAGCCTAATATGTTTCCAGAGTTGTCACATCTAACACATTGAATATGCTTTGGAATTTGAGACGAAGGTATATGCCTTGTATAGTTTGTTATTGCTTCTCTGGTGGTTGCTGTCTTATACTAATTTCAAACGAGCCTATCTTCCATTATTTTGGGCACTTTCTGACTCTCATCTCATGATCTTGACATTCACTGTATCTAATAATAATCTTCTTATTTTAGAAATGAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAGGTACGTTAGTGTGTTTCAGCTTCATGGAAAATGTGCTGTCAATATGTCAAAGTTCGATAATATTTTGGGTTATTACTCTAGATACTTTATTTTATTATTATGAACAGTTTGGTGATTTATCAGGTCGCTTAGTTTTTGCATTATTTCACATCGCAGTATCTGCTTTGTTGTTTGCTTTGTCTTCCTTTCTTAAATATTAATTAGTTTTAAGATAGTTTTCCCTGTTCTTCGAAGCTAGTGTAATGTATTGACGGTCTTCCGAATTTGTAGACTGGAAAGGTACTGAAGGAGTCTGACAAAGAAATCGGTCATAAAAAGGGTATTACATCGCTACAAAAATCAGTGGATGGTTCGCACTTCATTACTGGTTCTCTTGATAAATCTGCAAAGGTAGCTCCTCATAGCCCTTGGAAATATGGCCATTGTTTCTTTATAAGTTCTTGCAACTACCTAGCAATATTTCATTTTGGATTTTCAGCTGCATATGTCCATATCCACTTTGTTTTTTTTTTCTTTTTAGAGTTCCTCTTTATTTCTAATCTCTGTCGATTTTCCAGCTCTGGGACATCAGAAGTTTGACACTTATCAAGAACTATACGACCGAACGACCCGTGAATGCTGTCACAATGTCGCCGCTTCTTAATCATGTATGTATTGACACTCATTAACTGATACATTGAATGGTTCTGATAGATAGCTTTTTAATCTGTTATCTTCTCCTATGTATTTTTCTTTTTTATTTTTGGTGGGGGTGGGGGGTGGTTGAAACAAGTTAAAATTTTTGAAATGTTCACGAAGTTACCTCCTTGAAGATAATAATGTCTTCGACTTGCAGCTCTTTTATGTTAATTATCAGTGTCCTGAATAAGATCTTTTAATCTCAAAAAGATATTTTAATGGGGAGTTACAAGTCCACTGTTACAAGAAATTGATTAAACCGTTGTACTGTGGTAGATCTTTAATCATTCGCAAGATAAGGGAACTTAATGCTCACTGTAACCAACATTGCTCATTACTGTTCAACATTTGATAAGGACACTTGAACTTAAATATCTTATGAAACAAAAGAGATGTTCTTCAAGAGTGTCTCATTACTGATTAAGAAAATAACTAAAAAGGACCGGATATGTGTTACTTTGAATCGGTTTGATGTTGCTAGTCTAAAGATTTGTTCTTCTGCAAGCAAAGTTTCTCCGAAGGATTCTGTAATGTTTCTTGATGTATCTCTCTAATCTAATGCTGCTCTTGGTCAATAGGTGGTTCTGGGAGGTGGTCAAGACGCTTCAGCTGTCACCACTACTG</genome_strand>
        <mrna_strand>CTTACTCCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAG..............................................................................................................................................................................................................................................................................ACTGGAAAGGTACTGAAGGAGTCTGACAAAGAAATCGGTCATAAAAAGGGTATTACATCGCTACAAAAATCAGTGGATGGTTCGCACTTCATTACTGGTTCTCTTGATAAATCTGCAAAG.......................................................................................................................................................................CTCTGGGACATCAGAAGTTTGACACTTATCAAGAACTATACGACCGAACGACCCGTGAATGCTGTCACAATGTCGCCGCTTCTTAATCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTCTGGGAGGTGGTCAAGACGCTTCAGCTGTCACCACTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702791" ref_strand="+" ref_description="SGN-E702791 [FA19CH02]">
      <seq>ccgccttcgtctctctccatctttcctcagcggcgaacttactccggcgacgaacaacaatctcactgagagaatcactccggcgaccgactacaaacaacgatgaggccaatattgatgaagggccatgaaaggccgttaacttttctaaagtacaacagagatggagatctgctcttctcttgcgctaaggaccatacccctaccgtttggtttgccgataacggcgagcgcctcggcacttaccgtggccataacggtgccgtttggtgctgtgacgtttctcgggattcgtccaggctaataactggaagtgcggatcagactgcaatgttgtgggatgtccaaactggtgcccagctgcacacgttcacctttgactcccctgctaggtctgttgatttttcagttggcgataaactcgcagtgatcaccactgatccttttatgggactgacatctgctatccatatcaaaaatatcagcaaagatcccagtgaacaaatgagtgagtcggtgctcgtcttaaagggtccccagggaagaatcaacagagctgtgtggggacccctgaataaaacaattataagtgctggtgaagatgctgtaatacgtatctgggatgctgagactggaaaggtactgaaggagtctgacaaagaaatcggtcataaaaagggtattacatcgctacaaaaatcagtggatggttcgcacttcattactggttctcttgataaatctgcaaagctctgggacatcagaagtttgacacttatcaagaactatacgaccgaacgacccgtgaatgctgtcacaatgtcgccgcttcttaatcatgtggttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="13045" stop="8362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12745" g_stop="12460" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11153" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="502" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11152" i_stop="9439" i_length="1714">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9438" g_stop="9311" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="630" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9310" i_stop="9041" i_length="270">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9040" g_stop="8921" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="750" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8920" i_stop="8754" i_length="167">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8753" g_stop="8664" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="840" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E702791" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12745" e_stop="12460"/>
          <exon e_start="11368" e_stop="11153"/>
          <exon e_start="9438" e_stop="9311"/>
          <exon e_start="9040" e_stop="8921"/>
          <exon e_start="8753" e_stop="8664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTCTTCGTCTCTCTCCATCTTTCCTCAGCGGCGAACTTACTCCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAACGTAAGTTTCTGGAACTCTAAGGTTGATCTTCTGTTGTGTTGTCTTGTTTAATTGTTGTTTTTTAACAATTAATTGTTGGGTTGTATTTCTGTTTGTGAAGTAAATATTGCCTTTGTGTACTCTTTCCTTTTAAATTGCGAACAATGAATTGGATTATTGTGAAAGCATCAAATAAGTTCCTTTTATGAGCTTTCAAGTATCTTGTGACAAGCTTCATGTCTCCAGTGTAGCTATTCTTAAGCCCACTGTGTTTCCTTTTCAGAGATGTGAATATTGGACTCTTTATGACCTCAAGTCAGAGCTATACAGATGCATTTTATTTGATTATGATCATATTAGCACATAGTTGGTTTTTAAATGACTTGGATATATCGTGAATTAATTTCTCAAGCTACCAATAAAGTAGCTATGATGGTTTTGCTGTATTCTTAATTAGTTATATTATGATTTGCTATGATTGACAATTTGACATCATTTATCAGATGTTTGTCTGTTCTGTCTTTGTGCTGATATTTTAGTTGTTGAGGCCGTTCCTGGTATGTCTGTGGTGGTTAGTATCATTGAAGAAACCTGTCATTTAAATATCAGCATATGAATAATTGTCTAAATATGTGGAGTGAAGGGACTGTTTCTTTGCATTCCGACTTACCAACTCAGGCCACCCAATTGTATATATGTCTGCACTGGCCCATGTTTTCAAACTGATCAGAATGGATCCCTCCTGGTACTGATCCTCCATCGGTAATAACAATACCCAACTTCCATGCTGGCACCTATGCTATCCACCAACACTTGCCAAAACCAACATTCATGCAGAAACCCAACATATAATTTACTCTCTATGATAAGTACTACAACCAGAATAGTGGAGCAAAACCATGTCCTGTCACTAGGAGTGTTCATGTTTATCAAGTTCGGAACTCCTCTATCACCGGCCACTTAGCATGATGCACTTGGGTATGTAAAGTGAATTTGTTTATGCATGTTGTAAGTTAACAGGCGACAGCTTACTCCCTAACTTCACCACAAAGGAGCTTAAAGGAACCAGTCCTGTTACAATCACATGTCCTTTAACTATAGAGTTACTAGTGCTACTTCTGAGTTAATTGATAATTCACTTTGATATGGAGCTTGGTTATGGGGTCTGGCGGCGAAGCAGATGATTTCTATCCCCCCCCCCCCCCCACTCTTTTTAAGTTCAGTTACCAAAGAAAAAATTGTTGTAGTCATATTATACTTCCCCTTTTGTTTCCTTTAAAGTCACATATCGTTAATAATTATCTTATTACTTTATCCATTATCCTTAATTCTATGTAAACCAGAACTTGAGTATTGGAAAAAAATGTACTGTAGACTATATCAAAAAGCAAAGATGACCACCATTAAAAACATGTAGGATTTATGTGCAGAAAATGGAAGGGTCTTGCTTTCTGTTCAATTATACAAGATTGGTAAAGGTATATAGCTTTAGGGAATATTTGTTGTCAAGAGTTAAGCCTAATATGTTTCCAGAGTTGTCACATCTAACACATTGAATATGCTTTGGAATTTGAGACGAAGGTATATGCCTTGTATAGTTTGTTATTGCTTCTCTGGTGGTTGCTGTCTTATACTAATTTCAAACGAGCCTATCTTCCATTATTTTGGGCACTTTCTGACTCTCATCTCATGATCTTGACATTCACTGTATCTAATAATAATCTTCTTATTTTAGAAATGAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAGGTACGTTAGTGTGTTTCAGCTTCATGGAAAATGTGCTGTCAATATGTCAAAGTTCGATAATATTTTGGGTTATTACTCTAGATACTTTATTTTATTATTATGAACAGTTTGGTGATTTATCAGGTCGCTTAGTTTTTGCATTATTTCACATCGCAGTATCTGCTTTGTTGTTTGCTTTGTCTTCCTTTCTTAAATATTAATTAGTTTTAAGATAGTTTTCCCTGTTCTTCGAAGCTAGTGTAATGTATTGACGGTCTTCCGAATTTGTAGACTGGAAAGGTACTGAAGGAGTCTGACAAAGAAATCGGTCATAAAAAGGGTATTACATCGCTACAAAAATCAGTGGATGGTTCGCACTTCATTACTGGTTCTCTTGATAAATCTGCAAAGGTAGCTCCTCATAGCCCTTGGAAATATGGCCATTGTTTCTTTATAAGTTCTTGCAACTACCTAGCAATATTTCATTTTGGATTTTCAGCTGCATATGTCCATATCCACTTTGTTTTTTTTTTCTTTTTAGAGTTCCTCTTTATTTCTAATCTCTGTCGATTTTCCAGCTCTGGGACATCAGAAGTTTGACACTTATCAAGAACTATACGACCGAACGACCCGTGAATGCTGTCACAATGTCGCCGCTTCTTAATCAT</genome_strand>
        <mrna_strand>CCGCCTTCGTCTCTCTCCATCTTTCCTCAGCGGCGAACTTACTCCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAG..............................................................................................................................................................................................................................................................................ACTGGAAAGGTACTGAAGGAGTCTGACAAAGAAATCGGTCATAAAAAGGGTATTACATCGCTACAAAAATCAGTGGATGGTTCGCACTTCATTACTGGTTCTCTTGATAAATCTGCAAAG.......................................................................................................................................................................CTCTGGGACATCAGAAGTTTGACACTTATCAAGAACTATACGACCGAACGACCCGTGAATGCTGTCACAATGTCGCCGCTTCTTAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702306" ref_strand="+" ref_description="SGN-E702306 [FA18BD12]">
      <seq>ctccggcgacgaacaacaatctcactgagagaatcactccggcgaccgactacaaacaacgatgaggccaatattgatgaagggccatgaaaggccgttaacttttctaaagtacaacagagatggagatctgctcttctcttgcgctaaggaccatacccctaccgtttggtttgccgataacggcgagcgcctcggcacttaccgtggccataacggtgccgtttggtgctgtgacgtttctcgggattcgtccaggctaataactggaagtgcggatcagactgcaatgttgtgggatgtccaaactggtgcccagctgcacacgttcacctttgactcccctgctaggtctgttgatttttcagttggcgataaactcgcagtgatcaccactgatccttttatgggactgacatctgctatccatatcaaaaatatcagcaaagatcccagtgaacaaatgagtgagtcggtgctcgtcttaaagggtccccagggaagaatcaacagagctgtgtggggacccctgaataaaacaattataagtgctggtgaagatgctgtaatacgtatctgggatgctgagactggaaaggtactgaaggagtctgacaaagaaatcggtcataaaaagggtattacatcgctacaaaaatcagtggatggttcgcacttcattactggttctcttgataaatctgcaaagctctgggacatcagaagtttgacacttatcaagaactatacgaccgaacgacccgtgaatgctgtcacaatgtcgccgcttcttaatcatgtggttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="13004" stop="8362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12704" g_stop="12460" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11153" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="461" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11152" i_stop="9439" i_length="1714">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9438" g_stop="9311" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="589" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9310" i_stop="9041" i_length="270">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9040" g_stop="8921" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="709" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8920" i_stop="8754" i_length="167">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8753" g_stop="8664" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="799" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E702306" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12704" e_stop="12460"/>
          <exon e_start="11368" e_stop="11153"/>
          <exon e_start="9438" e_stop="9311"/>
          <exon e_start="9040" e_stop="8921"/>
          <exon e_start="8753" e_stop="8664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAACGTAAGTTTCTGGAACTCTAAGGTTGATCTTCTGTTGTGTTGTCTTGTTTAATTGTTGTTTTTTAACAATTAATTGTTGGGTTGTATTTCTGTTTGTGAAGTAAATATTGCCTTTGTGTACTCTTTCCTTTTAAATTGCGAACAATGAATTGGATTATTGTGAAAGCATCAAATAAGTTCCTTTTATGAGCTTTCAAGTATCTTGTGACAAGCTTCATGTCTCCAGTGTAGCTATTCTTAAGCCCACTGTGTTTCCTTTTCAGAGATGTGAATATTGGACTCTTTATGACCTCAAGTCAGAGCTATACAGATGCATTTTATTTGATTATGATCATATTAGCACATAGTTGGTTTTTAAATGACTTGGATATATCGTGAATTAATTTCTCAAGCTACCAATAAAGTAGCTATGATGGTTTTGCTGTATTCTTAATTAGTTATATTATGATTTGCTATGATTGACAATTTGACATCATTTATCAGATGTTTGTCTGTTCTGTCTTTGTGCTGATATTTTAGTTGTTGAGGCCGTTCCTGGTATGTCTGTGGTGGTTAGTATCATTGAAGAAACCTGTCATTTAAATATCAGCATATGAATAATTGTCTAAATATGTGGAGTGAAGGGACTGTTTCTTTGCATTCCGACTTACCAACTCAGGCCACCCAATTGTATATATGTCTGCACTGGCCCATGTTTTCAAACTGATCAGAATGGATCCCTCCTGGTACTGATCCTCCATCGGTAATAACAATACCCAACTTCCATGCTGGCACCTATGCTATCCACCAACACTTGCCAAAACCAACATTCATGCAGAAACCCAACATATAATTTACTCTCTATGATAAGTACTACAACCAGAATAGTGGAGCAAAACCATGTCCTGTCACTAGGAGTGTTCATGTTTATCAAGTTCGGAACTCCTCTATCACCGGCCACTTAGCATGATGCACTTGGGTATGTAAAGTGAATTTGTTTATGCATGTTGTAAGTTAACAGGCGACAGCTTACTCCCTAACTTCACCACAAAGGAGCTTAAAGGAACCAGTCCTGTTACAATCACATGTCCTTTAACTATAGAGTTACTAGTGCTACTTCTGAGTTAATTGATAATTCACTTTGATATGGAGCTTGGTTATGGGGTCTGGCGGCGAAGCAGATGATTTCTATCCCCCCCCCCCCCCCACTCTTTTTAAGTTCAGTTACCAAAGAAAAAATTGTTGTAGTCATATTATACTTCCCCTTTTGTTTCCTTTAAAGTCACATATCGTTAATAATTATCTTATTACTTTATCCATTATCCTTAATTCTATGTAAACCAGAACTTGAGTATTGGAAAAAAATGTACTGTAGACTATATCAAAAAGCAAAGATGACCACCATTAAAAACATGTAGGATTTATGTGCAGAAAATGGAAGGGTCTTGCTTTCTGTTCAATTATACAAGATTGGTAAAGGTATATAGCTTTAGGGAATATTTGTTGTCAAGAGTTAAGCCTAATATGTTTCCAGAGTTGTCACATCTAACACATTGAATATGCTTTGGAATTTGAGACGAAGGTATATGCCTTGTATAGTTTGTTATTGCTTCTCTGGTGGTTGCTGTCTTATACTAATTTCAAACGAGCCTATCTTCCATTATTTTGGGCACTTTCTGACTCTCATCTCATGATCTTGACATTCACTGTATCTAATAATAATCTTCTTATTTTAGAAATGAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAGGTACGTTAGTGTGTTTCAGCTTCATGGAAAATGTGCTGTCAATATGTCAAAGTTCGATAATATTTTGGGTTATTACTCTAGATACTTTATTTTATTATTATGAACAGTTTGGTGATTTATCAGGTCGCTTAGTTTTTGCATTATTTCACATCGCAGTATCTGCTTTGTTGTTTGCTTTGTCTTCCTTTCTTAAATATTAATTAGTTTTAAGATAGTTTTCCCTGTTCTTCGAAGCTAGTGTAATGTATTGACGGTCTTCCGAATTTGTAGACTGGAAAGGTACTGAAGGAGTCTGACAAAGAAATCGGTCATAAAAAGGGTATTACATCGCTACAAAAATCAGTGGATGGTTCGCACTTCATTACTGGTTCTCTTGATAAATCTGCAAAGGTAGCTCCTCATAGCCCTTGGAAATATGGCCATTGTTTCTTTATAAGTTCTTGCAACTACCTAGCAATATTTCATTTTGGATTTTCAGCTGCATATGTCCATATCCACTTTGTTTTTTTTTTCTTTTTAGAGTTCCTCTTTATTTCTAATCTCTGTCGATTTTCCAGCTCTGGGACATCAGAAGTTTGACACTTATCAAGAACTATACGACCGAACGACCCGTGAATGCTGTCACAATGTCGCCGCTTCTTAATCAT</genome_strand>
        <mrna_strand>CTCCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAG..............................................................................................................................................................................................................................................................................ACTGGAAAGGTACTGAAGGAGTCTGACAAAGAAATCGGTCATAAAAAGGGTATTACATCGCTACAAAAATCAGTGGATGGTTCGCACTTCATTACTGGTTCTCTTGATAAATCTGCAAAG.......................................................................................................................................................................CTCTGGGACATCAGAAGTTTGACACTTATCAAGAACTATACGACCGAACGACCCGTGAATGCTGTCACAATGTCGCCGCTTCTTAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451730" ref_strand="+" ref_description="SGN-E451730 [cSTS-14-E17]">
      <seq>gggccatgaaaggcccgttaacttttctaaagtaaacagagatggagatctgctcttctcttgcgccaaggaccattacccctaccgtttggtttgccgataaccggcgagcgccctcggaacttaccgtggccataacggtgccgtttggtgctgcgacgtttctcgggattcgtccaggctaataactggaagtgcggatcagactgcaatgttgtgggatgtccaaactggtacccagctgcacacattcacctttgactcccctgctaggtctgttgatttttcggttggcgataaactcgcagtgatcaccactgatccttttatgggactgacatctgctatccatgtcaaacgtatcagcgaagatcccagtgaacaaattagtgagtcggtgctcgtcttaaagggtccccagggaagaatcaacagagctgtgtggggacccctgaataaaacaattataagtgctggtgaagatgctgtaatacgtatctgggatgctgagactggaaagatactgaaggagtctgataaggaaatcggtcataaaaagggtattacgtcactacaaaaatcagtggatggttcgcacttcattactggttctcttgataaatctgcaaagctctgggacatcagaactttgacactcatcaagaactatacgaccgaacgaccagtgaatgctgtcactatgtcgccgcttcttatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="12923" stop="8364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12623" g_stop="12460" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11153" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="383" r_length="216" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11152" i_stop="9439" i_length="1714">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9438" g_stop="9311" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="511" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9310" i_stop="9041" i_length="270">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9040" g_stop="8921" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="631" r_length="120" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8920" i_stop="8754" i_length="167">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8753" g_stop="8664" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="720" r_length="89" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E451730" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12623" e_stop="12460"/>
          <exon e_start="11368" e_stop="11153"/>
          <exon e_start="9438" e_stop="9311"/>
          <exon e_start="9040" e_stop="8921"/>
          <exon e_start="8753" e_stop="8664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCCATGAAAGGC-CGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCA-TACCCCTACCGTTTGGTTTGCCGATAA-CGGCGAGCG-CCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAACGTAAGTTTCTGGAACTCTAAGGTTGATCTTCTGTTGTGTTGTCTTGTTTAATTGTTGTTTTTTAACAATTAATTGTTGGGTTGTATTTCTGTTTGTGAAGTAAATATTGCCTTTGTGTACTCTTTCCTTTTAAATTGCGAACAATGAATTGGATTATTGTGAAAGCATCAAATAAGTTCCTTTTATGAGCTTTCAAGTATCTTGTGACAAGCTTCATGTCTCCAGTGTAGCTATTCTTAAGCCCACTGTGTTTCCTTTTCAGAGATGTGAATATTGGACTCTTTATGACCTCAAGTCAGAGCTATACAGATGCATTTTATTTGATTATGATCATATTAGCACATAGTTGGTTTTTAAATGACTTGGATATATCGTGAATTAATTTCTCAAGCTACCAATAAAGTAGCTATGATGGTTTTGCTGTATTCTTAATTAGTTATATTATGATTTGCTATGATTGACAATTTGACATCATTTATCAGATGTTTGTCTGTTCTGTCTTTGTGCTGATATTTTAGTTGTTGAGGCCGTTCCTGGTATGTCTGTGGTGGTTAGTATCATTGAAGAAACCTGTCATTTAAATATCAGCATATGAATAATTGTCTAAATATGTGGAGTGAAGGGACTGTTTCTTTGCATTCCGACTTACCAACTCAGGCCACCCAATTGTATATATGTCTGCACTGGCCCATGTTTTCAAACTGATCAGAATGGATCCCTCCTGGTACTGATCCTCCATCGGTAATAACAATACCCAACTTCCATGCTGGCACCTATGCTATCCACCAACACTTGCCAAAACCAACATTCATGCAGAAACCCAACATATAATTTACTCTCTATGATAAGTACTACAACCAGAATAGTGGAGCAAAACCATGTCCTGTCACTAGGAGTGTTCATGTTTATCAAGTTCGGAACTCCTCTATCACCGGCCACTTAGCATGATGCACTTGGGTATGTAAAGTGAATTTGTTTATGCATGTTGTAAGTTAACAGGCGACAGCTTACTCCCTAACTTCACCACAAAGGAGCTTAAAGGAACCAGTCCTGTTACAATCACATGTCCTTTAACTATAGAGTTACTAGTGCTACTTCTGAGTTAATTGATAATTCACTTTGATATGGAGCTTGGTTATGGGGTCTGGCGGCGAAGCAGATGATTTCTATCCCCCCCCCCCCCCCACTCTTTTTAAGTTCAGTTACCAAAGAAAAAATTGTTGTAGTCATATTATACTTCCCCTTTTGTTTCCTTTAAAGTCACATATCGTTAATAATTATCTTATTACTTTATCCATTATCCTTAATTCTATGTAAACCAGAACTTGAGTATTGGAAAAAAATGTACTGTAGACTATATCAAAAAGCAAAGATGACCACCATTAAAAACATGTAGGATTTATGTGCAGAAAATGGAAGGGTCTTGCTTTCTGTTCAATTATACAAGATTGGTAAAGGTATATAGCTTTAGGGAATATTTGTTGTCAAGAGTTAAGCCTAATATGTTTCCAGAGTTGTCACATCTAACACATTGAATATGCTTTGGAATTTGAGACGAAGGTATATGCCTTGTATAGTTTGTTATTGCTTCTCTGGTGGTTGCTGTCTTATACTAATTTCAAACGAGCCTATCTTCCATTATTTTGGGCACTTTCTGACTCTCATCTCATGATCTTGACATTCACTGTATCTAATAATAATCTTCTTATTTTAGAAATGAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAGGTACGTTAGTGTGTTTCAGCTTCATGGAAAATGTGCTGTCAATATGTCAAAGTTCGATAATATTTTGGGTTATTACTCTAGATACTTTATTTTATTATTATGAACAGTTTGGTGATTTATCAGGTCGCTTAGTTTTTGCATTATTTCACATCGCAGTATCTGCTTTGTTGTTTGCTTTGTCTTCCTTTCTTAAATATTAATTAGTTTTAAGATAGTTTTCCCTGTTCTTCGAAGCTAGTGTAATGTATTGACGGTCTTCCGAATTTGTAGACTGGAAAGGTACTGAAGGAGTCTGACAAAGAAATCGGTCATAAAAAGGGTATTACATCGCTACAAAAATCAGTGGATGGTTCGCACTTCATTACTGGTTCTCTTGATAAATCTGCAAAGGTAGCTCCTCATAGCCCTTGGAAATATGGCCATTGTTTCTTTATAAGTTCTTGCAACTACCTAGCAATATTTCATTTTGGATTTTCAGCTGCATATGTCCATATCCACTTTGTTTTTTTTTTCTTTTTAGAGTTCCTCTTTATTTCTAATCTCTGTCGATTTTCCAGCTCTGGGACATCAGAAGTTTGACACTTATCAAGAACTATACGACCGAACGACCCGTGAATGCTGTCACAATGTCGCCGCTTCTTAATCAT</genome_strand>
        <mrna_strand>GGGCCATGAAAGGCCCGTTAACTTTTCTAAAGTA-AACAGAGATGGAGATCTGCTCTTCTCTTGCGCCAAGGACCATTACCCCTACCGTTTGGTTTGCCGATAACCGGCGAGCGCCCTCGGAACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGCGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTACCCAGCTGCACACATTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCGGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATGTCAAACGTATCAGCGAAGATCCCAGTGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAG..............................................................................................................................................................................................................................................................................ACTGGAAAGATACTGAAGGAGTCTGATAAGGAAATCGGTCATAAAAAGGGTATTACGTCACTACAAAAATCAGTGGATGGTTCGCACTTCATTACTGGTTCTCTTGATAAATCTGCAAAG.......................................................................................................................................................................CTCTGGGACATCAGAACTTTGACACTCATCAAGAACTATACGACCGAACGACCAGTGAATGCTGTCACTATGTCGCCGCTTCTT-ATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374651" ref_strand="-" ref_description="SGN-E374651 [TUS-15-L3](-)">
      <seq>tctccttttctaaagtacaacagagatggagatctgctcttctcttgcgctaaggaccatacccctaccgtttggtttgccgataacggcgagcgcctcggcacttaccgtggccataacggtgccgtttggtgctgtgacgtttctcgggattcgtccaggctaataactggaagtgcggatcagactgcaatgttgtgggatgtccaaactggtgcccagctgcacacgttcacctttgactcccctgctaggtctgttgatttttcagttggcgataaactcgcagtgatcaccactgatccttttatgggactgacatctgctatccatatcaaaaatatcagcaaagatcccagtgaacaaatgagtgagtcggtgctcgtcttaaagggtccccagggaagaatcaacagagctgtgtggggacccctgaataaaacaattataagtgctggtgaagatgctgtaatacgtatctgggatgctgagactggaaaggtactgaaggagtctgacaaagaaatcggtcataaaaagggtattacatcgctacaaaaatcagtggatggttcgcacttcattactggttctcttgataaatctgcaaagctctgggacatcagaagtttgacacttatcaagaactatacgaccgaacgacccgtgaatgctgtcacaatgtcgccgcttcttaatcatgtggttctgggaggtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="12903" stop="8362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12607" g_stop="12460" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11153" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="364" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11152" i_stop="9439" i_length="1714">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9438" g_stop="9311" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="492" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9310" i_stop="9041" i_length="270">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9040" g_stop="8921" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="612" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8920" i_stop="8754" i_length="167">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8753" g_stop="8664" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="702" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E374651" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374651" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12607" e_stop="12460"/>
          <exon e_start="11368" e_stop="11153"/>
          <exon e_start="9438" e_stop="9311"/>
          <exon e_start="9040" e_stop="8921"/>
          <exon e_start="8753" e_stop="8664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAACGTAAGTTTCTGGAACTCTAAGGTTGATCTTCTGTTGTGTTGTCTTGTTTAATTGTTGTTTTTTAACAATTAATTGTTGGGTTGTATTTCTGTTTGTGAAGTAAATATTGCCTTTGTGTACTCTTTCCTTTTAAATTGCGAACAATGAATTGGATTATTGTGAAAGCATCAAATAAGTTCCTTTTATGAGCTTTCAAGTATCTTGTGACAAGCTTCATGTCTCCAGTGTAGCTATTCTTAAGCCCACTGTGTTTCCTTTTCAGAGATGTGAATATTGGACTCTTTATGACCTCAAGTCAGAGCTATACAGATGCATTTTATTTGATTATGATCATATTAGCACATAGTTGGTTTTTAAATGACTTGGATATATCGTGAATTAATTTCTCAAGCTACCAATAAAGTAGCTATGATGGTTTTGCTGTATTCTTAATTAGTTATATTATGATTTGCTATGATTGACAATTTGACATCATTTATCAGATGTTTGTCTGTTCTGTCTTTGTGCTGATATTTTAGTTGTTGAGGCCGTTCCTGGTATGTCTGTGGTGGTTAGTATCATTGAAGAAACCTGTCATTTAAATATCAGCATATGAATAATTGTCTAAATATGTGGAGTGAAGGGACTGTTTCTTTGCATTCCGACTTACCAACTCAGGCCACCCAATTGTATATATGTCTGCACTGGCCCATGTTTTCAAACTGATCAGAATGGATCCCTCCTGGTACTGATCCTCCATCGGTAATAACAATACCCAACTTCCATGCTGGCACCTATGCTATCCACCAACACTTGCCAAAACCAACATTCATGCAGAAACCCAACATATAATTTACTCTCTATGATAAGTACTACAACCAGAATAGTGGAGCAAAACCATGTCCTGTCACTAGGAGTGTTCATGTTTATCAAGTTCGGAACTCCTCTATCACCGGCCACTTAGCATGATGCACTTGGGTATGTAAAGTGAATTTGTTTATGCATGTTGTAAGTTAACAGGCGACAGCTTACTCCCTAACTTCACCACAAAGGAGCTTAAAGGAACCAGTCCTGTTACAATCACATGTCCTTTAACTATAGAGTTACTAGTGCTACTTCTGAGTTAATTGATAATTCACTTTGATATGGAGCTTGGTTATGGGGTCTGGCGGCGAAGCAGATGATTTCTATCCCCCCCCCCCCCCCACTCTTTTTAAGTTCAGTTACCAAAGAAAAAATTGTTGTAGTCATATTATACTTCCCCTTTTGTTTCCTTTAAAGTCACATATCGTTAATAATTATCTTATTACTTTATCCATTATCCTTAATTCTATGTAAACCAGAACTTGAGTATTGGAAAAAAATGTACTGTAGACTATATCAAAAAGCAAAGATGACCACCATTAAAAACATGTAGGATTTATGTGCAGAAAATGGAAGGGTCTTGCTTTCTGTTCAATTATACAAGATTGGTAAAGGTATATAGCTTTAGGGAATATTTGTTGTCAAGAGTTAAGCCTAATATGTTTCCAGAGTTGTCACATCTAACACATTGAATATGCTTTGGAATTTGAGACGAAGGTATATGCCTTGTATAGTTTGTTATTGCTTCTCTGGTGGTTGCTGTCTTATACTAATTTCAAACGAGCCTATCTTCCATTATTTTGGGCACTTTCTGACTCTCATCTCATGATCTTGACATTCACTGTATCTAATAATAATCTTCTTATTTTAGAAATGAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAGGTACGTTAGTGTGTTTCAGCTTCATGGAAAATGTGCTGTCAATATGTCAAAGTTCGATAATATTTTGGGTTATTACTCTAGATACTTTATTTTATTATTATGAACAGTTTGGTGATTTATCAGGTCGCTTAGTTTTTGCATTATTTCACATCGCAGTATCTGCTTTGTTGTTTGCTTTGTCTTCCTTTCTTAAATATTAATTAGTTTTAAGATAGTTTTCCCTGTTCTTCGAAGCTAGTGTAATGTATTGACGGTCTTCCGAATTTGTAGACTGGAAAGGTACTGAAGGAGTCTGACAAAGAAATCGGTCATAAAAAGGGTATTACATCGCTACAAAAATCAGTGGATGGTTCGCACTTCATTACTGGTTCTCTTGATAAATCTGCAAAGGTAGCTCCTCATAGCCCTTGGAAATATGGCCATTGTTTCTTTATAAGTTCTTGCAACTACCTAGCAATATTTCATTTTGGATTTTCAGCTGCATATGTCCATATCCACTTTGTTTTTTTTTTCTTTTTAGAGTTCCTCTTTATTTCTAATCTCTGTCGATTTTCCAGCTCTGGGACATCAGAAGTTTGACACTTATCAAGAACTATACGACCGAACGACCCGTGAATGCTGTCACAATGTCGCCGCTTCTTAATCAT</genome_strand>
        <mrna_strand>TCTCCTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAG..............................................................................................................................................................................................................................................................................ACTGGAAAGGTACTGAAGGAGTCTGACAAAGAAATCGGTCATAAAAAGGGTATTACATCGCTACAAAAATCAGTGGATGGTTCGCACTTCATTACTGGTTCTCTTGATAAATCTGCAAAG.......................................................................................................................................................................CTCTGGGACATCAGAAGTTTGACACTTATCAAGAACTATACGACCGAACGACCCGTGAATGCTGTCACAATGTCGCCGCTTCTTAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315732" ref_strand="+" ref_description="SGN-E315732 [cTOA-26-A16]">
      <seq>acaatctcactgagagaatcactccggcgaccgactacaaacaacgatgaggccaatattgatgaagggccatgaaaggccgttaacttttctaaagtacaacagagatggagatctgctcttctcttgcgctaaggaccatacccctaccgtttggtttgccgataacggcgagcgcctcggcacttaccgtggccataacggtgccgtttggtgctgtgacgtttctcgggattcgtccaggctaataactggaagtgcggatcagactgcaatgttgtgggatgtccaaactggtgcccagctgcacacgttcacctttgactcccctgctaggtctgttgatttttcagttggcgataaactcgcagtgatcaccactgatccttttatgggactgacatctgctatccatatcaaaaatatcagcaaagatcccagtgaacaaatgagtgagtcggtgctcgtcttaaagggtccccagggaagaatcaacagagctgtgtggggacccctgaataaaacaattataagtgctggtgaagatgctgtaatacgtatctgggatgctgagactggaaaggtactgaaggagtctgacaaagaaatcggtcataaaaagggtattacatcgctacaaaaatcagtggatggttcgcacttcattactggttctcttgataaatctgcaaagctctgggacatcagaagtttgacacttatncagaactatacgaccgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="12989" stop="8404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12689" g_stop="12460" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11153" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="446" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11152" i_stop="9439" i_length="1714">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9438" g_stop="9311" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="574" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9310" i_stop="9041" i_length="270">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9040" g_stop="8921" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="694" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8920" i_stop="8754" i_length="167">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8753" g_stop="8704" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="744" r_length="50" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E315732" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12689" e_stop="12460"/>
          <exon e_start="11368" e_stop="11153"/>
          <exon e_start="9438" e_stop="9311"/>
          <exon e_start="9040" e_stop="8921"/>
          <exon e_start="8753" e_stop="8704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAACGTAAGTTTCTGGAACTCTAAGGTTGATCTTCTGTTGTGTTGTCTTGTTTAATTGTTGTTTTTTAACAATTAATTGTTGGGTTGTATTTCTGTTTGTGAAGTAAATATTGCCTTTGTGTACTCTTTCCTTTTAAATTGCGAACAATGAATTGGATTATTGTGAAAGCATCAAATAAGTTCCTTTTATGAGCTTTCAAGTATCTTGTGACAAGCTTCATGTCTCCAGTGTAGCTATTCTTAAGCCCACTGTGTTTCCTTTTCAGAGATGTGAATATTGGACTCTTTATGACCTCAAGTCAGAGCTATACAGATGCATTTTATTTGATTATGATCATATTAGCACATAGTTGGTTTTTAAATGACTTGGATATATCGTGAATTAATTTCTCAAGCTACCAATAAAGTAGCTATGATGGTTTTGCTGTATTCTTAATTAGTTATATTATGATTTGCTATGATTGACAATTTGACATCATTTATCAGATGTTTGTCTGTTCTGTCTTTGTGCTGATATTTTAGTTGTTGAGGCCGTTCCTGGTATGTCTGTGGTGGTTAGTATCATTGAAGAAACCTGTCATTTAAATATCAGCATATGAATAATTGTCTAAATATGTGGAGTGAAGGGACTGTTTCTTTGCATTCCGACTTACCAACTCAGGCCACCCAATTGTATATATGTCTGCACTGGCCCATGTTTTCAAACTGATCAGAATGGATCCCTCCTGGTACTGATCCTCCATCGGTAATAACAATACCCAACTTCCATGCTGGCACCTATGCTATCCACCAACACTTGCCAAAACCAACATTCATGCAGAAACCCAACATATAATTTACTCTCTATGATAAGTACTACAACCAGAATAGTGGAGCAAAACCATGTCCTGTCACTAGGAGTGTTCATGTTTATCAAGTTCGGAACTCCTCTATCACCGGCCACTTAGCATGATGCACTTGGGTATGTAAAGTGAATTTGTTTATGCATGTTGTAAGTTAACAGGCGACAGCTTACTCCCTAACTTCACCACAAAGGAGCTTAAAGGAACCAGTCCTGTTACAATCACATGTCCTTTAACTATAGAGTTACTAGTGCTACTTCTGAGTTAATTGATAATTCACTTTGATATGGAGCTTGGTTATGGGGTCTGGCGGCGAAGCAGATGATTTCTATCCCCCCCCCCCCCCCACTCTTTTTAAGTTCAGTTACCAAAGAAAAAATTGTTGTAGTCATATTATACTTCCCCTTTTGTTTCCTTTAAAGTCACATATCGTTAATAATTATCTTATTACTTTATCCATTATCCTTAATTCTATGTAAACCAGAACTTGAGTATTGGAAAAAAATGTACTGTAGACTATATCAAAAAGCAAAGATGACCACCATTAAAAACATGTAGGATTTATGTGCAGAAAATGGAAGGGTCTTGCTTTCTGTTCAATTATACAAGATTGGTAAAGGTATATAGCTTTAGGGAATATTTGTTGTCAAGAGTTAAGCCTAATATGTTTCCAGAGTTGTCACATCTAACACATTGAATATGCTTTGGAATTTGAGACGAAGGTATATGCCTTGTATAGTTTGTTATTGCTTCTCTGGTGGTTGCTGTCTTATACTAATTTCAAACGAGCCTATCTTCCATTATTTTGGGCACTTTCTGACTCTCATCTCATGATCTTGACATTCACTGTATCTAATAATAATCTTCTTATTTTAGAAATGAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAGGTACGTTAGTGTGTTTCAGCTTCATGGAAAATGTGCTGTCAATATGTCAAAGTTCGATAATATTTTGGGTTATTACTCTAGATACTTTATTTTATTATTATGAACAGTTTGGTGATTTATCAGGTCGCTTAGTTTTTGCATTATTTCACATCGCAGTATCTGCTTTGTTGTTTGCTTTGTCTTCCTTTCTTAAATATTAATTAGTTTTAAGATAGTTTTCCCTGTTCTTCGAAGCTAGTGTAATGTATTGACGGTCTTCCGAATTTGTAGACTGGAAAGGTACTGAAGGAGTCTGACAAAGAAATCGGTCATAAAAAGGGTATTACATCGCTACAAAAATCAGTGGATGGTTCGCACTTCATTACTGGTTCTCTTGATAAATCTGCAAAGGTAGCTCCTCATAGCCCTTGGAAATATGGCCATTGTTTCTTTATAAGTTCTTGCAACTACCTAGCAATATTTCATTTTGGATTTTCAGCTGCATATGTCCATATCCACTTTGTTTTTTTTTTCTTTTTAGAGTTCCTCTTTATTTCTAATCTCTGTCGATTTTCCAGCTCTGGGACATCAGAAGTTTGACACTTATCAAGAACTATACGACCGAACG</genome_strand>
        <mrna_strand>ACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAG..............................................................................................................................................................................................................................................................................ACTGGAAAGGTACTGAAGGAGTCTGACAAAGAAATCGGTCATAAAAAGGGTATTACATCGCTACAAAAATCAGTGGATGGTTCGCACTTCATTACTGGTTCTCTTGATAAATCTGCAAAG.......................................................................................................................................................................CTCTGGGACATCAGAAGTTTGACACTTATNCAGAACTATACGACCGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559780" ref_strand="+" ref_description="SGN-E559780 [19332]">
      <seq>ctccatcttttctcagcggcgaacttactccggcgtcgaacaacaatctcactgagggaattactccggcgaccggctacgaacaacgatgaggccaatattgatgaagggccatgaaaggccgttaacttttctaaagtacaacagagatggagatctgctcttctcttgcgccaaggaccatacccctaccgtttggtttgccgataacggcgagcgcctcggcacttaccgtggccataacggtgctgtttggtgctgcgacgtttctcgggattcgtccaggctaataactggaagtgcggatcagactgcaatgttgtgggatgtccaaactggtacccagctgcacacattcacctttgactcccctgctaggtctgttgatttttcggttggcgataaactcgcagtgatcaccactgatccttttatgggactgacatctgctatccatgtcaaacgtatcagcaaagatcccagtgaacaaattagtgagtcggtgctcgtcttaaagggtccccagggaagaatcaacagagctgtatggggacccctgaataaaacaattataagtgctggtgaagatgctgtaatacgtatctgggatgctgagactggaaaaatactgaaggagtctgacaaggaaatcggtcataaaaagggtattacgtcactacaaaaatcagtggatggttcgcacttcattactggttctcttggataaatctgcaaagctctgggacatcagaactttgacacttatcaggaactata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="13031" stop="8414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12731" g_stop="12460" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11153" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="488" r_length="216" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11152" i_stop="9439" i_length="1714">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9438" g_stop="9311" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="616" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9310" i_stop="9041" i_length="270">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9040" g_stop="8921" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="737" r_length="121" r_score="0.942"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8920" i_stop="8754" i_length="167">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8753" g_stop="8714" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="777" r_length="40" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E559780" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12731" e_stop="12460"/>
          <exon e_start="11368" e_stop="11153"/>
          <exon e_start="9438" e_stop="9311"/>
          <exon e_start="9040" e_stop="8921"/>
          <exon e_start="8753" e_stop="8714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCATCTTTCCTCAGCGGCGAACTTACTCCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAACGTAAGTTTCTGGAACTCTAAGGTTGATCTTCTGTTGTGTTGTCTTGTTTAATTGTTGTTTTTTAACAATTAATTGTTGGGTTGTATTTCTGTTTGTGAAGTAAATATTGCCTTTGTGTACTCTTTCCTTTTAAATTGCGAACAATGAATTGGATTATTGTGAAAGCATCAAATAAGTTCCTTTTATGAGCTTTCAAGTATCTTGTGACAAGCTTCATGTCTCCAGTGTAGCTATTCTTAAGCCCACTGTGTTTCCTTTTCAGAGATGTGAATATTGGACTCTTTATGACCTCAAGTCAGAGCTATACAGATGCATTTTATTTGATTATGATCATATTAGCACATAGTTGGTTTTTAAATGACTTGGATATATCGTGAATTAATTTCTCAAGCTACCAATAAAGTAGCTATGATGGTTTTGCTGTATTCTTAATTAGTTATATTATGATTTGCTATGATTGACAATTTGACATCATTTATCAGATGTTTGTCTGTTCTGTCTTTGTGCTGATATTTTAGTTGTTGAGGCCGTTCCTGGTATGTCTGTGGTGGTTAGTATCATTGAAGAAACCTGTCATTTAAATATCAGCATATGAATAATTGTCTAAATATGTGGAGTGAAGGGACTGTTTCTTTGCATTCCGACTTACCAACTCAGGCCACCCAATTGTATATATGTCTGCACTGGCCCATGTTTTCAAACTGATCAGAATGGATCCCTCCTGGTACTGATCCTCCATCGGTAATAACAATACCCAACTTCCATGCTGGCACCTATGCTATCCACCAACACTTGCCAAAACCAACATTCATGCAGAAACCCAACATATAATTTACTCTCTATGATAAGTACTACAACCAGAATAGTGGAGCAAAACCATGTCCTGTCACTAGGAGTGTTCATGTTTATCAAGTTCGGAACTCCTCTATCACCGGCCACTTAGCATGATGCACTTGGGTATGTAAAGTGAATTTGTTTATGCATGTTGTAAGTTAACAGGCGACAGCTTACTCCCTAACTTCACCACAAAGGAGCTTAAAGGAACCAGTCCTGTTACAATCACATGTCCTTTAACTATAGAGTTACTAGTGCTACTTCTGAGTTAATTGATAATTCACTTTGATATGGAGCTTGGTTATGGGGTCTGGCGGCGAAGCAGATGATTTCTATCCCCCCCCCCCCCCCACTCTTTTTAAGTTCAGTTACCAAAGAAAAAATTGTTGTAGTCATATTATACTTCCCCTTTTGTTTCCTTTAAAGTCACATATCGTTAATAATTATCTTATTACTTTATCCATTATCCTTAATTCTATGTAAACCAGAACTTGAGTATTGGAAAAAAATGTACTGTAGACTATATCAAAAAGCAAAGATGACCACCATTAAAAACATGTAGGATTTATGTGCAGAAAATGGAAGGGTCTTGCTTTCTGTTCAATTATACAAGATTGGTAAAGGTATATAGCTTTAGGGAATATTTGTTGTCAAGAGTTAAGCCTAATATGTTTCCAGAGTTGTCACATCTAACACATTGAATATGCTTTGGAATTTGAGACGAAGGTATATGCCTTGTATAGTTTGTTATTGCTTCTCTGGTGGTTGCTGTCTTATACTAATTTCAAACGAGCCTATCTTCCATTATTTTGGGCACTTTCTGACTCTCATCTCATGATCTTGACATTCACTGTATCTAATAATAATCTTCTTATTTTAGAAATGAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAGGTACGTTAGTGTGTTTCAGCTTCATGGAAAATGTGCTGTCAATATGTCAAAGTTCGATAATATTTTGGGTTATTACTCTAGATACTTTATTTTATTATTATGAACAGTTTGGTGATTTATCAGGTCGCTTAGTTTTTGCATTATTTCACATCGCAGTATCTGCTTTGTTGTTTGCTTTGTCTTCCTTTCTTAAATATTAATTAGTTTTAAGATAGTTTTCCCTGTTCTTCGAAGCTAGTGTAATGTATTGACGGTCTTCCGAATTTGTAGACTGGAAAGGTACTGAAGGAGTCTGACAAAGAAATCGGTCATAAAAAGGGTATTACATCGCTACAAAAATCAGTGGATGGTTCGCACTTCATTACTGGTTCTCTT-GATAAATCTGCAAAGGTAGCTCCTCATAGCCCTTGGAAATATGGCCATTGTTTCTTTATAAGTTCTTGCAACTACCTAGCAATATTTCATTTTGGATTTTCAGCTGCATATGTCCATATCCACTTTGTTTTTTTTTTCTTTTTAGAGTTCCTCTTTATTTCTAATCTCTGTCGATTTTCCAGCTCTGGGACATCAGAAGTTTGACACTTATCAAGAACTATA</genome_strand>
        <mrna_strand>CTCCATCTTTTCTCAGCGGCGAACTTACTCCGGCGTCGAACAACAATCTCACTGAGGGAATTACTCCGGCGACCGGCTACGAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCCAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCTGTTTGGTGCTGCGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTACCCAGCTGCACACATTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCGGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATGTCAAACGTATCAGCAAAGATCCCAGTGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTATGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAG..............................................................................................................................................................................................................................................................................ACTGGAAAAATACTGAAGGAGTCTGACAAGGAAATCGGTCATAAAAAGGGTATTACGTCACTACAAAAATCAGTGGATGGTTCGCACTTCATTACTGGTTCTCTTGGATAAATCTGCAAAG.......................................................................................................................................................................CTCTGGGACATCAGAACTTTGACACTTATCAGGAACTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579453" ref_strand="+" ref_description="SGN-E579453 [86582]">
      <seq>ctccggcgaccggctacgaacaacgatgaggccaatattgatgaagggccatgaaaggccgttaacttttctaaagtacaacagagatggagatctgctcttctcttgcgccaaggaccatacccctaccgtttggtttgccgataacggcgagcgcctcggaacttaccgtggccataacggtgccgtttggtgctgcgacgtttctcgggattcgtccagactaataactggaagtgcggatcagactgcaatgttgtgggatgtccaaactggtacccagctgcacacattcacctttgactcccctgctaggtctgttgatttttcggttggcgataaactcgcagtgatcaccactgatccttttatgggactgacatctgctatccatgtcaaacgtatcagcaaagatcccagtgaacaaattagtgagtcggtgcttgtcttaaagggtccccagggaagaatcaacagagctgtgtggggacccctgaataaaacaattataagtgccggtgaaagatgctgtaatacgtatctgggatgctgaggactggaaagatactgaaggagtctgattaaggaaatcggtcataaaaagggtattacgtcactacaaaaaatcagtggatggttcacacttcattactggttctcttgataaatctgacgaagctctggggacatccagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="12968" stop="8619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12668" g_stop="12460" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11153" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="425" r_length="216" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11152" i_stop="9439" i_length="1714">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.964" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9438" g_stop="9311" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="554" r_length="129" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9310" i_stop="9041" i_length="270">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9040" g_stop="8921" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="678" r_length="124" r_score="0.875"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8920" i_stop="8754" i_length="167">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8753" g_stop="8737" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="697" r_length="19" r_score="0.706"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E579453" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12668" e_stop="12460"/>
          <exon e_start="11368" e_stop="11153"/>
          <exon e_start="9438" e_stop="9311"/>
          <exon e_start="9040" e_stop="8921"/>
          <exon e_start="8753" e_stop="8737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAACGTAAGTTTCTGGAACTCTAAGGTTGATCTTCTGTTGTGTTGTCTTGTTTAATTGTTGTTTTTTAACAATTAATTGTTGGGTTGTATTTCTGTTTGTGAAGTAAATATTGCCTTTGTGTACTCTTTCCTTTTAAATTGCGAACAATGAATTGGATTATTGTGAAAGCATCAAATAAGTTCCTTTTATGAGCTTTCAAGTATCTTGTGACAAGCTTCATGTCTCCAGTGTAGCTATTCTTAAGCCCACTGTGTTTCCTTTTCAGAGATGTGAATATTGGACTCTTTATGACCTCAAGTCAGAGCTATACAGATGCATTTTATTTGATTATGATCATATTAGCACATAGTTGGTTTTTAAATGACTTGGATATATCGTGAATTAATTTCTCAAGCTACCAATAAAGTAGCTATGATGGTTTTGCTGTATTCTTAATTAGTTATATTATGATTTGCTATGATTGACAATTTGACATCATTTATCAGATGTTTGTCTGTTCTGTCTTTGTGCTGATATTTTAGTTGTTGAGGCCGTTCCTGGTATGTCTGTGGTGGTTAGTATCATTGAAGAAACCTGTCATTTAAATATCAGCATATGAATAATTGTCTAAATATGTGGAGTGAAGGGACTGTTTCTTTGCATTCCGACTTACCAACTCAGGCCACCCAATTGTATATATGTCTGCACTGGCCCATGTTTTCAAACTGATCAGAATGGATCCCTCCTGGTACTGATCCTCCATCGGTAATAACAATACCCAACTTCCATGCTGGCACCTATGCTATCCACCAACACTTGCCAAAACCAACATTCATGCAGAAACCCAACATATAATTTACTCTCTATGATAAGTACTACAACCAGAATAGTGGAGCAAAACCATGTCCTGTCACTAGGAGTGTTCATGTTTATCAAGTTCGGAACTCCTCTATCACCGGCCACTTAGCATGATGCACTTGGGTATGTAAAGTGAATTTGTTTATGCATGTTGTAAGTTAACAGGCGACAGCTTACTCCCTAACTTCACCACAAAGGAGCTTAAAGGAACCAGTCCTGTTACAATCACATGTCCTTTAACTATAGAGTTACTAGTGCTACTTCTGAGTTAATTGATAATTCACTTTGATATGGAGCTTGGTTATGGGGTCTGGCGGCGAAGCAGATGATTTCTATCCCCCCCCCCCCCCCACTCTTTTTAAGTTCAGTTACCAAAGAAAAAATTGTTGTAGTCATATTATACTTCCCCTTTTGTTTCCTTTAAAGTCACATATCGTTAATAATTATCTTATTACTTTATCCATTATCCTTAATTCTATGTAAACCAGAACTTGAGTATTGGAAAAAAATGTACTGTAGACTATATCAAAAAGCAAAGATGACCACCATTAAAAACATGTAGGATTTATGTGCAGAAAATGGAAGGGTCTTGCTTTCTGTTCAATTATACAAGATTGGTAAAGGTATATAGCTTTAGGGAATATTTGTTGTCAAGAGTTAAGCCTAATATGTTTCCAGAGTTGTCACATCTAACACATTGAATATGCTTTGGAATTTGAGACGAAGGTATATGCCTTGTATAGTTTGTTATTGCTTCTCTGGTGGTTGCTGTCTTATACTAATTTCAAACGAGCCTATCTTCCATTATTTTGGGCACTTTCTGACTCTCATCTCATGATCTTGACATTCACTGTATCTAATAATAATCTTCTTATTTTAGAAATGAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTG-AAGATGCTGTAATACGTATCTGGGATGCTGAGGTACGTTAGTGTGTTTCAGCTTCATGGAAAATGTGCTGTCAATATGTCAAAGTTCGATAATATTTTGGGTTATTACTCTAGATACTTTATTTTATTATTATGAACAGTTTGGTGATTTATCAGGTCGCTTAGTTTTTGCATTATTTCACATCGCAGTATCTGCTTTGTTGTTTGCTTTGTCTTCCTTTCTTAAATATTAATTAGTTTTAAGATAGTTTTCCCTGTTCTTCGAAGCTAGTGTAATGTATTGACGGTCTTCCGAATTTGTAG-ACTGGAAAGGTACTGAAGGAGTCTGA-CAAAGAAATCGGTCATAAAAAGGGTATTACATCGCTAC-AAAAATCAGTGGATGGTTCGCACTTCATTACTGGTTCTCTTGATAAATCTG-CAAAGGTAGCTCCTCATAGCCCTTGGAAATATGGCCATTGTTTCTTTATAAGTTCTTGCAACTACCTAGCAATATTTCATTTTGGATTTTCAGCTGCATATGTCCATATCCACTTTGTTTTTTTTTTCTTTTTAGAGTTCCTCTTTATTTCTAATCTCTGTCGATTTTCCAGCTCT-GGGACAT-CAGAAG</genome_strand>
        <mrna_strand>CTCCGGCGACCGGCTACGAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCCAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGAACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGCGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCGTCCAGACTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTACCCAGCTGCACACATTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCGGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATGTCAAACGTATCAGCAAAGATCCCAGTGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTAGTGAGTCGGTGCTTGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCCGGTGAAAGATGCTGTAATACGTATCTGGGATGCTGAG..............................................................................................................................................................................................................................................................................GACTGGAAAGATACTGAAGGAGTCTGATTAAGGAAATCGGTCATAAAAAGGGTATTACGTCACTACAAAAAATCAGTGGATGGTTCACACTTCATTACTGGTTCTCTTGATAAATCTGACGAAG.......................................................................................................................................................................CTCTGGGGACATCCAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467441" ref_strand="+" ref_description="SGN-E467441 [cSTB-49-A13]">
      <seq>ctttttctctctccatcttttctcagcggcgaacttactccggcgacgaacaacaatctcactgagggaatcactccggcgaccggctacgaacaacgatgaggccaatattgatgaagggccatgaaaggccgttaacttttctaaagtacaacagagatggagatctgctcttctcttgcgccaaggaccatacccctaccgtttggtttgccgataacggcgagcgcctcggaacttaccgtggccataacggtgctgtttggtgctgcgacgtttctcgggattcgtccagactaataactggaagtgcggatcagactgcaatgttgtgggatgtccaaactggtacccagctgcacacattcacctttgactcccctgctaggtctgttgatttttcggttggcgataaactcgcagtgatcaccactgatccttttatgggactgacatctgctatccatgtcaaacgtatcagcgaagatcccagtgaacaaattagtgagtcggtgcttgtcttaaagggtccccagggaagaatcaacagagctgtgtggggacccctgaataaaacaattataagtgctggtgaagatgctgtaatacgtatctgggatgctgagactggaaagatactgaaggagtctgataaggaaatcggtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="13041" stop="8699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12741" g_stop="12460" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11153" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="498" r_length="216" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11152" i_stop="9439" i_length="1714">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.964" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9438" g_stop="9311" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="626" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9310" i_stop="9041" i_length="270">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9040" g_stop="8999" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="668" r_length="42" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E467441" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12741" e_stop="12460"/>
          <exon e_start="11368" e_stop="11153"/>
          <exon e_start="9438" e_stop="9311"/>
          <exon e_start="9040" e_stop="8999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGTCTCTCTCCATCTTTCCTCAGCGGCGAACTTACTCCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAACGTAAGTTTCTGGAACTCTAAGGTTGATCTTCTGTTGTGTTGTCTTGTTTAATTGTTGTTTTTTAACAATTAATTGTTGGGTTGTATTTCTGTTTGTGAAGTAAATATTGCCTTTGTGTACTCTTTCCTTTTAAATTGCGAACAATGAATTGGATTATTGTGAAAGCATCAAATAAGTTCCTTTTATGAGCTTTCAAGTATCTTGTGACAAGCTTCATGTCTCCAGTGTAGCTATTCTTAAGCCCACTGTGTTTCCTTTTCAGAGATGTGAATATTGGACTCTTTATGACCTCAAGTCAGAGCTATACAGATGCATTTTATTTGATTATGATCATATTAGCACATAGTTGGTTTTTAAATGACTTGGATATATCGTGAATTAATTTCTCAAGCTACCAATAAAGTAGCTATGATGGTTTTGCTGTATTCTTAATTAGTTATATTATGATTTGCTATGATTGACAATTTGACATCATTTATCAGATGTTTGTCTGTTCTGTCTTTGTGCTGATATTTTAGTTGTTGAGGCCGTTCCTGGTATGTCTGTGGTGGTTAGTATCATTGAAGAAACCTGTCATTTAAATATCAGCATATGAATAATTGTCTAAATATGTGGAGTGAAGGGACTGTTTCTTTGCATTCCGACTTACCAACTCAGGCCACCCAATTGTATATATGTCTGCACTGGCCCATGTTTTCAAACTGATCAGAATGGATCCCTCCTGGTACTGATCCTCCATCGGTAATAACAATACCCAACTTCCATGCTGGCACCTATGCTATCCACCAACACTTGCCAAAACCAACATTCATGCAGAAACCCAACATATAATTTACTCTCTATGATAAGTACTACAACCAGAATAGTGGAGCAAAACCATGTCCTGTCACTAGGAGTGTTCATGTTTATCAAGTTCGGAACTCCTCTATCACCGGCCACTTAGCATGATGCACTTGGGTATGTAAAGTGAATTTGTTTATGCATGTTGTAAGTTAACAGGCGACAGCTTACTCCCTAACTTCACCACAAAGGAGCTTAAAGGAACCAGTCCTGTTACAATCACATGTCCTTTAACTATAGAGTTACTAGTGCTACTTCTGAGTTAATTGATAATTCACTTTGATATGGAGCTTGGTTATGGGGTCTGGCGGCGAAGCAGATGATTTCTATCCCCCCCCCCCCCCCACTCTTTTTAAGTTCAGTTACCAAAGAAAAAATTGTTGTAGTCATATTATACTTCCCCTTTTGTTTCCTTTAAAGTCACATATCGTTAATAATTATCTTATTACTTTATCCATTATCCTTAATTCTATGTAAACCAGAACTTGAGTATTGGAAAAAAATGTACTGTAGACTATATCAAAAAGCAAAGATGACCACCATTAAAAACATGTAGGATTTATGTGCAGAAAATGGAAGGGTCTTGCTTTCTGTTCAATTATACAAGATTGGTAAAGGTATATAGCTTTAGGGAATATTTGTTGTCAAGAGTTAAGCCTAATATGTTTCCAGAGTTGTCACATCTAACACATTGAATATGCTTTGGAATTTGAGACGAAGGTATATGCCTTGTATAGTTTGTTATTGCTTCTCTGGTGGTTGCTGTCTTATACTAATTTCAAACGAGCCTATCTTCCATTATTTTGGGCACTTTCTGACTCTCATCTCATGATCTTGACATTCACTGTATCTAATAATAATCTTCTTATTTTAGAAATGAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAGGTACGTTAGTGTGTTTCAGCTTCATGGAAAATGTGCTGTCAATATGTCAAAGTTCGATAATATTTTGGGTTATTACTCTAGATACTTTATTTTATTATTATGAACAGTTTGGTGATTTATCAGGTCGCTTAGTTTTTGCATTATTTCACATCGCAGTATCTGCTTTGTTGTTTGCTTTGTCTTCCTTTCTTAAATATTAATTAGTTTTAAGATAGTTTTCCCTGTTCTTCGAAGCTAGTGTAATGTATTGACGGTCTTCCGAATTTGTAGACTGGAAAGGTACTGAAGGAGTCTGACAAAGAAATCGGTCAT</genome_strand>
        <mrna_strand>CTTTTTCTCTCTCCATCTTTTCTCAGCGGCGAACTTACTCCGGCGACGAACAACAATCTCACTGAGGGAATCACTCCGGCGACCGGCTACGAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCCAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGAACTTACCGTGGCCATAACGGTGCTGTTTGGTGCTGCGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCGTCCAGACTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTACCCAGCTGCACACATTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCGGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATGTCAAACGTATCAGCGAAGATCCCAGTGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTAGTGAGTCGGTGCTTGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAG..............................................................................................................................................................................................................................................................................ACTGGAAAGATACTGAAGGAGTCTGATAAGGAAATCGGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484624" ref_strand="+" ref_description="SGN-E484624 [cSTE-14-G9]">
      <seq>gtctttttctctctccatcttttctcagcggcgaacttactccggcgacgaacaacaatctcactgagggaatcactccggcgaccggctacgaacaacgatgaggccaatattgatgaagggccatgaaaggccgttaacttttctaaagtacaacagagatggagatctgctcttctcttgcgccaaggaccatacccctaccgtttggtttgccgataacggcgagcgcctcggaacttaccgtggccataacggtgctgtttggtgctgcgacgtttctcgggattcgtccagactaataactggaagtgcggatcagactgcaatgttgtgggatgtccaaactggtacccagctgcacacattcacctttgactcccctgctaggtctgttgatttttcggttggcgataaactcgcagtgatcaccactgatccttttatgggactgacatctgctatccatgtcaaacgtatcagcgaagatcccagtgaacaaattagtgagtcggtgcttgtcttaaagggtccccagggaagaatcaacagagctgtgtggggacccctgaataaaacaattataagtgctggtgaagatgctgntatacgtatctgggatgctgagactggaaagatactgaaggagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="13043" stop="9011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12743" g_stop="12460" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11153" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="500" r_length="216" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11152" i_stop="9439" i_length="1714">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.964" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9438" g_stop="9311" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="628" r_length="128" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9310" i_stop="9041" i_length="270">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9040" g_stop="9017" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="652" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E484624" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12743" e_stop="12460"/>
          <exon e_start="11368" e_stop="11153"/>
          <exon e_start="9438" e_stop="9311"/>
          <exon e_start="9040" e_stop="9017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTCGTCTCTCTCCATCTTTCCTCAGCGGCGAACTTACTCCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAACGTAAGTTTCTGGAACTCTAAGGTTGATCTTCTGTTGTGTTGTCTTGTTTAATTGTTGTTTTTTAACAATTAATTGTTGGGTTGTATTTCTGTTTGTGAAGTAAATATTGCCTTTGTGTACTCTTTCCTTTTAAATTGCGAACAATGAATTGGATTATTGTGAAAGCATCAAATAAGTTCCTTTTATGAGCTTTCAAGTATCTTGTGACAAGCTTCATGTCTCCAGTGTAGCTATTCTTAAGCCCACTGTGTTTCCTTTTCAGAGATGTGAATATTGGACTCTTTATGACCTCAAGTCAGAGCTATACAGATGCATTTTATTTGATTATGATCATATTAGCACATAGTTGGTTTTTAAATGACTTGGATATATCGTGAATTAATTTCTCAAGCTACCAATAAAGTAGCTATGATGGTTTTGCTGTATTCTTAATTAGTTATATTATGATTTGCTATGATTGACAATTTGACATCATTTATCAGATGTTTGTCTGTTCTGTCTTTGTGCTGATATTTTAGTTGTTGAGGCCGTTCCTGGTATGTCTGTGGTGGTTAGTATCATTGAAGAAACCTGTCATTTAAATATCAGCATATGAATAATTGTCTAAATATGTGGAGTGAAGGGACTGTTTCTTTGCATTCCGACTTACCAACTCAGGCCACCCAATTGTATATATGTCTGCACTGGCCCATGTTTTCAAACTGATCAGAATGGATCCCTCCTGGTACTGATCCTCCATCGGTAATAACAATACCCAACTTCCATGCTGGCACCTATGCTATCCACCAACACTTGCCAAAACCAACATTCATGCAGAAACCCAACATATAATTTACTCTCTATGATAAGTACTACAACCAGAATAGTGGAGCAAAACCATGTCCTGTCACTAGGAGTGTTCATGTTTATCAAGTTCGGAACTCCTCTATCACCGGCCACTTAGCATGATGCACTTGGGTATGTAAAGTGAATTTGTTTATGCATGTTGTAAGTTAACAGGCGACAGCTTACTCCCTAACTTCACCACAAAGGAGCTTAAAGGAACCAGTCCTGTTACAATCACATGTCCTTTAACTATAGAGTTACTAGTGCTACTTCTGAGTTAATTGATAATTCACTTTGATATGGAGCTTGGTTATGGGGTCTGGCGGCGAAGCAGATGATTTCTATCCCCCCCCCCCCCCCACTCTTTTTAAGTTCAGTTACCAAAGAAAAAATTGTTGTAGTCATATTATACTTCCCCTTTTGTTTCCTTTAAAGTCACATATCGTTAATAATTATCTTATTACTTTATCCATTATCCTTAATTCTATGTAAACCAGAACTTGAGTATTGGAAAAAAATGTACTGTAGACTATATCAAAAAGCAAAGATGACCACCATTAAAAACATGTAGGATTTATGTGCAGAAAATGGAAGGGTCTTGCTTTCTGTTCAATTATACAAGATTGGTAAAGGTATATAGCTTTAGGGAATATTTGTTGTCAAGAGTTAAGCCTAATATGTTTCCAGAGTTGTCACATCTAACACATTGAATATGCTTTGGAATTTGAGACGAAGGTATATGCCTTGTATAGTTTGTTATTGCTTCTCTGGTGGTTGCTGTCTTATACTAATTTCAAACGAGCCTATCTTCCATTATTTTGGGCACTTTCTGACTCTCATCTCATGATCTTGACATTCACTGTATCTAATAATAATCTTCTTATTTTAGAAATGAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAGGTACGTTAGTGTGTTTCAGCTTCATGGAAAATGTGCTGTCAATATGTCAAAGTTCGATAATATTTTGGGTTATTACTCTAGATACTTTATTTTATTATTATGAACAGTTTGGTGATTTATCAGGTCGCTTAGTTTTTGCATTATTTCACATCGCAGTATCTGCTTTGTTGTTTGCTTTGTCTTCCTTTCTTAAATATTAATTAGTTTTAAGATAGTTTTCCCTGTTCTTCGAAGCTAGTGTAATGTATTGACGGTCTTCCGAATTTGTAGACTGGAAAGGTACTGAAGGAGTCT</genome_strand>
        <mrna_strand>GTCTTTTTCTCTCTCCATCTTTTCTCAGCGGCGAACTTACTCCGGCGACGAACAACAATCTCACTGAGGGAATCACTCCGGCGACCGGCTACGAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCCAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGAACTTACCGTGGCCATAACGGTGCTGTTTGGTGCTGCGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCGTCCAGACTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTACCCAGCTGCACACATTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCGGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATGTCAAACGTATCAGCGAAGATCCCAGTGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTAGTGAGTCGGTGCTTGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGNTATACGTATCTGGGATGCTGAG..............................................................................................................................................................................................................................................................................ACTGGAAAGATACTGAAGGAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200123" ref_strand="+" ref_description="SGN-E200123 [cLEB-7-L1]">
      <seq>gcacgagcggcgacgaacaacaatctcactgagagaatcactccggcgaccgactacaaacaacgatgaggccaatattgatgaagggccatgaaaggccgttaacttttctaaagtacaacagagatggagatctgctcttctcttgcgctaaggaccatacccctaccgtttggtttgccgataacggcgagcgcctcggcacttaccgtggccataacggtgccgtttggtgctgtgacgtttctcgggattcgtccaggctaataactggaagtgcggatcagactgcaatgttgtgggatgtccaaactggtgcccagctgcacacgttcacctttgactcccctgctaggtctgttgatttttcagttggcgataaactcgcagtgatcaccactgatccttttatgggactgacatctgctatccatatcaaaaatatcagcaaagatcccagtgaacaaatgagtgagtcggtgctcgtcttaaagggtccccagggaagaatcaacagagctgtgtggggacccctgaataaaacaattataagtgctggtgaagatgctgtaatacgtatctgggatgctgagactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="13001" stop="9011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12707" g_stop="12460" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11153" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="465" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11152" i_stop="9439" i_length="1714">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9438" g_stop="9311" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="593" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E200123" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12707" e_stop="12460"/>
          <exon e_start="11368" e_stop="11153"/>
          <exon e_start="9438" e_stop="9311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAC-TCCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAACGTAAGTTTCTGGAACTCTAAGGTTGATCTTCTGTTGTGTTGTCTTGTTTAATTGTTGTTTTTTAACAATTAATTGTTGGGTTGTATTTCTGTTTGTGAAGTAAATATTGCCTTTGTGTACTCTTTCCTTTTAAATTGCGAACAATGAATTGGATTATTGTGAAAGCATCAAATAAGTTCCTTTTATGAGCTTTCAAGTATCTTGTGACAAGCTTCATGTCTCCAGTGTAGCTATTCTTAAGCCCACTGTGTTTCCTTTTCAGAGATGTGAATATTGGACTCTTTATGACCTCAAGTCAGAGCTATACAGATGCATTTTATTTGATTATGATCATATTAGCACATAGTTGGTTTTTAAATGACTTGGATATATCGTGAATTAATTTCTCAAGCTACCAATAAAGTAGCTATGATGGTTTTGCTGTATTCTTAATTAGTTATATTATGATTTGCTATGATTGACAATTTGACATCATTTATCAGATGTTTGTCTGTTCTGTCTTTGTGCTGATATTTTAGTTGTTGAGGCCGTTCCTGGTATGTCTGTGGTGGTTAGTATCATTGAAGAAACCTGTCATTTAAATATCAGCATATGAATAATTGTCTAAATATGTGGAGTGAAGGGACTGTTTCTTTGCATTCCGACTTACCAACTCAGGCCACCCAATTGTATATATGTCTGCACTGGCCCATGTTTTCAAACTGATCAGAATGGATCCCTCCTGGTACTGATCCTCCATCGGTAATAACAATACCCAACTTCCATGCTGGCACCTATGCTATCCACCAACACTTGCCAAAACCAACATTCATGCAGAAACCCAACATATAATTTACTCTCTATGATAAGTACTACAACCAGAATAGTGGAGCAAAACCATGTCCTGTCACTAGGAGTGTTCATGTTTATCAAGTTCGGAACTCCTCTATCACCGGCCACTTAGCATGATGCACTTGGGTATGTAAAGTGAATTTGTTTATGCATGTTGTAAGTTAACAGGCGACAGCTTACTCCCTAACTTCACCACAAAGGAGCTTAAAGGAACCAGTCCTGTTACAATCACATGTCCTTTAACTATAGAGTTACTAGTGCTACTTCTGAGTTAATTGATAATTCACTTTGATATGGAGCTTGGTTATGGGGTCTGGCGGCGAAGCAGATGATTTCTATCCCCCCCCCCCCCCCACTCTTTTTAAGTTCAGTTACCAAAGAAAAAATTGTTGTAGTCATATTATACTTCCCCTTTTGTTTCCTTTAAAGTCACATATCGTTAATAATTATCTTATTACTTTATCCATTATCCTTAATTCTATGTAAACCAGAACTTGAGTATTGGAAAAAAATGTACTGTAGACTATATCAAAAAGCAAAGATGACCACCATTAAAAACATGTAGGATTTATGTGCAGAAAATGGAAGGGTCTTGCTTTCTGTTCAATTATACAAGATTGGTAAAGGTATATAGCTTTAGGGAATATTTGTTGTCAAGAGTTAAGCCTAATATGTTTCCAGAGTTGTCACATCTAACACATTGAATATGCTTTGGAATTTGAGACGAAGGTATATGCCTTGTATAGTTTGTTATTGCTTCTCTGGTGGTTGCTGTCTTATACTAATTTCAAACGAGCCTATCTTCCATTATTTTGGGCACTTTCTGACTCTCATCTCATGATCTTGACATTCACTGTATCTAATAATAATCTTCTTATTTTAGAAATGAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAG</genome_strand>
        <mrna_strand>GCACGAGCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484734" ref_strand="+" ref_description="SGN-E484734 [cSTE-14-F10]">
      <seq>gtctttttctctctccatcttttctcagcggcgaacttactccggcgacgaacaacaatctcactgagggaatcactccggcgaccggctacgaacaacgatgaggccaatattgatgaagggccatgaaaggccgttaacttttctaaagtacaacagagatggagatctgctcttctcttgcgccaaggaccatacccctaccgtttggtttgccgataacggcgagcgcctcggaacttaccgtggccataacggtgctgtttggtgctgcgacgtttctcgggattcgtccagactaataactggaagtgcggatcagactgcaatgttgtgggatgtccaaactggtacccagctgcacacattcacctttgactcccctgctaggtctgttgatttttcggttggcgataaactcgcagtgatcaccactgatccttttatgggactgacatctgctatccatgtcaaacgtatcagcgaagatcccagtgaacaaattagtgagtcggtgcttgtcttaaagggtccccagggaagaatcaacagagctgtgtggggacccctgaataaaacaattataagtgctggtgaagatgctgtaatacgtatctgggatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="13043" stop="9013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12743" g_stop="12460" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11153" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="500" r_length="216" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11152" i_stop="9439" i_length="1714">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.964" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9438" g_stop="9313" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="626" r_length="126" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E484734" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12743" e_stop="12460"/>
          <exon e_start="11368" e_stop="11153"/>
          <exon e_start="9438" e_stop="9313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTCGTCTCTCTCCATCTTTCCTCAGCGGCGAACTTACTCCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAACGTAAGTTTCTGGAACTCTAAGGTTGATCTTCTGTTGTGTTGTCTTGTTTAATTGTTGTTTTTTAACAATTAATTGTTGGGTTGTATTTCTGTTTGTGAAGTAAATATTGCCTTTGTGTACTCTTTCCTTTTAAATTGCGAACAATGAATTGGATTATTGTGAAAGCATCAAATAAGTTCCTTTTATGAGCTTTCAAGTATCTTGTGACAAGCTTCATGTCTCCAGTGTAGCTATTCTTAAGCCCACTGTGTTTCCTTTTCAGAGATGTGAATATTGGACTCTTTATGACCTCAAGTCAGAGCTATACAGATGCATTTTATTTGATTATGATCATATTAGCACATAGTTGGTTTTTAAATGACTTGGATATATCGTGAATTAATTTCTCAAGCTACCAATAAAGTAGCTATGATGGTTTTGCTGTATTCTTAATTAGTTATATTATGATTTGCTATGATTGACAATTTGACATCATTTATCAGATGTTTGTCTGTTCTGTCTTTGTGCTGATATTTTAGTTGTTGAGGCCGTTCCTGGTATGTCTGTGGTGGTTAGTATCATTGAAGAAACCTGTCATTTAAATATCAGCATATGAATAATTGTCTAAATATGTGGAGTGAAGGGACTGTTTCTTTGCATTCCGACTTACCAACTCAGGCCACCCAATTGTATATATGTCTGCACTGGCCCATGTTTTCAAACTGATCAGAATGGATCCCTCCTGGTACTGATCCTCCATCGGTAATAACAATACCCAACTTCCATGCTGGCACCTATGCTATCCACCAACACTTGCCAAAACCAACATTCATGCAGAAACCCAACATATAATTTACTCTCTATGATAAGTACTACAACCAGAATAGTGGAGCAAAACCATGTCCTGTCACTAGGAGTGTTCATGTTTATCAAGTTCGGAACTCCTCTATCACCGGCCACTTAGCATGATGCACTTGGGTATGTAAAGTGAATTTGTTTATGCATGTTGTAAGTTAACAGGCGACAGCTTACTCCCTAACTTCACCACAAAGGAGCTTAAAGGAACCAGTCCTGTTACAATCACATGTCCTTTAACTATAGAGTTACTAGTGCTACTTCTGAGTTAATTGATAATTCACTTTGATATGGAGCTTGGTTATGGGGTCTGGCGGCGAAGCAGATGATTTCTATCCCCCCCCCCCCCCCACTCTTTTTAAGTTCAGTTACCAAAGAAAAAATTGTTGTAGTCATATTATACTTCCCCTTTTGTTTCCTTTAAAGTCACATATCGTTAATAATTATCTTATTACTTTATCCATTATCCTTAATTCTATGTAAACCAGAACTTGAGTATTGGAAAAAAATGTACTGTAGACTATATCAAAAAGCAAAGATGACCACCATTAAAAACATGTAGGATTTATGTGCAGAAAATGGAAGGGTCTTGCTTTCTGTTCAATTATACAAGATTGGTAAAGGTATATAGCTTTAGGGAATATTTGTTGTCAAGAGTTAAGCCTAATATGTTTCCAGAGTTGTCACATCTAACACATTGAATATGCTTTGGAATTTGAGACGAAGGTATATGCCTTGTATAGTTTGTTATTGCTTCTCTGGTGGTTGCTGTCTTATACTAATTTCAAACGAGCCTATCTTCCATTATTTTGGGCACTTTCTGACTCTCATCTCATGATCTTGACATTCACTGTATCTAATAATAATCTTCTTATTTTAGAAATGAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTG</genome_strand>
        <mrna_strand>GTCTTTTTCTCTCTCCATCTTTTCTCAGCGGCGAACTTACTCCGGCGACGAACAACAATCTCACTGAGGGAATCACTCCGGCGACCGGCTACGAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCCAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGAACTTACCGTGGCCATAACGGTGCTGTTTGGTGCTGCGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCGTCCAGACTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTACCCAGCTGCACACATTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCGGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATGTCAAACGTATCAGCGAAGATCCCAGTGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTAGTGAGTCGGTGCTTGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451015" ref_strand="+" ref_description="SGN-E451015 [cSTS-11-A8]">
      <seq>cgacgaacaacaatctcactgagggaatcactccggcgaccggctacgaacaacgatgaggccaatattgatgaagggccatgaaaggccgttaacttttctaaagtacaacagagatggagatctgctcttctcttgcgccaaggaccatacccctaccgtttggtttgccgataacggcgagcgcctcggaacttaccgtggccataacggtgctgtttggtgctgcgacgtttctcgggattcgtccagactaataactggaagtgcggatcagactgcaatgttgtgggatgtccaaactggtacccagctgcacacattcacctttgactcccctgctaggtctgttgatttttcggttggcgataaactcgcagtgatcaccactgatccttttatgggactgacatctgctatccatgtcaaacgtatcagcgaagatcccagtgaacaaattagtgagtcggtgcttgtcttaaagggtccccagggaagaatcaacagagctgtgtggggacccctgaataaaacaattataagtgctggtgaagatgctgtaatacgtatctggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="12998" stop="9018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12698" g_stop="12460" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11153" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="455" r_length="216" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11152" i_stop="9439" i_length="1714">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.964" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9438" g_stop="9318" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="576" r_length="121" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E451015" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12698" e_stop="12460"/>
          <exon e_start="11368" e_stop="11153"/>
          <exon e_start="9438" e_stop="9318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAACGTAAGTTTCTGGAACTCTAAGGTTGATCTTCTGTTGTGTTGTCTTGTTTAATTGTTGTTTTTTAACAATTAATTGTTGGGTTGTATTTCTGTTTGTGAAGTAAATATTGCCTTTGTGTACTCTTTCCTTTTAAATTGCGAACAATGAATTGGATTATTGTGAAAGCATCAAATAAGTTCCTTTTATGAGCTTTCAAGTATCTTGTGACAAGCTTCATGTCTCCAGTGTAGCTATTCTTAAGCCCACTGTGTTTCCTTTTCAGAGATGTGAATATTGGACTCTTTATGACCTCAAGTCAGAGCTATACAGATGCATTTTATTTGATTATGATCATATTAGCACATAGTTGGTTTTTAAATGACTTGGATATATCGTGAATTAATTTCTCAAGCTACCAATAAAGTAGCTATGATGGTTTTGCTGTATTCTTAATTAGTTATATTATGATTTGCTATGATTGACAATTTGACATCATTTATCAGATGTTTGTCTGTTCTGTCTTTGTGCTGATATTTTAGTTGTTGAGGCCGTTCCTGGTATGTCTGTGGTGGTTAGTATCATTGAAGAAACCTGTCATTTAAATATCAGCATATGAATAATTGTCTAAATATGTGGAGTGAAGGGACTGTTTCTTTGCATTCCGACTTACCAACTCAGGCCACCCAATTGTATATATGTCTGCACTGGCCCATGTTTTCAAACTGATCAGAATGGATCCCTCCTGGTACTGATCCTCCATCGGTAATAACAATACCCAACTTCCATGCTGGCACCTATGCTATCCACCAACACTTGCCAAAACCAACATTCATGCAGAAACCCAACATATAATTTACTCTCTATGATAAGTACTACAACCAGAATAGTGGAGCAAAACCATGTCCTGTCACTAGGAGTGTTCATGTTTATCAAGTTCGGAACTCCTCTATCACCGGCCACTTAGCATGATGCACTTGGGTATGTAAAGTGAATTTGTTTATGCATGTTGTAAGTTAACAGGCGACAGCTTACTCCCTAACTTCACCACAAAGGAGCTTAAAGGAACCAGTCCTGTTACAATCACATGTCCTTTAACTATAGAGTTACTAGTGCTACTTCTGAGTTAATTGATAATTCACTTTGATATGGAGCTTGGTTATGGGGTCTGGCGGCGAAGCAGATGATTTCTATCCCCCCCCCCCCCCCACTCTTTTTAAGTTCAGTTACCAAAGAAAAAATTGTTGTAGTCATATTATACTTCCCCTTTTGTTTCCTTTAAAGTCACATATCGTTAATAATTATCTTATTACTTTATCCATTATCCTTAATTCTATGTAAACCAGAACTTGAGTATTGGAAAAAAATGTACTGTAGACTATATCAAAAAGCAAAGATGACCACCATTAAAAACATGTAGGATTTATGTGCAGAAAATGGAAGGGTCTTGCTTTCTGTTCAATTATACAAGATTGGTAAAGGTATATAGCTTTAGGGAATATTTGTTGTCAAGAGTTAAGCCTAATATGTTTCCAGAGTTGTCACATCTAACACATTGAATATGCTTTGGAATTTGAGACGAAGGTATATGCCTTGTATAGTTTGTTATTGCTTCTCTGGTGGTTGCTGTCTTATACTAATTTCAAACGAGCCTATCTTCCATTATTTTGGGCACTTTCTGACTCTCATCTCATGATCTTGACATTCACTGTATCTAATAATAATCTTCTTATTTTAGAAATGAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGA</genome_strand>
        <mrna_strand>CGACGAACAACAATCTCACTGAGGGAATCACTCCGGCGACCGGCTACGAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCCAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGAACTTACCGTGGCCATAACGGTGCTGTTTGGTGCTGCGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCGTCCAGACTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTACCCAGCTGCACACATTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCGGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATGTCAAACGTATCAGCGAAGATCCCAGTGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTAGTGAGTCGGTGCTTGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448696" ref_strand="+" ref_description="SGN-E448696 [cSTS-3-P12]">
      <seq>cttctctctccatcttttctcagcggcgaacttactccggcgacgaacaacaatctcactgagggaatcactccggcgaccggctacgaacaactatgaggccaatattgatgaagggccatgaaaggccgttaacttttctaaagtacaacagagatggagatctgctcttctcttgcgccaaggaccatacccctaccgtttggtttgccgataacggcgagcgcctcggaacttaccgtggccataacggtgccgtttggtgctgcgacgtttctcgggattcgtccaggctaataactggaagtgcggatcagactgcaatgttgtgggatgtccaaactggtacccagctgcacacattcacctttgactcccctgctaggtctgttgatttttcggttggcgataaactcgcagtgatcaccactgatccttttatgggactgacatctgctatccatgtcaaacgtatcagcgaagatcccagtgaacaaattagtgagtcggtgctcgtcttaaagggtccccagggaagaatcaacagagctgtgtggggacccctgaataaaacaattataagtgctggtgaagatgctgtaatacgtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="13038" stop="9023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12738" g_stop="12460" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11153" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="495" r_length="216" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11152" i_stop="9439" i_length="1714">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9438" g_stop="9323" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="611" r_length="116" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E448696" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12738" e_stop="12460"/>
          <exon e_start="11368" e_stop="11153"/>
          <exon e_start="9438" e_stop="9323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCTCTCTCCATCTTTCCTCAGCGGCGAACTTACTCCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAACGTAAGTTTCTGGAACTCTAAGGTTGATCTTCTGTTGTGTTGTCTTGTTTAATTGTTGTTTTTTAACAATTAATTGTTGGGTTGTATTTCTGTTTGTGAAGTAAATATTGCCTTTGTGTACTCTTTCCTTTTAAATTGCGAACAATGAATTGGATTATTGTGAAAGCATCAAATAAGTTCCTTTTATGAGCTTTCAAGTATCTTGTGACAAGCTTCATGTCTCCAGTGTAGCTATTCTTAAGCCCACTGTGTTTCCTTTTCAGAGATGTGAATATTGGACTCTTTATGACCTCAAGTCAGAGCTATACAGATGCATTTTATTTGATTATGATCATATTAGCACATAGTTGGTTTTTAAATGACTTGGATATATCGTGAATTAATTTCTCAAGCTACCAATAAAGTAGCTATGATGGTTTTGCTGTATTCTTAATTAGTTATATTATGATTTGCTATGATTGACAATTTGACATCATTTATCAGATGTTTGTCTGTTCTGTCTTTGTGCTGATATTTTAGTTGTTGAGGCCGTTCCTGGTATGTCTGTGGTGGTTAGTATCATTGAAGAAACCTGTCATTTAAATATCAGCATATGAATAATTGTCTAAATATGTGGAGTGAAGGGACTGTTTCTTTGCATTCCGACTTACCAACTCAGGCCACCCAATTGTATATATGTCTGCACTGGCCCATGTTTTCAAACTGATCAGAATGGATCCCTCCTGGTACTGATCCTCCATCGGTAATAACAATACCCAACTTCCATGCTGGCACCTATGCTATCCACCAACACTTGCCAAAACCAACATTCATGCAGAAACCCAACATATAATTTACTCTCTATGATAAGTACTACAACCAGAATAGTGGAGCAAAACCATGTCCTGTCACTAGGAGTGTTCATGTTTATCAAGTTCGGAACTCCTCTATCACCGGCCACTTAGCATGATGCACTTGGGTATGTAAAGTGAATTTGTTTATGCATGTTGTAAGTTAACAGGCGACAGCTTACTCCCTAACTTCACCACAAAGGAGCTTAAAGGAACCAGTCCTGTTACAATCACATGTCCTTTAACTATAGAGTTACTAGTGCTACTTCTGAGTTAATTGATAATTCACTTTGATATGGAGCTTGGTTATGGGGTCTGGCGGCGAAGCAGATGATTTCTATCCCCCCCCCCCCCCCACTCTTTTTAAGTTCAGTTACCAAAGAAAAAATTGTTGTAGTCATATTATACTTCCCCTTTTGTTTCCTTTAAAGTCACATATCGTTAATAATTATCTTATTACTTTATCCATTATCCTTAATTCTATGTAAACCAGAACTTGAGTATTGGAAAAAAATGTACTGTAGACTATATCAAAAAGCAAAGATGACCACCATTAAAAACATGTAGGATTTATGTGCAGAAAATGGAAGGGTCTTGCTTTCTGTTCAATTATACAAGATTGGTAAAGGTATATAGCTTTAGGGAATATTTGTTGTCAAGAGTTAAGCCTAATATGTTTCCAGAGTTGTCACATCTAACACATTGAATATGCTTTGGAATTTGAGACGAAGGTATATGCCTTGTATAGTTTGTTATTGCTTCTCTGGTGGTTGCTGTCTTATACTAATTTCAAACGAGCCTATCTTCCATTATTTTGGGCACTTTCTGACTCTCATCTCATGATCTTGACATTCACTGTATCTAATAATAATCTTCTTATTTTAGAAATGAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATC</genome_strand>
        <mrna_strand>CTTCTCTCTCCATCTTTTCTCAGCGGCGAACTTACTCCGGCGACGAACAACAATCTCACTGAGGGAATCACTCCGGCGACCGGCTACGAACAACTATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCCAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGAACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGCGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTACCCAGCTGCACACATTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCGGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATGTCAAACGTATCAGCGAAGATCCCAGTGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559779" ref_strand="+" ref_description="SGN-E559779 [19330]">
      <seq>ctccatcttttctcagcggcgaacttactccggcgtcgaacaacaatctcactgagggaattactccggcgaccggctacgaacaacgatgaggccaatattgatgaagggccatgaaaggccgttaacttttctaaagtacaacagagatggagatctgctcttctcttgcgccaaggaccatacccctaccgtttggtttgccgataacggtgagcgcctcggcacttaccgtggccataacggtgctgtttggtgctgcgacgtttctcgggattcgtccaggctaataactggaagtgcggatcagactgcaatgttgtgggatgtccaaactggtacccagctgcacacattcacctttgactcccctgctaggtctgttgatttttcggttggcgataaactcgcagtgatcaccactgatccttttatgggactgacatctgctatccatgtcaaacgtatcagcaaagatcccagtgaacaaattagtgagtcggtgctcgtcttaaagggtccccagggaagaatcaacagagctgtatggggacccctgaataaaacaattataagtgctggtgaagatgctgtaatacgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="13031" stop="9024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12731" g_stop="12460" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11153" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="488" r_length="216" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11152" i_stop="9439" i_length="1714">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9438" g_stop="9324" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="603" r_length="115" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E559779" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12731" e_stop="12460"/>
          <exon e_start="11368" e_stop="11153"/>
          <exon e_start="9438" e_stop="9324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCATCTTTCCTCAGCGGCGAACTTACTCCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAACGTAAGTTTCTGGAACTCTAAGGTTGATCTTCTGTTGTGTTGTCTTGTTTAATTGTTGTTTTTTAACAATTAATTGTTGGGTTGTATTTCTGTTTGTGAAGTAAATATTGCCTTTGTGTACTCTTTCCTTTTAAATTGCGAACAATGAATTGGATTATTGTGAAAGCATCAAATAAGTTCCTTTTATGAGCTTTCAAGTATCTTGTGACAAGCTTCATGTCTCCAGTGTAGCTATTCTTAAGCCCACTGTGTTTCCTTTTCAGAGATGTGAATATTGGACTCTTTATGACCTCAAGTCAGAGCTATACAGATGCATTTTATTTGATTATGATCATATTAGCACATAGTTGGTTTTTAAATGACTTGGATATATCGTGAATTAATTTCTCAAGCTACCAATAAAGTAGCTATGATGGTTTTGCTGTATTCTTAATTAGTTATATTATGATTTGCTATGATTGACAATTTGACATCATTTATCAGATGTTTGTCTGTTCTGTCTTTGTGCTGATATTTTAGTTGTTGAGGCCGTTCCTGGTATGTCTGTGGTGGTTAGTATCATTGAAGAAACCTGTCATTTAAATATCAGCATATGAATAATTGTCTAAATATGTGGAGTGAAGGGACTGTTTCTTTGCATTCCGACTTACCAACTCAGGCCACCCAATTGTATATATGTCTGCACTGGCCCATGTTTTCAAACTGATCAGAATGGATCCCTCCTGGTACTGATCCTCCATCGGTAATAACAATACCCAACTTCCATGCTGGCACCTATGCTATCCACCAACACTTGCCAAAACCAACATTCATGCAGAAACCCAACATATAATTTACTCTCTATGATAAGTACTACAACCAGAATAGTGGAGCAAAACCATGTCCTGTCACTAGGAGTGTTCATGTTTATCAAGTTCGGAACTCCTCTATCACCGGCCACTTAGCATGATGCACTTGGGTATGTAAAGTGAATTTGTTTATGCATGTTGTAAGTTAACAGGCGACAGCTTACTCCCTAACTTCACCACAAAGGAGCTTAAAGGAACCAGTCCTGTTACAATCACATGTCCTTTAACTATAGAGTTACTAGTGCTACTTCTGAGTTAATTGATAATTCACTTTGATATGGAGCTTGGTTATGGGGTCTGGCGGCGAAGCAGATGATTTCTATCCCCCCCCCCCCCCCACTCTTTTTAAGTTCAGTTACCAAAGAAAAAATTGTTGTAGTCATATTATACTTCCCCTTTTGTTTCCTTTAAAGTCACATATCGTTAATAATTATCTTATTACTTTATCCATTATCCTTAATTCTATGTAAACCAGAACTTGAGTATTGGAAAAAAATGTACTGTAGACTATATCAAAAAGCAAAGATGACCACCATTAAAAACATGTAGGATTTATGTGCAGAAAATGGAAGGGTCTTGCTTTCTGTTCAATTATACAAGATTGGTAAAGGTATATAGCTTTAGGGAATATTTGTTGTCAAGAGTTAAGCCTAATATGTTTCCAGAGTTGTCACATCTAACACATTGAATATGCTTTGGAATTTGAGACGAAGGTATATGCCTTGTATAGTTTGTTATTGCTTCTCTGGTGGTTGCTGTCTTATACTAATTTCAAACGAGCCTATCTTCCATTATTTTGGGCACTTTCTGACTCTCATCTCATGATCTTGACATTCACTGTATCTAATAATAATCTTCTTATTTTAGAAATGAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTAT</genome_strand>
        <mrna_strand>CTCCATCTTTTCTCAGCGGCGAACTTACTCCGGCGTCGAACAACAATCTCACTGAGGGAATTACTCCGGCGACCGGCTACGAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCCAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGTGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCTGTTTGGTGCTGCGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTACCCAGCTGCACACATTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCGGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATGTCAAACGTATCAGCAAAGATCCCAGTGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTATGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440995" ref_strand="+" ref_description="SGN-E440995 [cSTA-28-F18]">
      <seq>ctccatcttttctcagcggcgaacttactccggcgacgaacaacaatctcactgagggaatcactccggcgaccggctacgaacaacgatgaggccaatattgatgaagggccatgaaaggccgttaacttttctaaagtacaacagagatggagatctgctcttctcttgcgccaaggaccatacccctaccgtttggtttgccgataacggcgagcgcctcggaacttaccgtggccataacggtgctgtttggtgctgcgacgtttctcgggattcgtccagactaataactggaagtgcggatcagactgcaatgttgtgggatgtccaaactggtacccagctgcacacattcacctttgactcccctgctaggtctgttgatttttcggttggcgataaactcgcagtgatcaccactgatccttttatgggactgacatctgctatccatgtcaaacgtatcagcgaagatcccagtgaacaaattantgagtgggtgcttgtcttaaagggtccccagggaagaatcaacagagctgtgtggggacccctgaataaaacaattataagtgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="13031" stop="9046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12731" g_stop="12460" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11153" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="488" r_length="216" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11152" i_stop="9439" i_length="1714">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.964" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9438" g_stop="9346" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="581" r_length="93" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E440995" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12731" e_stop="12460"/>
          <exon e_start="11368" e_stop="11153"/>
          <exon e_start="9438" e_stop="9346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCATCTTTCCTCAGCGGCGAACTTACTCCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAACGTAAGTTTCTGGAACTCTAAGGTTGATCTTCTGTTGTGTTGTCTTGTTTAATTGTTGTTTTTTAACAATTAATTGTTGGGTTGTATTTCTGTTTGTGAAGTAAATATTGCCTTTGTGTACTCTTTCCTTTTAAATTGCGAACAATGAATTGGATTATTGTGAAAGCATCAAATAAGTTCCTTTTATGAGCTTTCAAGTATCTTGTGACAAGCTTCATGTCTCCAGTGTAGCTATTCTTAAGCCCACTGTGTTTCCTTTTCAGAGATGTGAATATTGGACTCTTTATGACCTCAAGTCAGAGCTATACAGATGCATTTTATTTGATTATGATCATATTAGCACATAGTTGGTTTTTAAATGACTTGGATATATCGTGAATTAATTTCTCAAGCTACCAATAAAGTAGCTATGATGGTTTTGCTGTATTCTTAATTAGTTATATTATGATTTGCTATGATTGACAATTTGACATCATTTATCAGATGTTTGTCTGTTCTGTCTTTGTGCTGATATTTTAGTTGTTGAGGCCGTTCCTGGTATGTCTGTGGTGGTTAGTATCATTGAAGAAACCTGTCATTTAAATATCAGCATATGAATAATTGTCTAAATATGTGGAGTGAAGGGACTGTTTCTTTGCATTCCGACTTACCAACTCAGGCCACCCAATTGTATATATGTCTGCACTGGCCCATGTTTTCAAACTGATCAGAATGGATCCCTCCTGGTACTGATCCTCCATCGGTAATAACAATACCCAACTTCCATGCTGGCACCTATGCTATCCACCAACACTTGCCAAAACCAACATTCATGCAGAAACCCAACATATAATTTACTCTCTATGATAAGTACTACAACCAGAATAGTGGAGCAAAACCATGTCCTGTCACTAGGAGTGTTCATGTTTATCAAGTTCGGAACTCCTCTATCACCGGCCACTTAGCATGATGCACTTGGGTATGTAAAGTGAATTTGTTTATGCATGTTGTAAGTTAACAGGCGACAGCTTACTCCCTAACTTCACCACAAAGGAGCTTAAAGGAACCAGTCCTGTTACAATCACATGTCCTTTAACTATAGAGTTACTAGTGCTACTTCTGAGTTAATTGATAATTCACTTTGATATGGAGCTTGGTTATGGGGTCTGGCGGCGAAGCAGATGATTTCTATCCCCCCCCCCCCCCCACTCTTTTTAAGTTCAGTTACCAAAGAAAAAATTGTTGTAGTCATATTATACTTCCCCTTTTGTTTCCTTTAAAGTCACATATCGTTAATAATTATCTTATTACTTTATCCATTATCCTTAATTCTATGTAAACCAGAACTTGAGTATTGGAAAAAAATGTACTGTAGACTATATCAAAAAGCAAAGATGACCACCATTAAAAACATGTAGGATTTATGTGCAGAAAATGGAAGGGTCTTGCTTTCTGTTCAATTATACAAGATTGGTAAAGGTATATAGCTTTAGGGAATATTTGTTGTCAAGAGTTAAGCCTAATATGTTTCCAGAGTTGTCACATCTAACACATTGAATATGCTTTGGAATTTGAGACGAAGGTATATGCCTTGTATAGTTTGTTATTGCTTCTCTGGTGGTTGCTGTCTTATACTAATTTCAAACGAGCCTATCTTCCATTATTTTGGGCACTTTCTGACTCTCATCTCATGATCTTGACATTCACTGTATCTAATAATAATCTTCTTATTTTAGAAATGAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTG</genome_strand>
        <mrna_strand>CTCCATCTTTTCTCAGCGGCGAACTTACTCCGGCGACGAACAACAATCTCACTGAGGGAATCACTCCGGCGACCGGCTACGAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCCAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGAACTTACCGTGGCCATAACGGTGCTGTTTGGTGCTGCGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCGTCCAGACTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTACCCAGCTGCACACATTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCGGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATGTCAAACGTATCAGCGAAGATCCCAGTGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTANTGAGTGGGTGCTTGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311712" ref_strand="+" ref_description="SGN-E311712 [cLEZ-9-P6]">
      <seq>cgacgaacaacaatctcactgagagaatcactccggcgaccgactacaaacaacgatgaggccaatattgatgaagggccatgaaaggccgttaacttttctaaagtacaacagagatggagatctgctcttctcttgcgctaaggaccatacccctaccgtttggtttgccgataacggcgagcgcctcggcacttaccgtggccataacggtgccgtttggtgctgtgacgtttctcgggattcgtccaggctaataactggaagtgcggatcagactgcaatgttgtgggatgtccaaactggtgcccagctgcacacgttcacctttgactcccctgctaggtctgttgatttttcagttggcgataaactcgcagtgatcaccactgatccttttatgggactgacatctgctatccatatcaaaaatatcagcaaagatcccagtgaacaaatgagtgagtcggtgctcgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="12998" stop="9114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12698" g_stop="12460" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11153" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="455" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11152" i_stop="9439" i_length="1714">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9438" g_stop="9414" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="480" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E311712" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12698" e_stop="12460"/>
          <exon e_start="11368" e_stop="11153"/>
          <exon e_start="9438" e_stop="9414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAACGTAAGTTTCTGGAACTCTAAGGTTGATCTTCTGTTGTGTTGTCTTGTTTAATTGTTGTTTTTTAACAATTAATTGTTGGGTTGTATTTCTGTTTGTGAAGTAAATATTGCCTTTGTGTACTCTTTCCTTTTAAATTGCGAACAATGAATTGGATTATTGTGAAAGCATCAAATAAGTTCCTTTTATGAGCTTTCAAGTATCTTGTGACAAGCTTCATGTCTCCAGTGTAGCTATTCTTAAGCCCACTGTGTTTCCTTTTCAGAGATGTGAATATTGGACTCTTTATGACCTCAAGTCAGAGCTATACAGATGCATTTTATTTGATTATGATCATATTAGCACATAGTTGGTTTTTAAATGACTTGGATATATCGTGAATTAATTTCTCAAGCTACCAATAAAGTAGCTATGATGGTTTTGCTGTATTCTTAATTAGTTATATTATGATTTGCTATGATTGACAATTTGACATCATTTATCAGATGTTTGTCTGTTCTGTCTTTGTGCTGATATTTTAGTTGTTGAGGCCGTTCCTGGTATGTCTGTGGTGGTTAGTATCATTGAAGAAACCTGTCATTTAAATATCAGCATATGAATAATTGTCTAAATATGTGGAGTGAAGGGACTGTTTCTTTGCATTCCGACTTACCAACTCAGGCCACCCAATTGTATATATGTCTGCACTGGCCCATGTTTTCAAACTGATCAGAATGGATCCCTCCTGGTACTGATCCTCCATCGGTAATAACAATACCCAACTTCCATGCTGGCACCTATGCTATCCACCAACACTTGCCAAAACCAACATTCATGCAGAAACCCAACATATAATTTACTCTCTATGATAAGTACTACAACCAGAATAGTGGAGCAAAACCATGTCCTGTCACTAGGAGTGTTCATGTTTATCAAGTTCGGAACTCCTCTATCACCGGCCACTTAGCATGATGCACTTGGGTATGTAAAGTGAATTTGTTTATGCATGTTGTAAGTTAACAGGCGACAGCTTACTCCCTAACTTCACCACAAAGGAGCTTAAAGGAACCAGTCCTGTTACAATCACATGTCCTTTAACTATAGAGTTACTAGTGCTACTTCTGAGTTAATTGATAATTCACTTTGATATGGAGCTTGGTTATGGGGTCTGGCGGCGAAGCAGATGATTTCTATCCCCCCCCCCCCCCCACTCTTTTTAAGTTCAGTTACCAAAGAAAAAATTGTTGTAGTCATATTATACTTCCCCTTTTGTTTCCTTTAAAGTCACATATCGTTAATAATTATCTTATTACTTTATCCATTATCCTTAATTCTATGTAAACCAGAACTTGAGTATTGGAAAAAAATGTACTGTAGACTATATCAAAAAGCAAAGATGACCACCATTAAAAACATGTAGGATTTATGTGCAGAAAATGGAAGGGTCTTGCTTTCTGTTCAATTATACAAGATTGGTAAAGGTATATAGCTTTAGGGAATATTTGTTGTCAAGAGTTAAGCCTAATATGTTTCCAGAGTTGTCACATCTAACACATTGAATATGCTTTGGAATTTGAGACGAAGGTATATGCCTTGTATAGTTTGTTATTGCTTCTCTGGTGGTTGCTGTCTTATACTAATTTCAAACGAGCCTATCTTCCATTATTTTGGGCACTTTCTGACTCTCATCTCATGATCTTGACATTCACTGTATCTAATAATAATCTTCTTATTTTAGAAATGAGTGAGTCGGTGCTCGTCTT</genome_strand>
        <mrna_strand>CGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGAGTGAGTCGGTGCTCGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207820" ref_strand="+" ref_description="SGN-E207820 [cLEC-32-D22]">
      <seq>gttaacttttttaaagtacaacatagatggagatctgctcttctcttgcgctaaggaccatacccctaccgtttggtttgccgataacggcgagcgcctcggcacttaccgtggccataacggtgccgtttggtgctgcgacgtttctcgggattcatccaggctaataactggcagtgcggatcagactgcaatgttgtgggatgtccaaactggtgcccagctgcacacgttcacctttgactcccctgctaggtctgttgatttttcagttggcgataaactcgcagtgatcaccactgatccttttatgggactgacatctgctatccatatcaaaaaatattagcaaaagattccagtgaacaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="12908" stop="10848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12608" g_stop="12460" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11153" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="367" r_length="218" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11152" i_stop="10891" i_length="262">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="0.791" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10890" g_stop="10886" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="372" r_length="5" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E207820" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12608" e_stop="12460"/>
          <exon e_start="11368" e_stop="11153"/>
          <exon e_start="10890" e_stop="10886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAA-TATCAGC-AAAGATCCCAGTGAACGTAAGTTTCTGGAACTCTAAGGTTGATCTTCTGTTGTGTTGTCTTGTTTAATTGTTGTTTTTTAACAATTAATTGTTGGGTTGTATTTCTGTTTGTGAAGTAAATATTGCCTTTGTGTACTCTTTCCTTTTAAATTGCGAACAATGAATTGGATTATTGTGAAAGCATCAAATAAGTTCCTTTTATGAGCTTTCAAGTATCTTGTGACAAGCTTCATGTCTCCAGTGTAGCTATTCTTAAGCCCACTGTGTTTCCTTTTCAGAGATG</genome_strand>
        <mrna_strand>GTTAACTTTTTTAAAGTACAACATAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGCGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCATCCAGGCTAATAACTGGCAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAAATATTAGCAAAAGATTCCAGTGAAC......................................................................................................................................................................................................................................................................AAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419171" ref_strand="+" ref_description="SGN-E419171 [STM-29-I13]">
      <seq>ctccatcttttctcagcggcgaacttactccggcgacgaacaacaatctcactgagggaatcactccggcgaccggctacgaacaacgatgaggccaatattgatgaagggccatgaaaggccgttaacttttctaaagtacaacagagatggagatctgctcttctcttgcgccaaggaccatacccctaccgtttggtttgccgataacggcgagcgcctcggaacttaccgtggccataacggtgctgtttggtgctgcgacgtttctcgggattcgtccagactaataactggaagtgcggatcagactgcaatgttgtgggatgtccaaactggtacccagctgcacacattcacctttgactcccctgctaggtctgttgatttttcggttggcgataaactcgcagtgatcaccactgatccttttatgggactgacatctgctatccatgtcaaacgtatcagcgaagatcccagtgaacaaattagtgagtcggtgcttgtcttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="13031" stop="10853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12731" g_stop="12460" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11153" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="488" r_length="216" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E419171" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12731" e_stop="12460"/>
          <exon e_start="11368" e_stop="11153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCATCTTTCCTCAGCGGCGAACTTACTCCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAAC</genome_strand>
        <mrna_strand>CTCCATCTTTTCTCAGCGGCGAACTTACTCCGGCGACGAACAACAATCTCACTGAGGGAATCACTCCGGCGACCGGCTACGAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCCAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGAACTTACCGTGGCCATAACGGTGCTGTTTGGTGCTGCGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCGTCCAGACTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTACCCAGCTGCACACATTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCGGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATGTCAAACGTATCAGCGAAGATCCCAGTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E399632" ref_strand="+" ref_description="SGN-E399632 [cSTC-1-G21]">
      <seq>cttttctcaacggtgaacttactccggcgacgaacaacaatctcactgagggaatcactccggcgaccggctacgaacaactatgaggccaatattgatgaagggccatgaaaggccgttaacttttctaaagtacaacagagatggagatctgctcttctcttgcgccaaggaccatacccctaccgtttggtttgccgataacggcgagcgcctcggaacttaccgtggccataacggtgccgtttggtgctgcgacgtttctcgggattcgtccaggctaataactggaagtgcggatcagactgcaatgttgtgggatgtccaaactggtacccagctgcgcacattcacctttgactcccctgctaggtctgttgatttttctgttggcgataaactcgcagtgatcaccactgatccttttatgggactgacatttgctatccatgtcaaacgtatcagcgaagatcccagtgaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="13025" stop="10853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12725" g_stop="12460" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11153" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="482" r_length="216" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E399632" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E399632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12725" e_stop="12460"/>
          <exon e_start="11368" e_stop="11153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCCTCAGCGGCGAACTTACTCCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAAC</genome_strand>
        <mrna_strand>CTTTTCTCAACGGTGAACTTACTCCGGCGACGAACAACAATCTCACTGAGGGAATCACTCCGGCGACCGGCTACGAACAACTATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCCAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGAACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGCGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTACCCAGCTGCGCACATTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCTGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATTTGCTATCCATGTCAAACGTATCAGCGAAGATCCCAGTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409840" ref_strand="+" ref_description="SGN-E409840 [PPI-15-A4]">
      <seq>cttactccggcgacgaacaacaatctcactgagggaatcactccggcgaccggctacgaacaacgatgaggccaatattgatgaagggccatgaaaggccgttaacttttctaaagtacaacagagatggagatctgctcttctcttgcgccaaggaccatacccctaccgtttggtttgccgataacggcgagcgcctcggaacttaccgtggccataacggtgctgtttggtgctgcgacgtttctcgggattcgtccagactaataactggaagtgcggatcagactgcaatgttgtgggatgtccaaactggtacccagctgcacacattcacctttgactcccctgctaggtctgttgatttttcggttggcgataaactcgcagtgatcaccactgatccttttatgggactgacatctgctatccatgtcaaacgtatcagcgaagatcccagtgaacaaattagtgagtcggtgcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="13008" stop="10853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12708" g_stop="12460" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11153" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="465" r_length="216" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E409840" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12708" e_stop="12460"/>
          <exon e_start="11368" e_stop="11153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTCCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAAC</genome_strand>
        <mrna_strand>CTTACTCCGGCGACGAACAACAATCTCACTGAGGGAATCACTCCGGCGACCGGCTACGAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCCAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGAACTTACCGTGGCCATAACGGTGCTGTTTGGTGCTGCGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCGTCCAGACTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTACCCAGCTGCACACATTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCGGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATGTCAAACGTATCAGCGAAGATCCCAGTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278095" ref_strand="+" ref_description="SGN-E278095 [cLER-4-I14]">
      <seq>atctcactgagaggaaatcactccggcgaccgactacaaacaacgatgaggccaatattgatgaagggccatgaaaggccgttaacttttctaaagtacaacagagatggagatctgctcttctcttgcgctaaggaccatacccctaccgtttggtttgccgataacggcgagcgcctcggcacttaccgtggccataacggtgccgtttggtgctgtgacgtttctcgggattcgtccaggctaataactggaagtgcggatcagactgcaatgttgtgggatgtccaaactggtgcccagctgcacacgttcacctttgactcccctgctaggtctgttgatttttcagttggcgataaactcgcagtgatcaccactgatccttttatgggactgacatctgctatccatatcaaaaatatcagcaaagatcccagtgaacaaatgagtgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="12986" stop="10848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12686" g_stop="12460" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11153" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="445" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E278095" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12686" e_stop="12460"/>
          <exon e_start="11368" e_stop="11153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCACTGAGA-G-AATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAAC</genome_strand>
        <mrna_strand>ATCTCACTGAGAGGAAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568276" ref_strand="+" ref_description="SGN-E568276 [12533]">
      <seq>gctccggcgacgaacaacaatctcactgagggaatcactccggcgaccggctacgaacaagctatgaggccaatattgatgaagggccatgaaaggccgttaacttttctaaagtacaacagagcatggagatctgctcttctcttggcgccaaggaccatacccctaccgtttggtttgccgataacggcgagcgcctcggaacttaccgtggccataacggtgccgtttggtgctgcgacgtttctcgggattcgtccaggctaataactggaagtgcggatcagactgcaatgttgtgggatgtccaaactggtacccagctgcacacattcacctttgactcccctgctagtctgttgatttttcggttggcgataaactcgcagtgatcaccactgatccttttatgggactgacatctgctatccatgtcaaacgtatcagcgaagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="13004" stop="10862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12705" g_stop="12460" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11162" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="455" r_length="206" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E568276" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12705" e_stop="12460"/>
          <exon e_start="11368" e_stop="11162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAA-CGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAG-ATGGAGATCTGCTCTTCTCTT-GCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATC</genome_strand>
        <mrna_strand>GCTCCGGCGACGAACAACAATCTCACTGAGGGAATCACTCCGGCGACCGGCTACGAACAAGCTATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGCATGGAGATCTGCTCTTCTCTTGGCGCCAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGAACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGCGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTACCCAGCTGCACACATTCACCTTTGACTCCCCTGCTA-GTCTGTTGATTTTTCGGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATGTCAAACGTATCAGCGAAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472456" ref_strand="+" ref_description="SGN-E472456 [cSTB-28-D20]">
      <seq>cttttctcagcggcgaacttactccggcgacgaacaacaatctcactgagggaatcactccggcgaccggctacgaacaactatgaggccaatattgatgaagggccatgaaaggccgttaacttttctaaagtacaacagagatggagatctgctcttctcttgcgccaaggaccatacccctaccgtttggtttgccgataacggcgagcgcctcggaacttaccgtggccataacggtgccgtttggtgctgcgacgtttctcgggattcgtccaggctaataactggaagtgcggatcagactgcaatgttgtgggatgtccaaactggtacccagctgcacacattcacctttgactcccctgctaggtctgttgatttttcggttggcgataaactcgcagtgatcaccactgatccttttatgggactgacatctgctatccatgtcaaacgtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="13025" stop="10872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12725" g_stop="12460" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11172" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="463" r_length="197" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E472456" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12725" e_stop="12460"/>
          <exon e_start="11368" e_stop="11172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCCTCAGCGGCGAACTTACTCCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATC</genome_strand>
        <mrna_strand>CTTTTCTCAGCGGCGAACTTACTCCGGCGACGAACAACAATCTCACTGAGGGAATCACTCCGGCGACCGGCTACGAACAACTATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCCAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGAACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGCGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTACCCAGCTGCACACATTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCGGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATGTCAAACGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437293" ref_strand="+" ref_description="SGN-E437293 [cSTA-3-E22]">
      <seq>tttctcgggattcgtccagactaataactggaagtgcggatcagaatgcaatgttgtgggatgtccaaactggtaccccagctgcacaccattcacctttgactcccctgctaggtctgttgatttttcggttggcgataaactcgcagtgatcaccactgatccttttatgggactgacatctgctatccatgtcaaacgtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="11668" stop="10872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11368" g_stop="11172" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="205" r_length="199" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E437293" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>197</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11368" e_stop="11172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGT-GCCCAGCTGCACACG-TTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATC</genome_strand>
        <mrna_strand>GGGATTCGTCCAGACTAATAACTGGAAGTGCGGATCAGAATGCAATGTTGTGGGATGTCCAAACTGGTACCCCAGCTGCACACCATTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCGGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATGTCAAACGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446034" ref_strand="+" ref_description="SGN-E446034 [cSTA-19-B8]">
      <seq>ccgtcgacgaacaacaatctcactgagggaatcactccggcgaccggctacgaacaacgatgaggccaatattgatgaagggccatgaaaggccgttaacttttctaaagtacaacagagatggagatctgctcttctcttgcgccaaggaccatacccctaccgtttggtttgccgataacggcgagcgcctcggaacttaccgtggccataacggtgccgtttggtgctgcgacgtttctcgggattcgtccaggctaataactggaagtgcggatcagactgcaatgttgtgggatgtccaaactggtacccagctgcacacattcacctttgactcccctgctaggtctgttgatttttcggttggcgataaactcgcaatgatcaccactgatccttttatgggactgacatctgctatccatgtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="13002" stop="10879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12702" g_stop="12460" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11179" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="433" r_length="190" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E446034" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12702" e_stop="12460"/>
          <exon e_start="11368" e_stop="11179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAA</genome_strand>
        <mrna_strand>CCGTCGACGAACAACAATCTCACTGAGGGAATCACTCCGGCGACCGGCTACGAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCCAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGAACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGCGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTACCCAGCTGCACACATTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCGGTTGGCGATAAACTCGCAATGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443588" ref_strand="+" ref_description="SGN-E443588 [cSTA-39-A11]">
      <seq>ctccatcttttctcagcggcgaacttactccggcgacgaacaacaatctcactgagggaatcactccggcgaccggctacgaacaacgatgaggccaatattgatgaagggccatgaaaggccgttaacttttctaaagtacaacagagatggagatctgctcttctcttgcgccaaggaccatacccctaccgtttggtttgccgataacggcgagcgcctcggaacttaccgtggccataacggtgctgtttggtgctgcgacgtttctcgggattcgtccagactaataactggaagtgcggatcagactgcaatgttgtgggatgtccaaactggtacccagctgcacacattcacctttgactcccctgctaggtctgttgatttttcggttggcgataaactcgcagtgatcaccactgatccttttatgggactgacatctgctatccatgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="13031" stop="10880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12731" g_stop="12460" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11180" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="461" r_length="189" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E443588" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12731" e_stop="12460"/>
          <exon e_start="11368" e_stop="11180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCATCTTTCCTCAGCGGCGAACTTACTCCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCA</genome_strand>
        <mrna_strand>CTCCATCTTTTCTCAGCGGCGAACTTACTCCGGCGACGAACAACAATCTCACTGAGGGAATCACTCCGGCGACCGGCTACGAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCCAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGAACTTACCGTGGCCATAACGGTGCTGTTTGGTGCTGCGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCGTCCAGACTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTACCCAGCTGCACACATTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCGGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568895" ref_strand="+" ref_description="SGN-E568895 [13250]">
      <seq>ccggctgcagcttcttctctctccatcttttctcagcggcgaacttacaccggncgacgaacaacaatctcactgagggaatcactccggcgaccggctacgaacaacgatgaggccaatattgatgaagggccatgaaaggccgttaacttttctaaagtacaacagagatggagatctgctcttctcttgcgccaaggaccatacccctaccgtttggtttgccgataacggcgagcgcctcgggaacttaccgtggccataacggtgccgtttggtgctgcgacgtttctcgggattcgtccagactaataactggaagtgcggatcagactgcaatgttgtgggatgtccaaactggtacccagctgcacacattcacctttgactcccctgctagtcctgtgatttttcggttggcgataaactcgcagtgatcaccaactgatccttttatgggactgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="13052" stop="10895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12752" g_stop="12460" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11195" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="468" r_length="174" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E568895" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12752" e_stop="12460"/>
          <exon e_start="11368" e_stop="11195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCAACCGTCTTCGTCTCTCTCCATCTTTCCTCAGCGGCGAACTTACTCCGG-CGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTC-GGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACC-ACTGATCCTTTTATGGGACTGACAT</genome_strand>
        <mrna_strand>CCGGCTGCAG-CTTCTTCTCTCTCCATCTTTTCTCAGCGGCGAACTTACACCGGNCGACGAACAACAATCTCACTGAGGGAATCACTCCGGCGACCGGCTACGAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCCAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGGAACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGCGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCGTCCAGACTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTACCCAGCTGCACACATTCACCTTTGACTCCCCTGCTAGTCCTG-TGATTTTTCGGTTGGCGATAAACTCGCAGTGATCACCAACTGATCCTTTTATGGGACTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477002" ref_strand="+" ref_description="SGN-E477002 [cSTB-46-N6]">
      <seq>cttactccggcgacgaacaacaatctcactgagggaatcactccggcgaccggctacgaacaacgatgaggccaatattgatgaagggccatgaaaggccgttaacttttctaaagtacaacagagatggagatctgctcttctcttgcgccaaggaccatacccctaccgtttggtttgccgataacggcgagcgcctcggaacttaccgtggccataacggtgctgtttggtgctgcgacgtttctcgggattcgtccagactaataactggaagtgcggatcagactgcaatgttgtgggatgtccaaactggtacccagctgcacacattcacctttgactcccctgctaggtctgttgatttttcggttggcgataaactcgcagtgatcaccactgatccttttatgggactgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="13008" stop="10895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12708" g_stop="12460" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11195" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="423" r_length="174" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E477002" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12708" e_stop="12460"/>
          <exon e_start="11368" e_stop="11195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTCCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACAT</genome_strand>
        <mrna_strand>CTTACTCCGGCGACGAACAACAATCTCACTGAGGGAATCACTCCGGCGACCGGCTACGAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCCAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGAACTTACCGTGGCCATAACGGTGCTGTTTGGTGCTGCGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCGTCCAGACTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTACCCAGCTGCACACATTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCGGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280193" ref_strand="-" ref_description="SGN-E280193 [cLEL-7-B21](-)">
      <seq>gcacgagcggcgacgaacaacaatctcactgagagaatcactccggcgaccgactacaaacaacgatgacgccaatattgatgaagggccatgaaaggccgttaacttttctaaagtacaacagagatggagatctgctcttctcttgcgctaaggaccatacccctaccgtttggtttgccgataacggcgagcgcctcggcacttaccgtggccataacggtgccgtttggtgctgtgacgtttctcgggattcgtccaggctaataactggaagtgcggatcagactgcaatgttggggggatgtccaaactggtgcccagctgcacacgttcacctttgactccctgcttggtctgntggatttttcagttggcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="13001" stop="10938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12707" g_stop="12460" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11238" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="381" r_length="132" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E280193" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280193" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12707" e_stop="12460"/>
          <exon e_start="11368" e_stop="11238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAC-TCCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTG-GGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTT-GATTTTTCAGTTGGCGAT</genome_strand>
        <mrna_strand>GCACGAGCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGACGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGGGGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACT-CCCTGCTTGGTCTGNTGGATTTTTCAGTTGGCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480363" ref_strand="+" ref_description="SGN-E480363 [cSTD-13-N7]">
      <seq>gaacttactccggcgacgaacaacaatctcactgagggaatcactccggcgaccggctacgaacaactatgaggccaatattgatgaagggccatgaaaggccgttaacttttctaaagtacaacagagatggagatctgctcttctcttgcgccaaggaccatacccctaccgaatggtttgccgattacggataacgcctcggaacttaccgtggccataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="13011" stop="12189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12711" g_stop="12489" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E480363" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>223</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12711" e_stop="12489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTTACTCCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAA</genome_strand>
        <mrna_strand>GAACTTACTCCGGCGACGAACAACAATCTCACTGAGGGAATCACTCCGGCGACCGGCTACGAACAACTATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCCAAGGACCATACCCCTACCGAATGGTTTGCCGATTACGGATAACGCCTCGGAACTTACCGTGGCCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433880" ref_strand="-" ref_description="SGN-E433880 [STM-59-K7]">
      <seq>gtaatataaagaaattttcagtaattgctgatcttaaaacacatgaaaagcattgtggaaaggataagtggctttgttcctgtggaacaacattttttaggaaagacaagctttttggacacatttccctttttcaaggtcatactcctgcagtttttccggatgaaactaaaggatttgttgggacatttgaccggggccaaaccagtgaagtccccatgaaagctcgacaagagaactataaggtaaatgcttcacatggcaatgagtttcaaaatcccggggttgtaaaagagtgtccatacaatccaagcagttatttttcccctttgaactttgatacgagcaattttaatggatttcaagagttccctcgacccccatttgatgagtcagatagctcattttcatttttgctatttggatcatgtgaataccctcctcacaaggctgccaaatttatgagttttagtgaaatggaataacatcaaccagtattcaatttgtctttggttcattgtagctatctattttatcatgtcattttttttttcagaataactgtgttttccttgagttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="75929" stop="25124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75629" g_stop="75049" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75048" i_stop="72022" i_length="3027">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.905" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72021" g_stop="72011" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="590" r_length="11" r_score="0.636"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72010" i_stop="71786" i_length="225">
            <donor d_prob="0.699" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71785" g_stop="71754" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="622" r_length="32" r_score="0.688"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E433880" ref_strand="-">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433880" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75629" e_stop="75049"/>
          <exon e_start="72021" e_stop="72011"/>
          <exon e_start="71785" e_stop="71754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACATTAAGAAATTTTCAGTAATTGCTGATCTTAAAACACATGAAAAGCATTGTGGAAAGGATAAGTGGCTTTGTTCCTGTGGAACAACATTTTCGAGGAAAGACAAGCTTTTTGGACACATTTCCCTTTTTCAAGGTCATACTCCTGCAGTTTCTCCGGATGAAACTAAAGGATCTGCTGGGACATCTGACCGGGGCCAAACCGGTGAAGTCACCATGAAAGCTCGACAAGAAAACTATAAGGTAAATGCTTCACTTGGCAATGAGTTTCAAAATCCCGGGGTTGTAAAAGAGTGTCCATACAATCCAAGCAGTTATTTCTCACCTTTGAACTTCGATACTAGCAATCTTAATGGATTTCAAGAGTTCCCTCGACCACCATTTGACGAGTCAGATAGCTCATTCTCATTTCTGCTGTCTGGATCATGTGAATACCCTCCTCACAAGGCTGCAAAATTTATGAGTTCTAGTGAAATGGAATAACATCAACCAGTATTCAATTTGTCTTTGGTTCATTGTAGCTATTTATTCTATTATGTCATTATTATATTTTCAGAGTAACTGTGTTTTCCTTAAGTTATATAGTATAATTGTTGCTATGAGTTTGTCAATTGCAGCAAGTGACCAGGAAAATGCATCAACTGTCTCAAGCAGTTTTACAAAAACCTCATTCAACCTTTCCAAGAATCTCGATTAGATATAACGTTCACTAAAAGATCCATCTATATTAATCACCTGGCCAGTTACGATTCATCTGTGATGCATGTTGGTGACAAGTTCAAACCAAAATTTTATATTGTTCCAGAAGATTACAATGCTGTCATTTCAGAACATGAAAGCTTCCACATGATTACTTTTTTTTGCACCCCTATCTCTTATAAGAGCCTTCTTGCCCTTGATTACAAAGCACCACAATCTAAAACTGTCAAAAGAAATTGAACATGATTGTTGCAATTGAAAAGAAAAGGTTGTACACAGCTATAATACCTAACTGATTCAACTGGCTGTACTGATGTGGCACCTAAAATGAGAATTATGGAGCAATATGAGCTTCAACCCTTTTGCAGCTTCTCCTGACATTGATGGCTTCTTTGGAGGGCCGTGGTAATATGTTTCCCTAAGAACAAAGTCATCCTCACATGACCAAGTCCTTCCCCTGGGAGAGCTGTCCTTCCAAAGAAATCTCTCAGAGAATGGATTCACTAAGCTCTCGCGGAACTCTTCTGCTGTCTCACAGTTCAAACCCTGCAAGTGTAAATAAATGTTAGAATGAAAATTCACCATGTACAGCTTGGATGGTGGTTTTTTTATGGTCTTACTTCTGCCATGGCTTTGATTTTCATGGTAAGATCGTTGCTAAGAAGGACGAGTTGTCCGTTTCTGTTGGTTCTTTTGAAGAAGAGGGCATATTCAAGGATATGATCTTCTGCTGTGGGTGAGGCAAAATCCATTAGACCACTATGTGGAGAAAATTGATGTGAGCCAACAGGAAACATGCCATTCTCCTCACTGAACAAAGACAATGGAGCTGTAGCAGGAGGGGTTGGTGCCACTGCTCTTGTTTCCTCTGCACAACTCTGTACATGAATCCATGCCTTTGCATTTATCATGCAGTCTTCTATCCATTCTAATGCTGCAGATACCTCAGTTGTCCTTCTAAATAGACTAGCACGCCTCTTCATGCAATCCAATTCTCTTATGACTGTCAACAAGGATCAGAGAAAACAGGCATTCTATTTAACAAAAACAATTGGCACTTGGAAACGACAAAATTTTCAGGGTTAAGTTCATTACCAGTTCTAGGAATTATCATATAAGTTCGTCTCAGACCTTGCAGAAGCTGCAAACTTTTCCTTGATTCTTTATTCAGCAACGAACCAGTGTCTACTACAATGGTCCATCTCTTCTTTTCCATGAAACTCTCATTCTGCAGATAGGCCGCAAATTAGAGCTCACTACATTTAAACCAGAGAGACAACTATAATACTAGTTTGTATACTTTGAGCAATGAAACTTTGGAAAAACACTATTATAGCTAATTTGTTGAACGACCAATTTCAAGAAGACTAATCCAAATCTATGACCTTTCAGAAGCATGCTTCTCTGTTTATGCTAAATTTGAAAAAAGAAGAAGTTTTCAGCATAAAGTTTTGACATTTAACTTACGAAGAAGGGGCATAGTTCCATAGTCTCTGGATGCTGGATTGGATAATCTCTCAACTTAATGTTCTCTTCTGGAGATATTGAGCTGGTCTTTACAGGGTAGTTCACAAGAAGTGACTGCAAAGGCACCCTATCCATTCTGTTCTTCACTGTGTTTACCTCCAATCTTGCTGGATATCTGGGGGCAAGGATTGTTGATTTCTGTTCTTCAAGAACTTTGTCATTCAGATTATCTTTCTCAGAGGAGAATGGAGTTCCATTTTGATGGAAAATAGGATCAACTACATTGTCTAGAGAAAATTTAAATGATTCTAGCTTTAGATCTTCCAACTTCCCTATTTTCTTCATTGATCTCATCAAACGAGTATCAGGTGTCATATTCTCTTTATCTGGAGTGAAAATTTCTTCATCATTTTCATCCACATTTGGCTGTGTTGATTTAGTAGTTGATCCTAGCTTCTCCTTTTTGTGGGATACACAACCTGCTGCCTGATTGGACCTGGGCTCAACCACAAGTTTCAGAGATGAAGATTTAAACAGTTTTGGATGCTTAATTTGATGTTGGCTTCCAATCTTCTTCATTAACCTCAGACGACGAGTTTCTGGTGTCATATTCTCTTTGTCTGGGGTAAAAGTTTCTTCATCAGTCTCATCCATATTAGAAAGCACAGACTTTCTACCCGATCTATTTGTCATCTCAGAAAGACACGATTTCTTCATAGATCCAAGGAAGAGAGAACTGGGAGTATGGTTCTCTTTGTCAGGAGTAAAGACCTCTTCCTCTTTATCCTTGTTTCCACTAGCAAAAAGATCTTTAGAAACTGATATAGTTCCTTCTATTTCACGATTAATTGATTCAACTTCAGTTTCCATGTCAATATTTTCATTCATTGCTCTATCTTTACCAGTTTGAATCTGAACATTGGAGTGTTTTCCCCTTCTAGACCAAATACTTGAACATCTTTGCTGAGATCTTGGTGGGGTACCATCTGCATTTTCATTTGGAGACTGTCCTGGGACAAGAAGAGCTTCTGGTATGCTGTTTTCCTTGTCAGCTTGGTAAGCAGGCTGCCGCAAACTGATTTCACCTTCTTCATGGATATTCCCTGGTAGATTTTCGTTTGCGGCCACATTTTTATCAAGCATTGGAGGAGCTGGTGGAGTCAAACTTCTCAGACGCGGTAATGAACTCATACCAGAAAATGATGAGTCTAGACCTTGCACCATATCATAATCCTCTTTCTGAATTTGGTCATTCTGGAGAGAAAAGCCACTCTCATCCTAGAAGATCAATAAATGCATATAGCACGGCACAGGATAAAAGTTAGAGCAAACAACAAAAGAATAAGAAAATTGAGCTACTAAACCTTATTCAGTTCAGTATTAAGATACTGATTCAACTCACCTGATGTTGTTCCTCCTGTGTGCTTTCTTCTGGTTCAGATTCACAAAGAGTAGGTACAAAAGGATTCTCCAAATCATATGCATGGCTGATTGGAACCCAATGAAGCCTGTAAACCCTGCTGGAACCTCCAAGTTGCATCCTATCACCTTCTTTCAACTCCACCTTAACTCCTGATTCAAGTTTCTTACCAGAAATCCATGTCCCATGTACTGCAAAGAACAAGATACCGACAGAAAATGACCTTACTGATTAACCGAAAGAAGCAAGATATCAGAAAAAAGGAAACGAAAAACTATAAAGAAGAGA</genome_strand>
        <mrna_strand>GTAATATAAAGAAATTTTCAGTAATTGCTGATCTTAAAACACATGAAAAGCATTGTGGAAAGGATAAGTGGCTTTGTTCCTGTGGAACAACATTTTTTAGGAAAGACAAGCTTTTTGGACACATTTCCCTTTTTCAAGGTCATACTCCTGCAGTTTTTCCGGATGAAACTAAAGGATTTGTTGGGACATTTGACCGGGGCCAAACCAGTGAAGTCCCCATGAAAGCTCGACAAGAGAACTATAAGGTAAATGCTTCACATGGCAATGAGTTTCAAAATCCCGGGGTTGTAAAAGAGTGTCCATACAATCCAAGCAGTTATTTTTCCCCTTTGAACTTTGATACGAGCAATTTTAATGGATTTCAAGAGTTCCCTCGACCCCCATTTGATGAGTCAGATAGCTCATTTTCATTTTTGCTATTTGGATCATGTGAATACCCTCCTCACAAGGCTGCCAAATTTATGAGTTTTAGTGAAATGGAATAACATCAACCAGTATTCAATTTGTCTTTGGTTCATTGTAGCTATCTATTTTATCATGTCATT-TT-TTTTTTCAGAATAACTGTGTTTTCCTTGAGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAAAAAAA.................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438313" ref_strand="+" ref_description="SGN-E438313 [cSTA-7-K24]">
      <seq>tttctctccagaatgaccaaattcagaaggaggattatgatatggtgcaaggtctacactcatcattttctggtatgagttcattgccacgtctgagaagcttgactccaccagctcctccaatgcttgataaatatggagcagaaaaccaaaatctaccagggaatatccgtgaagaaggtgaaatcagtttgctgcaccctgcttaccaaactgacaaggaaaatagcacaccacaggctcttcttgtctcaggacagtccccaaatgaaaatgcagatggtaccccaccaagatctcagcaaagatgttcaagtatttggtctacaaggggaaaaccctccaatgttcagattcaaactggtaaagatagagcaatgaatgaaaaaattcacatggaaactgaagttgaatcgattaatcgtgaaatagcaggaactgtatcagtttctaaagatctttttgctagtggaaacaatgataaagaagaagaggtctttactcctgacaaagagaaccatactcctagttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="+" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="71897" stop="73031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72197" g_stop="72731" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="+" ref_id="SGN-E438313" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72197" e_stop="72731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCCAGAATGACCAAATTCAGAAAGAGGATTATGATATGGTGCAAGGTCTAGACTCATCATTTTCTGGTATGAGTTCATTACCGCGTCTGAGAAGTTTGACTCCACCAGCTCCTCCAATGCTTGATAAAAATGTGGCCGCAAACGAAAATCTACCAGGGAATATCCATGAAGAAGGTGAAATCAGTTTGCGGCAGCCTGCTTACCAAGCTGACAAGGAAAACAGCATACCAGAAGCTCTTCTTGTCCCAGGACAGTCTCCAAATGAAAATGCAGATGGTACCCCACCAAGATCTCAGCAAAGATGTTCAAGTATTTGGTCTAGAAGGGGAAAACACTCCAATGTTCAGATTCAAACTGGTAAAGATAGAGCAATGAATGAAAATATTGACATGGAAACTGAAGTTGAATCAATTAATCGTGAAATAGAAGGAACTATATCAGTTTCTAAAGATCTTTTTGCTAGTGGAAACAAGGATAAAGAGGAAGAGGTCTTTACTCCTGACAAAGAGAACCATACTCCCAGTTCTCT</genome_strand>
        <mrna_strand>TTTCTCTCCAGAATGACCAAATTCAGAAGGAGGATTATGATATGGTGCAAGGTCTACACTCATCATTTTCTGGTATGAGTTCATTGCCACGTCTGAGAAGCTTGACTCCACCAGCTCCTCCAATGCTTGATAAATATGGAGCAGAAAACCAAAATCTACCAGGGAATATCCGTGAAGAAGGTGAAATCAGTTTGCTGCACCCTGCTTACCAAACTGACAAGGAAAATAGCACACCACAGGCTCTTCTTGTCTCAGGACAGTCCCCAAATGAAAATGCAGATGGTACCCCACCAAGATCTCAGCAAAGATGTTCAAGTATTTGGTCTACAAGGGGAAAACCCTCCAATGTTCAGATTCAAACTGGTAAAGATAGAGCAATGAATGAAAAAATTCACATGGAAACTGAAGTTGAATCGATTAATCGTGAAATAGCAGGAACTGTATCAGTTTCTAAAGATCTTTTTGCTAGTGGAAACAATGATAAAGAAGAAGAGGTCTTTACTCCTGACAAAGAGAACCATACTCCTAGTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346659" ref_strand="+" ref_description="SGN-E346659 [cTOF-28-I7]">
      <seq>tccttgttgacagtcataagagaattggattgcatgaagaggcgtgctagtctatttagaaggacaactgaggtatctgcagcattagaatggatagaagactgcatgataaatgcaaaggcatggattcatgtacagagttgtgcagaggaaacaagaagcagtggcaccaacccctcctgctacagctccattgtctttgttcagtgaggagaatggcatgtttcctgttggctcacatcaattttctccacatagtggtctaatggattttgcctcacccacagcagaagatcatatccttgaatatgccctcttcttcaaaagaaccaacagaaacggacaactcgtccttcttagcaacgatcttaccatgaaaatcaaagccatggcagaaggtttgaactgtgagacagcagaagagttccgcgagagcttagtgaatccattctctgagagatttctttggaaggacagctctcccaggggaaggacttggtcatgtgaggatgactttgttcttagggaaacatattaccacggccctccaaagaagccatcaatgtcaggagaagctgcaaaagggttgaagctcatattgctccataattctcattntaggtgccacatcagtacagccagttgaatcagttaggtattataggctgtgtacaaccttttcttttcaattgcaacaatcatgttcaatttcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="+" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="73613" stop="75001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73913" g_stop="74308" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74309" i_stop="74382" i_length="74">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74383" g_stop="74701" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="717" r_length="320" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="+" ref_id="SGN-E346659" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73913" e_stop="74308"/>
          <exon e_start="74383" e_stop="74701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTGTTGACAGTCATAAGAGAATTGGATTGCATGAAGAGGCGTGCTAGTCTATTTAGAAGGACAACTGAGGTATCTGCAGCATTAGAATGGATAGAAGACTGCATGATAAATGCAAAGGCATGGATTCATGTACAGAGTTGTGCAGAGGAAACAAG-AGCAGTGGCACCAACCCCTCCTGCTACAGCTCCATTGTCTTTGTTCAGTGAGGAGAATGGCATGTTTCCTGTTGGCTCACATCAATTTTCTCCACATAGTGGTCTAATGGATTTTGCCTCACCCACAGCAGAAGATCATATCCTTGAATATGCCCTCTTCTTCAAAAGAACCAACAGAAACGGACAACTCGTCCTTCTTAGCAACGATCTTACCATGAAAATCAAAGCCATGGCAGAAGTAAGACCATAAAAAAACCACCATCCAAGCTGTACATGGTGAATTTTCATTCTAACATTTATTTACACTTGCAGGGTTTGAACTGTGAGACAGCAGAAGAGTTCCGCGAGAGCTTAGTGAATCCATTCTCTGAGAGATTTCTTTGGAAGGACAGCTCTCCCAGGGGAAGGACTTGGTCATGTGAGGATGACTTTGTTCTTAGGGAAACATATTACCACGGCCCTCCAAAGAAGCCATCAATGTCAGGAGAAGCTGCAAAAGGGTTGAAGCTCATATTGCTCCATAATTCTCATTTTAGGTGCCACATCAGTACAGCCAGTTGAATCAGTTAGGTATTATA-GCTGTGTACAACCTTTTCTTTTCAATTGCAACAATCATGTTCAATTTCTTTTG</genome_strand>
        <mrna_strand>TCCTTGTTGACAGTCATAAGAGAATTGGATTGCATGAAGAGGCGTGCTAGTCTATTTAGAAGGACAACTGAGGTATCTGCAGCATTAGAATGGATAGAAGACTGCATGATAAATGCAAAGGCATGGATTCATGTACAGAGTTGTGCAGAGGAAACAAGAAGCAGTGGCACCAACCCCTCCTGCTACAGCTCCATTGTCTTTGTTCAGTGAGGAGAATGGCATGTTTCCTGTTGGCTCACATCAATTTTCTCCACATAGTGGTCTAATGGATTTTGCCTCACCCACAGCAGAAGATCATATCCTTGAATATGCCCTCTTCTTCAAAAGAACCAACAGAAACGGACAACTCGTCCTTCTTAGCAACGATCTTACCATGAAAATCAAAGCCATGGCAGAA..........................................................................GGTTTGAACTGTGAGACAGCAGAAGAGTTCCGCGAGAGCTTAGTGAATCCATTCTCTGAGAGATTTCTTTGGAAGGACAGCTCTCCCAGGGGAAGGACTTGGTCATGTGAGGATGACTTTGTTCTTAGGGAAACATATTACCACGGCCCTCCAAAGAAGCCATCAATGTCAGGAGAAGCTGCAAAAGGGTTGAAGCTCATATTGCTCCATAATTCTCATTNTAGGTGCCACATCAGTACAGCCAGTTGAATCAGTTAGGTATTATAGGCTGTGTACAACCTTTTCTTTTCAATTGCAACAATCATGTTCAATTTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577549" ref_strand="+" ref_description="SGN-E577549 [60125]">
      <seq>atagcaacaatgatactaaataacttgtggaaaaaacagttattctgaaaaaaaaaatgacatgatagaataatagctacaatgaaccaaagacaaattgaatactggttgatgttattccatttcactagaactcataaattttgcagccttgtgaggagggtattcacatgatccagatagcagaaatgagaatgagctatctgactcatcaaatggtggtcgagggaactcttgaaatccattaagattgctagtatcaaagttcaaaggtgagtaataactgcttggattgtatggacactcttttacaaccccgggattttgaaactcattgccatgtgaagcatttaccttatagttttcttgtcgagctttcatggtgacttcactggtttggccccggtcagatgtcccagcagatcctttagtttcatccggagaaactgcaggagtatgaccttgaaaaagggaaatatgtccaaaaagcttgtctttcctagaaaatgttgttccacaggaacaaagccacttatcctttccacaatgcttttcatgtgttttaagatcagcaattactgaaaatttcttaatattgcatctactgcaagtataggctttctcacagtgggttctcttgtaatggtttttcacacataagatggtcttaagaggttgaaacttttttatgctccttattgcgcttgcatccaacataaggacaggaatactttttgatgaggtgttggctcagaactggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="+" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="74728" stop="76089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75028" g_stop="75789" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="+" ref_id="SGN-E577549" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75028" e_stop="75789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCAACAATTATACTATATAACTTAAGGAAAACACAGTTACTCTGAAAATATAATAATGACATAATAGAATAAATAGCTACAATGAACCAAAGACAAATTGAATACTGGTTGATGTTATTCCATTTCACTAGAACTCATAAATTTTGCAGCCTTGTGAGGAGGGTATTCACATGATCCAGACAGCAGAAATGAGAATGAGCTATCTGACTCGTCAAATGGTGGTCGAGGGAACTCTTGAAATCCATTAAGATTGCTAGTATCGAAGTTCAAAGGTGAGAAATAACTGCTTGGATTGTATGGACACTCTTTTACAACCCCGGGATTTTGAAACTCATTGCCAAGTGAAGCATTTACCTTATAGTTTTCTTGTCGAGCTTTCATGGTGACTTCACCGGTTTGGCCCCGGTCAGATGTCCCAGCAGATCCTTTAGTTTCATCCGGAGAAACTGCAGGAGTATGACCTTGAAAAAGGGAAATGTGTCCAAAAAGCTTGTCTTTCCTCGAAAATGTTGTTCCACAGGAACAAAGCCACTTATCCTTTCCACAATGCTTTTCATGTGTTTTAAGATCAGCAATTACTGAAAATTTCTTAATGTTACATCTACTGCAAGTATAGGCTTTCTCACAGTGGGTTCTCTTGTAATGGTTTTTCACACATAAGATGGTTTTGAGAGGTTGAAAC-TTTTTATGCTCCTTATTGCGCTTGCATCCAACATACGGACAGGAATACCTTTTGATGA-GTGTTGGCTCAGAACTGGG</genome_strand>
        <mrna_strand>ATAGCAACAATGATACTAAATAACTTGTGGAAAAAACAGTTATTCTGAAAA-A-AAAAATGACATGATAGAAT-AATAGCTACAATGAACCAAAGACAAATTGAATACTGGTTGATGTTATTCCATTTCACTAGAACTCATAAATTTTGCAGCCTTGTGAGGAGGGTATTCACATGATCCAGATAGCAGAAATGAGAATGAGCTATCTGACTCATCAAATGGTGGTCGAGGGAACTCTTGAAATCCATTAAGATTGCTAGTATCAAAGTTCAAAGGTGAGTAATAACTGCTTGGATTGTATGGACACTCTTTTACAACCCCGGGATTTTGAAACTCATTGCCATGTGAAGCATTTACCTTATAGTTTTCTTGTCGAGCTTTCATGGTGACTTCACTGGTTTGGCCCCGGTCAGATGTCCCAGCAGATCCTTTAGTTTCATCCGGAGAAACTGCAGGAGTATGACCTTGAAAAAGGGAAATATGTCCAAAAAGCTTGTCTTTCCTAGAAAATGTTGTTCCACAGGAACAAAGCCACTTATCCTTTCCACAATGCTTTTCATGTGTTTTAAGATCAGCAATTACTGAAAATTTCTTAATATTGCATCTACTGCAAGTATAGGCTTTCTCACAGTGGGTTCTCTTGTAATGGTTTTTCACACATAAGATGGTCTTAAGAGGTTGAAACTTTTTTATGCTCCTTATTGCGCTTGCATCCAACATAAGGACAGGAATACTTTTTGATGAGGTGTTGGCTCAGAACTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404266" ref_strand="-" ref_description="SGN-E404266 [PPC-13-M5]">
      <seq>aaagaaattttcagtaattgctgatcttaaaacacatgaaaagcattgtggaaaggataagtggctttgttcctgtggaacaacattttctaggaaagacaagctttttggacacatttccctttttcaaggtcatactcctgcagtttctccggatgaaactaaaggatctgctgggacatctgaccggggccaaaccagtgaagtcaccatgaaagctcgacaagagaactataaggtaaatgcttcacatggcaatgagtttcaaaatcccggggttgtaaaagagtgtccatacaatccaagcagttatttttcccctttgaactttgatacgagcaattttaatggatttcaagagttccctcgacccccatttgatgagtcagatagctcattttcatttttgctatttggatcatgtgaataccctcctcacaaggctgccaaatttatgagttttagtgaaatggaataacatcaaccagtattcaatttgtctttggttcattgtagctatttattttatcatgtcattttttttttcagaataactgtgttttccttgagttatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="75921" stop="74738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75622" g_stop="75044" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="578" polyA_stop="615"/>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E404266" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404266" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75622" e_stop="75044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAAATTTTCAGTAATTGCTGATCTTAAAACACATGAAAAGCATTGTGGAAAGGATAAGTGGCTTTGTTCCTGTGGAACAACATTTTCGAGGAAAGACAAGCTTTTTGGACACATTTCCCTTTTTCAAGGTCATACTCCTGCAGTTTCTCCGGATGAAACTAAAGGATCTGCTGGGACATCTGACCGGGGCCAAACCGGTGAAGTCACCATGAAAGCTCGACAAGAAAACTATAAGGTAAATGCTTCACTTGGCAATGAGTTTCAAAATCCCGGGGTTGTAAAAGAGTGTCCATACAATCCAAGCAGTTATTTCTCACCTTTGAACTTCGATACTAGCAATCTTAATGGATTTCAAGAGTTCCCTCGACCACCATTTGACGAGTCAGATAGCTCATTCTCATTTCTGCTGTCTGGATCATGTGAATACCCTCCTCACAAGGCTGCAAAATTTATGAGTTCTAGTGAAATGGAATAACATCAACCAGTATTCAATTTGTCTTTGGTTCATTGTAGCTATTTATTCTATTATGTCATTATTATATTTTCAGAGTAACTGTGTTTTCCTTAAGTTATATA</genome_strand>
        <mrna_strand>AAAGAAATTTTCAGTAATTGCTGATCTTAAAACACATGAAAAGCATTGTGGAAAGGATAAGTGGCTTTGTTCCTGTGGAACAACATTTTCTAGGAAAGACAAGCTTTTTGGACACATTTCCCTTTTTCAAGGTCATACTCCTGCAGTTTCTCCGGATGAAACTAAAGGATCTGCTGGGACATCTGACCGGGGCCAAACCAGTGAAGTCACCATGAAAGCTCGACAAGAGAACTATAAGGTAAATGCTTCACATGGCAATGAGTTTCAAAATCCCGGGGTTGTAAAAGAGTGTCCATACAATCCAAGCAGTTATTTTTCCCCTTTGAACTTTGATACGAGCAATTTTAATGGATTTCAAGAGTTCCCTCGACCCCCATTTGATGAGTCAGATAGCTCATTTTCATTTTTGCTATTTGGATCATGTGAATACCCTCCTCACAAGGCTGCCAAATTTATGAGTTTTAGTGAAATGGAATAACATCAACCAGTATTCAATTTGTCTTTGGTTCATTGTAGCTATTTATTTTATCATGTCATT-TT-TTTTTTCAGAATAACTGTGTTTTCCTTGAGTTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354931" ref_strand="+" ref_description="SGN-E354931 [cTOS-19-A20]">
      <seq>ttcagtaattgctgatcttaaaacacatgaaaagcattgtggaaaggataagtggctttgttcctgtggaacaacattttcgaggaaagacaagctttttggacacatttccctttttcaaggtcatactcctgcagtttctccggatgaaactaaaggatctgctgggacatctgaccggggccaaaccggtgaagtcaccatgaaagctcgacaagaaaactataaggtaaatgcttcacttggcaatgagtttcaaaatcccggggttgtaaaagagtgtccatacaatccaagcagttatttctcacctttgaacttcgatactagcaatcttaatggatttcaagagttccctcgaccaccatttgacgagtcagatagctcattctcatttctgctgtctggatcatgtgaataccctcctcacaaggctgcaaaatttatgagttctagtgaaatggaataacatcaaccagtattcaatttgtctttggttcattgtagctatttattctattatgtcattattatattttcagagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="75913" stop="74767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75613" g_stop="75059" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E354931" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75613" e_stop="75059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTAATTGCTGATCTTAAAACACATGAAAAGCATTGTGGAAAGGATAAGTGGCTTTGTTCCTGTGGAACAACATTTTCGAGGAAAGACAAGCTTTTTGGACACATTTCCCTTTTTCAAGGTCATACTCCTGCAGTTTCTCCGGATGAAACTAAAGGATCTGCTGGGACATCTGACCGGGGCCAAACCGGTGAAGTCACCATGAAAGCTCGACAAGAAAACTATAAGGTAAATGCTTCACTTGGCAATGAGTTTCAAAATCCCGGGGTTGTAAAAGAGTGTCCATACAATCCAAGCAGTTATTTCTCACCTTTGAACTTCGATACTAGCAATCTTAATGGATTTCAAGAGTTCCCTCGACCACCATTTGACGAGTCAGATAGCTCATTCTCATTTCTGCTGTCTGGATCATGTGAATACCCTCCTCACAAGGCTGCAAAATTTATGAGTTCTAGTGAAATGGAATAACATCAACCAGTATTCAATTTGTCTTTGGTTCATTGTAGCTATTTATTCTATTATGTCATTATTATATTTTCAGAGTAACTGTGTTT</genome_strand>
        <mrna_strand>TTCAGTAATTGCTGATCTTAAAACACATGAAAAGCATTGTGGAAAGGATAAGTGGCTTTGTTCCTGTGGAACAACATTTTCGAGGAAAGACAAGCTTTTTGGACACATTTCCCTTTTTCAAGGTCATACTCCTGCAGTTTCTCCGGATGAAACTAAAGGATCTGCTGGGACATCTGACCGGGGCCAAACCGGTGAAGTCACCATGAAAGCTCGACAAGAAAACTATAAGGTAAATGCTTCACTTGGCAATGAGTTTCAAAATCCCGGGGTTGTAAAAGAGTGTCCATACAATCCAAGCAGTTATTTCTCACCTTTGAACTTCGATACTAGCAATCTTAATGGATTTCAAGAGTTCCCTCGACCACCATTTGACGAGTCAGATAGCTCATTCTCATTTCTGCTGTCTGGATCATGTGAATACCCTCCTCACAAGGCTGCAAAATTTATGAGTTCTAGTGAAATGGAATAACATCAACCAGTATTCAATTTGTCTTTGGTTCATTGTAGCTATTTATTCTATTATGTCATTATTATATTTTCAGAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613470" ref_strand="+" ref_description="SGN-E613470 [63245]">
      <seq>cttcacatggcaatgagttcaaaatcccggggttgtaaaagagtgtccatacaatccaagcagttatttctcacctttgaactttgatacgagcaatcttaatggatttcaagagttccctcgaccaccatttgatgagtcagatagctcattctcatttctgctatctggatcatgtgaataccctcctcacaaggctgccaaatttatgagttctagtgaaatggaataacatcaaccagtattcaatttgtctttggttcattgtagctatctattctatcatgtcattttttttttcagaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="75677" stop="74767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75377" g_stop="75071" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="305" polyA_stop="326"/>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E613470" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75377" e_stop="75071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCACTTGGCAATGAGTTTCAAAATCCCGGGGTTGTAAAAGAGTGTCCATACAATCCAAGCAGTTATTTCTCACCTTTGAACTTCGATACTAGCAATCTTAATGGATTTCAAGAGTTCCCTCGACCACCATTTGACGAGTCAGATAGCTCATTCTCATTTCTGCTGTCTGGATCATGTGAATACCCTCCTCACAAGGCTGCAAAATTTATGAGTTCTAGTGAAATGGAATAACATCAACCAGTATTCAATTTGTCTTTGGTTCATTGTAGCTATTTATTCTATTATGTCATTATTATATTTTCAGA</genome_strand>
        <mrna_strand>CTTCACATGGCAATGAG-TTCAAAATCCCGGGGTTGTAAAAGAGTGTCCATACAATCCAAGCAGTTATTTCTCACCTTTGAACTTTGATACGAGCAATCTTAATGGATTTCAAGAGTTCCCTCGACCACCATTTGATGAGTCAGATAGCTCATTCTCATTTCTGCTATCTGGATCATGTGAATACCCTCCTCACAAGGCTGCCAAATTTATGAGTTCTAGTGAAATGGAATAACATCAACCAGTATTCAATTTGTCTTTGGTTCATTGTAGCTATCTATTCTATCATGTCATT-TT-TTTTTTCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713468" ref_strand="+" ref_description="SGN-E713468 [FB08CH06]">
      <seq>cgatgaagagaaccttcctcccggttcctatgagattctacagttggaaaaagaggaaatccttgcaccacacactcacttttgcacaatttgtggcaagggatttaagagggatgcgaatttgcgaatgcacatgagaggtcatggagatgagtacaagactccagcagctcttgcaaagcctcataaagaacccagttctgagccaacactcatcaaaaggtattcctgtccgtatgttggatgcaagcgcaataaggagcataaaaagtttcaacctctcaaaaccatcttatgtgtgaaaaaccattacaagagaacccactgtgagaaagcctatacttgtagtagatgtaacattaagaaattttcagtaattgctgatcttaaaacacatgaaaagcattgtggaaaggataagtggctttgttcctgtggaacaacattttcgaggaaagacaagctttttggacacatttccctttttcaaggtcatactcctgcagtttctccggatgaaactaaaggatctgctgggacatctgaccggggccaaaccggtgaagtcaccatgaaagctcgacaagaaaactataaggtaaatgcttcacatggcaatgagtttcaaaatcccggggttgtaaaagagtgtccatacaatccaagcagttatttctcacctttgaacttcgatactagcaatcttaatggatttcaagagttccctcgaccaccatttgacgagtcagatagctcattctcatttctgctgtctggatcatgtgaataccctcctcacaaggctgcaaaatttatgagttctagtgaaatgggataacatcaaccagtattcgattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="76281" stop="74826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75982" g_stop="75136" g_length="847"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="847" r_length="847" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E713468" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75982" e_stop="75136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAAGAGAACCTTCCTCCCGGTTCCTATGAGATTCTACAGTTGGAAAAAGAGGAAATCCTTGCACCACACACTCACTTTTGCACAATTTGTGGCAAGGGATTTAAGAGGGATGCGAATTTGCGAATGCACATGAGAGGTCATGGAGATGAGTACAAGACTCCAGCAGCTCTTGCAAAGCCTCATAAAGAACCCAGTTCTGAGCCAACACTCATCAAAAGGTATTCCTGTCCGTATGTTGGATGCAAGCGCAATAAGGAGCATAAAAAGTTTCAACCTCTCAAAACCATCTTATGTGTGAAAAACCATTACAAGAGAACCCACTGTGAGAAAGCCTATACTTGCAGTAGATGTAACATTAAGAAATTTTCAGTAATTGCTGATCTTAAAACACATGAAAAGCATTGTGGAAAGGATAAGTGGCTTTGTTCCTGTGGAACAACATTTTCGAGGAAAGACAAGCTTTTTGGACACATTTCCCTTTTTCAAGGTCATACTCCTGCAGTTTCTCCGGATGAAACTAAAGGATCTGCTGGGACATCTGACCGGGGCCAAACCGGTGAAGTCACCATGAAAGCTCGACAAGAAAACTATAAGGTAAATGCTTCACTTGGCAATGAGTTTCAAAATCCCGGGGTTGTAAAAGAGTGTCCATACAATCCAAGCAGTTATTTCTCACCTTTGAACTTCGATACTAGCAATCTTAATGGATTTCAAGAGTTCCCTCGACCACCATTTGACGAGTCAGATAGCTCATTCTCATTTCTGCTGTCTGGATCATGTGAATACCCTCCTCACAAGGCTGCAAAATTTATGAGTTCTAGTGAAATGGAATAACATCAACCA</genome_strand>
        <mrna_strand>CGATGAAGAGAACCTTCCTCCCGGTTCCTATGAGATTCTACAGTTGGAAAAAGAGGAAATCCTTGCACCACACACTCACTTTTGCACAATTTGTGGCAAGGGATTTAAGAGGGATGCGAATTTGCGAATGCACATGAGAGGTCATGGAGATGAGTACAAGACTCCAGCAGCTCTTGCAAAGCCTCATAAAGAACCCAGTTCTGAGCCAACACTCATCAAAAGGTATTCCTGTCCGTATGTTGGATGCAAGCGCAATAAGGAGCATAAAAAGTTTCAACCTCTCAAAACCATCTTATGTGTGAAAAACCATTACAAGAGAACCCACTGTGAGAAAGCCTATACTTGTAGTAGATGTAACATTAAGAAATTTTCAGTAATTGCTGATCTTAAAACACATGAAAAGCATTGTGGAAAGGATAAGTGGCTTTGTTCCTGTGGAACAACATTTTCGAGGAAAGACAAGCTTTTTGGACACATTTCCCTTTTTCAAGGTCATACTCCTGCAGTTTCTCCGGATGAAACTAAAGGATCTGCTGGGACATCTGACCGGGGCCAAACCGGTGAAGTCACCATGAAAGCTCGACAAGAAAACTATAAGGTAAATGCTTCACATGGCAATGAGTTTCAAAATCCCGGGGTTGTAAAAGAGTGTCCATACAATCCAAGCAGTTATTTCTCACCTTTGAACTTCGATACTAGCAATCTTAATGGATTTCAAGAGTTCCCTCGACCACCATTTGACGAGTCAGATAGCTCATTCTCATTTCTGCTGTCTGGATCATGTGAATACCCTCCTCACAAGGCTGCAAAATTTATGAGTTCTAGTGAAATGGGATAACATCAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446707" ref_strand="+" ref_description="SGN-E446707 [cSTA-22-N3]">
      <seq>cggacatgtatttacggtgttgcgaaggtggaagatcagtcgagccatgtggaccatttgagagattgtgggattgaacacaatcatgctgccgatgaacatgaattaaaagatgaagatgaagctgaggaagaagagaaccttcctcccggttcctatgagattctacaattggaaaaggaggaaatccttgcaccacacactcacttttgcacaatttgtggcaagggatttaagagggatgccaatttgcggatgcacatgagaggtcatggagatgagtacaagactccagcagctcttgcaaagcctcataaagaacccagttctgagccaacactcatcaaaaggtattcctgtccttatgttggatgcaagcgcaataaggagcataaaaagtttcaacctcttaagaccatcttatgtgtgaaaaaccattacaagagaacccactgtgagaaagcctatacttgcagtagatgcaatattaagaaattttcagtaattgctgatcttaaaacacatgaaaagcattgtggaaaggataagtggctttgttcctgtggaacaacattttctaggaaagacaagctttttggacatatttccctttttcaaggtcatactcctgcagtttctccggatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="76407" stop="75163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76110" g_stop="75463" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E446707" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76110" e_stop="75463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACATGTAATGATGGTGTTGCCAAGTTGGAAGATCAATCCAACCACATTGACCAGTTGAGAGATTGTGGGATTGAACACAATCATGCTGCCGATGAACATGAATTAAAAGATGAAGATGAAGCTGAGGAAGAAGAGAACCTTCCTCCCGGTTCCTATGAGATTCTACAGTTGGAAAAAGAGGAAATCCTTGCACCACACACTCACTTTTGCACAATTTGTGGCAAGGGATTTAAGAGGGATGCGAATTTGCGAATGCACATGAGAGGTCATGGAGATGAGTACAAGACTCCAGCAGCTCTTGCAAAGCCTCATAAAGAACCCAGTTCTGAGCCAACACTCATCAAAAGGTATTCCTGTCCGTATGTTGGATGCAAGCGCAATAAGGAGCATAAAAAGTTTCAACCTCTCAAAACCATCTTATGTGTGAAAAACCATTACAAGAGAACCCACTGTGAGAAAGCCTATACTTGCAGTAGATGTAACATTAAGAAATTTTCAGTAATTGCTGATCTTAAAACACATGAAAAGCATTGTGGAAAGGATAAGTGGCTTTGTTCCTGTGGAACAACATTTTCGAGGAAAGACAAGCTTTTTGGACACATTTCCCTTTTTCAAGGTCATACTCCTGCAGTTTCTCCGGATGAA</genome_strand>
        <mrna_strand>CGGACATGTATTTACGGTGTTGCGAAGGTGGAAGATCAGTCGAGCCATGTGGACCATTTGAGAGATTGTGGGATTGAACACAATCATGCTGCCGATGAACATGAATTAAAAGATGAAGATGAAGCTGAGGAAGAAGAGAACCTTCCTCCCGGTTCCTATGAGATTCTACAATTGGAAAAGGAGGAAATCCTTGCACCACACACTCACTTTTGCACAATTTGTGGCAAGGGATTTAAGAGGGATGCCAATTTGCGGATGCACATGAGAGGTCATGGAGATGAGTACAAGACTCCAGCAGCTCTTGCAAAGCCTCATAAAGAACCCAGTTCTGAGCCAACACTCATCAAAAGGTATTCCTGTCCTTATGTTGGATGCAAGCGCAATAAGGAGCATAAAAAGTTTCAACCTCTTAAGACCATCTTATGTGTGAAAAACCATTACAAGAGAACCCACTGTGAGAAAGCCTATACTTGCAGTAGATGCAATATTAAGAAATTTTCAGTAATTGCTGATCTTAAAACACATGAAAAGCATTGTGGAAAGGATAAGTGGCTTTGTTCCTGTGGAACAACATTTTCTAGGAAAGACAAGCTTTTTGGACATATTTCCCTTTTTCAAGGTCATACTCCTGCAGTTTCTCCGGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576653" ref_strand="+" ref_description="SGN-E576653 [59904]">
      <seq>cagcaacaacagttaatcacagctgatcttacctctattatagtccaattgatatcaactgcaggaagtcttcttccaactatgaagcacacactttcctctgcgatccctgctgccagccagcttgggcaggctggtggtgtcacagtttcttctacagcaggtactagtgctggtgggctgacatgtaatgacagtgttgcgaaggtggaagatcagtccaaccatgttgaccagttgagagattgtgggattgaacacaatcatgctgccgatgaacatgaattaaaagatgaagatgaagctgaggaagaagagaaccttcctcccggttcctatgagattctacaattggaaaaggaggaaatccttgcaccacacactcacttttgcacaatttgtggcaagggatttaagagggatgccaatttgcggatgcacatgagaggtcatggagatgagtacaagactccagcagctcttgcaaagcctcataaagaacccagttctgagccaatactcatcaaaaggtattcctgtccttatgttggatgcaagcgcaataaggagcantaaaaattttcaacctcttaaggacgatctttatgctgtgaaaaaccattaccagagaacccactgtgagaaaagccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="76590" stop="75344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76290" g_stop="75644" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E576653" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76290" e_stop="75644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAACAACAGTTAATCACAGCTGATCTTACTTCTATTATAGTCCAATTGATATCAACTGCAGGAAGTCTTCTTCCAACTATGAAGTACACTCTTTCCTCTGCGATTCCTGCTGCCAGCCAGCTTGGGCAGGTTGGTGGTGTCACAGTTCCTTCTACAGCAGGTACTAGTGCTGGTGGGCTAACATGTAATGATGGTGTTGCCAAGTTGGAAGATCAATCCAACCACATTGACCAGTTGAGAGATTGTGGGATTGAACACAATCATGCTGCCGATGAACATGAATTAAAAGATGAAGATGAAGCTGAGGAAGAAGAGAACCTTCCTCCCGGTTCCTATGAGATTCTACAGTTGGAAAAAGAGGAAATCCTTGCACCACACACTCACTTTTGCACAATTTGTGGCAAGGGATTTAAGAGGGATGCGAATTTGCGAATGCACATGAGAGGTCATGGAGATGAGTACAAGACTCCAGCAGCTCTTGCAAAGCCTCATAAAGAACCCAGTTCTGAGCCAACACTCATCAAAAGGTATTCCTGTCCGTATGTTGGATGCAAGCGCAATAAGGAGCA-TAAAAAGTTTCAACCTCTCAA-AACCATC-TTATG-TGTGAAAAACCATTACAAGAGAACCCACTGTGAG-AAAGCCTA</genome_strand>
        <mrna_strand>CAGCAACAACAGTTAATCACAGCTGATCTTACCTCTATTATAGTCCAATTGATATCAACTGCAGGAAGTCTTCTTCCAACTATGAAGCACACACTTTCCTCTGCGATCCCTGCTGCCAGCCAGCTTGGGCAGGCTGGTGGTGTCACAGTTTCTTCTACAGCAGGTACTAGTGCTGGTGGGCTGACATGTAATGACAGTGTTGCGAAGGTGGAAGATCAGTCCAACCATGTTGACCAGTTGAGAGATTGTGGGATTGAACACAATCATGCTGCCGATGAACATGAATTAAAAGATGAAGATGAAGCTGAGGAAGAAGAGAACCTTCCTCCCGGTTCCTATGAGATTCTACAATTGGAAAAGGAGGAAATCCTTGCACCACACACTCACTTTTGCACAATTTGTGGCAAGGGATTTAAGAGGGATGCCAATTTGCGGATGCACATGAGAGGTCATGGAGATGAGTACAAGACTCCAGCAGCTCTTGCAAAGCCTCATAAAGAACCCAGTTCTGAGCCAATACTCATCAAAAGGTATTCCTGTCCTTATGTTGGATGCAAGCGCAATAAGGAGCANTAAAAATTTTCAACCTCTTAAGGACGATCTTTATGCTGTGAAAAACCATTACCAGAGAACCCACTGTGAGAAAAGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448687" ref_strand="+" ref_description="SGN-E448687 [cSTS-3-N10]">
      <seq>gaaagaagaaccattggctgaccttcaatctggaagcagattcagatatggatcctgacgacagtctaagtgaagatccttggataaagtcttcttcgtctggcaatgaattgctgaaaattatgcccacagataaccattcatttaccaatttaaatctgcatgcgcagaagtgggaaggttcctcttatttagatcaacaaaacaggattgagcaacagttttctggatttgctaaaccaaaagacacatctgagatggatcaacaggggcatcagaggaatgaaaatcatgacacgaccagaatacatgactgggatccaagagctttgctgaacaacctttcgtttctcgaacaaaagattcatcagctccaggagctggtgcatttgattgttgggcggagaggtcaagatggggttcagggaaatgaccttatagttcagcaacaacagttaatcacagctgatcttacctctattatagtccaattgatatcaactgcaggaagtcttcttccaactatgaagcacacactttcctctgcgatccctgctgccagccagcttgggcaggttggtggtgtcacagtttcttctacagcaggtactagtgctggtgggcggacatgtaatgaccgtgttgcgaaggtggaagatcagtccaaccatgttgaccagttgagagattgtgggattgaacacaatcatgctgccgatgaacatgaattaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="78016" stop="75699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77716" g_stop="77685" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77684" i_stop="76693" i_length="992">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76692" g_stop="75999" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="735" r_length="703" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E448687" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77716" e_stop="77685"/>
          <exon e_start="76692" e_stop="75999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAAGAACCATTGGCTGACCTTCAATCTGGTGAGTTTTCATTATTTCTATCCTAACACTTTGTCTCTATATGGTGTGTGTATCTCTGATGACTTCTTGCTGAAAAGTTTACAACTTTTAAACTGTTTTTTCCTTTTTGTCTTTGATGAGTTGACAATAGGATGTTTTATAGAAAAAGATTGAATCTTTGATGTGCAACCTGTATTGGGGTTTTCTCAGATTTTGATGAGATTGAGATCTCCAAATTTTTAAAGAAAATTATTTTGTGGTTGAGTTTCTTTTGGGGTTGTTGGTGAAGGTGTGGATGGTCAAAAAAGACTCCCAAAATGAAATTTGGGTTTCTTTTCTTGATTTTTCTTCTGGGGATGGATTGACCTGCATAAAGGGAAAGGAAGATGAGGGGGTGGGGGCGTTGACCTAGAATTGAACCAAAGTTCCTACCAATCTTTAAACCTGAAAATCACTGGAATTTAGGTTTTTCTAAGTAAAATTTATGTGGTGTGGCCTTTTGTGTTGCATATGTATCTCAAAAGCTATGTCTTCTTACTAAATAGTCTGATGCTTGTGTTTGTGGAAGTTTACTGTGGAGGCTCAGTAGCTGGATTACATGACAACTGAATTAGAAACTAAGATAATAAAGGAATAGCTTTGAGTAGAAATATGTAATTATAGTGTGAACAATTTCTTGTTTGAAAGAATGATTTTGGTCGAACTGTACCATCCATTCTATCGCGCAGACTGTTTGTTTGCCTTGATGTAGTTATGCCGAACAGGTATGATATCATATCATATCATAAAAGCTCATCTGTTGATGTTTGTTTCTTTTTTGATTCTTTGTAAAGGTGTTGTCGAAGTACAGTACTGATAAATTTTTTTGTATAAGTATGATCAATTAATTCACATGTTAACTGAATGAATATTGTTTTCATGCTTGTTTCGTATGGACTCAATTGATTTTGGTTGAAGTGCTCTTATTTTTTCTTTGTTTTACATCTTTTCTTTGTGTACTCTTGTTACCTCAGGAAGCATATTCAGATATGGATCCTGACGACAGTCTAAGTGAAGATCCTTGGATAAAGTCTTCTTCGTCTGGCAACGAATTGCTGAAAATTATGCCCTCAGATAACCATTCATTTACCAATTTAAATCTGCATGAGCAGAAGTGGGAAGGTTCCTCTTATTTGGATCAAGAAATCAGGATTGAGCAACAGTTTACTGGATTTGCTAAACCAAAACACACATCTGAGATGGATCAACA---G-----G-GGAATCAAAATCATGATACGACCAGAATACATGACTGGGATCCAAGAGCTTTGCTAAACAACCTTTCGTTTCTCGAACAAAAGATTCATCAGCTCCAGGAGCTGGTGCATTTGATTGTTGGGCGGAGAGGTCAAGATGAGGTTCAGGGAAATGACCTTATAGTTCAGCAACAACAGTTAATCACAGCTGATCTTACTTCTATTATAGTCCAATTGATATCAACTGCAGGAAGTCTTCTTCCAACTATGAAGTACACTCTTTCCTCTGCGATTCCTGCTGCCAGCCAGCTTGGGCAGGTTGGTGGTGTCACAGTTCCTTCTACAGCAGGTACTAGTGCTGGTGGGCTAACATGTAATGATGGTGTTGCCAAGTTGGAAGATCAATCCAACCACATTGACCAGTTGAGAGATTGTGGGATTGAACACAATCATGCTGCCGATGAACATGAATTAAAAG</genome_strand>
        <mrna_strand>GAAAGAAGAACCATTGGCTGACCTTCAATCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCAGATTCAGATATGGATCCTGACGACAGTCTAAGTGAAGATCCTTGGATAAAGTCTTCTTCGTCTGGCAATGAATTGCTGAAAATTATGCCCACAGATAACCATTCATTTACCAATTTAAATCTGCATGCGCAGAAGTGGGAAGGTTCCTCTTATTTAGATCAACAAAACAGGATTGAGCAACAGTTTTCTGGATTTGCTAAACCAAAAGACACATCTGAGATGGATCAACAGGGGCATCAGAGGAATGAAAATCATGACACGACCAGAATACATGACTGGGATCCAAGAGCTTTGCTGAACAACCTTTCGTTTCTCGAACAAAAGATTCATCAGCTCCAGGAGCTGGTGCATTTGATTGTTGGGCGGAGAGGTCAAGATGGGGTTCAGGGAAATGACCTTATAGTTCAGCAACAACAGTTAATCACAGCTGATCTTACCTCTATTATAGTCCAATTGATATCAACTGCAGGAAGTCTTCTTCCAACTATGAAGCACACACTTTCCTCTGCGATCCCTGCTGCCAGCCAGCTTGGGCAGGTTGGTGGTGTCACAGTTTCTTCTACAGCAGGTACTAGTGCTGGTGGGCGGACATGTAATGACCGTGTTGCGAAGGTGGAAGATCAGTCCAACCATGTTGACCAGTTGAGAGATTGTGGGATTGAACACAATCATGCTGCCGATGAACATGAATTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561825" ref_strand="+" ref_description="SGN-E561825 [19517]">
      <seq>agggaaagaagaacattggctgacttcaatctggaagcagattcagatatggatcctgacgacggtctaagtgaagatccttggataaagtcttcttcgtctggcaatgaattgctgaaaattatgccctcagataaccattcatttaccaatttaaatctgcatgcgcagaagtgggaaggttcctcttatttggatcaacaaaacaggattgagcaacagttttctggatttgctaaaccgaaacacacatctgagatggatcaacaggggcatcagaggaatgaaaatcatgacacgaccagaatacatgactgggatccaagagctttgctgaacaacctttcgtttctcgaacaaaagattcatcagctccaggagctggtgcatttgattgttgggcggagaggtcaagatggggttcagggaaatgaccttatagttcagcaacaacaattaatcacagctgatcttacctctattatagtccaattgatatcaactgcaggaagtcttcttccaactatgaagcacacactttcctctgcgattcctgctgccagccaggcttgggcaggctggtggtgtcacagtttcttctacagcaggtactagatgctggtggggctgacatgtaatgacagtgttgcgaagtggaagatcagtccaaccattgttgaccagttgcagagattgtgggattgaacacaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="76996" stop="75726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76692" g_stop="76026" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="713" r_length="680" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E561825" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76692" e_stop="76026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCATATTCAGATATGGATCCTGACGACAGTCTAAGTGAAGATCCTTGGATAAAGTCTTCTTCGTCTGGCAACGAATTGCTGAAAATTATGCCCTCAGATAACCATTCATTTACCAATTTAAATCTGCATGAGCAGAAGTGGGAAGGTTCCTCTTATTTGGATCAAGAAATCAGGATTGAGCAACAGTTTACTGGATTTGCTAAACCAAAACACACATCTGAGATGGATCAACA---G-----G-GGAATCAAAATCATGATACGACCAGAATACATGACTGGGATCCAAGAGCTTTGCTAAACAACCTTTCGTTTCTCGAACAAAAGATTCATCAGCTCCAGGAGCTGGTGCATTTGATTGTTGGGCGGAGAGGTCAAGATGAGGTTCAGGGAAATGACCTTATAGTTCAGCAACAACAGTTAATCACAGCTGATCTTACTTCTATTATAGTCCAATTGATATCAACTGCAGGAAGTCTTCTTCCAACTATGAAGTACACTCTTTCCTCTGCGATTCCTGCTGCCAGCCA-GCTTGGGCAGGTTGGTGGTGTCACAGTTCCTTCTACAGCAGGTACTAG-TGCTGGT-GGGCTAACATGTAATGATGGTGTTGCCAAGTTGGAAGATCAATCCAACCA-CATTGACCAGTTG-AGAGATTGTGGGATTGAACACAATC</genome_strand>
        <mrna_strand>GAAGCAGATTCAGATATGGATCCTGACGACGGTCTAAGTGAAGATCCTTGGATAAAGTCTTCTTCGTCTGGCAATGAATTGCTGAAAATTATGCCCTCAGATAACCATTCATTTACCAATTTAAATCTGCATGCGCAGAAGTGGGAAGGTTCCTCTTATTTGGATCAACAAAACAGGATTGAGCAACAGTTTTCTGGATTTGCTAAACCGAAACACACATCTGAGATGGATCAACAGGGGCATCAGAGGAATGAAAATCATGACACGACCAGAATACATGACTGGGATCCAAGAGCTTTGCTGAACAACCTTTCGTTTCTCGAACAAAAGATTCATCAGCTCCAGGAGCTGGTGCATTTGATTGTTGGGCGGAGAGGTCAAGATGGGGTTCAGGGAAATGACCTTATAGTTCAGCAACAACAATTAATCACAGCTGATCTTACCTCTATTATAGTCCAATTGATATCAACTGCAGGAAGTCTTCTTCCAACTATGAAGCACACACTTTCCTCTGCGATTCCTGCTGCCAGCCAGGCTTGGGCAGGCTGGTGGTGTCACAGTTTCTTCTACAGCAGGTACTAGATGCTGGTGGGGCTGACATGTAATGACAGTGTTGCGAAG-TGGAAGATCAGTCCAACCATTGTTGACCAGTTGCAGAGATTGTGGGATTGAACACAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307354" ref_strand="+" ref_description="SGN-E307354 [cLEY-12-L16]">
      <seq>aatagttagaaagaagaaccattggctgaccttcaatgctggaagcatattcagatatggatcctgacgacagtctaagtgaagatccttggataaagtcttcttcgtctggcaacgaattgctgaaaattatgccctcagataaccattcatttaccaatttaaatctgcatgagcagaagtgggaaggttcctcttatttggatcaagaaatcaggattgagcaacagtttactggatttgctaaaccaaaacacacatctgagatggatcaacaggggaatcaaaatcatgatacgaccagaatacatgactgggatccaagagctttgctaaacaacctttcgtttctcgaacaaaagattcatcagctccaggagctggtgcatttgattgttgggcggagaggtcaagatgaggttcacggaaatgaccttatagttcagcaacaacagctaatcacagctgatcttacttgtattatagtccaattgatatcacactgcaggaagtcttcttgcaactatgaagtacactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="78024" stop="75897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77724" g_stop="77685" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77684" i_stop="76693" i_length="992">
            <donor d_prob="1.000" d_score="0.93"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76692" g_stop="76197" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="538" r_length="497" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E307354" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77724" e_stop="77685"/>
          <exon e_start="76692" e_stop="76197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGTAAGAAAGAAGAACCATTGGCTGACCTTCAAT-CTGGTGAGTTTTCATTATTTCTATCCTAACACTTTGTCTCTATATGGTGTGTGTATCTCTGATGACTTCTTGCTGAAAAGTTTACAACTTTTAAACTGTTTTTTCCTTTTTGTCTTTGATGAGTTGACAATAGGATGTTTTATAGAAAAAGATTGAATCTTTGATGTGCAACCTGTATTGGGGTTTTCTCAGATTTTGATGAGATTGAGATCTCCAAATTTTTAAAGAAAATTATTTTGTGGTTGAGTTTCTTTTGGGGTTGTTGGTGAAGGTGTGGATGGTCAAAAAAGACTCCCAAAATGAAATTTGGGTTTCTTTTCTTGATTTTTCTTCTGGGGATGGATTGACCTGCATAAAGGGAAAGGAAGATGAGGGGGTGGGGGCGTTGACCTAGAATTGAACCAAAGTTCCTACCAATCTTTAAACCTGAAAATCACTGGAATTTAGGTTTTTCTAAGTAAAATTTATGTGGTGTGGCCTTTTGTGTTGCATATGTATCTCAAAAGCTATGTCTTCTTACTAAATAGTCTGATGCTTGTGTTTGTGGAAGTTTACTGTGGAGGCTCAGTAGCTGGATTACATGACAACTGAATTAGAAACTAAGATAATAAAGGAATAGCTTTGAGTAGAAATATGTAATTATAGTGTGAACAATTTCTTGTTTGAAAGAATGATTTTGGTCGAACTGTACCATCCATTCTATCGCGCAGACTGTTTGTTTGCCTTGATGTAGTTATGCCGAACAGGTATGATATCATATCATATCATAAAAGCTCATCTGTTGATGTTTGTTTCTTTTTTGATTCTTTGTAAAGGTGTTGTCGAAGTACAGTACTGATAAATTTTTTTGTATAAGTATGATCAATTAATTCACATGTTAACTGAATGAATATTGTTTTCATGCTTGTTTCGTATGGACTCAATTGATTTTGGTTGAAGTGCTCTTATTTTTTCTTTGTTTTACATCTTTTCTTTGTGTACTCTTGTTACCTCAGGAAGCATATTCAGATATGGATCCTGACGACAGTCTAAGTGAAGATCCTTGGATAAAGTCTTCTTCGTCTGGCAACGAATTGCTGAAAATTATGCCCTCAGATAACCATTCATTTACCAATTTAAATCTGCATGAGCAGAAGTGGGAAGGTTCCTCTTATTTGGATCAAGAAATCAGGATTGAGCAACAGTTTACTGGATTTGCTAAACCAAAACACACATCTGAGATGGATCAACAGGGGAATCAAAATCATGATACGACCAGAATACATGACTGGGATCCAAGAGCTTTGCTAAACAACCTTTCGTTTCTCGAACAAAAGATTCATCAGCTCCAGGAGCTGGTGCATTTGATTGTTGGGCGGAGAGGTCAAGATGAGGTTCAGGGAAATGACCTTATAGTTCAGCAACAACAGTTAATCACAGCTGATCTTACTTCTATTATAGTCCAATTGATATCA-ACTGCAGGAAGTCTTCTTCCAACTATGAAGTACACTC</genome_strand>
        <mrna_strand>AATAGTTAGAAAGAAGAACCATTGGCTGACCTTCAATGCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCATATTCAGATATGGATCCTGACGACAGTCTAAGTGAAGATCCTTGGATAAAGTCTTCTTCGTCTGGCAACGAATTGCTGAAAATTATGCCCTCAGATAACCATTCATTTACCAATTTAAATCTGCATGAGCAGAAGTGGGAAGGTTCCTCTTATTTGGATCAAGAAATCAGGATTGAGCAACAGTTTACTGGATTTGCTAAACCAAAACACACATCTGAGATGGATCAACAGGGGAATCAAAATCATGATACGACCAGAATACATGACTGGGATCCAAGAGCTTTGCTAAACAACCTTTCGTTTCTCGAACAAAAGATTCATCAGCTCCAGGAGCTGGTGCATTTGATTGTTGGGCGGAGAGGTCAAGATGAGGTTCACGGAAATGACCTTATAGTTCAGCAACAACAGCTAATCACAGCTGATCTTACTTGTATTATAGTCCAATTGATATCACACTGCAGGAAGTCTTCTTGCAACTATGAAGTACACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315372" ref_strand="+" ref_description="SGN-E315372 [cTOA-22-C5]">
      <seq>ttcccaatagtaagaaagaagaaccattggctgaccttcaatctggaagcatattcagatatggatcctgacgacagtctaagtgaagatccttggataaagtcttcttcgtctggcaacgaattgctgaaaattatgccctcagataaccattcatttaccaatttaaatctgcatgagcagaagtgggaaggttcctcttatttggatcaagaaatcaggattgagcaacagtttactggatttgctaaaccaaaacacacatctgagatggatcaacaggggaatcaaaatcatgatacgaccagaatacatgactgggatccaagagctttgctaaacaacctttcgtttctcgaacaaaagattcatcagctccaggagctggtgcatttgattgttgggcggagaggtcaagatgaggttcaaggaaatgaccttatagttcagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="78029" stop="75985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77729" g_stop="77685" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77684" i_stop="76693" i_length="992">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76692" g_stop="76285" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="453" r_length="408" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E315372" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77729" e_stop="77685"/>
          <exon e_start="76692" e_stop="76285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCAATAGTAAGAAAGAAGAACCATTGGCTGACCTTCAATCTGGTGAGTTTTCATTATTTCTATCCTAACACTTTGTCTCTATATGGTGTGTGTATCTCTGATGACTTCTTGCTGAAAAGTTTACAACTTTTAAACTGTTTTTTCCTTTTTGTCTTTGATGAGTTGACAATAGGATGTTTTATAGAAAAAGATTGAATCTTTGATGTGCAACCTGTATTGGGGTTTTCTCAGATTTTGATGAGATTGAGATCTCCAAATTTTTAAAGAAAATTATTTTGTGGTTGAGTTTCTTTTGGGGTTGTTGGTGAAGGTGTGGATGGTCAAAAAAGACTCCCAAAATGAAATTTGGGTTTCTTTTCTTGATTTTTCTTCTGGGGATGGATTGACCTGCATAAAGGGAAAGGAAGATGAGGGGGTGGGGGCGTTGACCTAGAATTGAACCAAAGTTCCTACCAATCTTTAAACCTGAAAATCACTGGAATTTAGGTTTTTCTAAGTAAAATTTATGTGGTGTGGCCTTTTGTGTTGCATATGTATCTCAAAAGCTATGTCTTCTTACTAAATAGTCTGATGCTTGTGTTTGTGGAAGTTTACTGTGGAGGCTCAGTAGCTGGATTACATGACAACTGAATTAGAAACTAAGATAATAAAGGAATAGCTTTGAGTAGAAATATGTAATTATAGTGTGAACAATTTCTTGTTTGAAAGAATGATTTTGGTCGAACTGTACCATCCATTCTATCGCGCAGACTGTTTGTTTGCCTTGATGTAGTTATGCCGAACAGGTATGATATCATATCATATCATAAAAGCTCATCTGTTGATGTTTGTTTCTTTTTTGATTCTTTGTAAAGGTGTTGTCGAAGTACAGTACTGATAAATTTTTTTGTATAAGTATGATCAATTAATTCACATGTTAACTGAATGAATATTGTTTTCATGCTTGTTTCGTATGGACTCAATTGATTTTGGTTGAAGTGCTCTTATTTTTTCTTTGTTTTACATCTTTTCTTTGTGTACTCTTGTTACCTCAGGAAGCATATTCAGATATGGATCCTGACGACAGTCTAAGTGAAGATCCTTGGATAAAGTCTTCTTCGTCTGGCAACGAATTGCTGAAAATTATGCCCTCAGATAACCATTCATTTACCAATTTAAATCTGCATGAGCAGAAGTGGGAAGGTTCCTCTTATTTGGATCAAGAAATCAGGATTGAGCAACAGTTTACTGGATTTGCTAAACCAAAACACACATCTGAGATGGATCAACAGGGGAATCAAAATCATGATACGACCAGAATACATGACTGGGATCCAAGAGCTTTGCTAAACAACCTTTCGTTTCTCGAACAAAAGATTCATCAGCTCCAGGAGCTGGTGCATTTGATTGTTGGGCGGAGAGGTCAAGATGAGGTTCAGGGAAATGACCTTATAGTTCAGCAA</genome_strand>
        <mrna_strand>TTCCCAATAGTAAGAAAGAAGAACCATTGGCTGACCTTCAATCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCATATTCAGATATGGATCCTGACGACAGTCTAAGTGAAGATCCTTGGATAAAGTCTTCTTCGTCTGGCAACGAATTGCTGAAAATTATGCCCTCAGATAACCATTCATTTACCAATTTAAATCTGCATGAGCAGAAGTGGGAAGGTTCCTCTTATTTGGATCAAGAAATCAGGATTGAGCAACAGTTTACTGGATTTGCTAAACCAAAACACACATCTGAGATGGATCAACAGGGGAATCAAAATCATGATACGACCAGAATACATGACTGGGATCCAAGAGCTTTGCTAAACAACCTTTCGTTTCTCGAACAAAAGATTCATCAGCTCCAGGAGCTGGTGCATTTGATTGTTGGGCGGAGAGGTCAAGATGAGGTTCAAGGAAATGACCTTATAGTTCAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308921" ref_strand="+" ref_description="SGN-E308921 [cLEY-23-P10]">
      <seq>aaagaagaaccattggctgaccttcaatctggaagcatattcagatatggatcctgacgacagtctaagtgaagatccttggataacgtcttcttcctctggcatcgaattgctgaaaattatgccataaaataaccattcatttaccaatttaaatctgcatgagcagaattgggaaggttcctcttatttggatcaagaaatcacgatcgagcaccagtttactggatttgctaaaccaaaacacacatctgagatggatcaacaggggaatcaaaatcatgatacgaccagaatacatgactgggatccaagagctttgctaaacaacctttcgtttctcgaacaaaagattcatcagctccaggaactggtgcatttgattgttgggcggagaggtcaacatgaggttcagggaaatgacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="78015" stop="75998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77715" g_stop="77685" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77684" i_stop="76693" i_length="992">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76692" g_stop="76298" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="426" r_length="395" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E308921" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77715" e_stop="77685"/>
          <exon e_start="76692" e_stop="76298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGAACCATTGGCTGACCTTCAATCTGGTGAGTTTTCATTATTTCTATCCTAACACTTTGTCTCTATATGGTGTGTGTATCTCTGATGACTTCTTGCTGAAAAGTTTACAACTTTTAAACTGTTTTTTCCTTTTTGTCTTTGATGAGTTGACAATAGGATGTTTTATAGAAAAAGATTGAATCTTTGATGTGCAACCTGTATTGGGGTTTTCTCAGATTTTGATGAGATTGAGATCTCCAAATTTTTAAAGAAAATTATTTTGTGGTTGAGTTTCTTTTGGGGTTGTTGGTGAAGGTGTGGATGGTCAAAAAAGACTCCCAAAATGAAATTTGGGTTTCTTTTCTTGATTTTTCTTCTGGGGATGGATTGACCTGCATAAAGGGAAAGGAAGATGAGGGGGTGGGGGCGTTGACCTAGAATTGAACCAAAGTTCCTACCAATCTTTAAACCTGAAAATCACTGGAATTTAGGTTTTTCTAAGTAAAATTTATGTGGTGTGGCCTTTTGTGTTGCATATGTATCTCAAAAGCTATGTCTTCTTACTAAATAGTCTGATGCTTGTGTTTGTGGAAGTTTACTGTGGAGGCTCAGTAGCTGGATTACATGACAACTGAATTAGAAACTAAGATAATAAAGGAATAGCTTTGAGTAGAAATATGTAATTATAGTGTGAACAATTTCTTGTTTGAAAGAATGATTTTGGTCGAACTGTACCATCCATTCTATCGCGCAGACTGTTTGTTTGCCTTGATGTAGTTATGCCGAACAGGTATGATATCATATCATATCATAAAAGCTCATCTGTTGATGTTTGTTTCTTTTTTGATTCTTTGTAAAGGTGTTGTCGAAGTACAGTACTGATAAATTTTTTTGTATAAGTATGATCAATTAATTCACATGTTAACTGAATGAATATTGTTTTCATGCTTGTTTCGTATGGACTCAATTGATTTTGGTTGAAGTGCTCTTATTTTTTCTTTGTTTTACATCTTTTCTTTGTGTACTCTTGTTACCTCAGGAAGCATATTCAGATATGGATCCTGACGACAGTCTAAGTGAAGATCCTTGGATAAAGTCTTCTTCGTCTGGCAACGAATTGCTGAAAATTATGCCCTCAGATAACCATTCATTTACCAATTTAAATCTGCATGAGCAGAAGTGGGAAGGTTCCTCTTATTTGGATCAAGAAATCAGGATTGAGCAACAGTTTACTGGATTTGCTAAACCAAAACACACATCTGAGATGGATCAACAGGGGAATCAAAATCATGATACGACCAGAATACATGACTGGGATCCAAGAGCTTTGCTAAACAACCTTTCGTTTCTCGAACAAAAGATTCATCAGCTCCAGGAGCTGGTGCATTTGATTGTTGGGCGGAGAGGTCAAGATGAGGTTCAGGGAAATGACCT</genome_strand>
        <mrna_strand>AAAGAAGAACCATTGGCTGACCTTCAATCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCATATTCAGATATGGATCCTGACGACAGTCTAAGTGAAGATCCTTGGATAACGTCTTCTTCCTCTGGCATCGAATTGCTGAAAATTATGCCATAAAATAACCATTCATTTACCAATTTAAATCTGCATGAGCAGAATTGGGAAGGTTCCTCTTATTTGGATCAAGAAATCACGATCGAGCACCAGTTTACTGGATTTGCTAAACCAAAACACACATCTGAGATGGATCAACAGGGGAATCAAAATCATGATACGACCAGAATACATGACTGGGATCCAAGAGCTTTGCTAAACAACCTTTCGTTTCTCGAACAAAAGATTCATCAGCTCCAGGAACTGGTGCATTTGATTGTTGGGCGGAGAGGTCAACATGAGGTTCAGGGAAATGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="+" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="84809" stop="85967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85109" g_stop="85667" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="+" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85109" e_stop="85667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAAGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTATGATGATAGTATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAACGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGTTCCAGTTTTCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCCCTACCATGACCACCTCTACCTCTAACATTTGGAGGTTTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCATATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGCGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCGCC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392027" ref_strand="+" ref_description="SGN-E392027 [TUS-24-O2](-)">
      <seq>cagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggactggatcttcttcttcaagtcttgatgccttgaacttccggcatggactagcttcttatgtatttttagcttttagactactcttagtttagtcatttgatcgtagatgttcttgtggtgatgacttccagattttggggaataatagatgttgaattttagaagttaatgaattggtctgtatttaatgagtttaagtcttccacattactttctgttgatattatattgaaatgttaaggttagattggttggttcgctcacataggagggtaagtgtgggtgccagtcgcaacccggttttggtcgtgacaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacgagtctagtagagtcttaaggaacggtagggggatgcctttacttttccttgagaggctataagacttttggaaaattccattctttcttctttcgtgctattacttgggtccaattggtatctaggtgatacaaattggtatctgaccatcttcactctatttcgcagatggttagaactagagcaacgactacgccagcatcaacaccagcaccggcgggacagggtgcgactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="87653" stop="86340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87353" g_stop="86640" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E392027" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87353" e_stop="86640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAAGCGTGCCGTCGTCTTCGACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTCGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTA-TTTTAGCTTCTTAGAATACTCTTAGTTTAGTGATTTGATTATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATGATAAGTTTTGAGTTATAGAAGTTGA-CTATTGATTTTTA-TTAATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATATTATATTGAAATGTTAAGGTTTAGATTGATTGGTTTGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCACGGCCCGGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAAGAACGGTAGAGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCATTCTTTCTTTCGTGCTACTACTTGGGTCC-ATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCACCAACATCAGCACCGGCGGGACAGGGTGCGTCTGAGCCAGCCAATGGGGCTGTAG</genome_strand>
        <mrna_strand>CAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTT-TTAGACTACTCTTAGTTTAGTCATTTGATCGTAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTGTATTTAATGAGTTTAAGTCTTCCACATTACTTTCTGTTGATATTATATTGAAATGTTAAGG-TTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGG-TTTTGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTTGGAAAATTCCATTC--T--TTC-TTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCATCAACACCAGCACCGGCGGGACAGGGTGCGACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216150" ref_strand="+" ref_description="SGN-E216150 [cLEL-13-M23](-)">
      <seq>agtaactcaagccagtcctactacatcggaaattcagggtgagctaatgcttctaggtttgactggatcttcttcttcaagtcttgatgccttgaacttccggcatggactagcttcgtatgtatttttagcttcttagaatactcttagtttagtaattttatgatagaggctctggtgatgatgacttccagattttggggaatgataagttttgagttatacaagttgattattgatttttattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="87623" stop="86776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87323" g_stop="87077" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="249" polyA_stop="265"/>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E216150" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87323" e_stop="87077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTCGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTA-TTTTAGCTTCTTAGAATACTCTTAGTTTAGTGATTTGATTATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATGATAAGTTTTGAGTTATAGAAGTTGACTATTGATTTTTATTA</genome_strand>
        <mrna_strand>AGTAACTCAAGCCAGTCCTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGGTTTGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCGTATGTATTTTTAGCTTCTTAGAATACTCTTAGTTTAGTAATTTTATGATAGAGGCTCTGGTGATGATGACTTCCAGATTTTGGGGAATGATAAGTTTTGAGTTATACAAGTTGATTATTGATTTTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="87895" stop="87059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87595" g_stop="87359" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87595" e_stop="87359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACCGAATCCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTAATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACTGTTTTCTATTTTGAGTTGGCCGATGATACCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTGTTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTATCTTCTTG-TTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242359" ref_strand="+" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="88306" stop="87151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88006" g_stop="87733" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87732" i_stop="87695" i_length="38">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87694" g_stop="87451" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="515" r_length="244" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-E242359" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88006" e_stop="87733"/>
          <exon e_start="87694" e_stop="87451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAATGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTGCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGGATCGGGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTTCGACACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAAGGAATCTTGAAAGATGTTAATATATTCAATTTAATGAACCGAATCCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTAATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATAT--GGATCGG-GTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCAC......................................GTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>61</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1687" PGL_stop="2178"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1687" e_stop="2178"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1687" e_stop="2178" e_length="492"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1687" stop="2178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338553" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTGTCCTTGCAGTGGTGAGATCGAACCACGTCGCTAGCAAGGACATGGGCATCGATCTTGAGTGTTCATCTTTTTCCGATTAAGTCCAGATTTTTCAGGAAAAGGATCTTATCCAGAAGAGGGAAGAATTTTTGAATGGTGATGGAAATTCTCAGTTCTACCCTTTTCTCCTCCTTTCCAAACCCTAATTTCCAGCTATTTAAGCGGAGATTTCTTTCATTGTGAAAGAGAGAAGGAGAGGGGAAGAAAAAAGGGTGGGGTTTCTTAAAGATTTTCAGGGAAAACAGAGAAAATTACATAAAAAAAAAAGAAATTTCTGAAAGGAATTATAACTAGATATATAGCGAAAAGAAATCGAAAGATCTTAGAGAAATTAGTGGGGAGTCGAAGCTTTGGTTCAGAGCCTTCACTTAGTCCCTCTGCTTGCGAAAATCTTTTGGAGTTGTCGGAAGTCGTCTCAAGCTTGCTACTGTCCCATTTCGCTGCACTC</gDNA_template>
            <first_frame> F  C  P  C  S  G  E  I  E  P  R  R  *  Q  G  H  G  H  R  S  *  V  F  I  F  F  R  L  S  P  D  F  S  G  K  G  S  Y  P  E  E  G  R  I  F  E  W  *  W  K  F  S  V  L  P  F  S  P  P  F  Q  T  L  I  S  S  Y  L  S  G  D  F  F  H  C  E  R  E  K  E  R  G  R  K  K  G  G  V  S  *  R  F  S  G  K  T  E  K  I  T  *  K  K  K  K  F  L  K  G  I  I  T  R  Y  I  A  K  R  N  R  K  I  L  E  K  L  V  G  S  R  S  F  G  S  E  P  S  L  S  P  S  A  C  E  N  L  L  E  L  S  E  V  V  S  S  L  L  L  S  H  F  A  A  L </first_frame>
            <second_frame>  F  V  L  A  V  V  R  S  N  H  V  A  S  K  D  M  G  I  D  L  E  C  S  S  F  S  D  *  V  Q  I  F  Q  E  K  D  L  I  Q  K  R  E  E  F  L  N  G  D  G  N  S  Q  F  Y  P  F  L  L  L  S  K  P  *  F  P  A  I  *  A  E  I  S  F  I  V  K  E  R  R  R  G  E  E  K  R  V  G  F  L  K  D  F  Q  G  K  Q  R  K  L  H  K  K  K  R  N  F  *  K  E  L  *  L  D  I  *  R  K  E  I  E  R  S  *  R  N  *  W  G  V  E  A  L  V  Q  S  L  H  L  V  P  L  L  A  K  I  F  W  S  C  R  K  S  S  Q  A  C  Y  C  P  I  S  L  H   </second_frame>
            <third_frame>   L  S  L  Q  W  *  D  R  T  T  S  L  A  R  T  W  A  S  I  L  S  V  H  L  F  P  I  K  S  R  F  F  R  K  R  I  L  S  R  R  G  K  N  F  *  M  V  M  E  I  L  S  S  T  L  F  S  S  F  P  N  P  N  F  Q  L  F  K  R  R  F  L  S  L  *  K  R  E  G  E  G  K  K  K  G  W  G  F  L  K  I  F  R  E  N  R  E  N  Y  I  K  K  K  E  I  S  E  R  N  Y  N  *  I  Y  S  E  K  K  S  K  D  L  R  E  I  S  G  E  S  K  L  W  F  R  A  F  T  *  S  L  C  L  R  K  S  F  G  V  V  G  S  R  L  K  L  A  T  V  P  F  R  C  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0064J13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="3543" PGL_stop="4256"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3543" e_stop="4256"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="3543" e_stop="4256" e_length="714"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3543" stop="4256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333016" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGTTTATACCTTAAAGTTTCTCTACTTTATTTTGAATCCAGCTCAGCATAAACTGGTTTCAACCATCTGACTCTTCTATAAAGCGAAGTGCCATTCAAAGACTGATAAGTTATCTCCTCAAGAATCTCTCTTGAAAACTCTCCCTCGTGTGAGTAATAGTTGCTATCCTGAAGGTGGTCTCAAGACAAGCAATGATGATGAAAATGCTTTGGAATTAGTGTCTGATCTACTTGGTTCATCAAAGAGTTCGGAGAATTTACCGCGTTCTCAAGCGATTGAGATAAACCCATTTCCTACTTCCTCTCTGAGGGGTGTTTGTGCTAATCATTCAGGCTTTGGTTTAAATGATCCTTTTAGTCTGAATCTGATGAAGAACCTTTGCTTGACATGGGTTTTGGTCACACAGCATCTTTTAACGAATTCAGGAGTTCATTACCGCCAATACAGGTATGTCGTTATTTATTCTCAATAAATAAAGGTATGTTGTATATATCGCCAACTAGGTTCAATAGTTCGCAAATTGGTAGAGACACAAACATGAAGATAAGATAAATTTCAACAAACTAATTTCACTGTCTTCTAGCAGCAGTATATTGAAAATTAATGTAATAACATAAAGTTTGCTGGACACTCCATTTAGACTTAATTTCCTTTTGGCCAATTGGGAAGATTTGACACTTATTATGTACTAATATTTTGTAAAAATGCTTTCT</gDNA_template>
            <first_frame> E  F  I  P  *  S  F  S  T  L  F  *  I  Q  L  S  I  N  W  F  Q  P  S  D  S  S  I  K  R  S  A  I  Q  R  L  I  S  Y  L  L  K  N  L  S  *  K  L  S  L  V  *  V  I  V  A  I  L  K  V  V  S  R  Q  A  M  M  M  K  M  L  W  N  *  C  L  I  Y  L  V  H  Q  R  V  R  R  I  Y  R  V  L  K  R  L  R  *  T  H  F  L  L  P  L  *  G  V  F  V  L  I  I  Q  A  L  V  *  M  I  L  L  V  *  I  *  *  R  T  F  A  *  H  G  F  W  S  H  S  I  F  *  R  I  Q  E  F  I  T  A  N  T  G  M  S  L  F  I  L  N  K  *  R  Y  V  V  Y  I  A  N  *  V  Q  *  F  A  N  W  *  R  H  K  H  E  D  K  I  N  F  N  K  L  I  S  L  S  S  S  S  S  I  L  K  I  N  V  I  T  *  S  L  L  D  T  P  F  R  L  N  F  L  L  A  N  W  E  D  L  T  L  I  M  Y  *  Y  F  V  K  M  L  S </first_frame>
            <second_frame>  S  L  Y  L  K  V  S  L  L  Y  F  E  S  S  S  A  *  T  G  F  N  H  L  T  L  L  *  S  E  V  P  F  K  D  *  *  V  I  S  S  R  I  S  L  E  N  S  P  S  C  E  *  *  L  L  S  *  R  W  S  Q  D  K  Q  *  *  *  K  C  F  G  I  S  V  *  S  T  W  F  I  K  E  F  G  E  F  T  A  F  S  S  D  *  D  K  P  I  S  Y  F  L  S  E  G  C  L  C  *  S  F  R  L  W  F  K  *  S  F  *  S  E  S  D  E  E  P  L  L  D  M  G  F  G  H  T  A  S  F  N  E  F  R  S  S  L  P  P  I  Q  V  C  R  Y  L  F  S  I  N  K  G  M  L  Y  I  S  P  T  R  F  N  S  S  Q  I  G  R  D  T  N  M  K  I  R  *  I  S  T  N  *  F  H  C  L  L  A  A  V  Y  *  K  L  M  *  *  H  K  V  C  W  T  L  H  L  D  L  I  S  F  W  P  I  G  K  I  *  H  L  L  C  T  N  I  L  *  K  C  F   </second_frame>
            <third_frame>   V  Y  T  L  K  F  L  Y  F  I  L  N  P  A  Q  H  K  L  V  S  T  I  *  L  F  Y  K  A  K  C  H  S  K  T  D  K  L  S  P  Q  E  S  L  L  K  T  L  P  R  V  S  N  S  C  Y  P  E  G  G  L  K  T  S  N  D  D  E  N  A  L  E  L  V  S  D  L  L  G  S  S  K  S  S  E  N  L  P  R  S  Q  A  I  E  I  N  P  F  P  T  S  S  L  R  G  V  C  A  N  H  S  G  F  G  L  N  D  P  F  S  L  N  L  M  K  N  L  C  L  T  W  V  L  V  T  Q  H  L  L  T  N  S  G  V  H  Y  R  Q  Y  R  Y  V  V  I  Y  S  Q  *  I  K  V  C  C  I  Y  R  Q  L  G  S  I  V  R  K  L  V  E  T  Q  T  *  R  *  D  K  F  Q  Q  T  N  F  T  V  F  *  Q  Q  Y  I  E  N  *  C  N  N  I  K  F  A  G  H  S  I  *  T  *  F  P  F  G  Q  L  G  R  F  D  T  Y  Y  V  L  I  F  C  K  N  A  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0064J13.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3614" stop="4015"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFYKAKCHSKTDKLSPQESLLKTLPRVSNSCYPEGGLKTSNDDENALELVSDLLGSSKSSENLPRSQAIEINPFPTSSLRGVCANHSGFGLNDPFSLNLMKNLCLTWVLVTQHLLTNSGVHYRQYRYVVIYSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="12752" PGL_stop="6417"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12752" e_stop="12460"/>
            <exon e_start="11368" e_stop="11153"/>
            <exon e_start="9438" e_stop="9311"/>
            <exon e_start="9040" e_stop="8921"/>
            <exon e_start="8753" e_stop="8664"/>
            <exon e_start="8054" e_stop="7968"/>
            <exon e_start="7846" e_stop="7767"/>
            <exon e_start="6917" e_stop="6644"/>
            <exon e_start="6435" e_stop="6417"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.998" e_score="0.997"/>
          <exon-intron don_prob="0.998" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.104" e_score="1.000"/>
          <exon-only e_score="0.579"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="12752" e_stop="12460" e_length="293"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.998">
            <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11368" e_stop="11153" e_length="216"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.964">
            <gDNA_intron_boundary i_start="11152" i_stop="9439" i_length="1714"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9438" e_stop="9311" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.988">
            <gDNA_intron_boundary i_start="9310" i_stop="9041" i_length="270"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="9040" e_stop="8921" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.986">
            <gDNA_intron_boundary i_start="8920" i_stop="8754" i_length="167"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8753" e_stop="8664" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8663" i_stop="8055" i_length="609"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="8054" e_stop="7968" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="7967" i_stop="7847" i_length="121"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="7846" e_stop="7767" e_length="80"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="7766" i_stop="6918" i_length="849"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="6917" e_stop="6644" e_length="274"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.104">
            <gDNA_intron_boundary i_start="6643" i_stop="6436" i_length="208"/>
          </intron>
          <exon e_serial="9" e_score="0.579">
            <gDNA_exon_boundary e_start="6435" e_stop="6417" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12752" stop="12460"/>
              <exon start="11368" stop="11195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12745" stop="12460"/>
              <exon start="11368" stop="11153"/>
              <exon start="9438" stop="9311"/>
              <exon start="9040" stop="8921"/>
              <exon start="8753" stop="8664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12743" stop="12460"/>
              <exon start="11368" stop="11153"/>
              <exon start="9438" stop="9311"/>
              <exon start="9040" stop="9017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12743" stop="12460"/>
              <exon start="11368" stop="11153"/>
              <exon start="9438" stop="9313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12741" stop="12460"/>
              <exon start="11368" stop="11153"/>
              <exon start="9438" stop="9311"/>
              <exon start="9040" stop="8999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12738" stop="12460"/>
              <exon start="11368" stop="11153"/>
              <exon start="9438" stop="9323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12731" stop="12460"/>
              <exon start="11368" stop="11153"/>
              <exon start="9438" stop="9311"/>
              <exon start="9040" stop="8921"/>
              <exon start="8753" stop="8714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12731" stop="12460"/>
              <exon start="11368" stop="11153"/>
              <exon start="9438" stop="9324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12731" stop="12460"/>
              <exon start="11368" stop="11153"/>
              <exon start="9438" stop="9346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12731" stop="12460"/>
              <exon start="11368" stop="11153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12731" stop="12460"/>
              <exon start="11368" stop="11180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12725" stop="12460"/>
              <exon start="11368" stop="11153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12725" stop="12460"/>
              <exon start="11368" stop="11172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12711" stop="12489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12708" stop="12460"/>
              <exon start="11368" stop="11153"/>
              <exon start="9438" stop="9311"/>
              <exon start="9040" stop="8921"/>
              <exon start="8753" stop="8664"/>
              <exon start="8054" stop="8009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12708" stop="12460"/>
              <exon start="11368" stop="11153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12708" stop="12460"/>
              <exon start="11368" stop="11195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12707" stop="12460"/>
              <exon start="11368" stop="11153"/>
              <exon start="9438" stop="9311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12707" stop="12460"/>
              <exon start="11368" stop="11238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280193" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12706" stop="12460"/>
              <exon start="11368" stop="11153"/>
              <exon start="9438" stop="9311"/>
              <exon start="9040" stop="8921"/>
              <exon start="8753" stop="8664"/>
              <exon start="8054" stop="7999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12705" stop="12460"/>
              <exon start="11368" stop="11162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12704" stop="12460"/>
              <exon start="11368" stop="11153"/>
              <exon start="9438" stop="9311"/>
              <exon start="9040" stop="8921"/>
              <exon start="8753" stop="8664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12702" stop="12460"/>
              <exon start="11368" stop="11179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12698" stop="12460"/>
              <exon start="11368" stop="11153"/>
              <exon start="9438" stop="9318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12698" stop="12460"/>
              <exon start="11368" stop="11153"/>
              <exon start="9438" stop="9414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12689" stop="12460"/>
              <exon start="11368" stop="11153"/>
              <exon start="9438" stop="9311"/>
              <exon start="9040" stop="8921"/>
              <exon start="8753" stop="8704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12686" stop="12460"/>
              <exon start="11368" stop="11153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12668" stop="12460"/>
              <exon start="11368" stop="11153"/>
              <exon start="9438" stop="9311"/>
              <exon start="9040" stop="8921"/>
              <exon start="8753" stop="8737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12623" stop="12460"/>
              <exon start="11368" stop="11153"/>
              <exon start="9438" stop="9311"/>
              <exon start="9040" stop="8921"/>
              <exon start="8753" stop="8664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12607" stop="12460"/>
              <exon start="11368" stop="11153"/>
              <exon start="9438" stop="9311"/>
              <exon start="9040" stop="8921"/>
              <exon start="8753" stop="8664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374651" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11368" stop="11172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11327" stop="11153"/>
              <exon start="9438" stop="9311"/>
              <exon start="9040" stop="8921"/>
              <exon start="8753" stop="8664"/>
              <exon start="8054" stop="7968"/>
              <exon start="7846" stop="7767"/>
              <exon start="6917" stop="6873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9414" stop="9311"/>
              <exon start="9040" stop="8921"/>
              <exon start="8753" stop="8664"/>
              <exon start="8054" stop="7968"/>
              <exon start="7846" stop="7767"/>
              <exon start="6917" stop="6644"/>
              <exon start="6435" stop="6417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9362" stop="9311"/>
              <exon start="9040" stop="8921"/>
              <exon start="8753" stop="8664"/>
              <exon start="8054" stop="7968"/>
              <exon start="7846" stop="7767"/>
              <exon start="6917" stop="6656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419172" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9358" stop="9311"/>
              <exon start="9040" stop="8921"/>
              <exon start="8753" stop="8664"/>
              <exon start="8054" stop="7968"/>
              <exon start="7846" stop="7767"/>
              <exon start="6917" stop="6648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374652" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8741" stop="8664"/>
              <exon start="8054" stop="7968"/>
              <exon start="7846" stop="7767"/>
              <exon start="6917" stop="6654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8033" stop="7968"/>
              <exon start="7846" stop="7767"/>
              <exon start="6917" stop="6648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204815" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8021" stop="7968"/>
              <exon start="7846" stop="7767"/>
              <exon start="6917" stop="6648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378148" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTGCAACCGTCTTCGTCTCTCTCCATCTTTCCTCAGCGGCGAACTTACTCCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTC : GGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAAC : AAATGAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAG : ACTGGAAAGGTACTGAAGGAGTCTGACAAAGAAATCGGTCATAAAAAGGGTATTACATCGCTACAAAAATCAGTGGATGGTTCGCACTTCATTACTGGTTCTCTTGATAAATCTGCAAAG : CTCTGGGACATCAGAAGTTTGACACTTATCAAGAACTATACGACCGAACGACCCGTGAATGCTGTCACAATGTCGCCGCTTCTTAATCAT : GTGGTTCTGGGAGGTGGTCAAGACGCTTCAGCTGTCACCACTACTGACCATCGTGCTGGAAAGTTTGAGGCCAAGTTCTATGACAAG : ATTCTTACTGAAGAAATAGGAGGTGTCAAAGGGCATTTTGGACCAATAAATGCTTTGGCTTTCAATCCTGATGGGAAAAG : TTTTGCAAGTGGTGGTGAAGATGGATATGTGAGATTGCATCATTTTGACCAGGATTACTTCAACATCAGGATTTAGATTTTGATAGGATCAGGTTTTGCAAGTTTTGTTACTTTTCGGTGTTCAGTAGAAAAGGAGGATAATTATGTCTTTCCTGTTATCTCCATTGAATTTTTTGTATGCTTTTATTGTTGCAACCTATGTTCATCGCACGAGAGGAACTAACATTTTATTTCTGGACAAGTTGAGCAAAACATATTTACTGGATATTTTTAG : GTAACATATAAAGTAGAAA</gDNA_template>
            <first_frame> P  A  T  V  F  V  S  L  H  L  S  S  A  A  N  L  L  R  R  R  T  T  I  S  L  R  E  S  L  R  R  P  T  T  N  N  D  E  A  N  I  D  E  G  P  *  K  A  V  N  F  S  K  V  Q  Q  R  W  R  S  A  L  L  L  R  *  G  P  Y  P  Y  R  L  V  C  R  *  R  R  A  P  R  H  L  P  W  P  *  R  C  R  L  V  L  *  R  F  S :   G  F  V  Q  A  N  N  W  K  C  G  S  D  C  N  V  V  G  C  P  N  W  C  P  A  A  H  V  H  L  *  L  P  C  *  V  C  *  F  F  S  W  R  *  T  R  S  D  H  H  *  S  F  Y  G  T  D  I  C  Y  P  Y  Q  K  Y  Q  Q  R  S  Q  *  T :   N  E  *  V  G  A  R  L  K  G  S  P  G  K  N  Q  Q  S  C  V  G  T  P  E  *  N  N  Y  K  C  W  *  R  C  C  N  T  Y  L  G  C  *   : D  W  K  G  T  E  G  V  *  Q  R  N  R  S  *  K  G  Y  Y  I  A  T  K  I  S  G  W  F  A  L  H  Y  W  F  S  *  *  I  C  K   : A  L  G  H  Q  K  F  D  T  Y  Q  E  L  Y  D  R  T  T  R  E  C  C  H  N  V  A  A  S  *  S   : C  G  S  G  R  W  S  R  R  F  S  C  H  H  Y  *  P  S  C  W  K  V  *  G  Q  V  L  *  Q   : D  S  Y  *  R  N  R  R  C  Q  R  A  F  W  T  N  K  C  F  G  F  Q  S  *  W  E  K  :  F  C  K  W  W  *  R  W  I  C  E  I  A  S  F  *  P  G  L  L  Q  H  Q  D  L  D  F  D  R  I  R  F  C  K  F  C  Y  F  S  V  F  S  R  K  G  G  *  L  C  L  S  C  Y  L  H  *  I  F  C  M  L  L  L  L  Q  P  M  F  I  A  R  E  E  L  T  F  Y  F  W  T  S  *  A  K  H  I  Y  W  I  F  L   : G  N  I  *  S  R   </first_frame>
            <second_frame>  L  Q  P  S  S  S  L  S  I  F  P  Q  R  R  T  Y  S  G  D  E  Q  Q  S  H  *  E  N  H  S  G  D  R  L  Q  T  T  M  R  P  I  L  M  K  G  H  E  R  P  L  T  F  L  K  Y  N  R  D  G  D  L  L  F  S  C  A  K  D  H  T  P  T  V  W  F  A  D  N  G  E  R  L  G  T  Y  R  G  H  N  G  A  V  W  C  C  D  V  S   : R  D  S  S  R  L  I  T  G  S  A  D  Q  T  A  M  L  W  D  V  Q  T  G  A  Q  L  H  T  F  T  F  D  S  P  A  R  S  V  D  F  S  V  G  D  K  L  A  V  I  T  T  D  P  F  M  G  L  T  S  A  I  H  I  K  N  I  S  K  D  P  S  E   : Q  M  S  E  S  V  L  V  L  K  G  P  Q  G  R  I  N  R  A  V  W  G  P  L  N  K  T  I  I  S  A  G  E  D  A  V  I  R  I  W  D  A  E  :  T  G  K  V  L  K  E  S  D  K  E  I  G  H  K  K  G  I  T  S  L  Q  K  S  V  D  G  S  H  F  I  T  G  S  L  D  K  S  A  K  :  L  W  D  I  R  S  L  T  L  I  K  N  Y  T  T  E  R  P  V  N  A  V  T  M  S  P  L  L  N  H  :  V  V  L  G  G  G  Q  D  A  S  A  V  T  T  T  D  H  R  A  G  K  F  E  A  K  F  Y  D  K  :  I  L  T  E  E  I  G  G  V  K  G  H  F  G  P  I  N  A  L  A  F  N  P  D  G  K  S :   F  A  S  G  G  E  D  G  Y  V  R  L  H  H  F  D  Q  D  Y  F  N  I  R  I  *  I  L  I  G  S  G  F  A  S  F  V  T  F  R  C  S  V  E  K  E  D  N  Y  V  F  P  V  I  S  I  E  F  F  V  C  F  Y  C  C  N  L  C  S  S  H  E  R  N  *  H  F  I  S  G  Q  V  E  Q  N  I  F  T  G  Y  F  *  :  V  T  Y  K  V  E  </second_frame>
            <third_frame>   C  N  R  L  R  L  S  P  S  F  L  S  G  E  L  T  P  A  T  N  N  N  L  T  E  R  I  T  P  A  T  D  Y  K  Q  R  *  G  Q  Y  *  *  R  A  M  K  G  R  *  L  F  *  S  T  T  E  M  E  I  C  S  S  L  A  L  R  T  I  P  L  P  F  G  L  P  I  T  A  S  A  S  A  L  T  V  A  I  T  V  P  F  G  A  V  T  F  L  :  G  I  R  P  G  *  *  L  E  V  R  I  R  L  Q  C  C  G  M  S  K  L  V  P  S  C  T  R  S  P  L  T  P  L  L  G  L  L  I  F  Q  L  A  I  N  S  Q  *  S  P  L  I  L  L  W  D  *  H  L  L  S  I  S  K  I  S  A  K  I  P  V  N  :  K  *  V  S  R  C  S  S  *  R  V  P  R  E  E  S  T  E  L  C  G  D  P  *  I  K  Q  L  *  V  L  V  K  M  L  *  Y  V  S  G  M  L  R :   L  E  R  Y  *  R  S  L  T  K  K  S  V  I  K  R  V  L  H  R  Y  K  N  Q  W  M  V  R  T  S  L  L  V  L  L  I  N  L  Q  S :   S  G  T  S  E  V  *  H  L  S  R  T  I  R  P  N  D  P  *  M  L  S  Q  C  R  R  F  L  I  M :   W  F  W  E  V  V  K  T  L  Q  L  S  P  L  L  T  I  V  L  E  S  L  R  P  S  S  M  T  R :   F  L  L  K  K  *  E  V  S  K  G  I  L  D  Q  *  M  L  W  L  S  I  L  M  G  K   : V  L  Q  V  V  V  K  M  D  M  *  D  C  I  I  L  T  R  I  T  S  T  S  G  F  R  F  *  *  D  Q  V  L  Q  V  L  L  L  F  G  V  Q  *  K  R  R  I  I  M  S  F  L  L  S  P  L  N  F  L  Y  A  F  I  V  A  T  Y  V  H  R  T  R  G  T  N  I  L  F  L  D  K  L  S  K  T  Y  L  L  D  I  F  R :   *  H  I  K  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0064J13.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12676" stop="12460"/>
                    <exon start="11368" stop="11153"/>
                    <exon start="9438" stop="9311"/>
                    <exon start="9040" stop="8921"/>
                    <exon start="8753" stop="8664"/>
                    <exon start="8054" stop="7968"/>
                    <exon start="7846" stop="7767"/>
                    <exon start="6917" stop="6842"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENHSGDRLQTTMRPILMKGHERPLTFLKYNRDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSSRLITGSADQTAMLWDVQTGAQLHTFTFDSPARSVDFSVGDKLAVITTDPFMGLTSAIHIKNISKDPSEQMSESVLVLKGPQGRINRAVWGPLNKTIISAGEDAVIRIWDAETGKVLKESDKEIGHKKGITSLQKSVDGSHFITGSLDKSAKLWDIRSLTLIKNYTTERPVNAVTMSPLLNHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILTEEIGGVKGHFGPINALAFNPDGKSFASGGEDGYVRLHHFDQDYFNIRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="12752" e_stop="12460"/>
            <exon e_start="11368" e_stop="11153"/>
            <exon e_start="10890" e_stop="10886"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.998" e_score="0.971"/>
          <exon-intron don_prob="0.998" acc_prob="0.791" e_score="1.000"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="12752" e_stop="12460" e_length="293"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.998">
            <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11368" e_stop="11153" e_length="216"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.791">
            <gDNA_intron_boundary i_start="11152" i_stop="10891" i_length="262"/>
          </intron>
          <exon e_serial="3" e_score="0.800">
            <gDNA_exon_boundary e_start="10890" e_stop="10886" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12752" stop="12460"/>
              <exon start="11368" stop="11195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12731" stop="12460"/>
              <exon start="11368" stop="11153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12731" stop="12460"/>
              <exon start="11368" stop="11180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12725" stop="12460"/>
              <exon start="11368" stop="11153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12725" stop="12460"/>
              <exon start="11368" stop="11172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12711" stop="12489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12708" stop="12460"/>
              <exon start="11368" stop="11153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12708" stop="12460"/>
              <exon start="11368" stop="11195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12707" stop="12460"/>
              <exon start="11368" stop="11238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280193" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12705" stop="12460"/>
              <exon start="11368" stop="11162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12702" stop="12460"/>
              <exon start="11368" stop="11179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12686" stop="12460"/>
              <exon start="11368" stop="11153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12608" stop="12460"/>
              <exon start="11368" stop="11153"/>
              <exon start="10890" stop="10886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11368" stop="11172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437293" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTGCAACCGTCTTCGTCTCTCTCCATCTTTCCTCAGCGGCGAACTTACTCCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTC : GGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAAC : AGATG</gDNA_template>
            <first_frame> P  A  T  V  F  V  S  L  H  L  S  S  A  A  N  L  L  R  R  R  T  T  I  S  L  R  E  S  L  R  R  P  T  T  N  N  D  E  A  N  I  D  E  G  P  *  K  A  V  N  F  S  K  V  Q  Q  R  W  R  S  A  L  L  L  R  *  G  P  Y  P  Y  R  L  V  C  R  *  R  R  A  P  R  H  L  P  W  P  *  R  C  R  L  V  L  *  R  F  S :   G  F  V  Q  A  N  N  W  K  C  G  S  D  C  N  V  V  G  C  P  N  W  C  P  A  A  H  V  H  L  *  L  P  C  *  V  C  *  F  F  S  W  R  *  T  R  S  D  H  H  *  S  F  Y  G  T  D  I  C  Y  P  Y  Q  K  Y  Q  Q  R  S  Q  *  T :   D  </first_frame>
            <second_frame>  L  Q  P  S  S  S  L  S  I  F  P  Q  R  R  T  Y  S  G  D  E  Q  Q  S  H  *  E  N  H  S  G  D  R  L  Q  T  T  M  R  P  I  L  M  K  G  H  E  R  P  L  T  F  L  K  Y  N  R  D  G  D  L  L  F  S  C  A  K  D  H  T  P  T  V  W  F  A  D  N  G  E  R  L  G  T  Y  R  G  H  N  G  A  V  W  C  C  D  V  S   : R  D  S  S  R  L  I  T  G  S  A  D  Q  T  A  M  L  W  D  V  Q  T  G  A  Q  L  H  T  F  T  F  D  S  P  A  R  S  V  D  F  S  V  G  D  K  L  A  V  I  T  T  D  P  F  M  G  L  T  S  A  I  H  I  K  N  I  S  K  D  P  S  E   : Q  M </second_frame>
            <third_frame>   C  N  R  L  R  L  S  P  S  F  L  S  G  E  L  T  P  A  T  N  N  N  L  T  E  R  I  T  P  A  T  D  Y  K  Q  R  *  G  Q  Y  *  *  R  A  M  K  G  R  *  L  F  *  S  T  T  E  M  E  I  C  S  S  L  A  L  R  T  I  P  L  P  F  G  L  P  I  T  A  S  A  S  A  L  T  V  A  I  T  V  P  F  G  A  V  T  F  L  :  G  I  R  P  G  *  *  L  E  V  R  I  R  L  Q  C  C  G  M  S  K  L  V  P  S  C  T  R  S  P  L  T  P  L  L  G  L  L  I  F  Q  L  A  I  N  S  Q  *  S  P  L  I  L  L  W  D  *  H  L  L  S  I  S  K  I  S  A  K  I  P  V  N  :  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0064J13.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12676" stop="12460"/>
                    <exon start="11368" stop="11153"/>
                    <exon start="10890" stop="10886"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENHSGDRLQTTMRPILMKGHERPLTFLKYNRDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSSRLITGSADQTAMLWDVQTGAQLHTFTFDSPARSVDFSVGDKLAVITTDPFMGLTSAIHIKNISKDPSEQM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="77729" PGL_stop="71754"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77729" e_stop="77685"/>
            <exon e_start="76692" e_stop="75049"/>
            <exon e_start="72021" e_stop="72011"/>
            <exon e_start="71785" e_stop="71754"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.905" e_score="0.994"/>
          <exon-intron don_prob="0.699" acc_prob="0.000" e_score="0.636"/>
          <exon-only e_score="0.688"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77729" e_stop="77685" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="77684" i_stop="76693" i_length="992"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="76692" e_stop="75049" e_length="1644"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.905">
            <gDNA_intron_boundary i_start="75048" i_stop="72022" i_length="3027"/>
          </intron>
          <exon e_serial="3" e_score="0.636">
            <gDNA_exon_boundary e_start="72021" e_stop="72011" e_length="11"/>
          </exon>
          <intron i_serial="3" don_prob="0.699" acc_prob="0.000">
            <gDNA_intron_boundary i_start="72010" i_stop="71786" i_length="225"/>
          </intron>
          <exon e_serial="4" e_score="0.688">
            <gDNA_exon_boundary e_start="71785" e_stop="71754" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77729" stop="77685"/>
              <exon start="76692" stop="76285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77724" stop="77685"/>
              <exon start="76692" stop="76197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77716" stop="77685"/>
              <exon start="76692" stop="75999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77715" stop="77685"/>
              <exon start="76692" stop="76298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76692" stop="76026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76290" stop="75644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76110" stop="75463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75982" stop="75136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75629" stop="75049"/>
              <exon start="72021" stop="72011"/>
              <exon start="71785" stop="71754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433880" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75613" stop="75059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75377" stop="75071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613470" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCCCAATAGTAAGAAAGAAGAACCATTGGCTGACCTTCAATCTG : GAAGCATATTCAGATATGGATCCTGACGACAGTCTAAGTGAAGATCCTTGGATAAAGTCTTCTTCGTCTGGCAACGAATTGCTGAAAATTATGCCCTCAGATAACCATTCATTTACCAATTTAAATCTGCATGAGCAGAAGTGGGAAGGTTCCTCTTATTTGGATCAAGAAATCAGGATTGAGCAACAGTTTACTGGATTTGCTAAACCAAAACACACATCTGAGATGGATCAACAGGGGAATCAAAATCATGATACGACCAGAATACATGACTGGGATCCAAGAGCTTTGCTAAACAACCTTTCGTTTCTCGAACAAAAGATTCATCAGCTCCAGGAGCTGGTGCATTTGATTGTTGGGCGGAGAGGTCAAGATGAGGTTCAGGGAAATGACCTTATAGTTCAGCAACAACAGTTAATCACAGCTGATCTTACTTCTATTATAGTCCAATTGATATCAACTGCAGGAAGTCTTCTTCCAACTATGAAGTACACTCTTTCCTCTGCGATTCCTGCTGCCAGCCAGCTTGGGCAGGTTGGTGGTGTCACAGTTCCTTCTACAGCAGGTACTAGTGCTGGTGGGCTAACATGTAATGATGGTGTTGCCAAGTTGGAAGATCAATCCAACCACATTGACCAGTTGAGAGATTGTGGGATTGAACACAATCATGCTGCCGATGAACATGAATTAAAAGATGAAGATGAAGCTGAGGAAGAAGAGAACCTTCCTCCCGGTTCCTATGAGATTCTACAGTTGGAAAAAGAGGAAATCCTTGCACCACACACTCACTTTTGCACAATTTGTGGCAAGGGATTTAAGAGGGATGCGAATTTGCGAATGCACATGAGAGGTCATGGAGATGAGTACAAGACTCCAGCAGCTCTTGCAAAGCCTCATAAAGAACCCAGTTCTGAGCCAACACTCATCAAAAGGTATTCCTGTCCGTATGTTGGATGCAAGCGCAATAAGGAGCATAAAAAGTTTCAACCTCTCAAAACCATCTTATGTGTGAAAAACCATTACAAGAGAACCCACTGTGAGAAAGCCTATACTTGCAGTAGATGTAACATTAAGAAATTTTCAGTAATTGCTGATCTTAAAACACATGAAAAGCATTGTGGAAAGGATAAGTGGCTTTGTTCCTGTGGAACAACATTTTCGAGGAAAGACAAGCTTTTTGGACACATTTCCCTTTTTCAAGGTCATACTCCTGCAGTTTCTCCGGATGAAACTAAAGGATCTGCTGGGACATCTGACCGGGGCCAAACCGGTGAAGTCACCATGAAAGCTCGACAAGAAAACTATAAGGTAAATGCTTCACTTGGCAATGAGTTTCAAAATCCCGGGGTTGTAAAAGAGTGTCCATACAATCCAAGCAGTTATTTCTCACCTTTGAACTTCGATACTAGCAATCTTAATGGATTTCAAGAGTTCCCTCGACCACCATTTGACGAGTCAGATAGCTCATTCTCATTTCTGCTGTCTGGATCATGTGAATACCCTCCTCACAAGGCTGCAAAATTTATGAGTTCTAGTGAAATGGAATAACATCAACCAGTATTCAATTTGTCTTTGGTTCATTGTAGCTATTTATTCTATTATGTCATTATTATATTTTCAGAGTAACTGTGTTTTCCTTAAGTT : ATTCACAAAGA : AAAAAAGGAAACGAAAAACTATAAAGAAGAGA</gDNA_template>
            <first_frame> F  P  I  V  R  K  K  N  H  W  L  T  F  N  L  :  E  A  Y  S  D  M  D  P  D  D  S  L  S  E  D  P  W  I  K  S  S  S  S  G  N  E  L  L  K  I  M  P  S  D  N  H  S  F  T  N  L  N  L  H  E  Q  K  W  E  G  S  S  Y  L  D  Q  E  I  R  I  E  Q  Q  F  T  G  F  A  K  P  K  H  T  S  E  M  D  Q  Q  G  N  Q  N  H  D  T  T  R  I  H  D  W  D  P  R  A  L  L  N  N  L  S  F  L  E  Q  K  I  H  Q  L  Q  E  L  V  H  L  I  V  G  R  R  G  Q  D  E  V  Q  G  N  D  L  I  V  Q  Q  Q  Q  L  I  T  A  D  L  T  S  I  I  V  Q  L  I  S  T  A  G  S  L  L  P  T  M  K  Y  T  L  S  S  A  I  P  A  A  S  Q  L  G  Q  V  G  G  V  T  V  P  S  T  A  G  T  S  A  G  G  L  T  C  N  D  G  V  A  K  L  E  D  Q  S  N  H  I  D  Q  L  R  D  C  G  I  E  H  N  H  A  A  D  E  H  E  L  K  D  E  D  E  A  E  E  E  E  N  L  P  P  G  S  Y  E  I  L  Q  L  E  K  E  E  I  L  A  P  H  T  H  F  C  T  I  C  G  K  G  F  K  R  D  A  N  L  R  M  H  M  R  G  H  G  D  E  Y  K  T  P  A  A  L  A  K  P  H  K  E  P  S  S  E  P  T  L  I  K  R  Y  S  C  P  Y  V  G  C  K  R  N  K  E  H  K  K  F  Q  P  L  K  T  I  L  C  V  K  N  H  Y  K  R  T  H  C  E  K  A  Y  T  C  S  R  C  N  I  K  K  F  S  V  I  A  D  L  K  T  H  E  K  H  C  G  K  D  K  W  L  C  S  C  G  T  T  F  S  R  K  D  K  L  F  G  H  I  S  L  F  Q  G  H  T  P  A  V  S  P  D  E  T  K  G  S  A  G  T  S  D  R  G  Q  T  G  E  V  T  M  K  A  R  Q  E  N  Y  K  V  N  A  S  L  G  N  E  F  Q  N  P  G  V  V  K  E  C  P  Y  N  P  S  S  Y  F  S  P  L  N  F  D  T  S  N  L  N  G  F  Q  E  F  P  R  P  P  F  D  E  S  D  S  S  F  S  F  L  L  S  G  S  C  E  Y  P  P  H  K  A  A  K  F  M  S  S  S  E  M  E  *  H  Q  P  V  F  N  L  S  L  V  H  C  S  Y  L  F  Y  Y  V  I  I  I  F  S  E  *  L  C  F  P  *  V  :  I  H  K  E :   K  K  E  T  K  N  Y  K  E  E  </first_frame>
            <second_frame>  S  Q  *  *  E  R  R  T  I  G  *  P  S  I  W :   K  H  I  Q  I  W  I  L  T  T  V  *  V  K  I  L  G  *  S  L  L  R  L  A  T  N  C  *  K  L  C  P  Q  I  T  I  H  L  P  I  *  I  C  M  S  R  S  G  K  V  P  L  I  W  I  K  K  S  G  L  S  N  S  L  L  D  L  L  N  Q  N  T  H  L  R  W  I  N  R  G  I  K  I  M  I  R  P  E  Y  M  T  G  I  Q  E  L  C  *  T  T  F  R  F  S  N  K  R  F  I  S  S  R  S  W  C  I  *  L  L  G  G  E  V  K  M  R  F  R  E  M  T  L  *  F  S  N  N  S  *  S  Q  L  I  L  L  L  L  *  S  N  *  Y  Q  L  Q  E  V  F  F  Q  L  *  S  T  L  F  P  L  R  F  L  L  P  A  S  L  G  R  L  V  V  S  Q  F  L  L  Q  Q  V  L  V  L  V  G  *  H  V  M  M  V  L  P  S  W  K  I  N  P  T  T  L  T  S  *  E  I  V  G  L  N  T  I  M  L  P  M  N  M  N  *  K  M  K  M  K  L  R  K  K  R  T  F  L  P  V  P  M  R  F  Y  S  W  K  K  R  K  S  L  H  H  T  L  T  F  A  Q  F  V  A  R  D  L  R  G  M  R  I  C  E  C  T  *  E  V  M  E  M  S  T  R  L  Q  Q  L  L  Q  S  L  I  K  N  P  V  L  S  Q  H  S  S  K  G  I  P  V  R  M  L  D  A  S  A  I  R  S  I  K  S  F  N  L  S  K  P  S  Y  V  *  K  T  I  T  R  E  P  T  V  R  K  P  I  L  A  V  D  V  T  L  R  N  F  Q  *  L  L  I  L  K  H  M  K  S  I  V  E  R  I  S  G  F  V  P  V  E  Q  H  F  R  G  K  T  S  F  L  D  T  F  P  F  F  K  V  I  L  L  Q  F  L  R  M  K  L  K  D  L  L  G  H  L  T  G  A  K  P  V  K  S  P  *  K  L  D  K  K  T  I  R  *  M  L  H  L  A  M  S  F  K  I  P  G  L  *  K  S  V  H  T  I  Q  A  V  I  S  H  L  *  T  S  I  L  A  I  L  M  D  F  K  S  S  L  D  H  H  L  T  S  Q  I  A  H  S  H  F  C  C  L  D  H  V  N  T  L  L  T  R  L  Q  N  L  *  V  L  V  K  W  N  N  I  N  Q  Y  S  I  C  L  W  F  I  V  A  I  Y  S  I  M  S  L  L  Y  F  Q  S  N  C  V  F  L  K  L :   F  T  K   : K  K  R  K  R  K  T  I  K  K  R </second_frame>
            <third_frame>   P  N  S  K  K  E  E  P  L  A  D  L  Q  S   : G  S  I  F  R  Y  G  S  *  R  Q  S  K  *  R  S  L  D  K  V  F  F  V  W  Q  R  I  A  E  N  Y  A  L  R  *  P  F  I  Y  Q  F  K  S  A  *  A  E  V  G  R  F  L  L  F  G  S  R  N  Q  D  *  A  T  V  Y  W  I  C  *  T  K  T  H  I  *  D  G  S  T  G  E  S  K  S  *  Y  D  Q  N  T  *  L  G  S  K  S  F  A  K  Q  P  F  V  S  R  T  K  D  S  S  A  P  G  A  G  A  F  D  C  W  A  E  R  S  R  *  G  S  G  K  *  P  Y  S  S  A  T  T  V  N  H  S  *  S  Y  F  Y  Y  S  P  I  D  I  N  C  R  K  S  S  S  N  Y  E  V  H  S  F  L  C  D  S  C  C  Q  P  A  W  A  G  W  W  C  H  S  S  F  Y  S  R  Y  *  C  W  W  A  N  M  *  *  W  C  C  Q  V  G  R  S  I  Q  P  H  *  P  V  E  R  L  W  D  *  T  Q  S  C  C  R  *  T  *  I  K  R  *  R  *  S  *  G  R  R  E  P  S  S  R  F  L  *  D  S  T  V  G  K  R  G  N  P  C  T  T  H  S  L  L  H  N  L  W  Q  G  I  *  E  G  C  E  F  A  N  A  H  E  R  S  W  R  *  V  Q  D  S  S  S  S  C  K  A  S  *  R  T  Q  F  *  A  N  T  H  Q  K  V  F  L  S  V  C  W  M  Q  A  Q  *  G  A  *  K  V  S  T  S  Q  N  H  L  M  C  E  K  P  L  Q  E  N  P  L  *  E  S  L  Y  L  Q  *  M  *  H  *  E  I  F  S  N  C  *  S  *  N  T  *  K  A  L  W  K  G  *  V  A  L  F  L  W  N  N  I  F  E  E  R  Q  A  F  W  T  H  F  P  F  S  R  S  Y  S  C  S  F  S  G  *  N  *  R  I  C  W  D  I  *  P  G  P  N  R  *  S  H  H  E  S  S  T  R  K  L  *  G  K  C  F  T  W  Q  *  V  S  K  S  R  G  C  K  R  V  S  I  Q  S  K  Q  L  F  L  T  F  E  L  R  Y  *  Q  S  *  W  I  S  R  V  P  S  T  T  I  *  R  V  R  *  L  I  L  I  S  A  V  W  I  M  *  I  P  S  S  Q  G  C  K  I  Y  E  F  *  *  N  G  I  T  S  T  S  I  Q  F  V  F  G  S  L  *  L  F  I  L  L  C  H  Y  Y  I  F  R  V  T  V  F  S  L  S   : Y  S  Q  R  :  K  K  G  N  E  K  L  *  R  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0064J13.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77729" stop="77685"/>
                    <exon start="76692" stop="75145"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1590</number_coding_nucleotides>
                  <number_encoded_amino_acids>530</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPIVRKKNHWLTFNLEAYSDMDPDDSLSEDPWIKSSSSGNELLKIMPSDNHSFTNLNLHEQKWEGSSYLDQEIRIEQQFTGFAKPKHTSEMDQQGNQNHDTTRIHDWDPRALLNNLSFLEQKIHQLQELVHLIVGRRGQDEVQGNDLIVQQQQLITADLTSIIVQLISTAGSLLPTMKYTLSSAIPAASQLGQVGGVTVPSTAGTSAGGLTCNDGVAKLEDQSNHIDQLRDCGIEHNHAADEHELKDEDEAEEEENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKEPSSEPTLIKRYSCPYVGCKRNKEHKKFQPLKTILCVKNHYKRTHCEKAYTCSRCNIKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHISLFQGHTPAVSPDETKGSAGTSDRGQTGEVTMKARQENYKVNASLGNEFQNPGVVKECPYNPSSYFSPLNFDTSNLNGFQEFPRPPFDESDSSFSFLLSGSCEYPPHKAAKFMSSSEME*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="77729" e_stop="77685"/>
            <exon e_start="76692" e_stop="75044"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77729" e_stop="77685" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="77684" i_stop="76693" i_length="992"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="76692" e_stop="75044" e_length="1649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77729" stop="77685"/>
              <exon start="76692" stop="76285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77724" stop="77685"/>
              <exon start="76692" stop="76197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77716" stop="77685"/>
              <exon start="76692" stop="75999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77715" stop="77685"/>
              <exon start="76692" stop="76298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76692" stop="76026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76290" stop="75644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76110" stop="75463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75982" stop="75136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75622" stop="75044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404266" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75613" stop="75059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75377" stop="75071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613470" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCCCAATAGTAAGAAAGAAGAACCATTGGCTGACCTTCAATCTG : GAAGCATATTCAGATATGGATCCTGACGACAGTCTAAGTGAAGATCCTTGGATAAAGTCTTCTTCGTCTGGCAACGAATTGCTGAAAATTATGCCCTCAGATAACCATTCATTTACCAATTTAAATCTGCATGAGCAGAAGTGGGAAGGTTCCTCTTATTTGGATCAAGAAATCAGGATTGAGCAACAGTTTACTGGATTTGCTAAACCAAAACACACATCTGAGATGGATCAACAGGGGAATCAAAATCATGATACGACCAGAATACATGACTGGGATCCAAGAGCTTTGCTAAACAACCTTTCGTTTCTCGAACAAAAGATTCATCAGCTCCAGGAGCTGGTGCATTTGATTGTTGGGCGGAGAGGTCAAGATGAGGTTCAGGGAAATGACCTTATAGTTCAGCAACAACAGTTAATCACAGCTGATCTTACTTCTATTATAGTCCAATTGATATCAACTGCAGGAAGTCTTCTTCCAACTATGAAGTACACTCTTTCCTCTGCGATTCCTGCTGCCAGCCAGCTTGGGCAGGTTGGTGGTGTCACAGTTCCTTCTACAGCAGGTACTAGTGCTGGTGGGCTAACATGTAATGATGGTGTTGCCAAGTTGGAAGATCAATCCAACCACATTGACCAGTTGAGAGATTGTGGGATTGAACACAATCATGCTGCCGATGAACATGAATTAAAAGATGAAGATGAAGCTGAGGAAGAAGAGAACCTTCCTCCCGGTTCCTATGAGATTCTACAGTTGGAAAAAGAGGAAATCCTTGCACCACACACTCACTTTTGCACAATTTGTGGCAAGGGATTTAAGAGGGATGCGAATTTGCGAATGCACATGAGAGGTCATGGAGATGAGTACAAGACTCCAGCAGCTCTTGCAAAGCCTCATAAAGAACCCAGTTCTGAGCCAACACTCATCAAAAGGTATTCCTGTCCGTATGTTGGATGCAAGCGCAATAAGGAGCATAAAAAGTTTCAACCTCTCAAAACCATCTTATGTGTGAAAAACCATTACAAGAGAACCCACTGTGAGAAAGCCTATACTTGCAGTAGATGTAACATTAAGAAATTTTCAGTAATTGCTGATCTTAAAACACATGAAAAGCATTGTGGAAAGGATAAGTGGCTTTGTTCCTGTGGAACAACATTTTCGAGGAAAGACAAGCTTTTTGGACACATTTCCCTTTTTCAAGGTCATACTCCTGCAGTTTCTCCGGATGAAACTAAAGGATCTGCTGGGACATCTGACCGGGGCCAAACCGGTGAAGTCACCATGAAAGCTCGACAAGAAAACTATAAGGTAAATGCTTCACTTGGCAATGAGTTTCAAAATCCCGGGGTTGTAAAAGAGTGTCCATACAATCCAAGCAGTTATTTCTCACCTTTGAACTTCGATACTAGCAATCTTAATGGATTTCAAGAGTTCCCTCGACCACCATTTGACGAGTCAGATAGCTCATTCTCATTTCTGCTGTCTGGATCATGTGAATACCCTCCTCACAAGGCTGCAAAATTTATGAGTTCTAGTGAAATGGAATAACATCAACCAGTATTCAATTTGTCTTTGGTTCATTGTAGCTATTTATTCTATTATGTCATTATTATATTTTCAGAGTAACTGTGTTTTCCTTAAGTTATATA</gDNA_template>
            <first_frame> F  P  I  V  R  K  K  N  H  W  L  T  F  N  L  :  E  A  Y  S  D  M  D  P  D  D  S  L  S  E  D  P  W  I  K  S  S  S  S  G  N  E  L  L  K  I  M  P  S  D  N  H  S  F  T  N  L  N  L  H  E  Q  K  W  E  G  S  S  Y  L  D  Q  E  I  R  I  E  Q  Q  F  T  G  F  A  K  P  K  H  T  S  E  M  D  Q  Q  G  N  Q  N  H  D  T  T  R  I  H  D  W  D  P  R  A  L  L  N  N  L  S  F  L  E  Q  K  I  H  Q  L  Q  E  L  V  H  L  I  V  G  R  R  G  Q  D  E  V  Q  G  N  D  L  I  V  Q  Q  Q  Q  L  I  T  A  D  L  T  S  I  I  V  Q  L  I  S  T  A  G  S  L  L  P  T  M  K  Y  T  L  S  S  A  I  P  A  A  S  Q  L  G  Q  V  G  G  V  T  V  P  S  T  A  G  T  S  A  G  G  L  T  C  N  D  G  V  A  K  L  E  D  Q  S  N  H  I  D  Q  L  R  D  C  G  I  E  H  N  H  A  A  D  E  H  E  L  K  D  E  D  E  A  E  E  E  E  N  L  P  P  G  S  Y  E  I  L  Q  L  E  K  E  E  I  L  A  P  H  T  H  F  C  T  I  C  G  K  G  F  K  R  D  A  N  L  R  M  H  M  R  G  H  G  D  E  Y  K  T  P  A  A  L  A  K  P  H  K  E  P  S  S  E  P  T  L  I  K  R  Y  S  C  P  Y  V  G  C  K  R  N  K  E  H  K  K  F  Q  P  L  K  T  I  L  C  V  K  N  H  Y  K  R  T  H  C  E  K  A  Y  T  C  S  R  C  N  I  K  K  F  S  V  I  A  D  L  K  T  H  E  K  H  C  G  K  D  K  W  L  C  S  C  G  T  T  F  S  R  K  D  K  L  F  G  H  I  S  L  F  Q  G  H  T  P  A  V  S  P  D  E  T  K  G  S  A  G  T  S  D  R  G  Q  T  G  E  V  T  M  K  A  R  Q  E  N  Y  K  V  N  A  S  L  G  N  E  F  Q  N  P  G  V  V  K  E  C  P  Y  N  P  S  S  Y  F  S  P  L  N  F  D  T  S  N  L  N  G  F  Q  E  F  P  R  P  P  F  D  E  S  D  S  S  F  S  F  L  L  S  G  S  C  E  Y  P  P  H  K  A  A  K  F  M  S  S  S  E  M  E  *  H  Q  P  V  F  N  L  S  L  V  H  C  S  Y  L  F  Y  Y  V  I  I  I  F  S  E  *  L  C  F  P  *  V  I   </first_frame>
            <second_frame>  S  Q  *  *  E  R  R  T  I  G  *  P  S  I  W :   K  H  I  Q  I  W  I  L  T  T  V  *  V  K  I  L  G  *  S  L  L  R  L  A  T  N  C  *  K  L  C  P  Q  I  T  I  H  L  P  I  *  I  C  M  S  R  S  G  K  V  P  L  I  W  I  K  K  S  G  L  S  N  S  L  L  D  L  L  N  Q  N  T  H  L  R  W  I  N  R  G  I  K  I  M  I  R  P  E  Y  M  T  G  I  Q  E  L  C  *  T  T  F  R  F  S  N  K  R  F  I  S  S  R  S  W  C  I  *  L  L  G  G  E  V  K  M  R  F  R  E  M  T  L  *  F  S  N  N  S  *  S  Q  L  I  L  L  L  L  *  S  N  *  Y  Q  L  Q  E  V  F  F  Q  L  *  S  T  L  F  P  L  R  F  L  L  P  A  S  L  G  R  L  V  V  S  Q  F  L  L  Q  Q  V  L  V  L  V  G  *  H  V  M  M  V  L  P  S  W  K  I  N  P  T  T  L  T  S  *  E  I  V  G  L  N  T  I  M  L  P  M  N  M  N  *  K  M  K  M  K  L  R  K  K  R  T  F  L  P  V  P  M  R  F  Y  S  W  K  K  R  K  S  L  H  H  T  L  T  F  A  Q  F  V  A  R  D  L  R  G  M  R  I  C  E  C  T  *  E  V  M  E  M  S  T  R  L  Q  Q  L  L  Q  S  L  I  K  N  P  V  L  S  Q  H  S  S  K  G  I  P  V  R  M  L  D  A  S  A  I  R  S  I  K  S  F  N  L  S  K  P  S  Y  V  *  K  T  I  T  R  E  P  T  V  R  K  P  I  L  A  V  D  V  T  L  R  N  F  Q  *  L  L  I  L  K  H  M  K  S  I  V  E  R  I  S  G  F  V  P  V  E  Q  H  F  R  G  K  T  S  F  L  D  T  F  P  F  F  K  V  I  L  L  Q  F  L  R  M  K  L  K  D  L  L  G  H  L  T  G  A  K  P  V  K  S  P  *  K  L  D  K  K  T  I  R  *  M  L  H  L  A  M  S  F  K  I  P  G  L  *  K  S  V  H  T  I  Q  A  V  I  S  H  L  *  T  S  I  L  A  I  L  M  D  F  K  S  S  L  D  H  H  L  T  S  Q  I  A  H  S  H  F  C  C  L  D  H  V  N  T  L  L  T  R  L  Q  N  L  *  V  L  V  K  W  N  N  I  N  Q  Y  S  I  C  L  W  F  I  V  A  I  Y  S  I  M  S  L  L  Y  F  Q  S  N  C  V  F  L  K  L  Y  </second_frame>
            <third_frame>   P  N  S  K  K  E  E  P  L  A  D  L  Q  S   : G  S  I  F  R  Y  G  S  *  R  Q  S  K  *  R  S  L  D  K  V  F  F  V  W  Q  R  I  A  E  N  Y  A  L  R  *  P  F  I  Y  Q  F  K  S  A  *  A  E  V  G  R  F  L  L  F  G  S  R  N  Q  D  *  A  T  V  Y  W  I  C  *  T  K  T  H  I  *  D  G  S  T  G  E  S  K  S  *  Y  D  Q  N  T  *  L  G  S  K  S  F  A  K  Q  P  F  V  S  R  T  K  D  S  S  A  P  G  A  G  A  F  D  C  W  A  E  R  S  R  *  G  S  G  K  *  P  Y  S  S  A  T  T  V  N  H  S  *  S  Y  F  Y  Y  S  P  I  D  I  N  C  R  K  S  S  S  N  Y  E  V  H  S  F  L  C  D  S  C  C  Q  P  A  W  A  G  W  W  C  H  S  S  F  Y  S  R  Y  *  C  W  W  A  N  M  *  *  W  C  C  Q  V  G  R  S  I  Q  P  H  *  P  V  E  R  L  W  D  *  T  Q  S  C  C  R  *  T  *  I  K  R  *  R  *  S  *  G  R  R  E  P  S  S  R  F  L  *  D  S  T  V  G  K  R  G  N  P  C  T  T  H  S  L  L  H  N  L  W  Q  G  I  *  E  G  C  E  F  A  N  A  H  E  R  S  W  R  *  V  Q  D  S  S  S  S  C  K  A  S  *  R  T  Q  F  *  A  N  T  H  Q  K  V  F  L  S  V  C  W  M  Q  A  Q  *  G  A  *  K  V  S  T  S  Q  N  H  L  M  C  E  K  P  L  Q  E  N  P  L  *  E  S  L  Y  L  Q  *  M  *  H  *  E  I  F  S  N  C  *  S  *  N  T  *  K  A  L  W  K  G  *  V  A  L  F  L  W  N  N  I  F  E  E  R  Q  A  F  W  T  H  F  P  F  S  R  S  Y  S  C  S  F  S  G  *  N  *  R  I  C  W  D  I  *  P  G  P  N  R  *  S  H  H  E  S  S  T  R  K  L  *  G  K  C  F  T  W  Q  *  V  S  K  S  R  G  C  K  R  V  S  I  Q  S  K  Q  L  F  L  T  F  E  L  R  Y  *  Q  S  *  W  I  S  R  V  P  S  T  T  I  *  R  V  R  *  L  I  L  I  S  A  V  W  I  M  *  I  P  S  S  Q  G  C  K  I  Y  E  F  *  *  N  G  I  T  S  T  S  I  Q  F  V  F  G  S  L  *  L  F  I  L  L  C  H  Y  Y  I  F  R  V  T  V  F  S  L  S  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0064J13.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77729" stop="77685"/>
                    <exon start="76692" stop="75145"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1590</number_coding_nucleotides>
                  <number_encoded_amino_acids>530</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPIVRKKNHWLTFNLEAYSDMDPDDSLSEDPWIKSSSSGNELLKIMPSDNHSFTNLNLHEQKWEGSSYLDQEIRIEQQFTGFAKPKHTSEMDQQGNQNHDTTRIHDWDPRALLNNLSFLEQKIHQLQELVHLIVGRRGQDEVQGNDLIVQQQQLITADLTSIIVQLISTAGSLLPTMKYTLSSAIPAASQLGQVGGVTVPSTAGTSAGGLTCNDGVAKLEDQSNHIDQLRDCGIEHNHAADEHELKDEDEAEEEENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKEPSSEPTLIKRYSCPYVGCKRNKEHKKFQPLKTILCVKNHYKRTHCEKAYTCSRCNIKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHISLFQGHTPAVSPDETKGSAGTSDRGQTGEVTMKARQENYKVNASLGNEFQNPGVVKECPYNPSSYFSPLNFDTSNLNGFQEFPRPPFDESDSSFSFLLSGSCEYPPHKAAKFMSSSEME*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="72197" PGL_stop="72731"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72197" e_stop="72731"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="72197" e_stop="72731" e_length="535"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72197" stop="72731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438313" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTCTCCAGAATGACCAAATTCAGAAAGAGGATTATGATATGGTGCAAGGTCTAGACTCATCATTTTCTGGTATGAGTTCATTACCGCGTCTGAGAAGTTTGACTCCACCAGCTCCTCCAATGCTTGATAAAAATGTGGCCGCAAACGAAAATCTACCAGGGAATATCCATGAAGAAGGTGAAATCAGTTTGCGGCAGCCTGCTTACCAAGCTGACAAGGAAAACAGCATACCAGAAGCTCTTCTTGTCCCAGGACAGTCTCCAAATGAAAATGCAGATGGTACCCCACCAAGATCTCAGCAAAGATGTTCAAGTATTTGGTCTAGAAGGGGAAAACACTCCAATGTTCAGATTCAAACTGGTAAAGATAGAGCAATGAATGAAAATATTGACATGGAAACTGAAGTTGAATCAATTAATCGTGAAATAGAAGGAACTATATCAGTTTCTAAAGATCTTTTTGCTAGTGGAAACAAGGATAAAGAGGAAGAGGTCTTTACTCCTGACAAAGAGAACCATACTCCCAGTTCTCT</gDNA_template>
            <first_frame> F  L  S  R  M  T  K  F  R  K  R  I  M  I  W  C  K  V  *  T  H  H  F  L  V  *  V  H  Y  R  V  *  E  V  *  L  H  Q  L  L  Q  C  L  I  K  M  W  P  Q  T  K  I  Y  Q  G  I  S  M  K  K  V  K  S  V  C  G  S  L  L  T  K  L  T  R  K  T  A  Y  Q  K  L  F  L  S  Q  D  S  L  Q  M  K  M  Q  M  V  P  H  Q  D  L  S  K  D  V  Q  V  F  G  L  E  G  E  N  T  P  M  F  R  F  K  L  V  K  I  E  Q  *  M  K  I  L  T  W  K  L  K  L  N  Q  L  I  V  K  *  K  E  L  Y  Q  F  L  K  I  F  L  L  V  E  T  R  I  K  R  K  R  S  L  L  L  T  K  R  T  I  L  P  V  L  </first_frame>
            <second_frame>  F  S  P  E  *  P  N  S  E  R  G  L  *  Y  G  A  R  S  R  L  I  I  F  W  Y  E  F  I  T  A  S  E  K  F  D  S  T  S  S  S  N  A  *  *  K  C  G  R  K  R  K  S  T  R  E  Y  P  *  R  R  *  N  Q  F  A  A  A  C  L  P  S  *  Q  G  K  Q  H  T  R  S  S  S  C  P  R  T  V  S  K  *  K  C  R  W  Y  P  T  K  I  S  A  K  M  F  K  Y  L  V  *  K  G  K  T  L  Q  C  S  D  S  N  W  *  R  *  S  N  E  *  K  Y  *  H  G  N  *  S  *  I  N  *  S  *  N  R  R  N  Y  I  S  F  *  R  S  F  C  *  W  K  Q  G  *  R  G  R  G  L  Y  S  *  Q  R  E  P  Y  S  Q  F  S </second_frame>
            <third_frame>   S  L  Q  N  D  Q  I  Q  K  E  D  Y  D  M  V  Q  G  L  D  S  S  F  S  G  M  S  S  L  P  R  L  R  S  L  T  P  P  A  P  P  M  L  D  K  N  V  A  A  N  E  N  L  P  G  N  I  H  E  E  G  E  I  S  L  R  Q  P  A  Y  Q  A  D  K  E  N  S  I  P  E  A  L  L  V  P  G  Q  S  P  N  E  N  A  D  G  T  P  P  R  S  Q  Q  R  C  S  S  I  W  S  R  R  G  K  H  S  N  V  Q  I  Q  T  G  K  D  R  A  M  N  E  N  I  D  M  E  T  E  V  E  S  I  N  R  E  I  E  G  T  I  S  V  S  K  D  L  F  A  S  G  N  K  D  K  E  E  E  V  F  T  P  D  K  E  N  H  T  P  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0064J13.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72199" stop="72729"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLQNDQIQKEDYDMVQGLDSSFSGMSSLPRLRSLTPPAPPMLDKNVAANENLPGNIHEEGEISLRQPAYQADKENSIPEALLVPGQSPNENADGTPPRSQQRCSSIWSRRGKHSNVQIQTGKDRAMNENIDMETEVESINREIEGTISVSKDLFASGNKDKEEEVFTPDKENHTPSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="73913" PGL_stop="74701"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73913" e_stop="74308"/>
            <exon e_start="74383" e_stop="74701"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.998" e_score="0.995"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="73913" e_stop="74308" e_length="396"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.998">
            <gDNA_intron_boundary i_start="74309" i_stop="74382" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="74383" e_stop="74701" e_length="319"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73913" stop="74308"/>
              <exon start="74383" stop="74701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346659" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTTGTTGACAGTCATAAGAGAATTGGATTGCATGAAGAGGCGTGCTAGTCTATTTAGAAGGACAACTGAGGTATCTGCAGCATTAGAATGGATAGAAGACTGCATGATAAATGCAAAGGCATGGATTCATGTACAGAGTTGTGCAGAGGAAACAAGAGCAGTGGCACCAACCCCTCCTGCTACAGCTCCATTGTCTTTGTTCAGTGAGGAGAATGGCATGTTTCCTGTTGGCTCACATCAATTTTCTCCACATAGTGGTCTAATGGATTTTGCCTCACCCACAGCAGAAGATCATATCCTTGAATATGCCCTCTTCTTCAAAAGAACCAACAGAAACGGACAACTCGTCCTTCTTAGCAACGATCTTACCATGAAAATCAAAGCCATGGCAGAA : GGTTTGAACTGTGAGACAGCAGAAGAGTTCCGCGAGAGCTTAGTGAATCCATTCTCTGAGAGATTTCTTTGGAAGGACAGCTCTCCCAGGGGAAGGACTTGGTCATGTGAGGATGACTTTGTTCTTAGGGAAACATATTACCACGGCCCTCCAAAGAAGCCATCAATGTCAGGAGAAGCTGCAAAAGGGTTGAAGCTCATATTGCTCCATAATTCTCATTTTAGGTGCCACATCAGTACAGCCAGTTGAATCAGTTAGGTATTATAGCTGTGTACAACCTTTTCTTTTCAATTGCAACAATCATGTTCAATTTCTTTTG</gDNA_template>
            <first_frame> S  L  L  T  V  I  R  E  L  D  C  M  K  R  R  A  S  L  F  R  R  T  T  E  V  S  A  A  L  E  W  I  E  D  C  M  I  N  A  K  A  W  I  H  V  Q  S  C  A  E  E  T  R  A  V  A  P  T  P  P  A  T  A  P  L  S  L  F  S  E  E  N  G  M  F  P  V  G  S  H  Q  F  S  P  H  S  G  L  M  D  F  A  S  P  T  A  E  D  H  I  L  E  Y  A  L  F  F  K  R  T  N  R  N  G  Q  L  V  L  L  S  N  D  L  T  M  K  I  K  A  M  A  E  :  G  L  N  C  E  T  A  E  E  F  R  E  S  L  V  N  P  F  S  E  R  F  L  W  K  D  S  S  P  R  G  R  T  W  S  C  E  D  D  F  V  L  R  E  T  Y  Y  H  G  P  P  K  K  P  S  M  S  G  E  A  A  K  G  L  K  L  I  L  L  H  N  S  H  F  R  C  H  I  S  T  A  S  *  I  S  *  V  L  *  L  C  T  T  F  S  F  Q  L  Q  Q  S  C  S  I  S  F  </first_frame>
            <second_frame>  P  C  *  Q  S  *  E  N  W  I  A  *  R  G  V  L  V  Y  L  E  G  Q  L  R  Y  L  Q  H  *  N  G  *  K  T  A  *  *  M  Q  R  H  G  F  M  Y  R  V  V  Q  R  K  Q  E  Q  W  H  Q  P  L  L  L  Q  L  H  C  L  C  S  V  R  R  M  A  C  F  L  L  A  H  I  N  F  L  H  I  V  V  *  W  I  L  P  H  P  Q  Q  K  I  I  S  L  N  M  P  S  S  S  K  E  P  T  E  T  D  N  S  S  F  L  A  T  I  L  P  *  K  S  K  P  W  Q  K :   V  *  T  V  R  Q  Q  K  S  S  A  R  A  *  *  I  H  S  L  R  D  F  F  G  R  T  A  L  P  G  E  G  L  G  H  V  R  M  T  L  F  L  G  K  H  I  T  T  A  L  Q  R  S  H  Q  C  Q  E  K  L  Q  K  G  *  S  S  Y  C  S  I  I  L  I  L  G  A  T  S  V  Q  P  V  E  S  V  R  Y  Y  S  C  V  Q  P  F  L  F  N  C  N  N  H  V  Q  F  L  L </second_frame>
            <third_frame>   L  V  D  S  H  K  R  I  G  L  H  E  E  A  C  *  S  I  *  K  D  N  *  G  I  C  S  I  R  M  D  R  R  L  H  D  K  C  K  G  M  D  S  C  T  E  L  C  R  G  N  K  S  S  G  T  N  P  S  C  Y  S  S  I  V  F  V  Q  *  G  E  W  H  V  S  C  W  L  T  S  I  F  S  T  *  W  S  N  G  F  C  L  T  H  S  R  R  S  Y  P  *  I  C  P  L  L  Q  K  N  Q  Q  K  R  T  T  R  P  S  *  Q  R  S  Y  H  E  N  Q  S  H  G  R   : R  F  E  L  *  D  S  R  R  V  P  R  E  L  S  E  S  I  L  *  E  I  S  L  E  G  Q  L  S  Q  G  K  D  L  V  M  *  G  *  L  C  S  *  G  N  I  L  P  R  P  S  K  E  A  I  N  V  R  R  S  C  K  R  V  E  A  H  I  A  P  *  F  S  F  *  V  P  H  Q  Y  S  Q  L  N  Q  L  G  I  I  A  V  Y  N  L  F  F  S  I  A  T  I  M  F  N  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0064J13.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73913" stop="74308"/>
                    <exon start="74383" stop="74631"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLTVIRELDCMKRRASLFRRTTEVSAALEWIEDCMINAKAWIHVQSCAEETRAVAPTPPATAPLSLFSEENGMFPVGSHQFSPHSGLMDFASPTAEDHILEYALFFKRTNRNGQLVLLSNDLTMKIKAMAEGLNCETAEEFRESLVNPFSERFLWKDSSPRGRTWSCEDDFVLRETYYHGPPKKPSMSGEAAKGLKLILLHNSHFRCHISTAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="75028" PGL_stop="75789"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75028" e_stop="75789"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="75028" e_stop="75789" e_length="762"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75028" stop="75789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577549" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAGCAACAATTATACTATATAACTTAAGGAAAACACAGTTACTCTGAAAATATAATAATGACATAATAGAATAAATAGCTACAATGAACCAAAGACAAATTGAATACTGGTTGATGTTATTCCATTTCACTAGAACTCATAAATTTTGCAGCCTTGTGAGGAGGGTATTCACATGATCCAGACAGCAGAAATGAGAATGAGCTATCTGACTCGTCAAATGGTGGTCGAGGGAACTCTTGAAATCCATTAAGATTGCTAGTATCGAAGTTCAAAGGTGAGAAATAACTGCTTGGATTGTATGGACACTCTTTTACAACCCCGGGATTTTGAAACTCATTGCCAAGTGAAGCATTTACCTTATAGTTTTCTTGTCGAGCTTTCATGGTGACTTCACCGGTTTGGCCCCGGTCAGATGTCCCAGCAGATCCTTTAGTTTCATCCGGAGAAACTGCAGGAGTATGACCTTGAAAAAGGGAAATGTGTCCAAAAAGCTTGTCTTTCCTCGAAAATGTTGTTCCACAGGAACAAAGCCACTTATCCTTTCCACAATGCTTTTCATGTGTTTTAAGATCAGCAATTACTGAAAATTTCTTAATGTTACATCTACTGCAAGTATAGGCTTTCTCACAGTGGGTTCTCTTGTAATGGTTTTTCACACATAAGATGGTTTTGAGAGGTTGAAACTTTTTATGCTCCTTATTGCGCTTGCATCCAACATACGGACAGGAATACCTTTTGATGAGTGTTGGCTCAGAACTGGG</gDNA_template>
            <first_frame> I  A  T  I  I  L  Y  N  L  R  K  T  Q  L  L  *  K  Y  N  N  D  I  I  E  *  I  A  T  M  N  Q  R  Q  I  E  Y  W  L  M  L  F  H  F  T  R  T  H  K  F  C  S  L  V  R  R  V  F  T  *  S  R  Q  Q  K  *  E  *  A  I  *  L  V  K  W  W  S  R  E  L  L  K  S  I  K  I  A  S  I  E  V  Q  R  *  E  I  T  A  W  I  V  W  T  L  F  Y  N  P  G  I  L  K  L  I  A  K  *  S  I  Y  L  I  V  F  L  S  S  F  H  G  D  F  T  G  L  A  P  V  R  C  P  S  R  S  F  S  F  I  R  R  N  C  R  S  M  T  L  K  K  G  N  V  S  K  K  L  V  F  P  R  K  C  C  S  T  G  T  K  P  L  I  L  S  T  M  L  F  M  C  F  K  I  S  N  Y  *  K  F  L  N  V  T  S  T  A  S  I  G  F  L  T  V  G  S  L  V  M  V  F  H  T  *  D  G  F  E  R  L  K  L  F  M  L  L  I  A  L  A  S  N  I  R  T  G  I  P  F  D  E  C  W  L  R  T  G </first_frame>
            <second_frame>  *  Q  Q  L  Y  Y  I  T  *  G  K  H  S  Y  S  E  N  I  I  M  T  *  *  N  K  *  L  Q  *  T  K  D  K  L  N  T  G  *  C  Y  S  I  S  L  E  L  I  N  F  A  A  L  *  G  G  Y  S  H  D  P  D  S  R  N  E  N  E  L  S  D  S  S  N  G  G  R  G  N  S  *  N  P  L  R  L  L  V  S  K  F  K  G  E  K  *  L  L  G  L  Y  G  H  S  F  T  T  P  G  F  *  N  S  L  P  S  E  A  F  T  L  *  F  S  C  R  A  F  M  V  T  S  P  V  W  P  R  S  D  V  P  A  D  P  L  V  S  S  G  E  T  A  G  V  *  P  *  K  R  E  M  C  P  K  S  L  S  F  L  E  N  V  V  P  Q  E  Q  S  H  L  S  F  P  Q  C  F  S  C  V  L  R  S  A  I  T  E  N  F  L  M  L  H  L  L  Q  V  *  A  F  S  Q  W  V  L  L  *  W  F  F  T  H  K  M  V  L  R  G  *  N  F  L  C  S  L  L  R  L  H  P  T  Y  G  Q  E  Y  L  L  M  S  V  G  S  E  L   </second_frame>
            <third_frame>   S  N  N  Y  T  I  *  L  K  E  N  T  V  T  L  K  I  *  *  *  H  N  R  I  N  S  Y  N  E  P  K  T  N  *  I  L  V  D  V  I  P  F  H  *  N  S  *  I  L  Q  P  C  E  E  G  I  H  M  I  Q  T  A  E  M  R  M  S  Y  L  T  R  Q  M  V  V  E  G  T  L  E  I  H  *  D  C  *  Y  R  S  S  K  V  R  N  N  C  L  D  C  M  D  T  L  L  Q  P  R  D  F  E  T  H  C  Q  V  K  H  L  P  Y  S  F  L  V  E  L  S  W  *  L  H  R  F  G  P  G  Q  M  S  Q  Q  I  L  *  F  H  P  E  K  L  Q  E  Y  D  L  E  K  G  K  C  V  Q  K  A  C  L  S  S  K  M  L  F  H  R  N  K  A  T  Y  P  F  H  N  A  F  H  V  F  *  D  Q  Q  L  L  K  I  S  *  C  Y  I  Y  C  K  Y  R  L  S  H  S  G  F  S  C  N  G  F  S  H  I  R  W  F  *  E  V  E  T  F  Y  A  P  Y  C  A  C  I  Q  H  T  D  R  N  T  F  *  *  V  L  A  Q  N  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0064J13.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75376" stop="75612"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIYLIVFLSSFHGDFTGLAPVRCPSRSFSFIRRNCRSMTLKKGNVSKKLVFPRKCCSTGTKPLILSTMLFMCFKISNY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="85109" PGL_stop="85667"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85109" e_stop="85667"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="85109" e_stop="85667" e_length="559"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85109" stop="85667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACATGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAAGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTATGATGATAGTATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAACGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGTTCCAGTTTTCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCCCTACCATGACCACCTCTACCTCTAACATTTGGAGGTTTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCATATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGCGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCGCC</gDNA_template>
            <first_frame> K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  *  Y  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  L  S  V  H  C  P  Y  H  V  V  M  *  W  F  Q  F  S  H  H  L  G  H  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  P  Y  H  D  H  L  Y  L  *  H  L  E  V  C  N  S  V  L  D  N  I  S  *  Y  V  Q  S  P  H  I  H  S  T  L  W  V  H  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  W  V  E  L  R  N  L  R  N  P  V  L  *  S  K  N  H  *  T  R  </first_frame>
            <second_frame>  N  M  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  K  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  Y  D  D  S  I  R  C  L  R  F  R  P  P  R  E  N  V  T  M  G  P  I  V  C  L  S  I  A  P  T  M  L  *  C  S  G  S  S  F  P  I  T  S  A  I  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  A  P  T  M  T  T  S  T  S  N  I  W  R  F  V  T  L  F  W  T  I  S  L  N  M  S  N  L  P  I  S  I  A  L  S  G  F  M  H  R  S  L  R  E  V  L  T  G  R  R  W  T  P  N  Y  S  L  *  *  R  L  N  G  S  N  C  V  T  S  G  T  L  S  S  R  V  R  T  I  K  L  A </second_frame>
            <third_frame>   T  *  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  R  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  M  M  I  V  S  D  A  S  A  S  D  R  P  G  K  T  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  V  P  V  F  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  T  F  G  G  L  *  L  C  F  G  Q  Y  L  L  I  C  P  I  S  P  Y  P  *  H  S  L  G  S  C  I  G  L  S  E  K  C  *  P  V  G  G  G  P  P  T  T  V  C  S  E  D  *  M  G  R  T  A  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0064J13.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85341" stop="85595"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSFPITSAILVTTITSTTTSSRITAPTMTTSTSNIWRFVTLFWTISLNMSNLPISIALSGFMHRSLREVLTGRRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="87353" PGL_stop="86640"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87353" e_stop="86640"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="87353" e_stop="86640" e_length="714"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87353" stop="86640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87323" stop="87077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGCAAGCGTGCCGTCGTCTTCGACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTCGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTAGCTTCTTAGAATACTCTTAGTTTAGTGATTTGATTATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATGATAAGTTTTGAGTTATAGAAGTTGACTATTGATTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATATTATATTGAAATGTTAAGGTTTAGATTGATTGGTTTGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCACGGCCCGGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAAGAACGGTAGAGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCATTCTTTCTTTCGTGCTACTACTTGGGTCCATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCACCAACATCAGCACCGGCGGGACAGGGTGCGTCTGAGCCAGCCAATGGGGCTGTAG</gDNA_template>
            <first_frame> Q  Q  A  C  R  R  L  R  L  N  S  N  S  S  Q  S  Y  Y  I  G  N  S  G  *  A  N  A  S  S  L  D  W  I  F  F  F  K  S  R  C  L  E  L  P  A  W  T  S  F  L  C  I  L  A  S  *  N  T  L  S  L  V  I  *  L  *  M  F  L  *  *  *  L  P  D  F  G  E  *  *  V  L  S  Y  R  S  *  L  L  I  F  I  N  E  F  K  S  S  A  L  L  Y  V  D  I  I  L  K  C  *  G  L  D  *  L  V  C  S  H  R  R  V  S  V  G  A  S  H  G  P  D  L  G  R  D  K  L  G  I  R  A  L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  K  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  H  S  F  F  R  A  T  T  W  V  H  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  Q  H  R  R  D  R  V  R  L  S  Q  P  M  G  L  * </first_frame>
            <second_frame>  S  K  R  A  V  V  F  D  S  T  V  I  Q  A  S  L  T  T  S  E  I  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  S  L  D  A  L  N  F  R  H  G  L  A  S  Y  V  F  *  L  L  R  I  L  L  V  *  *  F  D  Y  R  C  S  C  D  D  D  F  Q  I  L  G  N  D  K  F  *  V  I  E  V  D  Y  *  F  L  L  M  S  L  S  L  P  H  Y  F  M  L  I  L  Y  *  N  V  K  V  *  I  D  W  F  A  H  I  G  G  *  V  W  V  P  V  T  A  R  I  W  V  V  T  N  L  V  S  E  H  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  R  T  V  E  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  I  L  S  F  V  L  L  L  G  S  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  N  *  S  N  D  Y  A  S  T  N  I  S  T  G  G  T  G  C  V  *  A  S  Q  W  G  C   </second_frame>
            <third_frame>   A  S  V  P  S  S  S  T  Q  Q  *  F  K  P  V  L  L  H  R  K  F  R  V  S  *  C  F  *  L  G  L  D  L  L  L  Q  V  S  M  P  *  T  S  G  M  D  *  L  L  M  Y  F  S  F  L  E  Y  S  *  F  S  D  L  I  I  D  V  L  V  M  M  T  S  R  F  W  G  M  I  S  F  E  L  *  K  L  T  I  D  F  Y  *  *  V  *  V  F  R  I  T  L  C  *  Y  Y  I  E  M  L  R  F  R  L  I  G  L  L  T  *  E  G  K  C  G  C  Q  S  R  P  G  F  G  S  *  Q  T  W  Y  Q  S  I  R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  R  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  S  I  L  S  F  F  L  S  C  Y  Y  L  G  P  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  I  S  Q  M  V  R  T  R  A  T  T  T  P  A  P  T  S  A  P  A  G  Q  G  A  S  E  P  A  N  G  A  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0064J13.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86837" stop="86640"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFRKIPFFHSFFRATTWVHWYLGDTNWYLTIFTLFRRWLELEQRLRQHQHQHRRDRVRLSQPMGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="88006" PGL_stop="87359"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88006" e_stop="87733"/>
            <exon e_start="87694" e_stop="87359"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.945"/>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="88006" e_stop="87733" e_length="274"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="87732" i_stop="87695" i_length="38"/>
          </intron>
          <exon e_serial="2" e_score="0.932">
            <gDNA_exon_boundary e_start="87694" e_stop="87359" e_length="336"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88006" stop="87733"/>
              <exon start="87694" stop="87451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87595" stop="87359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAATGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTGCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGGATCGGGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCAC : GTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAAGGAATCTTGAAAGATGTTAATATATTCAATTTAATGAACCGAATCCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTAATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACTGTTTTCTATTTTGAGTTGGCCGATGATACCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTGTTTATTTGTG</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  G  I  K  E  G  L  M  N  E  S  S  E  I  R  G  S  G  A  T  L  R  Y  Q  D  S  I  *  G  S  E  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  V  Y  G  S  G  V  T  F  R  H  Q  D  S  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S   : R  S  D  T  R  I  V  Y  *  G  A  E  C  H  V  P  T  R  G  E  *  R  *  G  I  L  K  D  V  N  I  F  N  L  M  N  R  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I  L  F  S  I  L  S  W  P  M  I  P  T  Q  Y  P  C  F  V  L  T  P  T  F  I  V  F  F  L  F  I  C  </first_frame>
            <second_frame>  L  I  Y  F  V  N  D  D  A  L  V  *  K  K  A  *  *  M  K  V  V  R  L  G  D  R  V  P  R  C  G  T  R  I  V  Y  E  D  R  S  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  Y  M  D  R  V  S  R  S  D  T  R  I  V  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  :  V  P  T  P  G  *  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  K  D  K  E  S  *  K  M  L  I  Y  S  I  *  *  T  E  S  P  N  E  Y  D  E  E  A  *  V  L  I  N  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  L  F  S  S  C  L  F  V </second_frame>
            <third_frame>   *  S  T  L  L  M  M  M  P  W  Y  K  R  R  L  D  E  *  K  *  *  D  *  G  I  G  C  H  V  A  V  P  G  *  Y  M  R  I  G  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  S  I  W  I  G  C  H  V  P  T  P  G  *  Y  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T :   F  R  H  Q  D  S  I  L  R  S  G  V  S  R  T  D  T  R  G  I  K  I  R  N  L  E  R  C  *  Y  I  Q  F  N  E  P  N  P  Q  M  S  M  M  R  R  R  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  Y  T  V  F  Y  F  E  L  A  D  D  T  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  C  F  L  L  V  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0064J13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 202 chains have been computed
$ 
$ memory statistics:
$ 235096 bytes spliced alignments in total
$ 61 spliced alignments have been stored
$ 3854 bytes was the average size of a spliced alignment
$ 17504 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1750 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 226 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 02:32:56
-->
