<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 05:34:28"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11SLm0052K14-Gnxja/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11SLm0052K14-Gnxja/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11SLm0052K14-Gnxja/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320258" ref_strand="+" ref_description="SGN-U320258        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-related, similar to SP:Q9Y2B2 N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase (EC 3.5.1.-) (Phosphatidylinositol-glycan biosynthesis, class L protein) (PIG-L) {Homo sapiens} | chr3:21538617-21540876 FORWARD | Aliases: F9D24.40(evalue: 2e-78, score=289) genbank/nr: At3g58130(evalue: 2e-76, score=289)">
      <seq>ctgatttttctatattcaggtctgctggtaaaaaagttaaatggagtggctagtaatcatcgttacagtggttgtgctgtgggtggcttcactctttaaaattcttcacgaatctctctctgcctcacaagttaaagttttgaatgatggtggggttttttgcaagagaaacgtgttgttgattattgcccatccggatgatgagtctatgttctttactccaaccattaattatttgtcttcaagaggatgtaatttgcacatattatgcatgtcaaaaggtaatgcagatggtataggcgatgtcagaaaagaagaactttatttagcctcggttgtgcttaaggttccacaaaagcaagtgaaagtccttgaccatccagatctacaggatggttttggcaaatcatggaactctaagttactgtcaaagattatcaaggaggaaattgtcaattgtgcaattgatttggtcataacttttgataattatggagtctcaggtcactgtaaccatcaagatgttcatcaaggtgtacgaaaactattgcaagatacttcacataaagaagttgaggcctgggagcttgttagcactagcatattgcgcaagtacagtggaccagttgacatatggttgtccctcctatctgccaagttccattttagtggagtggcacattgctttctaaacgtacatcccggaaggagcttagctgcaatggctcagcacaggagtcagtgggtttggtttcgcaagctatttgtttctttctcaagttacacatacgttaactgcgttaggaagatcaactagatacatgttaagagtcgttggttcaggaagacacttgaaaggaagatcgactagactagacgttagtttggtccaacaacacttgaaatggcaatggtaagtaaaaccacttagttttcgatcatctaagtctctcttgtgagttcttctttgaaaaacttccgattgattaaaaattggagaagtgtttcaatgtttttttgtggttgtagaatagttggaactacttcacttaattaaatcgagtataaatgatttgagctcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11SLm0052K14-Gnxja/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11SLm0052K14.1" temp_strand="+" temp_description="C11SLm0052K14.1  AC220061.1 htgs_phase:3 submitted_to_sgn_as:gi|170933591|gb|AC220061.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11SLm0052K14, complete sequence">
        <position start="7747" stop="17184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10925" g_stop="11074" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11075" i_stop="11174" i_length="100">
            <donor d_prob="0.262" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11175" g_stop="11234" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="210" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11235" i_stop="12174" i_length="940">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.310" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12175" g_stop="12245" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="281" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12246" i_stop="12649" i_length="404">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12650" g_stop="12714" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="346" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12715" i_stop="12913" i_length="199">
            <donor d_prob="0.691" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12914" g_stop="12958" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="391" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12959" i_stop="13037" i_length="79">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13038" g_stop="13118" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="472" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="13119" i_stop="14801" i_length="1683">
            <donor d_prob="0.708" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14802" g_stop="14869" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="540" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14870" i_stop="15685" i_length="816">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15686" g_stop="15734" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="589" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15735" i_stop="16047" i_length="313">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="16048" g_stop="16208" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="750" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="16209" i_stop="16549" i_length="341">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.748" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="16550" g_stop="16884" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="1086" r_length="336" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11SLm0052K14.1" gen_strand="+" ref_id="SGN-U320258" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>1085</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11SLm0052K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10925" e_stop="11074"/>
          <exon e_start="11175" e_stop="11234"/>
          <exon e_start="12175" e_stop="12245"/>
          <exon e_start="12650" e_stop="12714"/>
          <exon e_start="12914" e_stop="12958"/>
          <exon e_start="13038" e_stop="13118"/>
          <exon e_start="14802" e_stop="14869"/>
          <exon e_start="15686" e_stop="15734"/>
          <exon e_start="16048" e_stop="16208"/>
          <exon e_start="16550" e_stop="16884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTCTGTGCTATATGTAGGTCTGCTGGTAAAAAAGTTAAATGGAGTGGCTAGTAATCATCGTTACAGTGGTTGTGCTGTGGGTGGCTTCACTCTTTAAAATTCTTCACGAATCTCTCTCTGCCTCACAAGTTAAAGTTTTGAATGATGGTAGCTTTCCCTGTAGTGTTTGTTGTACAGCTAATTGCTTCCTTCTTTTTTAGGATTAGCTAATTGCTTCCCTTAATATGAAATTCTTTTTATGTTTCAG-TGGGGTTTTTTGCAAGAGAAACGTGTTGTTGATTATTGCCCATCCGGATGATGAGTCTATGTAAGGTTGAACTCTTAACTTTGAGTTGTTATTTGTTCCTGTCATAATTTTTTTGAGAAATGCAAACTCTTGAATTGCTGTAGAGGGAGTTGCAGGCTAAGACACTTGGAACTGTATGTTACTTTTGATCAAGATTATGTGAGCCCTATGTATGTCTAGTTATACTCTAATGCAAAGTTGCTCAGTTGAAACAAAATTTAATTAGTTGAACTCGTAGGTGCATTCACTGAATAATAACTTAATGAGTCTCCATGAATTCATACGTCCATCTTGAAACGTGGTGGACTAGAATTTTGGTGGGCTAAACTATAAGATTCAATTTTTACCCCTTTGTAAATAGGTCATTTAAGAACTGGATAATGATTTGTCTTTATACAAATAATGATTTCAATCTTTCTGTTTTTGTTTGTTTTGTTAAGCATGTGATGTCCTCATACATATGATACATGAAAAATCTACAGTCCTAAAAAAAATGACATTCCTTTCTTTTTCTAAAGTTCATCAAATTTCCTTTATGCTTGTTCTAAGAGAAGCATTCCTACCTTGGACAATAGTTTTTCCTTCCAAGTTGTGTTTAGAATAGTCTCCATCCGTTTCAATTTGTTTCTCTTTAATTGCACGGTCATAAACATGCCATGTGAAAATTTTAGAGTTTAGGAGTTGCCGAAAAAGGAAAGACATTCTTTTTAAAACAGGCCAACAAGGAAAGTAAGACAAACAAATTGAAACAGAGGGAGTAGTTGGTAAGAAGGATCACAACTCTCAATGTTAGCTGATGTGAGTTGATTGTTAACTTGTCTCTAACTATAGATGTCAGTTTCCTACATATGGTATAATGACCTTTTAATGTTTAGGCAATCTTAAGTAATCAATATTGTATCTATTTGCTGTACAAAGTGAGAGGACAATGACTTATGGTGCTTTTAACTCCATACTGCAGGTTCTTTACTCCAACCATTAATTATTTGTCTTCAAGAGGATGTAATTTGCACATATTATGCATGTCAAAAGGTAATGCTCTTAGAATATTTCAATTTATGTTGCAGATGCTAAATCCAAAAATTTCCGTTATGCCTAAGTATTGAGTGGCATGTGTATTTTGATTGCTGACTTGCGGTAAATCTCAAGACGCAAAAAGTAATAAAATGAAATGTTGATTTTTGAACCGGTTGAAATATTTAAGCAATTGATTTTTTAAAGAAGTATGATCCAGTTCAAGCAGTGTTTCTTAAACCTTAGGCTCGCTTTCTGGATTTGACTTATTGCAGCTATTTGCAACTTTTAAGTTTTTAATCGATCAGAACATAAATCACTAGAACTGTTCTTTACTCTTTATCCTAGATAACCAATAGTCTATTACTGATGCTAACTTTCAGTATATTGTTTCTGCTTTGTCGCATTGAATTGAAATATAGGTAATGCAGATGGTATAGGCGATGTCAGAAAAGAAGAACTTTATTTAGCCTCGGTTGTGCTTAAGGTGATGTGAAATTTTATCTGAATAGAAATCTGAGCGATGCATTAATGCTAGTTCTCTGATATTTTATGTTGGCTTTAATGCAATTGTTAGCGCATTCCTCTATTTCTGTGAATTGCTATAACAGAAATTCTTGTAAAATATTGGAGAAAGCAGTTAGATTTCAGTCGTTGATCTTTCTGTTCTCTAATTACTCATGTAGGTTCCACAAAAGCAAGTGAAAGTCCTTGACCATCCAGATCTACAGGTATTCTCATTGTATCAAAATGGTATATCTCTATGTTCTTAAATGTCTAAGTAGAGTTTTAATGCTTATTTCTCACCAGGATGGTTTTGGCAAATCATGGAACTCTAAGTTACTGTCAAAGATTATCAAGGAGGAAATTGTCAATTGTGCAATTGATTTGGTTAGTGATTTCAGTAATTATCTAGTTCACCTTGATGCCTTTTCAAGTAACCTTCAGTAGCTTGTGCTTCTTTGGTTGTTCTAAATTTAAGCTTCCTCCCATTGACTTCATTCTATAAGTGGCTTTCCTACTTCACTATATTAAAATCTTGATCTCAAGGTATATCCTTCGTTTATTTGTTCATTTTTGTTGAATATTAAAGAATATAGTTTTCATTATTCCTATTTCAGTTGCGATGAACTAATTTAATTTGATTTTCCCTCTACTTAATTGAAGTTTATACGGAAGAATCCGTTATGATTTTGTTGGGGCCTAATATTCTGGATTTTAAATCGAGAACCCTAGAAGGATTACATATTCCTTACTCCAGTCTACCAAATATACCATGTACATTTGAAACGAGTGCATAGTTTTAATGTGATAGACTCTTGTATTTATGCAAGCTTTAATGTTTGGTATACTATAGGACAGTCTTTCAGAAAGGAAGCTGAATCTCCCATAAAGAAATATGGGGTAACCTCATGAAGTTCTGATTTAGGGAATAATGCAGTGGTTGCCTATTTCACGGTTCACATTTTAGACAATAATTTTTCGTCAAGAAAATAATCAAGACTGCAAAATGTTGTAAATAAGTGTGGAATTTTATTTCAATACAGTCAATATTACAATCTCAAAAATGATTCTTCTTTTTTCAAATAAATTCAAGGGCCTTCGAGTTTGGTCTTGAACTTTGTGGCTTTTAATCCAAGCGCTTGGAGCTTGATCTTGACCTTTGAATACTTAGAACACTTGAAATACTTGCAACTTATAGAGAAATTTGTACCCTTTGATCTATGAACTGCTCTAGCTTCTACATCGACCCTGCCTGATCAAACACAAGTTATTATCTGCCAAAAATGGGTAGTATTGCTGCCGGTTAAGGATGGAATTGAAGAAATTAGGCTTGAGCATCTCGCAATCATTTATAAGGTTGAGAAGGAAAATTGACGAAAATTCATCATTGATTACTTGAGTATGGCCTATGGGATACTGTTTGAAAATCCCAGAAGAAGTGAAGAACAGAAATCTGTCTTAGTGCACCCACTTCCCTGACTACAGAAATACTTCGTTTAGAAGATCATTCAATGGAGTACTCTTGCAATGTTTGGAGGAGGATGAACCTCTTCAAGCTTTTCAAGAACATATTCTGGGGTGTGGATCACATCAAGTTGCGCTAAAACTCTACTTCCACATAAAACGGATGGGATATTATTGCCAACAATGGTGAAATATTGCTTGGACTATGCTAGAAGATGTAAAACTTGTTAGTTGCATGCAAAATTTTATACATCAGCCACCTGAAGCGTTACACCCACTGTTGCATCTTGGCCATTTGACAATTTGGGACTAGATGGGCAGAAGTTGTTGCTCTCAAGGAAGTAAAGAAAGAAAATGTTGCAAACTCCATTCGAGAAAATAGCATCTATCACTTGGACATTCCTTGTTATATAACAATGGACAATGGCAAGCCATTTTGATAACAAATTGATGAATAAGATTTGTGATATATTTGTCTTCAAGTAGCTTAAGATTTTTTAAGATTTTCCTTTTGTTTGTATTCAATGTGTTGCCTTACGAGTTATTTTTGACCACAGGGAAATGTTATTTATGTCACCTTTCATCTCATGGACACTTGTTTTCCAGGTCATAACTTTTGATAATTATGGAGTCTCAGGTCACTGTAACCATCAAGATGTTCATCAAGGTGTACGGTAAGTTATTCATTATATTCTGGTAGCCGTTGGTAGTAATTTCTGCAAATGAAATTAGCCACCATATTTTGGTATTACTTGGAAGTGTTCTTGCAGATGTTATAAAGAGAGTTATTTAGTATTGACGATTAACAGTGATATTTAATACTAGCAAAGTTTCATAGTGATCCTGTTTCTTTCTAGTTTGATATCTTTTATACATGATTTAGTATTTTAAACAAGCATCATTGTAAGGGATTCTTTACTTTCCTTTTGTTGAATTTATAATTGATTGACATGCCGATAAACATGCCGATAACATGTGTATTTTGTATGACAAGAAAAAGATTGATGAGTTGGACACTCTTCTGTAGATGTAGGACTTCAAAATATATCTTCTTCAAGATTCAACCAATTAACTCAACCGTAATTCTAATTCTCCCATTATGATAGTTAGGTTAGCACGTTTACTTTAGGTCCTATATTCTTGGAGTCTTTTAGTCATATCAGAGATTTATATACCAGTATAAACTACACCCAAGGTTCCCTCATCTGAGATCTCTGGGGAAGAGGATCAAGTTGGCCCTTGCAGAGAATTATAGTAGTTTTTGTCTCTTTCCATTTTTATTGTTTAATAATATCAGCATGAGATGAGCTTCTATAGAGCAGTACGGCTAGTGAGAGTCATACGGTCTATTTGAATTGGATTTAGGATTGAGAGGTGTAATTGTCGTTGTAGTATATTTCTTCTCCCATTAGTTTTCTAGAATTTGGTTTGAAATATGTAATGCTTAAAATTAGTAGCTCATCTTTATAAAATGGTTTCTTTATATGCAGAAAACTATTGCAAGATACTTCACATAAAGAAGTTGAGGCCTGGGAGCTTGTGAGTTCTTTCCTTGTCTCTTTACTTTTGGTACTACTTGTAGACTTCTATTTTAGTTTCTTGGGACTATCATACTACAGCAACAACAACTAAGTGTATGTTTTTTATTTCAAGCAAGCTGAAGTCAACTATATAAATTCTCACCGACCATTTTGTTTCATTTAAGCTCATCTTTTTCTTGGGAATATCATAGCTAGAAAAATTTAGATGCTAATTGTTTTTGAATTTTATGACACTCTGATTGGCATCTTTTCCAATCGTAACTTTATGGTCTAAGGTTTAATGTGGGAGCTTCATGATAAATCTTTTTCAGGTTAGCACTAGCATATTGCGCAAGTACAGTGGACCAGTTGACATATGGTTGTCCCTCCTATCTGCCAAGTTCCATTTTAGTGGAGTGGCACATTGCTTTCTAAACGTACATCCCGGAAGGAGCTTAGCTGCAATGGCTCAGCACAGGAGTCAGTGGGTTTGGTATGTAATATCCTTGCTATTTGTCTTGCTATGATACATGAGTAAGGAAAGTTTGGAAAGAACTAAACGGAAATTTTTATTCCCAGTTTCTCTTTCCAGACATTTTTATTACGTTATTTTATGAGTGTGAGAAGACTGAAGACACATCAAGTATAAAGAAAATTATCTATAAGAGACATCTATAATCCTCTTGATTTTAACTTATCACACAGTAGAAATGTAGTTGCAGAATACACTCTTGGGTCTAATGCATCAGTGCATAACCAGATGCTTATAACGTTTGCTAGACTGCAGTTCACACACAAGCCTTGTCGTAACTGCTTTTGGGTTTACCTTTTCAGGTTTCGCAAGCTATTTGTTTCTTTCTCAAGTTACACATACGTTAACTGCGTTAGGAAGATCAACTAGATACATGTTAAGAGTCGTTGGTTCAGGAAGACACTTGAAAGGAAGATCGACTAGACTAGACGTTAGTTTGGTCCAACAACACTTGAAATGGCAATGGTAAGTAAAACCACTTAGTTTTCGATCATCTAAGTCTCTCTTGTGAGTTCTTCTTTGAAAAACTTCCGATTGATTAAAAATTGGAGAAGTGTTTCAATGTTTTTTTGTGGTTGTAGAATAGTTGGAACTACTTCACTTAATTAAATCGA-TATAAATGATTTGAGCTCTTTTT</genome_strand>
        <mrna_strand>CTGAT-TTTTCTATATTCAGGTCTGCTGGTAAAAAAGTTAAATGGAGTGGCTAGTAATCATCGTTACAGTGGTTGTGCTGTGGGTGGCTTCACTCTTTAAAATTCTTCACGAATCTCTCTCTGCCTCACAAGTTAAAGTTTTGAATGATG....................................................................................................GTGGGGTTTTTTGCAAGAGAAACGTGTTGTTGATTATTGCCCATCCGGATGATGAGTCTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTACTCCAACCATTAATTATTTGTCTTCAAGAGGATGTAATTTGCACATATTATGCATGTCAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGCAGATGGTATAGGCGATGTCAGAAAAGAAGAACTTTATTTAGCCTCGGTTGTGCTTAAG.......................................................................................................................................................................................................GTTCCACAAAAGCAAGTGAAAGTCCTTGACCATCCAGATCTACAG...............................................................................GATGGTTTTGGCAAATCATGGAACTCTAAGTTACTGTCAAAGATTATCAAGGAGGAAATTGTCAATTGTGCAATTGATTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATAACTTTTGATAATTATGGAGTCTCAGGTCACTGTAACCATCAAGATGTTCATCAAGGTGTACG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTATTGCAAGATACTTCACATAAAGAAGTTGAGGCCTGGGAGCTT.........................................................................................................................................................................................................................................................................................................................GTTAGCACTAGCATATTGCGCAAGTACAGTGGACCAGTTGACATATGGTTGTCCCTCCTATCTGCCAAGTTCCATTTTAGTGGAGTGGCACATTGCTTTCTAAACGTACATCCCGGAAGGAGCTTAGCTGCAATGGCTCAGCACAGGAGTCAGTGGGTTTG.....................................................................................................................................................................................................................................................................................................................................................GTTTCGCAAGCTATTTGTTTCTTTCTCAAGTTACACATACGTTAACTGCGTTAGGAAGATCAACTAGATACATGTTAAGAGTCGTTGGTTCAGGAAGACACTTGAAAGGAAGATCGACTAGACTAGACGTTAGTTTGGTCCAACAACACTTGAAATGGCAATGGTAAGTAAAACCACTTAGTTTTCGATCATCTAAGTCTCTCTTGTGAGTTCTTCTTTGAAAAACTTCCGATTGATTAAAAATTGGAGAAGTGTTTCAATGTTTTTTTGTGGTTGTAGAATAGTTGGAACTACTTCACTTAATTAAATCGAGTATAAATGATTTGAGCTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11SLm0052K14-Gnxja/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324530" ref_strand="+" ref_description="SGN-U324530        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam profile: PF04765 protein of unknown function (DUF616) | chr4:6083710-6088131 FORWARD | Aliases: T25P22.70, T25P22_70(evalue: 3e-120, score=428) genbank/nr: gi|8778248|gb|AAF79257.1| F12K21.12 [Arabidopsis thaliana] (evalue: 4e-120, score=434)">
      <seq>ctcccgtatatcaaagaaaaatgtttgcttcgttatgtttgtggatgaagttactctaaaaactcttacagctgaaggtaagatgccagacagcatgggctttgtaggtttatggaagatcgtagttgtaaagaatcttccattttctgatatgcggagagtgggaaagataccaaagttattgtctcatcgactctttacttcagccaggtattcaatatggttagatagcaagcttcggctgcagcttgatcccctactcatattggagtactttctgtggcgtaaaggttatgaatatgcaatttccaatcactatgacaggcattgtgtgtgggaagaagtagcccaaaacaagaaacttaacaagtacaatcatactgtcatagatgaacaatttgcattttaccaggctgatggattgcaaagatttaatgcatctgatccaaacaagcttcttcacagcaatgtaccagaaggatcttttattgtgagggctcacacaccaatgtcaaacttgttttcttgtttatggttcaatgaggttgaccggtttactccccgtgatcaactgagttttgcatatacatactataagttgagaaagatgaacccagacaaacccttttatctcaacatgttcaaggattgtgaaaggcgaaagatagctaagctgttccgtcacagatcagatgagcagaggaatattctctctcaatctgagacagagtaaaagctgagtgactcctggttttggctgatgattcaatttttttgttatacgcgtcactatattgtacttgcttgctggaaagagggtcatcgtgccatagccattgtgattgtgtctgttgtacattaccaatattctctagagaaagtgatacacatcccagccctatcgattcaaagcaacacaaggtggattctgctggctcatcatctcatctttctggtgcaaagaacatactaccaccattacagcttccattctattaatttcattgccttgaccaactcctagtgttaaattttccattgtatctacatgagttggtgaagaaaatacctgatactatatgtattctttttctatgaagcagggtgccaatttattgtttctaatatttggaccaattgatactatttactcattcaatttatagtcttatcatgataattccaactttaaagtggctttaaaaaaaaaaaaaaggggccccccccgggggggaaccccaatttttgtccccttttctgggggggggccccggcccccatttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11SLm0052K14-Gnxja/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11SLm0052K14.1" temp_strand="-" temp_description="C11SLm0052K14.1  AC220061.1 htgs_phase:3 submitted_to_sgn_as:gi|170933591|gb|AC220061.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11SLm0052K14, complete sequence">
        <position start="22987" stop="19712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22687" g_stop="22478" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22477" i_stop="21194" i_length="1284">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21193" g_stop="20937" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="467" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20936" i_stop="20848" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20847" g_stop="20669" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="646" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20668" i_stop="20584" i_length="85">
            <donor d_prob="0.521" d_score="0.98"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20583" g_stop="20014" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="1200" r_length="554" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11SLm0052K14.1" gen_strand="-" ref_id="SGN-U324530" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>1216</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11SLm0052K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22687" e_stop="22478"/>
          <exon e_start="21193" e_stop="20937"/>
          <exon e_start="20847" e_stop="20669"/>
          <exon e_start="20583" e_stop="20014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCGTATATCAAAGAAAAATGTTTGCTTCGTTATGTTTGTGGATGAAGTTACTCTAAAAACTCTTACAGCTGAAGGTAAGATGCCAGACAGCATGGGCTTTGTAGGTTTATGGAAGATCGTAGTTGTAAAGAATCTTCCATTTTCTGATATGCGGAGAGTGGGAAAGATACCAAAGTTATTGTCTCATCGACTCTTTACTTCAGCCAGGTAACTGGAATTACAATCTTGTATATTATTTGTTTGTGGTATGCTACTGCTTATATTCTTCTTATATGATACCATGCTATGGTTAGTTAGCACTCAATATTCACTTCCAATCAGGGGTTTACCAAATCAAAAAAATAAAAGAACAAAAGAAGGAAAAAACAAATTCGTTCTCAATGCAATTAGTTGTCTGCTAGCTTAATATTTAATTTAAGGGACATCATTTGTATTTGGTACATTCTCAGCATTAGCTTCATGCTTCCTGCAGTGCAGCAAAATACCAGTTCCATTAGCATCTTTTTTTATCTAGTTGAAAAATTGTTGCGTGCTTTTTTCGAATATTAGATTGAGGATAGCTTCTTATGATGGTTTGGTTTTTAGTGGGGATTAGTCTCACTGTAGTGGCAGAACTTCAAGTAAATAATTTCTCTTTTGGGTTTAATGTTTTTTCACTTTGAGTGGTGCAGCAATGTGTTGTTTTCACCATTTAAAAGATATTGTGTAGACAGAAGTCAACCGATGAGTGCAAATGTACTAGTTTCTGCAAATAATCAAAATGCTAAGATGGTACTGAATAAGAGACTGTTGGAATTTGGTCTACTATCGATCGGCAATAATTACCCTTTCCCTTCTGTTTACTGGGGACTAAACTATATTTGGAAAAGTCAATTATGTGAACTGGCAATTCCATAACTATAGTTCAGAGGATTCCTAGTGCTAATTTTGAATCAACTCATTGGTGCTCTCAACTTTGGTAGCTATTTTTTTAGGATTCCATAATTTGCCTGGGTTTCTGCTTTCCCTTGTTTGTGTGGTGGTGTTGGGAAAGATACAACCTAAAATGTTAATGACACACATCTCTCAGCCTTCATCTTACTGCTTGCCTACCCCTTTTCTTTCCTTTCCATATTTATCCAACATGTAGTGGATACCCACTGTCATATAATTTACTCCACATTGCATGTAATAGAATGCAGTATTATCTCTGAATGGAGTAGCAAAGGGTGAATGATGAGGTCATCTAACCCACTAGTGATACTGTTGTAAAATGCTCTTTTATCCTCTCTTTTGGGCCTTCCATTTCTATGCATATAATTGTTTGCTTGAACTTTCTAAATTTCTGTTTGTTTGTTAAAAAGTTGAGATGCTTGCATGTGAATTGCGTACTGAACCACCTCTCTCTAAAGAAAGAGGAGGTGGAGGGGAGAATTTCTATCGTAGTAGCTTATAATTTTATTTTATTTTTTCAAAAACATTTTACAAGCATTTTCATTTGAAATTATGCAGGTATTCAATATGGTTAGATAGCAAGCTTCGGCTGCAGCTTGATCCCCTACTCATATTGGAGTACTTTCTGTGGCGTAAAGGTTATGAATATGCAATTTCCAATCACTATGACAGGCATTGTGTGTGGGAAGAAGTAGCCCAAAACAAGAAACTTAACAAGTACAATCATACTGTCATAGATGAACAATTTGCATTTTACCAGGCTGATGGATTGCAAAGATTTAATGCATCTGATCCAAACAAGCTTCTTCACAGCAGTACGTTCACTGTTCTATATTTATTTTCTTGCAATACCTTTCTGCTTCTGTGTTCTTATTGGCTAAATGTCATTACATTTTTCTGACAGATGTACCAGAAGGATCTTTTATTGTGAGGGCTCACACACCAATGTCAAACTTGTTTTCTTGTTTATGGTTCAATGAGGTTGACCGGTTTACTCCCCGTGATCAACTGAGTTTTGCATATACATACTATAAGTTGAGAAAGATGAACCCAGACAAACCTTTTTATCTCAACATGTTCAAGGTGAGAAATTTAAGTTCCTTCCAAGTGCAACTGTAGAGATAGACAACCTTCCCTTTTCGTCTAACACTTAGTATGTGCATTGTAGGATTGTGAAAGGCGAAAGATAGCTAAGCTGTTCCGTCACAGATCAGATGAGCAGAGGAATATTCTCTCTCAATCTGAGACAGAGTAAAAGCTGAGTGACTCCTGGTTTTGGCTGATGATTCAATTTTTTTGTTATACGCGTCACTATATTGTAGTTGCTTGCTGGAAAGAGGGTCATCGTGCCATAGCCATTGTGATTGTGTCTGTTGTACATTACCAAAATTCTCTAGAGAAAGTGATACACATGCCAGCCCTATCGATATAAAGCAACGCAAGGTGGATTCTGCTGGCTCATCATCTCATCTTTCTGGTGCAAAGAACATACTACCACCATTACAGCTTCCATTCTATTAATTTCATTGCCTTGACCAACTCCTAGTGTTAAAGCAGCATCCTATTAATTTTCCATTGTATCTACATGAGTTGGTGAAGAAAATACCTGATACTATATGTATTCTTTTTCTATGAAGCAGGGTGCCAATTTATTGTTTCTAATATTTGGACCAATTGATACTATTTACTCATTCAATTTATAGTCTTATCATGTTTAATTCCAACTTTTAAGTGGCTT</genome_strand>
        <mrna_strand>CTCCCGTATATCAAAGAAAAATGTTTGCTTCGTTATGTTTGTGGATGAAGTTACTCTAAAAACTCTTACAGCTGAAGGTAAGATGCCAGACAGCATGGGCTTTGTAGGTTTATGGAAGATCGTAGTTGTAAAGAATCTTCCATTTTCTGATATGCGGAGAGTGGGAAAGATACCAAAGTTATTGTCTCATCGACTCTTTACTTCAGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCAATATGGTTAGATAGCAAGCTTCGGCTGCAGCTTGATCCCCTACTCATATTGGAGTACTTTCTGTGGCGTAAAGGTTATGAATATGCAATTTCCAATCACTATGACAGGCATTGTGTGTGGGAAGAAGTAGCCCAAAACAAGAAACTTAACAAGTACAATCATACTGTCATAGATGAACAATTTGCATTTTACCAGGCTGATGGATTGCAAAGATTTAATGCATCTGATCCAAACAAGCTTCTTCACAGCA.........................................................................................ATGTACCAGAAGGATCTTTTATTGTGAGGGCTCACACACCAATGTCAAACTTGTTTTCTTGTTTATGGTTCAATGAGGTTGACCGGTTTACTCCCCGTGATCAACTGAGTTTTGCATATACATACTATAAGTTGAGAAAGATGAACCCAGACAAACCCTTTTATCTCAACATGTTCAAG.....................................................................................GATTGTGAAAGGCGAAAGATAGCTAAGCTGTTCCGTCACAGATCAGATGAGCAGAGGAATATTCTCTCTCAATCTGAGACAGAGTAAAAGCTGAGTGACTCCTGGTTTTGGCTGATGATTCAATTTTTTTGTTATACGCGTCACTATATTGTACTTGCTTGCTGGAAAGAGGGTCATCGTGCCATAGCCATTGTGATTGTGTCTGTTGTACATTACCAATATTCTCTAGAGAAAGTGATACACATCCCAGCCCTATCGATTCAAAGCAACACAAGGTGGATTCTGCTGGCTCATCATCTCATCTTTCTGGTGCAAAGAACATACTACCACCATTACAGCTTCCATTCTATTAATTTCATTGCCTTGACCAACTCCTA--G-T------G--T--TA--AATTTTCCATTGTATCTACATGAGTTGGTGAAGAAAATACCTGATACTATATGTATTCTTTTTCTATGAAGCAGGGTGCCAATTTATTGTTTCTAATATTTGGACCAATTGATACTATTTACTCATTCAATTTATAGTCTTATCATG-ATAATTCCAACTTTAAAGTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11SLm0052K14-Gnxja/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342576" ref_strand="+" ref_description="SGN-U342576        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: EMB2756 | expressed protein, contains Pfam profile PF04765: Protein of unknown function (DUF616); expression supported by MPSS | chr1:12646794-12652624 REVERSE | Aliases: F12K21.12, F12K21_12, EMB2756, EMBRYO DEFECTIVE 2756(evalue: 2e-56, score=211) genbank/nr: gi|15218687|ref|NP_174715.1| hypothetical protein [Arabidopsis thaliana](evalue: 2e-54, score=211)">
      <seq>gtacagggacttttccaataaggaatcctcttcaagttctcatcaccaaaaatctaacacaaactctggacgtgtcagcttcattgatggtcacccctcaaagaagtcttcgtcagaaaagcggccagtacccagaaggaagtcaaggaagcatgcttgtgagatgaaaattttgaatgctagtgcccttcttgtggaacctctggaaagtcgaaaattttcaaggttttcgttgcagtacgcggaaacagaggacaaaccttttgacgatgcaaactgggaacctagattttctgggcatcaaagtatggaagaacgggaagaatcttttcttgcacgcaatcaaaaaataaactgtggttttgttcgaggccctgaagaaactccaagtaccggatttgacttggcagaagatgacgcaaaatacattagcagttgtcacattgctgtagcttcatgcatcttcggaaattcggatcgcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11SLm0052K14-Gnxja/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11SLm0052K14.1" temp_strand="-" temp_description="C11SLm0052K14.1  AC220061.1 htgs_phase:3 submitted_to_sgn_as:gi|170933591|gb|AC220061.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11SLm0052K14, complete sequence">
        <position start="31483" stop="28849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31183" g_stop="31029" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31028" i_stop="29479" i_length="1550">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29478" g_stop="29149" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="485" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11SLm0052K14.1" gen_strand="-" ref_id="SGN-U342576" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11SLm0052K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31183" e_stop="31029"/>
          <exon e_start="29478" e_stop="29149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACAGGGACTTTTCCAATAAGGAATCCTCTTCAAGTTCTCATCACCAAAAATCTAACACAAACTCTGGACGTGTCAGCTTCATTGATGGTCACCCCTCAAAGAAGTCTTCGTCAGAAAAGCGGCCAGTACCCAGAAGGAAGTCAAGGAAGCATGGTAACATTATTTCCTATTTTTGTTGGTGCCTGGTGACTTTATTTTTATGATTATTTTGTCTTCTGACAATTTTGTATTCCTCGAGTTAACTTGATGTCTGAACTTTTTGATTTTAACATGGACAGAGAAGACTGAAAAGATGTGCCTGGGGACATTGGAACATTTTCTTATGCGAACTTGCTTAAGCGCTCTTTGTATGATTTACCTAATAAAATTTGCTCCTTATTACTCTCAGCCTAAAGAAAAGGCACTTTTGATATTCAACCTCTACATGCTGGATAATTAATTTAGAAGTCTGTCTGTAAAAATAGAGACTTGTTCTGGGATGCAAGTGATCCTGATTCACCTATATATATTTATATGTATAATTGATGAAGTAAATAAGAAGGATTAAGACAACCAGATTCACTAAATAATGTAGTATATCATACTTAGGAATAGTTCTCATAAAATATAACTACAATTTGAGCTTTTGTGATGAGGTTAATATAGGCTAGTCATGGATATTTTGCTAGATTAGAGAAAGATTTTAGTTGAGTCGATGTATATTATTGGGAAGTTAAGCTTAGCTGAGCATCTTTATGTAAAGCATATTGAGATGCTAATGATAGTAGGAGGGATACTGTTAGGGGTTGTTTGAGCGTATTAGCAAAAATAATGCATGCATTGATACACTTATTCATGCTAGTGTAACTAATGCTCTATTGTGTATTAGGAGTGTATTACTAATACCATGAATTTCTAGGTATTAGTAATGCAAAGGAATTTAATACATGCATAAGCATGGTTAAAAACCTGATTACCCCTCTAAAGCACTATTACATCTTTTCCACCATAATTGTGAAGGATAACTTTGTAAATCATATTTTTATACAATGCATACTATTTTTAATACATCAAACCAAACAATGCATAAGAAATAATTTACGCATAACTAATGCAAGCATAACTAATACAAGCATTACTAATACACTCTATTGAACAATATTTTTATACACTTTACCAAACGACCCCTCATTAATTTATATAATAATTATGAAGTTAGGTATTAGAGCATGTTAGTTGTAAAAAAAGTTAGGGATTAGAGTCTTCCCGAATCTCTAAAAATCTTCCCCCAAAAGAAAGGTATTAGAGTAGAATATTGTATGATAAGTTGCGTCTAAGAAGCAGAGTGATGTTGCTCAAAATCTTTTATTTTAGCCATCTCACTGTACTCACTTTCCAGTCTGCTAATCTGCTAGCTAAAAGTGTGATTTCTGCCTTGCTCGTCACAATCATCATGGTCTGGTTCCGTAGAGTATTAGCAGTCTTTCATGTCAAGCATAAAACTTCGGATCTTGACAAGGCAGCATGCCAGGATTCAAGCTCTTTTTGTCATTTGTATGAAACATTGAATCTCAGATTTATGGATTTCCAAACATCAGGAAATTTCTGTAACTTCTTGCATTTTGCAATTTGATTAATAGAATGAGTTTATGTGCAAAATCTTGGAGATTAGCCCACCTCACTCCCTTACTCAGAACTTAAGTAATCATGCTTTACATTTGCAGCTTGTGAGATGAAAATTTTGAATGCTAGTGCCCTTCTTGTGGAACCTCTGGAAAGTCGAAAATTTTCAAGGTTTTCGTTGCAGTACGCGGAAACAGAGGACAAACCTTTTGACGATGCAAACTGGGAACCTAGATTTTCTGGGCATCAAAGTATGGAAGAACGGGAAGAATCTTTTCTTGCACGCAATCAAAAAATAAACTGTGGTTTTGTTCGAGGCCCTGAAGAAACTCCAAGTACCGGATTTGACTTGGCAGAAGATGACGCAAAATACATTAGCAGTTGTCACATTGCTGTAGCTTCATGCATCTTCGGAAATTCGGATCGCTTGA</genome_strand>
        <mrna_strand>GTACAGGGACTTTTCCAATAAGGAATCCTCTTCAAGTTCTCATCACCAAAAATCTAACACAAACTCTGGACGTGTCAGCTTCATTGATGGTCACCCCTCAAAGAAGTCTTCGTCAGAAAAGCGGCCAGTACCCAGAAGGAAGTCAAGGAAGCATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTGAGATGAAAATTTTGAATGCTAGTGCCCTTCTTGTGGAACCTCTGGAAAGTCGAAAATTTTCAAGGTTTTCGTTGCAGTACGCGGAAACAGAGGACAAACCTTTTGACGATGCAAACTGGGAACCTAGATTTTCTGGGCATCAAAGTATGGAAGAACGGGAAGAATCTTTTCTTGCACGCAATCAAAAAATAAACTGTGGTTTTGTTCGAGGCCCTGAAGAAACTCCAAGTACCGGATTTGACTTGGCAGAAGATGACGCAAAATACATTAGCAGTTGTCACATTGCTGTAGCTTCATGCATCTTCGGAAATTCGGATCGCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11SLm0052K14-Gnxja/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328980" ref_strand="+" ref_description="SGN-U328980        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, hypothetical protein F6E13.15 - Arabidopsis thaliana,PIR2:T00682 | chr4:6076989-6078959 REVERSE | Aliases: T25P22.60, T25P22_60(evalue: 2e-57, score=219) genbank/nr: gi|15810253|gb|AAL07014.1| unknown protein [Arabidopsis thaliana](evalue: 8e-56, score=220)">
      <seq>gttggtcttcctgtcccaattgagtgtagagctcagccgtttcaacattttcttgtgcttcccattcatttcttgaagcagagctggaatctgaattctgagggatgctaggaaaatcatttgctactcctgtgctgacctttaactctgcatcatgcttctcctctcctggttatgattccgtctcaacaacagctaacactctagtagggtatgtaaattgctcgagtagcattacatttaatgttactaggggatcttggacgtccaattatccatccaagaaatggacgttgcattcagcagctactgacaatatagtattaactgaagaagagaagaaaacgtggaactatagcagacaagctctttctgcattaaaatttagcccagaggaagaagacaaaatattaggaaaagcatttggccacatacattcgccttactggtatgaagaacggaagaaagaggttccacgactagaagttgtgaacgagatactggattatctaaggagtttaagccttactgatgatgatctcactaaacttgtcaagaaattcccagaagttcttggatgtagccttgaagatgaaatgaaaaccaatgtcgaaattctggcaaaacaatggggaattgaaggtaaaactctgagaaatttgcttcttcgaaatccaaaagttttaggctacaatgtcgattgcaaaggtgattgtgtggctaaatgcactcgctgttgggctcgattctagctgcattcttgtttttcatcctctatacctttctttatgtataactttcgtcaaccattttatctaattattcaatatcgaaagtaaattcatacaattctgtattgcactgatatgtgactcaagtttagatcacaaaggatgttacagagagaatgaatgaaaaaaatcagagcaatttttataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11SLm0052K14-Gnxja/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11SLm0052K14.1" temp_strand="+" temp_description="C11SLm0052K14.1  AC220061.1 htgs_phase:3 submitted_to_sgn_as:gi|170933591|gb|AC220061.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11SLm0052K14, complete sequence">
        <position start="38876" stop="44219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39175" g_stop="39276" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39277" i_stop="41007" i_length="1731">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41008" g_stop="41078" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="173" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41079" i_stop="43152" i_length="2074">
            <donor d_prob="0.747" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43153" g_stop="43919" g_length="767"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="939" r_length="766" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="940" polyA_stop="951"/>
      <MATCH_line gen_id="C11SLm0052K14.1" gen_strand="+" ref_id="SGN-U328980" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>940</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11SLm0052K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39175" e_stop="39276"/>
          <exon e_start="41008" e_stop="41078"/>
          <exon e_start="43153" e_stop="43919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGTCTTCGTGTCCCAATTGAGTGTAGAGCTCAGCTGTTTCAACATTTTCTTGTGCTTCCCATTCATTTCTTGAAGCAGAGCTGGAATTTGAATTCTGAGGTAGACTTCTAACTTTTCCTTTGTAGTATTTGTTTTGGAGTTTTGGGTGTTCCTTTATTTGGGTTGGATTGAACCCTTCTATGCCTTGGAAGCTTTCTGCTTGTGAATTTGTTCTCCAATTCCTTTTAGTAAGTTGTTTTCCTCATATATTGATTGTTTATCTTTGGACAAGGTTGCTGCTTAAAGTTTGTGCATTTGGGTTTCACTCAAATATTTTAGGGCACTTGTTTAACTGAAAGTTGGGTTGATGCATAAGGAAATTGGTAGGGTACAAGAAGATGAAAACAAGGTTTAATCTTGGTTATGTATTCCGTTCCGAATAAATAACAAGGTACTTCGGTTAGGAGTGGGAACAAGTTATCGTGGGATTAGTTATTCCACCGTTTACATGGGATAACTTATTCCATTACTAAAGTATGAATGGTGGGATAGATTATCTGGAAAAAGGACAAATATACCTCCGAACTATTGTAAATGGTACGTAGATACTCTCCGTCATACTTTTGAGACATTGATGTCCCTGTCGTCCAAAAACTAGAGCGTACATGCATACACTCTAACGAAAGACTAAACAGGGACACACGACACAATCTTATCCATCTATCCGATGTCAGGTCGTTGGATAAGATTATGACACATGTATGTCCGTTAGTATAAAGAGTATATATACGCTGGTTATTTGACAGTAGTATCCCTAAAGTATGACGAAGGATATCTGCATACCATTTACGATCAAAGTTCGGGGGTATATTTGTCCTTTTTCCCTAAATAATCCCATGACGGCCTAATACCTCCAACCAAACACAAGATAAGATATTACTATACCTTATACCTCACACTATACGACTCCTAATAGTTTAAGAGTGAAAGTTTCTGAACCATTCATGAACATTGCAGTGAAAATGATTATAATGTGAGAAGGTCAAATGATATACATAGACAGACACTAAGCAAATGCTGATTGTGAGTTTGAGTTATTTGACATGTGAGTTATCGGGGGAAAAATTGAGTTAGAGAGAAATTAAGTATTACTACTTGGTATCAAATTAGAACTCATGTATGTATGTATGTATGTATGTATAACAAGTGGTTATTAAGAAAAGACGAAAGAAAATTGGATAATCGACTTGTCATCATTCCAAATAAGAGTAGTTGTTGCAGTACTCTGTGAAGAGGATTAATTGTATAAAGGTTGGGATAAAGTGGTGAGTTTGTTCCAAAATAGTTTACAAAAAATATAAATCTTTGGTCTCATTCTCAACACTGAGATATATACCACAAAACTTATAAGTAGATGACTTGATTCAAAAGGATTGTCTTGGTAATGTGGATTCTGTATGTTATGTTTCTTGATTCTATGTACCTGATTGTAAGTGCTGCAATACCATGATACAACGATGATTCGACTTGTTCTCATGTCATTTATTAGAGAATGTTATTTTATAGTGGGTCCTTACTTTATCCAAACAAATTCAATAGTTCTTCTATTGCTGCTGGAAAGTACAAATTCAGTAGTTGTTTTATACTCTATTTTTTATAAGCGAGATATAGGTTTTGGATTTAAGCAGTTTTATGGCATGAAAATTTCAGTTTCTGAGTGCATTTCTGAAGTCCCACATTGTTACATGTCCTACCTTTGTGTTCTATATGGGCTGCGAAAAGTTCGACGTTTCTTTTAGGTCTTCGAATGTCTTCCATATCTACTCATTCAGCCTGTGCTTTATGGTGCAGGGATGCTAGGAAAATCATTTGCTACTCCTGTGCTGACCTTTAACTCTGCATCATGCTTCTCCTCTCCTGGTGTGAGTATAACTTCTTACATTTTTGTAGTGGCCGTTGAGTGGTTAGATTCGTCACAAGGGGTGGAATTTGATCCCAAGATTCATCAGTTTATATTCTCTACTTCTTACTGCTTATATGAATGAGATTTTTCAGCATTAATAAAATTATTTACCATATCAAAAAAGATTCGTAAGTTATGGCTGGGGTCATTAGATCCAAATTACTATGCTAATCACGTCATGTTCTATTTCTTTCTTTTATTACTCCGTCCTACTTTATGTGACGATACTAGTTTTATACAGAGTAGACAATGCTAATTTGTCTTATATAATATAATAGTAACAAGGATCCTTCAAGGACATCTGATAGCAAAGTTATGCTTATATCAGTTGTAATGAGAGGATATATTACAATATCGGTTGGAAAATAGATACAGAAAACATCACATCAATGGTAATAGTTAAATAACTTTTATATCCTGAAAGTTGTGTATAATAATTGTATTAATGGAGCACCGAGGGTGTTGTATACTAGTCAATGAAGTGGGTAATAATCATGAGAGAGTAGGGTTCAAATGTCAGCACACACAAAAATGCTATGTGTTTTTTCCCATTAGTCTAAGTTTTGGGGGTACAGAGTGAACGATATATGTACTTGGAGATAACAGGTATCCAATGGAATAGTCGAGGTGTGCCAAGTGGTCTGGAACTGCTACAAGAGAAAGTATTAATGGAATGGAGTCAAATAATTTGAAATGAACAAAATTGCAAGTGTGTCATACAAATTGTAATTGAGAGTTTTCATTTTTAAAGTTATGAATCAATTAACTAATTTTATCTTTGTTATCACTCATACTTGTGACTTACAAACTCGGTGAACTTGTAATAACAACAACAACATACCCCGTGTAAGCTCAGAAAGTGGGGTTCGGGGAGGGTAAAGTGTATGCAGACTTTATCACTACCTTGAAGGTAGAGTAATGTTTCCATTAGACCCTTAGTTCAAGGAAAAAAAATCTAAAACAGTATAGAGAGATAAATGACGGAAATGAAGAAAGTCATGGCAAATATTATAAGACAACCTGACAAATCATCCTAAACAGTAGTCATAATAAGATAAAACAATAATCGAAGGGTAAAAAACCAGATATAATAACCAAACTCAAAGAAAAAGAAACTACAAGAGTAATACTATCACTAATAGTACGACTAATAGTATAAAAGAATAAGCGAGACAATGCTCAACTATCTAACTAACTTCCTACCCTTATCCATGTCCTCTAGTACCTCATATCTAAGGTCAGCTGAAGCTGCGTTATATCCTGGCTAATCACCTCTCTGCATTACTTCTTCGGCGTACCGCCACCCTTCTATCCATAGCCAAACTTCTGTGAACTTGTGATGTTACAAAATCTTCAGCTAGTCTATTTTTGTGGAACATCTATGAAATGAATTATAGGGAAGTAAATAGCAATTTTGTGACATGTTTTGGTATGAGAAGGGGCTGAAAAGAGCAGAATAAACAAATTTTAAAAGGTGTTTTATAGCCGACCTCAACTTATTTGGGAATGAGCGTAGTTGATTAATGGATCAATTGATTCTTTCAGATTTGAACCTCAGAAAGAATGCATGCTGTTAAGTTGAGTTCTTTTTTTTGTTGTTGGCCTTACATTTTAAAACCAGTCTCTCAGACTTGAAGTTTGTCCAGCCAGTAGTTAAGATATAGTCTAAGCACTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCAGGGTTTTACCCTGTGCGTACCCAAAAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCATCAAAAAAAAAGAAAAGAAAAAAAAAAGATTCAGTCTAAGGACAGATCATTACGCAGGTAATGTTAATTTAATAGCTGTGTGGTTGATGATTTTTAGCGAATGATTATCTGAGGATTCATATATCCGGACAACTAGTTTTTAGTCGTGGAATAGTTGGTTTTCTTGATAACGGTAAATCTTTCATTCTATGATGTTCAGTCTTCTATATAACCCTAATATATTCTCTGGTGAAAACATAGCTCATACTTTCTGTTTCTTACTCTACAGTGTGAGTCCATCTCAACAACAGCTAACACTCTAGTAGGGTATGTAAATTGCTCGAGTAGCATTACATTTAATGTTACTAGGGGATCTTGGACGTCCAATTATCCATTCAAGAAATGGACGTTGCATTCAACAGCTACTGACAATATAGTATTAACTGAAGAAGAGAAGAAAACGTGGAACGATAGCAGACAAGCTCTTTCTGCGTTAAAATTTAGCCCAGAGGAAGAAGACAAAATATTAGGAAAAGCATTTGGCCACATACATTCGCCTTACTGGTATGAAGAACGGAAGAAAGAGGTTCCACGACTAGAAGTTGTGAACGAGATACTGGATTATCTAAGGAGTTTAAGCCTTACTGATGATGATCTCACCAAACTTGTCAAGAAATTCCCAGAAGTTCTTGGATGTAGCCTTGAAGATGAAATGAAAACCAATGTCGAAATTCTGGAAAAACAATGGGGAATTGAAGGTAAAACTCTGAGAAATTTGCTTCTTCGAAATCCAAAAGTTTTAGGCTACAATGTCGATTGCAAAGGTGATTGTGTGGCTAAATGCACTCGCTGTTGGGCTCGATTCTAGCTGCATTCTTGTGTTTCATCCTCTATACCTTTCTTTATGTATAACTTTCGCCAACCATTTTATCTAATTATTCAAAATCGAAAGTAAATTCATACAAGTCTGTATTGCACTGATATGTGACTCAAGTTTAGATCACAAAGGATGTTACAGAGACAATGAAATGAAAAAAATCAGAGCAATTTTTATAA</genome_strand>
        <mrna_strand>GTTGGTCTTCCTGTCCCAATTGAGTGTAGAGCTCAGCCGTTTCAACATTTTCTTGTGCTTCCCATTCATTTCTTGAAGCAGAGCTGGAATCTGAATTCTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCTAGGAAAATCATTTGCTACTCCTGTGCTGACCTTTAACTCTGCATCATGCTTCTCCTCTCCTGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGATTCCGTCTCAACAACAGCTAACACTCTAGTAGGGTATGTAAATTGCTCGAGTAGCATTACATTTAATGTTACTAGGGGATCTTGGACGTCCAATTATCCATCCAAGAAATGGACGTTGCATTCAGCAGCTACTGACAATATAGTATTAACTGAAGAAGAGAAGAAAACGTGGAACTATAGCAGACAAGCTCTTTCTGCATTAAAATTTAGCCCAGAGGAAGAAGACAAAATATTAGGAAAAGCATTTGGCCACATACATTCGCCTTACTGGTATGAAGAACGGAAGAAAGAGGTTCCACGACTAGAAGTTGTGAACGAGATACTGGATTATCTAAGGAGTTTAAGCCTTACTGATGATGATCTCACTAAACTTGTCAAGAAATTCCCAGAAGTTCTTGGATGTAGCCTTGAAGATGAAATGAAAACCAATGTCGAAATTCTGGCAAAACAATGGGGAATTGAAGGTAAAACTCTGAGAAATTTGCTTCTTCGAAATCCAAAAGTTTTAGGCTACAATGTCGATTGCAAAGGTGATTGTGTGGCTAAATGCACTCGCTGTTGGGCTCGATTCTAGCTGCATTCTTGTTTTTCATCCTCTATACCTTTCTTTATGTATAACTTTCGTCAACCATTTTATCTAATTATTCAATATCGAAAGTAAATTCATACAATTCTGTATTGCACTGATATGTGACTCAAGTTTAGATCACAAAGGATGTTACAGAGAGAATG-AATGAAAAAAATCAGAGCAATTTTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11SLm0052K14-Gnxja/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312594" ref_strand="+" ref_description="SGN-U312594        Tomato 200607 #1 [17 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:3830613-3830972 REVERSE | Aliases: F7B19.23, F7B19_23(evalue: 2e-31, score=133) genbank/nr: gi|14586969|gb|AAK70407.1| pol polyprotein [Citrus x paradisi](evalue: 2e-61, score=239)">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctctattgtggaaggactttaaaaactacttgaaacacaaacgcaaggagatgattgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11SLm0052K14-Gnxja/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11SLm0052K14.1" temp_strand="+" temp_description="C11SLm0052K14.1  AC220061.1 htgs_phase:3 submitted_to_sgn_as:gi|170933591|gb|AC220061.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11SLm0052K14, complete sequence">
        <position start="76590" stop="78405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76889" g_stop="78105" g_length="1217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1222" r_length="1222" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11SLm0052K14.1" gen_strand="+" ref_id="SGN-U312594" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>1217</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11SLm0052K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76889" e_stop="78105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTCAAATACTGAAAATATTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTT-TTAAGTTCGTTGAAGTTAAAGAAGTCTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTTTATATT-TATTCTGTTTCATCTTATTTCTGTTTCTGTTTATTAATCTTATAAATACAA---ACTGTAAGAATAACAATCTTAAG-AAATTTA-ACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTCAAAATTCATTCGATTAACAATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAATAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGTCATTTGTGACAGGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTAAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGAACACACTCAGATTTTTTGTGTAAAAATTATATCTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCCAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCTGGAATGAAGAAATTCATTGTGGCAAAATTTCTGAACTATAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTACAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGACTGTTGA</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACA-GAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGATTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11SLm0052K14-Gnxja/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324842" ref_strand="+" ref_description="SGN-U324842        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc knuckle (CCHC-type) family protein, contains Pfam domain, PF00098: Zinc knuckle | chr2:3820372-3820734 REVERSE | Aliases: F7B19.19, F7B19_19(evalue: 4e-09, score=58.5) genbank/nr: gi|53689765|gb|AAU89775.1| pol polyprotein-like [Solanum tuberosum] (evalue: 2e-102, score=374)">
      <seq>taaggttgagaatcgaagaggataataaggctgcagaaaagaggtcacgtggtaattcagcaatatctggagtaaattttgttgaagaagattccacaaaattcaagaaaagaaagaaagcatctggtccaaaacgcaatcctcctaagaagaaattcaatggaaactgctttaattgtggtaaacatggtcatagggctaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttttgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttctttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11SLm0052K14-Gnxja/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11SLm0052K14.1" temp_strand="+" temp_description="C11SLm0052K14.1  AC220061.1 htgs_phase:3 submitted_to_sgn_as:gi|170933591|gb|AC220061.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11SLm0052K14, complete sequence">
        <position start="77817" stop="79125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78117" g_stop="78825" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="710" polyA_stop="744"/>
      <MATCH_line gen_id="C11SLm0052K14.1" gen_strand="+" ref_id="SGN-U324842" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11SLm0052K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78117" e_stop="78825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTTGTAATTCAGCAATATCTGGAGTAAGTTTTGTTGAAGAAGATTTCACAAAATTAAAGAAAAGAAAGAAAGCATCTGGTCCAAAAAGCAATCCTCCTAAGAAGAAATTCAATGGAAATTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAAGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGATGATTTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGATTATGGCAAACTCCGTTGTTGCAAAGATGGAAGAAACTCGCAAAGTCCTATTAAAGATTACATCAGGCAAGGTGGTGACTTTGAATAAGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCCGTTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTA</genome_strand>
        <mrna_strand>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTCAAGAAAAGAAAGAAAGCATCTGGTCCAAAACGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11SLm0052K14-Gnxja/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333293" ref_strand="+" ref_description="SGN-U333293        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative, similar to endoxyloglucan transferase EXGT-A1 GI:5533309 from (Arabidopsis thaliana) | chr4:7631532-7632867 REVERSE | Aliases: F25G13.180, F25G13_180(evalue: 2e-39, score=159) genbank/nr: gi|7268010|emb|CAB78350.1| endoxyloglucan transferase-like protein [Arabidopsis thaliana] >gi|5123949|emb|CAB45507.1| endoxyloglucan transferase-like protein [Arabidopsis thaliana] >gi|38605518|sp|Q9SV61|XTH1_ARATH Putative xyloglucan endotransglucosylase/hydrolase protein 1 precursor (At-XTH1) (XTH-1) >gi|7447414|pir||T10210 xyloglucan endo-1,4-beta-D-glucanase homolog F25G13.170 - Arabidopsis thaliana (evalue: 1e-37, score=159)">
      <seq>agatcctggaatgcatcatgatgagattgattttgagttccttggatgagatggtatatatacattaaatacaaatatatttgcaaatgatggaggaagtagagagcaacaattcaatcttgattttgatcctacagaagatttccatacgtatcgaattctttggaatcaacatcatatcatattttacgcggataatgttccaataagagttttcaagaacaatactaattatggagtgaattttccaacacacaaaatgcacattgaagcaaccatatggaatgatacaaattgggttggagaagtagattggagccaaggaccattcaaagcttattatcgcaattttacgattaatggatgtcaatatcaagaatcaaatcgtcaagaatgctataataacaactattattggaatacaattaccagtcttagtccaaatgaagttcaggaatttgaaactgtgaaggcagaacaaatgatttttagttattgcatgaggaacaatagtagaaattttccagaatgtatattaaattgatgaggatgttcttatagtaataataaagttaatgaatgcttgactagtgataacatattactaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11SLm0052K14-Gnxja/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11SLm0052K14.1" temp_strand="-" temp_description="C11SLm0052K14.1  AC220061.1 htgs_phase:3 submitted_to_sgn_as:gi|170933591|gb|AC220061.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11SLm0052K14, complete sequence">
        <position start="87079" stop="85790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86779" g_stop="86597" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86596" i_stop="86515" i_length="82">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86514" g_stop="86080" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="618" r_length="435" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11SLm0052K14.1" gen_strand="-" ref_id="SGN-U333293" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11SLm0052K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86779" e_stop="86597"/>
          <exon e_start="86514" e_stop="86080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCCTGGAATGCATCATGATGAGATTGATTTTGAGTTCCTTGGAGGAGATGGTATATATACATTAAATACAAATATATTTGCAAATGATGGAGGAAGTAGAGAGCAACAATTCAATCTTGATTTTGATCCTACAGAAGATTTCCATACGTATCGAATTCTTTGGAATCAACATCATATCATGTAAGTATTTTAAGTTATACATATCGTCAATATTATTAACTATGTACATGCATATTTATTTATTTAACATTTTTTTTTGAAGATTTTACGCGGATAATGTTCCAATAAGAGTTTTCAAGAACAATACTAATTATGGAGTGAATTTTCCAACACACAAAATGCACATTGAAGCAACCATATGGAATGATACAAATTGGGTTGGAGAAGTAGATTGGAGCCAAGGACCATTCAAAGCTTATTATCGCAATTTTACGATTAATGGATGTCAATATCAAGAATCAAATCGTCAAGAATGCTATAATAACAACTATTATTGGAATACAATTACCAGTCTTAGTCCAAATGAAGTTCAGGAATTTGAAACTGTGAAGGCAGAACAAATGATTTTTAGTTATTGCATGAGGAACAATAGTAGAAATTTTCCAGAATGTATATTAAATTGATGAGGATGTTCTTATAGTAATAATAAAGTTAATGAATGCTTGACTAGTGATAACATATTACTAACTTATGTGAG</genome_strand>
        <mrna_strand>AGATCCTGGAATGCATCATGATGAGATTGATTTTGAGTTCCTTGGATGAGATGGTATATATACATTAAATACAAATATATTTGCAAATGATGGAGGAAGTAGAGAGCAACAATTCAATCTTGATTTTGATCCTACAGAAGATTTCCATACGTATCGAATTCTTTGGAATCAACATCATATCAT..................................................................................ATTTTACGCGGATAATGTTCCAATAAGAGTTTTCAAGAACAATACTAATTATGGAGTGAATTTTCCAACACACAAAATGCACATTGAAGCAACCATATGGAATGATACAAATTGGGTTGGAGAAGTAGATTGGAGCCAAGGACCATTCAAAGCTTATTATCGCAATTTTACGATTAATGGATGTCAATATCAAGAATCAAATCGTCAAGAATGCTATAATAACAACTATTATTGGAATACAATTACCAGTCTTAGTCCAAATGAAGTTCAGGAATTTGAAACTGTGAAGGCAGAACAAATGATTTTTAGTTATTGCATGAGGAACAATAGTAGAAATTTTCCAGAATGTATATTAAATTGATGAGGATGTTCTTATAGTAATAATAAAGTTAATGAATGCTTGACTAGTGATAACATATTACTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="10925" PGL_stop="16884"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10925" e_stop="11074"/>
            <exon e_start="11175" e_stop="11234"/>
            <exon e_start="12175" e_stop="12245"/>
            <exon e_start="12650" e_stop="12714"/>
            <exon e_start="12914" e_stop="12958"/>
            <exon e_start="13038" e_stop="13118"/>
            <exon e_start="14802" e_stop="14869"/>
            <exon e_start="15686" e_stop="15734"/>
            <exon e_start="16048" e_stop="16208"/>
            <exon e_start="16550" e_stop="16884"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.262" acc_prob="0.991" e_score="0.947"/>
          <exon-intron don_prob="0.946" acc_prob="0.310" e_score="0.967"/>
          <exon-intron don_prob="0.822" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.691" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.708" acc_prob="0.859" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.748" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="10925" e_stop="11074" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="0.262" acc_prob="0.991">
            <gDNA_intron_boundary i_start="11075" i_stop="11174" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="11175" e_stop="11234" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.946" acc_prob="0.310">
            <gDNA_intron_boundary i_start="11235" i_stop="12174" i_length="940"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12175" e_stop="12245" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.822" acc_prob="0.994">
            <gDNA_intron_boundary i_start="12246" i_stop="12649" i_length="404"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12650" e_stop="12714" e_length="65"/>
          </exon>
          <intron i_serial="4" don_prob="0.691" acc_prob="0.993">
            <gDNA_intron_boundary i_start="12715" i_stop="12913" i_length="199"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12914" e_stop="12958" e_length="45"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.965">
            <gDNA_intron_boundary i_start="12959" i_stop="13037" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="13038" e_stop="13118" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="0.708" acc_prob="0.859">
            <gDNA_intron_boundary i_start="13119" i_stop="14801" i_length="1683"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="14802" e_stop="14869" e_length="68"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.987">
            <gDNA_intron_boundary i_start="14870" i_stop="15685" i_length="816"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="15686" e_stop="15734" e_length="49"/>
          </exon>
          <intron i_serial="8" don_prob="0.973" acc_prob="0.966">
            <gDNA_intron_boundary i_start="15735" i_stop="16047" i_length="313"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="16048" e_stop="16208" e_length="161"/>
          </exon>
          <intron i_serial="9" don_prob="0.980" acc_prob="0.748">
            <gDNA_intron_boundary i_start="16209" i_stop="16549" i_length="341"/>
          </intron>
          <exon e_serial="10" e_score="0.994">
            <gDNA_exon_boundary e_start="16550" e_stop="16884" e_length="335"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10925" stop="11074"/>
              <exon start="11175" stop="11234"/>
              <exon start="12175" stop="12245"/>
              <exon start="12650" stop="12714"/>
              <exon start="12914" stop="12958"/>
              <exon start="13038" stop="13118"/>
              <exon start="14802" stop="14869"/>
              <exon start="15686" stop="15734"/>
              <exon start="16048" stop="16208"/>
              <exon start="16550" stop="16884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320258" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACTTCTGTGCTATATGTAGGTCTGCTGGTAAAAAAGTTAAATGGAGTGGCTAGTAATCATCGTTACAGTGGTTGTGCTGTGGGTGGCTTCACTCTTTAAAATTCTTCACGAATCTCTCTCTGCCTCACAAGTTAAAGTTTTGAATGATG : TGGGGTTTTTTGCAAGAGAAACGTGTTGTTGATTATTGCCCATCCGGATGATGAGTCTAT : GTTCTTTACTCCAACCATTAATTATTTGTCTTCAAGAGGATGTAATTTGCACATATTATGCATGTCAAAAG : GTAATGCAGATGGTATAGGCGATGTCAGAAAAGAAGAACTTTATTTAGCCTCGGTTGTGCTTAAG : GTTCCACAAAAGCAAGTGAAAGTCCTTGACCATCCAGATCTACAG : GATGGTTTTGGCAAATCATGGAACTCTAAGTTACTGTCAAAGATTATCAAGGAGGAAATTGTCAATTGTGCAATTGATTTG : GTCATAACTTTTGATAATTATGGAGTCTCAGGTCACTGTAACCATCAAGATGTTCATCAAGGTGTACG : AAAACTATTGCAAGATACTTCACATAAAGAAGTTGAGGCCTGGGAGCTT : GTTAGCACTAGCATATTGCGCAAGTACAGTGGACCAGTTGACATATGGTTGTCCCTCCTATCTGCCAAGTTCCATTTTAGTGGAGTGGCACATTGCTTTCTAAACGTACATCCCGGAAGGAGCTTAGCTGCAATGGCTCAGCACAGGAGTCAGTGGGTTTG : GTTTCGCAAGCTATTTGTTTCTTTCTCAAGTTACACATACGTTAACTGCGTTAGGAAGATCAACTAGATACATGTTAAGAGTCGTTGGTTCAGGAAGACACTTGAAAGGAAGATCGACTAGACTAGACGTTAGTTTGGTCCAACAACACTTGAAATGGCAATGGTAAGTAAAACCACTTAGTTTTCGATCATCTAAGTCTCTCTTGTGAGTTCTTCTTTGAAAAACTTCCGATTGATTAAAAATTGGAGAAGTGTTTCAATGTTTTTTTGTGGTTGTAGAATAGTTGGAACTACTTCACTTAATTAAATCGATATAAATGATTTGAGCTCTTTTT</gDNA_template>
            <first_frame> H  F  C  A  I  C  R  S  A  G  K  K  V  K  W  S  G  *  *  S  S  L  Q  W  L  C  C  G  W  L  H  S  L  K  F  F  T  N  L  S  L  P  H  K  L  K  F  *  M  M  :  W  G  F  L  Q  E  K  R  V  V  D  Y  C  P  S  G  *  *  V  Y  :  V  L  Y  S  N  H  *  L  F  V  F  K  R  M  *  F  A  H  I  M  H  V  K  R :   *  C  R  W  Y  R  R  C  Q  K  R  R  T  L  F  S  L  G  C  A  *   : G  S  T  K  A  S  E  S  P  *  P  S  R  S  T   : G  W  F  W  Q  I  M  E  L  *  V  T  V  K  D  Y  Q  G  G  N  C  Q  L  C  N  *  F   : G  H  N  F  *  *  L  W  S  L  R  S  L  *  P  S  R  C  S  S  R  C  T  :  K  T  I  A  R  Y  F  T  *  R  S  *  G  L  G  A   : C  *  H  *  H  I  A  Q  V  Q  W  T  S  *  H  M  V  V  P  P  I  C  Q  V  P  F  *  W  S  G  T  L  L  S  K  R  T  S  R  K  E  L  S  C  N  G  S  A  Q  E  S  V  G  L  :  V  S  Q  A  I  C  F  F  L  K  L  H  I  R  *  L  R  *  E  D  Q  L  D  T  C  *  E  S  L  V  Q  E  D  T  *  K  E  D  R  L  D  *  T  L  V  W  S  N  N  T  *  N  G  N  G  K  *  N  H  L  V  F  D  H  L  S  L  S  C  E  F  F  F  E  K  L  P  I  D  *  K  L  E  K  C  F  N  V  F  L  W  L  *  N  S  W  N  Y  F  T  *  L  N  R  Y  K  *  F  E  L  F   </first_frame>
            <second_frame>  T  S  V  L  Y  V  G  L  L  V  K  K  L  N  G  V  A  S  N  H  R  Y  S  G  C  A  V  G  G  F  T  L  *  N  S  S  R  I  S  L  C  L  T  S  *  S  F  E  *  C :   G  V  F  C  K  R  N  V  L  L  I  I  A  H  P  D  D  E  S  M :   F  F  T  P  T  I  N  Y  L  S  S  R  G  C  N  L  H  I  L  C  M  S  K   : G  N  A  D  G  I  G  D  V  R  K  E  E  L  Y  L  A  S  V  V  L  K  :  V  P  Q  K  Q  V  K  V  L  D  H  P  D  L  Q  :  D  G  F  G  K  S  W  N  S  K  L  L  S  K  I  I  K  E  E  I  V  N  C  A  I  D  L  :  V  I  T  F  D  N  Y  G  V  S  G  H  C  N  H  Q  D  V  H  Q  G  V  R :   K  L  L  Q  D  T  S  H  K  E  V  E  A  W  E  L  :  V  S  T  S  I  L  R  K  Y  S  G  P  V  D  I  W  L  S  L  L  S  A  K  F  H  F  S  G  V  A  H  C  F  L  N  V  H  P  G  R  S  L  A  A  M  A  Q  H  R  S  Q  W  V  W :   F  R  K  L  F  V  S  F  S  S  Y  T  Y  V  N  C  V  R  K  I  N  *  I  H  V  K  S  R  W  F  R  K  T  L  E  R  K  I  D  *  T  R  R  *  F  G  P  T  T  L  E  M  A  M  V  S  K  T  T  *  F  S  I  I  *  V  S  L  V  S  S  S  L  K  N  F  R  L  I  K  N  W  R  S  V  S  M  F  F  C  G  C  R  I  V  G  T  T  S  L  N  *  I  D  I  N  D  L  S  S  F  </second_frame>
            <third_frame>   L  L  C  Y  M  *  V  C  W  *  K  S  *  M  E  W  L  V  I  I  V  T  V  V  V  L  W  V  A  S  L  F  K  I  L  H  E  S  L  S  A  S  Q  V  K  V  L  N  D   : V  G  F  F  A  R  E  T  C  C  *  L  L  P  I  R  M  M  S  L   : C  S  L  L  Q  P  L  I  I  C  L  Q  E  D  V  I  C  T  Y  Y  A  C  Q  K  :  V  M  Q  M  V  *  A  M  S  E  K  K  N  F  I  *  P  R  L  C  L  R :   F  H  K  S  K  *  K  S  L  T  I  Q  I  Y  R :   M  V  L  A  N  H  G  T  L  S  Y  C  Q  R  L  S  R  R  K  L  S  I  V  Q  L  I  W :   S  *  L  L  I  I  M  E  S  Q  V  T  V  T  I  K  M  F  I  K  V  Y   : E  N  Y  C  K  I  L  H  I  K  K  L  R  P  G  S  L :   L  A  L  A  Y  C  A  S  T  V  D  Q  L  T  Y  G  C  P  S  Y  L  P  S  S  I  L  V  E  W  H  I  A  F  *  T  Y  I  P  E  G  A  *  L  Q  W  L  S  T  G  V  S  G  F   : G  F  A  S  Y  L  F  L  S  Q  V  T  H  T  L  T  A  L  G  R  S  T  R  Y  M  L  R  V  V  G  S  G  R  H  L  K  G  R  S  T  R  L  D  V  S  L  V  Q  Q  H  L  K  W  Q  W  *  V  K  P  L  S  F  R  S  S  K  S  L  L  *  V  L  L  *  K  T  S  D  *  L  K  I  G  E  V  F  Q  C  F  F  V  V  V  E  *  L  E  L  L  H  L  I  K  S  I  *  M  I  *  A  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11SLm0052K14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11073" stop="11074"/>
                    <exon start="11175" stop="11234"/>
                    <exon start="12175" stop="12245"/>
                    <exon start="12650" stop="12714"/>
                    <exon start="12914" stop="12958"/>
                    <exon start="13038" stop="13118"/>
                    <exon start="14802" stop="14869"/>
                    <exon start="15686" stop="15734"/>
                    <exon start="16048" stop="16208"/>
                    <exon start="16550" stop="16616"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CGVFCKRNVLLIIAHPDDESMFFTPTINYLSSRGCNLHILCMSKGNADGIGDVRKEELYLASVVLKVPQKQVKVLDHPDLQDGFGKSWNSKLLSKIIKEEIVNCAIDLVITFDNYGVSGHCNHQDVHQGVRKLLQDTSHKEVEAWELVSTSILRKYSGPVDIWLSLLSAKFHFSGVAHCFLNVHPGRSLAAMAQHRSQWVWFRKLFVSFSSYTYVNCVRKIN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="22687" PGL_stop="20014"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22687" e_stop="22478"/>
            <exon e_start="21193" e_stop="20937"/>
            <exon e_start="20847" e_stop="20669"/>
            <exon e_start="20583" e_stop="20014"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.521" acc_prob="0.891" e_score="0.994"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22687" e_stop="22478" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="22477" i_stop="21194" i_length="1284"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21193" e_stop="20937" e_length="257"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="20936" i_stop="20848" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="20847" e_stop="20669" e_length="179"/>
          </exon>
          <intron i_serial="3" don_prob="0.521" acc_prob="0.891">
            <gDNA_intron_boundary i_start="20668" i_stop="20584" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="0.958">
            <gDNA_exon_boundary e_start="20583" e_stop="20014" e_length="570"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22687" stop="22478"/>
              <exon start="21193" stop="20937"/>
              <exon start="20847" stop="20669"/>
              <exon start="20583" stop="20014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324530" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCCCGTATATCAAAGAAAAATGTTTGCTTCGTTATGTTTGTGGATGAAGTTACTCTAAAAACTCTTACAGCTGAAGGTAAGATGCCAGACAGCATGGGCTTTGTAGGTTTATGGAAGATCGTAGTTGTAAAGAATCTTCCATTTTCTGATATGCGGAGAGTGGGAAAGATACCAAAGTTATTGTCTCATCGACTCTTTACTTCAGCCAG : GTATTCAATATGGTTAGATAGCAAGCTTCGGCTGCAGCTTGATCCCCTACTCATATTGGAGTACTTTCTGTGGCGTAAAGGTTATGAATATGCAATTTCCAATCACTATGACAGGCATTGTGTGTGGGAAGAAGTAGCCCAAAACAAGAAACTTAACAAGTACAATCATACTGTCATAGATGAACAATTTGCATTTTACCAGGCTGATGGATTGCAAAGATTTAATGCATCTGATCCAAACAAGCTTCTTCACAGCA : ATGTACCAGAAGGATCTTTTATTGTGAGGGCTCACACACCAATGTCAAACTTGTTTTCTTGTTTATGGTTCAATGAGGTTGACCGGTTTACTCCCCGTGATCAACTGAGTTTTGCATATACATACTATAAGTTGAGAAAGATGAACCCAGACAAACCTTTTTATCTCAACATGTTCAAG : GATTGTGAAAGGCGAAAGATAGCTAAGCTGTTCCGTCACAGATCAGATGAGCAGAGGAATATTCTCTCTCAATCTGAGACAGAGTAAAAGCTGAGTGACTCCTGGTTTTGGCTGATGATTCAATTTTTTTGTTATACGCGTCACTATATTGTAGTTGCTTGCTGGAAAGAGGGTCATCGTGCCATAGCCATTGTGATTGTGTCTGTTGTACATTACCAAAATTCTCTAGAGAAAGTGATACACATGCCAGCCCTATCGATATAAAGCAACGCAAGGTGGATTCTGCTGGCTCATCATCTCATCTTTCTGGTGCAAAGAACATACTACCACCATTACAGCTTCCATTCTATTAATTTCATTGCCTTGACCAACTCCTAGTGTTAAAGCAGCATCCTATTAATTTTCCATTGTATCTACATGAGTTGGTGAAGAAAATACCTGATACTATATGTATTCTTTTTCTATGAAGCAGGGTGCCAATTTATTGTTTCTAATATTTGGACCAATTGATACTATTTACTCATTCAATTTATAGTCTTATCATGTTTAATTCCAACTTTTAAGTGGCTT</gDNA_template>
            <first_frame> L  P  Y  I  K  E  K  C  L  L  R  Y  V  C  G  *  S  Y  S  K  N  S  Y  S  *  R  *  D  A  R  Q  H  G  L  C  R  F  M  E  D  R  S  C  K  E  S  S  I  F  *  Y  A  E  S  G  K  D  T  K  V  I  V  S  S  T  L  Y  F  S  Q  :  V  F  N  M  V  R  *  Q  A  S  A  A  A  *  S  P  T  H  I  G  V  L  S  V  A  *  R  L  *  I  C  N  F  Q  S  L  *  Q  A  L  C  V  G  R  S  S  P  K  Q  E  T  *  Q  V  Q  S  Y  C  H  R  *  T  I  C  I  L  P  G  *  W  I  A  K  I  *  C  I  *  S  K  Q  A  S  S  Q  Q :   C  T  R  R  I  F  Y  C  E  G  S  H  T  N  V  K  L  V  F  L  F  M  V  Q  *  G  *  P  V  Y  S  P  *  S  T  E  F  C  I  Y  I  L  *  V  E  K  D  E  P  R  Q  T  F  L  S  Q  H  V  Q   : G  L  *  K  A  K  D  S  *  A  V  P  S  Q  I  R  *  A  E  E  Y  S  L  S  I  *  D  R  V  K  A  E  *  L  L  V  L  A  D  D  S  I  F  L  L  Y  A  S  L  Y  C  S  C  L  L  E  R  G  S  S  C  H  S  H  C  D  C  V  C  C  T  L  P  K  F  S  R  E  S  D  T  H  A  S  P  I  D  I  K  Q  R  K  V  D  S  A  G  S  S  S  H  L  S  G  A  K  N  I  L  P  P  L  Q  L  P  F  Y  *  F  H  C  L  D  Q  L  L  V  L  K  Q  H  P  I  N  F  P  L  Y  L  H  E  L  V  K  K  I  P  D  T  I  C  I  L  F  L  *  S  R  V  P  I  Y  C  F  *  Y  L  D  Q  L  I  L  F  T  H  S  I  Y  S  L  I  M  F  N  S  N  F  *  V  A  </first_frame>
            <second_frame>  S  R  I  S  K  K  N  V  C  F  V  M  F  V  D  E  V  T  L  K  T  L  T  A  E  G  K  M  P  D  S  M  G  F  V  G  L  W  K  I  V  V  V  K  N  L  P  F  S  D  M  R  R  V  G  K  I  P  K  L  L  S  H  R  L  F  T  S  A  R :   Y  S  I  W  L  D  S  K  L  R  L  Q  L  D  P  L  L  I  L  E  Y  F  L  W  R  K  G  Y  E  Y  A  I  S  N  H  Y  D  R  H  C  V  W  E  E  V  A  Q  N  K  K  L  N  K  Y  N  H  T  V  I  D  E  Q  F  A  F  Y  Q  A  D  G  L  Q  R  F  N  A  S  D  P  N  K  L  L  H  S   : N  V  P  E  G  S  F  I  V  R  A  H  T  P  M  S  N  L  F  S  C  L  W  F  N  E  V  D  R  F  T  P  R  D  Q  L  S  F  A  Y  T  Y  Y  K  L  R  K  M  N  P  D  K  P  F  Y  L  N  M  F  K  :  D  C  E  R  R  K  I  A  K  L  F  R  H  R  S  D  E  Q  R  N  I  L  S  Q  S  E  T  E  *  K  L  S  D  S  W  F  W  L  M  I  Q  F  F  C  Y  T  R  H  Y  I  V  V  A  C  W  K  E  G  H  R  A  I  A  I  V  I  V  S  V  V  H  Y  Q  N  S  L  E  K  V  I  H  M  P  A  L  S  I  *  S  N  A  R  W  I  L  L  A  H  H  L  I  F  L  V  Q  R  T  Y  Y  H  H  Y  S  F  H  S  I  N  F  I  A  L  T  N  S  *  C  *  S  S  I  L  L  I  F  H  C  I  Y  M  S  W  *  R  K  Y  L  I  L  Y  V  F  F  F  Y  E  A  G  C  Q  F  I  V  S  N  I  W  T  N  *  Y  Y  L  L  I  Q  F  I  V  L  S  C  L  I  P  T  F  K  W  L </second_frame>
            <third_frame>   P  V  Y  Q  R  K  M  F  A  S  L  C  L  W  M  K  L  L  *  K  L  L  Q  L  K  V  R  C  Q  T  A  W  A  L  *  V  Y  G  R  S  *  L  *  R  I  F  H  F  L  I  C  G  E  W  E  R  Y  Q  S  Y  C  L  I  D  S  L  L  Q  P   : G  I  Q  Y  G  *  I  A  S  F  G  C  S  L  I  P  Y  S  Y  W  S  T  F  C  G  V  K  V  M  N  M  Q  F  P  I  T  M  T  G  I  V  C  G  K  K  *  P  K  T  R  N  L  T  S  T  I  I  L  S  *  M  N  N  L  H  F  T  R  L  M  D  C  K  D  L  M  H  L  I  Q  T  S  F  F  T  A  :  M  Y  Q  K  D  L  L  L  *  G  L  T  H  Q  C  Q  T  C  F  L  V  Y  G  S  M  R  L  T  G  L  L  P  V  I  N  *  V  L  H  I  H  T  I  S  *  E  R  *  T  Q  T  N  L  F  I  S  T  C  S  R :   I  V  K  G  E  R  *  L  S  C  S  V  T  D  Q  M  S  R  G  I  F  S  L  N  L  R  Q  S  K  S  *  V  T  P  G  F  G  *  *  F  N  F  F  V  I  R  V  T  I  L  *  L  L  A  G  K  R  V  I  V  P  *  P  L  *  L  C  L  L  Y  I  T  K  I  L  *  R  K  *  Y  T  C  Q  P  Y  R  Y  K  A  T  Q  G  G  F  C  W  L  I  I  S  S  F  W  C  K  E  H  T  T  T  I  T  A  S  I  L  L  I  S  L  P  *  P  T  P  S  V  K  A  A  S  Y  *  F  S  I  V  S  T  *  V  G  E  E  N  T  *  Y  Y  M  Y  S  F  S  M  K  Q  G  A  N  L  L  F  L  I  F  G  P  I  D  T  I  Y  S  F  N  L  *  S  Y  H  V  *  F  Q  L  L  S  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11SLm0052K14.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22686" stop="22478"/>
                    <exon start="21193" stop="20937"/>
                    <exon start="20847" stop="20669"/>
                    <exon start="20583" stop="20497"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRISKKNVCFVMFVDEVTLKTLTAEGKMPDSMGFVGLWKIVVVKNLPFSDMRRVGKIPKLLSHRLFTSARYSIWLDSKLRLQLDPLLILEYFLWRKGYEYAISNHYDRHCVWEEVAQNKKLNKYNHTVIDEQFAFYQADGLQRFNASDPNKLLHSNVPEGSFIVRAHTPMSNLFSCLWFNEVDRFTPRDQLSFAYTYYKLRKMNPDKPFYLNMFKDCERRKIAKLFRHRSDEQRNILSQSETE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11SLm0052K14.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20485" stop="20231"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLVLADDSIFLLYASLYCSCLLERGSSCHSHCDCVCCTLPKFSRESDTHASPIDIKQRKVDSAGSSSHLSGAKNILPPLQLPFY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="31183" PGL_stop="29149"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31183" e_stop="31029"/>
            <exon e_start="29478" e_stop="29149"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31183" e_stop="31029" e_length="155"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.975">
            <gDNA_intron_boundary i_start="31028" i_stop="29479" i_length="1550"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29478" e_stop="29149" e_length="330"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31183" stop="31029"/>
              <exon start="29478" stop="29149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342576" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTACAGGGACTTTTCCAATAAGGAATCCTCTTCAAGTTCTCATCACCAAAAATCTAACACAAACTCTGGACGTGTCAGCTTCATTGATGGTCACCCCTCAAAGAAGTCTTCGTCAGAAAAGCGGCCAGTACCCAGAAGGAAGTCAAGGAAGCATG : CTTGTGAGATGAAAATTTTGAATGCTAGTGCCCTTCTTGTGGAACCTCTGGAAAGTCGAAAATTTTCAAGGTTTTCGTTGCAGTACGCGGAAACAGAGGACAAACCTTTTGACGATGCAAACTGGGAACCTAGATTTTCTGGGCATCAAAGTATGGAAGAACGGGAAGAATCTTTTCTTGCACGCAATCAAAAAATAAACTGTGGTTTTGTTCGAGGCCCTGAAGAAACTCCAAGTACCGGATTTGACTTGGCAGAAGATGACGCAAAATACATTAGCAGTTGTCACATTGCTGTAGCTTCATGCATCTTCGGAAATTCGGATCGCTTGA</gDNA_template>
            <first_frame> V  Q  G  L  F  Q  *  G  I  L  F  K  F  S  S  P  K  I  *  H  K  L  W  T  C  Q  L  H  *  W  S  P  L  K  E  V  F  V  R  K  A  A  S  T  Q  K  E  V  K  E  A  C :   L  *  D  E  N  F  E  C  *  C  P  S  C  G  T  S  G  K  S  K  I  F  K  V  F  V  A  V  R  G  N  R  G  Q  T  F  *  R  C  K  L  G  T  *  I  F  W  A  S  K  Y  G  R  T  G  R  I  F  S  C  T  Q  S  K  N  K  L  W  F  C  S  R  P  *  R  N  S  K  Y  R  I  *  L  G  R  R  *  R  K  I  H  *  Q  L  S  H  C  C  S  F  M  H  L  R  K  F  G  S  L   </first_frame>
            <second_frame>  Y  R  D  F  S  N  K  E  S  S  S  S  S  H  H  Q  K  S  N  T  N  S  G  R  V  S  F  I  D  G  H  P  S  K  K  S  S  S  E  K  R  P  V  P  R  R  K  S  R  K  H   : A  C  E  M  K  I  L  N  A  S  A  L  L  V  E  P  L  E  S  R  K  F  S  R  F  S  L  Q  Y  A  E  T  E  D  K  P  F  D  D  A  N  W  E  P  R  F  S  G  H  Q  S  M  E  E  R  E  E  S  F  L  A  R  N  Q  K  I  N  C  G  F  V  R  G  P  E  E  T  P  S  T  G  F  D  L  A  E  D  D  A  K  Y  I  S  S  C  H  I  A  V  A  S  C  I  F  G  N  S  D  R  L  </second_frame>
            <third_frame>   T  G  T  F  P  I  R  N  P  L  Q  V  L  I  T  K  N  L  T  Q  T  L  D  V  S  A  S  L  M  V  T  P  Q  R  S  L  R  Q  K  S  G  Q  Y  P  E  G  S  Q  G  S  M  :  L  V  R  *  K  F  *  M  L  V  P  F  L  W  N  L  W  K  V  E  N  F  Q  G  F  R  C  S  T  R  K  Q  R  T  N  L  L  T  M  Q  T  G  N  L  D  F  L  G  I  K  V  W  K  N  G  K  N  L  F  L  H  A  I  K  K  *  T  V  V  L  F  E  A  L  K  K  L  Q  V  P  D  L  T  W  Q  K  M  T  Q  N  T  L  A  V  V  T  L  L  *  L  H  A  S  S  E  I  R  I  A  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11SLm0052K14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31182" stop="31029"/>
                    <exon start="29478" stop="29150"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRDFSNKESSSSSHHQKSNTNSGRVSFIDGHPSKKSSSEKRPVPRRKSRKHACEMKILNASALLVEPLESRKFSRFSLQYAETEDKPFDDANWEPRFSGHQSMEEREESFLARNQKINCGFVRGPEETPSTGFDLAEDDAKYISSCHIAVASCIFGNSDRL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="39175" PGL_stop="43919"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39175" e_stop="39276"/>
            <exon e_start="41008" e_stop="41078"/>
            <exon e_start="43153" e_stop="43919"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.982" e_score="0.961"/>
          <exon-intron don_prob="0.747" acc_prob="0.881" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="39175" e_stop="39276" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.982">
            <gDNA_intron_boundary i_start="39277" i_stop="41007" i_length="1731"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41008" e_stop="41078" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.747" acc_prob="0.881">
            <gDNA_intron_boundary i_start="41079" i_stop="43152" i_length="2074"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="43153" e_stop="43919" e_length="767"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39175" stop="39276"/>
              <exon start="41008" stop="41078"/>
              <exon start="43153" stop="43919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328980" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTGGTCTTCGTGTCCCAATTGAGTGTAGAGCTCAGCTGTTTCAACATTTTCTTGTGCTTCCCATTCATTTCTTGAAGCAGAGCTGGAATTTGAATTCTGAG : GGATGCTAGGAAAATCATTTGCTACTCCTGTGCTGACCTTTAACTCTGCATCATGCTTCTCCTCTCCTGGT : TGTGAGTCCATCTCAACAACAGCTAACACTCTAGTAGGGTATGTAAATTGCTCGAGTAGCATTACATTTAATGTTACTAGGGGATCTTGGACGTCCAATTATCCATTCAAGAAATGGACGTTGCATTCAACAGCTACTGACAATATAGTATTAACTGAAGAAGAGAAGAAAACGTGGAACGATAGCAGACAAGCTCTTTCTGCGTTAAAATTTAGCCCAGAGGAAGAAGACAAAATATTAGGAAAAGCATTTGGCCACATACATTCGCCTTACTGGTATGAAGAACGGAAGAAAGAGGTTCCACGACTAGAAGTTGTGAACGAGATACTGGATTATCTAAGGAGTTTAAGCCTTACTGATGATGATCTCACCAAACTTGTCAAGAAATTCCCAGAAGTTCTTGGATGTAGCCTTGAAGATGAAATGAAAACCAATGTCGAAATTCTGGAAAAACAATGGGGAATTGAAGGTAAAACTCTGAGAAATTTGCTTCTTCGAAATCCAAAAGTTTTAGGCTACAATGTCGATTGCAAAGGTGATTGTGTGGCTAAATGCACTCGCTGTTGGGCTCGATTCTAGCTGCATTCTTGTGTTTCATCCTCTATACCTTTCTTTATGTATAACTTTCGCCAACCATTTTATCTAATTATTCAAAATCGAAAGTAAATTCATACAAGTCTGTATTGCACTGATATGTGACTCAAGTTTAGATCACAAAGGATGTTACAGAGACAATGAAATGAAAAAAATCAGAGCAATTTTTATAA</gDNA_template>
            <first_frame> I  G  L  R  V  P  I  E  C  R  A  Q  L  F  Q  H  F  L  V  L  P  I  H  F  L  K  Q  S  W  N  L  N  S  E  :  G  C  *  E  N  H  L  L  L  L  C  *  P  L  T  L  H  H  A  S  P  L  L  V :   V  S  P  S  Q  Q  Q  L  T  L  *  *  G  M  *  I  A  R  V  A  L  H  L  M  L  L  G  D  L  G  R  P  I  I  H  S  R  N  G  R  C  I  Q  Q  L  L  T  I  *  Y  *  L  K  K  R  R  K  R  G  T  I  A  D  K  L  F  L  R  *  N  L  A  Q  R  K  K  T  K  Y  *  E  K  H  L  A  T  Y  I  R  L  T  G  M  K  N  G  R  K  R  F  H  D  *  K  L  *  T  R  Y  W  I  I  *  G  V  *  A  L  L  M  M  I  S  P  N  L  S  R  N  S  Q  K  F  L  D  V  A  L  K  M  K  *  K  P  M  S  K  F  W  K  N  N  G  E  L  K  V  K  L  *  E  I  C  F  F  E  I  Q  K  F  *  A  T  M  S  I  A  K  V  I  V  W  L  N  A  L  A  V  G  L  D  S  S  C  I  L  V  F  H  P  L  Y  L  S  L  C  I  T  F  A  N  H  F  I  *  L  F  K  I  E  S  K  F  I  Q  V  C  I  A  L  I  C  D  S  S  L  D  H  K  G  C  Y  R  D  N  E  M  K  K  I  R  A  I  F  I  </first_frame>
            <second_frame>  L  V  F  V  S  Q  L  S  V  E  L  S  C  F  N  I  F  L  C  F  P  F  I  S  *  S  R  A  G  I  *  I  L  R :   D  A  R  K  I  I  C  Y  S  C  A  D  L  *  L  C  I  M  L  L  L  S  W   : L  *  V  H  L  N  N  S  *  H  S  S  R  V  C  K  L  L  E  *  H  Y  I  *  C  Y  *  G  I  L  D  V  Q  L  S  I  Q  E  M  D  V  A  F  N  S  Y  *  Q  Y  S  I  N  *  R  R  E  E  N  V  E  R  *  Q  T  S  S  F  C  V  K  I  *  P  R  G  R  R  Q  N  I  R  K  S  I  W  P  H  T  F  A  L  L  V  *  R  T  E  E  R  G  S  T  T  R  S  C  E  R  D  T  G  L  S  K  E  F  K  P  Y  *  *  *  S  H  Q  T  C  Q  E  I  P  R  S  S  W  M  *  P  *  R  *  N  E  N  Q  C  R  N  S  G  K  T  M  G  N  *  R  *  N  S  E  K  F  A  S  S  K  S  K  S  F  R  L  Q  C  R  L  Q  R  *  L  C  G  *  M  H  S  L  L  G  S  I  L  A  A  F  L  C  F  I  L  Y  T  F  L  Y  V  *  L  S  P  T  I  L  S  N  Y  S  K  S  K  V  N  S  Y  K  S  V  L  H  *  Y  V  T  Q  V  *  I  T  K  D  V  T  E  T  M  K  *  K  K  S  E  Q  F  L  * </second_frame>
            <third_frame>   W  S  S  C  P  N  *  V  *  S  S  A  V  S  T  F  S  C  A  S  H  S  F  L  E  A  E  L  E  F  E  F  *   : G  M  L  G  K  S  F  A  T  P  V  L  T  F  N  S  A  S  C  F  S  S  P  G  :  C  E  S  I  S  T  T  A  N  T  L  V  G  Y  V  N  C  S  S  S  I  T  F  N  V  T  R  G  S  W  T  S  N  Y  P  F  K  K  W  T  L  H  S  T  A  T  D  N  I  V  L  T  E  E  E  K  K  T  W  N  D  S  R  Q  A  L  S  A  L  K  F  S  P  E  E  E  D  K  I  L  G  K  A  F  G  H  I  H  S  P  Y  W  Y  E  E  R  K  K  E  V  P  R  L  E  V  V  N  E  I  L  D  Y  L  R  S  L  S  L  T  D  D  D  L  T  K  L  V  K  K  F  P  E  V  L  G  C  S  L  E  D  E  M  K  T  N  V  E  I  L  E  K  Q  W  G  I  E  G  K  T  L  R  N  L  L  L  R  N  P  K  V  L  G  Y  N  V  D  C  K  G  D  C  V  A  K  C  T  R  C  W  A  R  F  *  L  H  S  C  V  S  S  S  I  P  F  F  M  Y  N  F  R  Q  P  F  Y  L  I  I  Q  N  R  K  *  I  H  T  S  L  Y  C  T  D  M  *  L  K  F  R  S  Q  R  M  L  Q  R  Q  *  N  E  K  N  Q  S  N  F  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11SLm0052K14.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39276" stop="41078"/>
                    <exon start="43153" stop="43731"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMLGKSFATPVLTFNSASCFSSPGCESISTTANTLVGYVNCSSSITFNVTRGSWTSNYPFKKWTLHSTATDNIVLTEEEKKTWNDSRQALSALKFSPEEEDKILGKAFGHIHSPYWYEERKKEVPRLEVVNEILDYLRSLSLTDDDLTKLVKKFPEVLGCSLEDEMKTNVEILEKQWGIEGKTLRNLLLRNPKVLGYNVDCKGDCVAKCTRCWARF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="76889" PGL_stop="78105"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76889" e_stop="78105"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="76889" e_stop="78105" e_length="1217"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76889" stop="78105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312594" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTCAAATACTGAAAATATTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTTTAAGTTCGTTGAAGTTAAAGAAGTCTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTTTATATTTATTCTGTTTCATCTTATTTCTGTTTCTGTTTATTAATCTTATAAATACAAACTGTAAGAATAACAATCTTAAGAAATTTAACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTCAAAATTCATTCGATTAACAATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAATAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGTCATTTGTGACAGGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTAAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGAACACACTCAGATTTTTTGTGTAAAAATTATATCTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCCAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCTGGAATGAAGAAATTCATTGTGGCAAAATTTCTGAACTATAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTACAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGACTGTTGA</gDNA_template>
            <first_frame> R  H  V  P  C  *  K  W  L  *  K  E  V  N  F  *  F  F  K  Y  *  K  Y  F  F  L  C  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  *  V  R  *  S  *  R  S  L  R  Y  R  Y  F  F  N  R  F  N  P  F  Y  L  G  R  N  *  S  I  T  L  G  T  V  R  G  L  N  F  L  R  T  H  S  S  F  C  G  L  G  L  I  L  V  F  Y  I  Y  S  V  S  S  Y  F  C  F  C  L  L  I  L  *  I  Q  T  V  R  I  T  I  L  R  N  L  T  V  S  V  F  E  V  S  G  D  *  N  L  Y  D  F  L  L  C  L  N  F  Q  N  S  F  D  *  Q  L  K  E  H  K  N  F  I  V  K  S  E  I  V  C  V  K  I  C  S  L  L  L  V  F  *  I  L  N  L  S  V  I  C  D  R  K  K  K  T  N  S  S  Q  T  N  A  G  T  V  S  A  A  T  T  T  V  A  H  N  R  S  N  A  A  L  A  P  A  K  K  P  A  K  F  S  G  V  D  F  K  R  W  Q  Q  K  M  F  F  Y  L  T  T  L  S  L  Q  K  F  I  N  E  N  V  P  V  M  S  D  E  T  P  A  D  E  R  F  L  V  T  E  A  *  T  H  S  D  F  L  C  K  N  Y  I  L  S  G  L  Q  D  D  L  Y  N  V  Y  S  N  A  K  T  S  K  E  L  W  D  A  L  E  K  K  Y  K  T  E  D  A  G  M  K  K  F  I  V  A  K  F  L  N  Y  K  M  I  D  S  K  T  V  V  T  Q  V  Q  E  L  Q  V  I  I  H  D  L  L  A  E  G  L  I  V  N  D  A  F  Q  V  A  T  I  I  E  K  L  P  P  L  W  K  D  F  K  N  Y  L  K  H  K  R  K  E  M  T  V   </first_frame>
            <second_frame>  D  M  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  S  N  T  E  N  I  S  F  S  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  C  F  K  F  V  E  V  K  E  V  *  G  T  A  I  S  L  T  G  L  I  R  F  I  L  G  E  I  N  P  *  P  W  V  Q  *  G  D  *  I  S  *  G  H  T  V  V  S  V  D  S  D  *  F  L  Y  F  I  F  I  L  F  H  L  I  S  V  S  V  Y  *  S  Y  K  Y  K  L  *  E  *  Q  S  *  E  I  *  Q  F  L  Y  L  R  F  L  E  I  K  T  F  M  I  F  Y  S  A  *  I  F  K  I  H  S  I  N  N  *  K  N  I  K  T  L  S  L  N  Q  K  *  F  V  *  R  F  V  L  Y  C  *  Y  F  K  Y  L  I  Y  L  S  F  V  T  G  K  K  R  L  I  Q  V  K  Q  M  L  E  Q  *  V  L  Q  Q  Q  R  L  H  I  I  V  Q  M  L  P  *  H  R  L  R  N  L  Q  S  F  L  E  S  T  L  R  D  G  S  K  R  C  S  S  I  S  L  R  *  V  C  R  S  S  S  M  R  M  F  L  L  C  Q  M  K  L  R  L  M  N  D  S  W  *  Q  K  H  E  H  T  Q  I  F  C  V  K  I  I  S  *  V  V  C  K  M  I  C  T  M  C  T  A  M  P  K  P  Q  K  N  S  G  M  L  *  K  R  S  T  K  Q  K  M  L  E  *  R  N  S  L  W  Q  N  F  *  T  I  R  *  *  T  V  R  L  S  S  P  K  F  K  N  C  R  S  *  S  M  I  S  L  L  K  D  *  L  *  M  M  L  F  K  W  L  Q  L  L  K  S  Y  L  H  C  G  R  T  L  K  T  T  *  N  T  N  A  R  R  *  L  L  </second_frame>
            <third_frame>   T  C  S  L  L  K  M  A  I  K  G  S  Q  F  L  I  F  Q  I  L  K  I  F  L  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  A  V  L  S  S  L  K  L  K  K  S  E  V  P  L  F  L  *  Q  V  *  S  V  L  S  W  E  K  L  I  H  N  L  G  Y  S  E  G  I  K  F  L  K  D  T  Q  *  F  L  W  T  R  I  N  S  C  I  L  Y  L  F  C  F  I  L  F  L  F  L  F  I  N  L  I  N  T  N  C  K  N  N  N  L  K  K  F  N  S  F  C  I  *  G  F  W  R  L  K  P  L  *  F  S  T  L  L  E  F  S  K  F  I  R  L  T  I  K  R  T  *  K  L  Y  R  *  I  R  N  S  L  C  K  D  L  F  F  T  V  S  I  L  N  T  *  F  I  C  H  L  *  Q  E  K  K  D  *  F  K  S  N  K  C  W  N  S  K  C  C  N  N  N  G  C  T  *  S  F  K  C  C  L  S  T  G  *  E  T  C  K  V  F  W  S  R  L  *  E  M  A  A  K  D  V  L  L  S  H  Y  V  E  S  A  E  V  H  Q  *  E  C  S  C  Y  V  R  *  N  S  G  *  *  T  I  L  G  N  R  S  M  N  T  L  R  F  F  V  *  K  L  Y  L  E  W  S  A  R  *  S  V  Q  C  V  Q  Q  C  Q  N  L  K  R  T  L  G  C  F  R  K  E  V  Q  N  R  R  C  W  N  E  E  I  H  C  G  K  I  S  E  L  *  D  D  R  Q  *  D  C  R  H  P  S  S  R  I  A  G  H  N  P  *  S  P  C  *  R  I  D  C  E  *  C  F  S  S  G  Y  N  Y  *  K  V  T  S  I  V  E  G  L  *  K  L  L  E  T  Q  T  Q  G  D  D  C  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11SLm0052K14.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77744" stop="78103"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THSDFLCKNYILSGLQDDLYNVYSNAKTSKELWDALEKKYKTEDAGMKKFIVAKFLNYKMIDSKTVVTQVQELQVIIHDLLAEGLIVNDAFQVATIIEKLPPLWKDFKNYLKHKRKEMTV</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11SLm0052K14.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77453" stop="77743"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILNLSVICDRKKKTNSSQTNAGTVSAATTTVAHNRSNAALAPAKKPAKFSGVDFKRWQQKMFFYLTTLSLQKFINENVPVMSDETPADERFLVTEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="78117" PGL_stop="78825"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78117" e_stop="78825"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="78117" e_stop="78825" e_length="709"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78117" stop="78825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324842" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTTGTAATTCAGCAATATCTGGAGTAAGTTTTGTTGAAGAAGATTTCACAAAATTAAAGAAAAGAAAGAAAGCATCTGGTCCAAAAAGCAATCCTCCTAAGAAGAAATTCAATGGAAATTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAAGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGATGATTTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGATTATGGCAAACTCCGTTGTTGCAAAGATGGAAGAAACTCGCAAAGTCCTATTAAAGATTACATCAGGCAAGGTGGTGACTTTGAATAAGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCCGTTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTA</gDNA_template>
            <first_frame> *  G  *  E  S  K  R  I  I  R  L  Q  K  R  G  H  V  V  I  Q  Q  Y  L  E  *  V  L  L  K  K  I  S  Q  N  *  R  K  E  R  K  H  L  V  Q  K  A  I  L  L  R  R  N  S  M  E  I  A  L  I  V  V  N  M  V  I  G  L  M  N  A  G  V  L  R  R  T  R  K  R  K  I  K  Q  T  W  L  N  P  K  E  K  W  M  I  S  V  Q  C  F  Q  N  V  T  W  L  E  I  Q  E  N  G  G  *  I  L  V  P  H  A  M  F  V  P  T  K  N  Y  F  H  H  I  L  Q  H  L  Q  M  K  N  *  L  W  Q  T  P  L  L  Q  R  W  K  K  L  A  K  S  Y  *  R  L  H  Q  A  R  W  *  L  *  I  R  S  H  M  F  Q  N  *  E  R  I  *  F  Q  F  P  F  *  P  R  M  D  L  N  V  Y  L  F  L  I  K  *  *  *  A  K  M  I  C  M  *  E  K  A  T  L  V  M  A  F  S  N  S  M  *  L  Q  L  I  *  I  K  I  L  L  L  L  </first_frame>
            <second_frame>  K  V  E  N  R  R  G  *  *  G  C  R  K  E  V  T  L  *  F  S  N  I  W  S  K  F  C  *  R  R  F  H  K  I  K  E  K  K  E  S  I  W  S  K  K  Q  S  S  *  E  E  I  Q  W  K  L  L  *  L  W  *  T  W  S  *  G  *  *  M  P  G  S  *  E  G  Q  E  K  E  R  S  S  K  L  G  *  I  Q  R  R  N  G  *  F  L  C  N  A  F  R  M  *  L  G  W  K  S  K  R  M  V  D  R  F  W  C  L  M  P  C  L  C  Q  Q  R  I  I  F  I  I  Y  S  S  T  Y  R  *  K  I  D  Y  G  K  L  R  C  C  K  D  G  R  N  S  Q  S  P  I  K  D  Y  I  R  Q  G  G  D  F  E  *  G  L  I  C  S  R  I  E  K  E  F  S  F  N  S  R  S  D  Q  E  W  I  *  M  C  I  C  F  *  *  S  S  S  K  Q  K  *  Y  V  C  R  K  R  L  P  *  *  W  P  F  Q  T  Q  C  N  C  S  *  Y  E  *  R  F  C  F  F  L </second_frame>
            <third_frame>   R  L  R  I  E  E  D  N  K  A  A  E  K  R  S  R  C  N  S  A  I  S  G  V  S  F  V  E  E  D  F  T  K  L  K  K  R  K  K  A  S  G  P  K  S  N  P  P  K  K  K  F  N  G  N  C  F  N  C  G  K  H  G  H  R  A  N  E  C  R  G  P  K  K  D  K  K  K  K  D  Q  A  N  L  A  E  S  K  G  E  M  D  D  F  C  A  M  L  S  E  C  N  L  V  G  N  P  R  E  W  W  I  D  S  G  A  S  C  H  V  C  A  N  K  E  L  F  S  S  Y  T  P  A  L  T  D  E  K  L  I  M  A  N  S  V  V  A  K  M  E  E  T  R  K  V  L  L  K  I  T  S  G  K  V  V  T  L  N  K  V  S  Y  V  P  E  L  R  K  N  L  V  S  I  P  V  L  T  K  N  G  F  K  C  V  F  V  S  D  K  V  V  V  S  K  N  D  M  Y  V  G  K  G  Y  L  S  D  G  L  F  K  L  N  V  I  A  V  D  M  N  K  D  F  A  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11SLm0052K14.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78119" stop="78823"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLRIEEDNKAAEKRSRCNSAISGVSFVEEDFTKLKKRKKASGPKSNPPKKKFNGNCFNCGKHGHRANECRGPKKDKKKKDQANLAESKGEMDDFCAMLSECNLVGNPREWWIDSGASCHVCANKELFSSYTPALTDEKLIMANSVVAKMEETRKVLLKITSGKVVTLNKVSYVPELRKNLVSIPVLTKNGFKCVFVSDKVVVSKNDMYVGKGYLSDGLFKLNVIAVDMNKDFASS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="86779" PGL_stop="86080"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86779" e_stop="86597"/>
            <exon e_start="86514" e_stop="86080"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.975" e_score="0.995"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="86779" e_stop="86597" e_length="183"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.975">
            <gDNA_intron_boundary i_start="86596" i_stop="86515" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="86514" e_stop="86080" e_length="435"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86779" stop="86597"/>
              <exon start="86514" stop="86080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333293" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATCCTGGAATGCATCATGATGAGATTGATTTTGAGTTCCTTGGAGGAGATGGTATATATACATTAAATACAAATATATTTGCAAATGATGGAGGAAGTAGAGAGCAACAATTCAATCTTGATTTTGATCCTACAGAAGATTTCCATACGTATCGAATTCTTTGGAATCAACATCATATCAT : ATTTTACGCGGATAATGTTCCAATAAGAGTTTTCAAGAACAATACTAATTATGGAGTGAATTTTCCAACACACAAAATGCACATTGAAGCAACCATATGGAATGATACAAATTGGGTTGGAGAAGTAGATTGGAGCCAAGGACCATTCAAAGCTTATTATCGCAATTTTACGATTAATGGATGTCAATATCAAGAATCAAATCGTCAAGAATGCTATAATAACAACTATTATTGGAATACAATTACCAGTCTTAGTCCAAATGAAGTTCAGGAATTTGAAACTGTGAAGGCAGAACAAATGATTTTTAGTTATTGCATGAGGAACAATAGTAGAAATTTTCCAGAATGTATATTAAATTGATGAGGATGTTCTTATAGTAATAATAAAGTTAATGAATGCTTGACTAGTGATAACATATTACTAACTTATGTGAG</gDNA_template>
            <first_frame> R  S  W  N  A  S  *  *  D  *  F  *  V  P  W  R  R  W  Y  I  Y  I  K  Y  K  Y  I  C  K  *  W  R  K  *  R  A  T  I  Q  S  *  F  *  S  Y  R  R  F  P  Y  V  S  N  S  L  E  S  T  S  Y  H  :  I  L  R  G  *  C  S  N  K  S  F  Q  E  Q  Y  *  L  W  S  E  F  S  N  T  Q  N  A  H  *  S  N  H  M  E  *  Y  K  L  G  W  R  S  R  L  E  P  R  T  I  Q  S  L  L  S  Q  F  Y  D  *  W  M  S  I  S  R  I  K  S  S  R  M  L  *  *  Q  L  L  L  E  Y  N  Y  Q  S  *  S  K  *  S  S  G  I  *  N  C  E  G  R  T  N  D  F  *  L  L  H  E  E  Q  *  *  K  F  S  R  M  Y  I  K  L  M  R  M  F  L  *  *  *  *  S  *  *  M  L  D  *  *  *  H  I  T  N  L  C  E </first_frame>
            <second_frame>  D  P  G  M  H  H  D  E  I  D  F  E  F  L  G  G  D  G  I  Y  T  L  N  T  N  I  F  A  N  D  G  G  S  R  E  Q  Q  F  N  L  D  F  D  P  T  E  D  F  H  T  Y  R  I  L  W  N  Q  H  H  I  I :   F  Y  A  D  N  V  P  I  R  V  F  K  N  N  T  N  Y  G  V  N  F  P  T  H  K  M  H  I  E  A  T  I  W  N  D  T  N  W  V  G  E  V  D  W  S  Q  G  P  F  K  A  Y  Y  R  N  F  T  I  N  G  C  Q  Y  Q  E  S  N  R  Q  E  C  Y  N  N  N  Y  Y  W  N  T  I  T  S  L  S  P  N  E  V  Q  E  F  E  T  V  K  A  E  Q  M  I  F  S  Y  C  M  R  N  N  S  R  N  F  P  E  C  I  L  N  *  *  G  C  S  Y  S  N  N  K  V  N  E  C  L  T  S  D  N  I  L  L  T  Y  V   </second_frame>
            <third_frame>   I  L  E  C  I  M  M  R  L  I  L  S  S  L  E  E  M  V  Y  I  H  *  I  Q  I  Y  L  Q  M  M  E  E  V  E  S  N  N  S  I  L  I  L  I  L  Q  K  I  S  I  R  I  E  F  F  G  I  N  I  I  S   : Y  F  T  R  I  M  F  Q  *  E  F  S  R  T  I  L  I  M  E  *  I  F  Q  H  T  K  C  T  L  K  Q  P  Y  G  M  I  Q  I  G  L  E  K  *  I  G  A  K  D  H  S  K  L  I  I  A  I  L  R  L  M  D  V  N  I  K  N  Q  I  V  K  N  A  I  I  T  T  I  I  G  I  Q  L  P  V  L  V  Q  M  K  F  R  N  L  K  L  *  R  Q  N  K  *  F  L  V  I  A  *  G  T  I  V  E  I  F  Q  N  V  Y  *  I  D  E  D  V  L  I  V  I  I  K  L  M  N  A  *  L  V  I  T  Y  Y  *  L  M  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11SLm0052K14.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86778" stop="86597"/>
                    <exon start="86514" stop="86154"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DPGMHHDEIDFEFLGGDGIYTLNTNIFANDGGSREQQFNLDFDPTEDFHTYRILWNQHHIIFYADNVPIRVFKNNTNYGVNFPTHKMHIEATIWNDTNWVGEVDWSQGPFKAYYRNFTINGCQYQESNRQECYNNNYYWNTITSLSPNEVQEFETVKAEQMIFSYCMRNNSRNFPECILN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 24 chains have been computed
$ 
$ memory statistics:
$ 20600 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 2942 bytes was the average size of a spliced alignment
$ 13096 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1870 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 33 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 05:34:51
-->
