<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 05:34:55"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11SLm0052K14-Gnxja/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11SLm0052K14-Gnxja/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11SLm0052K14-Gnxja/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8203" ref_strand="+" ref_description="SGN-M8203 C2_At4g09620 [cosii_markers]">
      <seq>gttggtcttcctgtcccaattgagtgtagagctcagccgtttcaacattttcttgtgcttcccattcatttcttgaagcagagctggaatctgaattctgagggatgctaggaaaatcatttgctactcctgtgctgacctttaactctgcatcatgcttctcctctcctggttatgattccgtctcaacaacagctaacactctagtagggtatgtaaattgctcgagtagcattacatttaatgttactaggggatcttggacgtccaattatccatccaagaaatggacgttgcattcagcagctactgacaatatagtattaactgaagaagagaagaaaacgtggaactatagcagacaagctctttctgcattaaaatttagcccagaggaagaagacaaaatattaggaaaagcatttggccacatacattcgccttactggtatgaagaacggaagaaagaggttccacgactagaagttgtgaacgagatactggattatctaaggagtttaagccttactgatgatgatctcactaaacttgtcaagaaattcccagaagttcttggatgtagccttgaagatgaaatgaaaaccaatgtcgaaattctggcaaaacaatggggaattgaaggtaaaactctgagaaatttgcttcttcgaaatccaaaagttttaggctacaatgtcgattgcaaaggtgattgtgtggctaaatgcactcgctgttgggctcgattctagctgcattcttgtttttcatcctctatacctttctttatgtataactttcgtcaaccattttatctaattattcaatatcgaaagtaaattcatacaattctgtattgcactgatatgtgactcaagtttagatcacaaaggatgttacagagagaatgaatgaaaaaaatcagagcaatttttataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11SLm0052K14-Gnxja/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11SLm0052K14.1" temp_strand="+" temp_description="C11SLm0052K14.1  AC220061.1 htgs_phase:3 submitted_to_sgn_as:gi|170933591|gb|AC220061.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11SLm0052K14, complete sequence">
        <position start="38876" stop="44219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39175" g_stop="39276" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39277" i_stop="41007" i_length="1731">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41008" g_stop="41078" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="173" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41079" i_stop="43152" i_length="2074">
            <donor d_prob="0.747" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43153" g_stop="43919" g_length="767"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="939" r_length="766" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="940" polyA_stop="951"/>
      <MATCH_line gen_id="C11SLm0052K14.1" gen_strand="+" ref_id="SGN-M8203" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>940</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11SLm0052K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39175" e_stop="39276"/>
          <exon e_start="41008" e_stop="41078"/>
          <exon e_start="43153" e_stop="43919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGTCTTCGTGTCCCAATTGAGTGTAGAGCTCAGCTGTTTCAACATTTTCTTGTGCTTCCCATTCATTTCTTGAAGCAGAGCTGGAATTTGAATTCTGAGGTAGACTTCTAACTTTTCCTTTGTAGTATTTGTTTTGGAGTTTTGGGTGTTCCTTTATTTGGGTTGGATTGAACCCTTCTATGCCTTGGAAGCTTTCTGCTTGTGAATTTGTTCTCCAATTCCTTTTAGTAAGTTGTTTTCCTCATATATTGATTGTTTATCTTTGGACAAGGTTGCTGCTTAAAGTTTGTGCATTTGGGTTTCACTCAAATATTTTAGGGCACTTGTTTAACTGAAAGTTGGGTTGATGCATAAGGAAATTGGTAGGGTACAAGAAGATGAAAACAAGGTTTAATCTTGGTTATGTATTCCGTTCCGAATAAATAACAAGGTACTTCGGTTAGGAGTGGGAACAAGTTATCGTGGGATTAGTTATTCCACCGTTTACATGGGATAACTTATTCCATTACTAAAGTATGAATGGTGGGATAGATTATCTGGAAAAAGGACAAATATACCTCCGAACTATTGTAAATGGTACGTAGATACTCTCCGTCATACTTTTGAGACATTGATGTCCCTGTCGTCCAAAAACTAGAGCGTACATGCATACACTCTAACGAAAGACTAAACAGGGACACACGACACAATCTTATCCATCTATCCGATGTCAGGTCGTTGGATAAGATTATGACACATGTATGTCCGTTAGTATAAAGAGTATATATACGCTGGTTATTTGACAGTAGTATCCCTAAAGTATGACGAAGGATATCTGCATACCATTTACGATCAAAGTTCGGGGGTATATTTGTCCTTTTTCCCTAAATAATCCCATGACGGCCTAATACCTCCAACCAAACACAAGATAAGATATTACTATACCTTATACCTCACACTATACGACTCCTAATAGTTTAAGAGTGAAAGTTTCTGAACCATTCATGAACATTGCAGTGAAAATGATTATAATGTGAGAAGGTCAAATGATATACATAGACAGACACTAAGCAAATGCTGATTGTGAGTTTGAGTTATTTGACATGTGAGTTATCGGGGGAAAAATTGAGTTAGAGAGAAATTAAGTATTACTACTTGGTATCAAATTAGAACTCATGTATGTATGTATGTATGTATGTATAACAAGTGGTTATTAAGAAAAGACGAAAGAAAATTGGATAATCGACTTGTCATCATTCCAAATAAGAGTAGTTGTTGCAGTACTCTGTGAAGAGGATTAATTGTATAAAGGTTGGGATAAAGTGGTGAGTTTGTTCCAAAATAGTTTACAAAAAATATAAATCTTTGGTCTCATTCTCAACACTGAGATATATACCACAAAACTTATAAGTAGATGACTTGATTCAAAAGGATTGTCTTGGTAATGTGGATTCTGTATGTTATGTTTCTTGATTCTATGTACCTGATTGTAAGTGCTGCAATACCATGATACAACGATGATTCGACTTGTTCTCATGTCATTTATTAGAGAATGTTATTTTATAGTGGGTCCTTACTTTATCCAAACAAATTCAATAGTTCTTCTATTGCTGCTGGAAAGTACAAATTCAGTAGTTGTTTTATACTCTATTTTTTATAAGCGAGATATAGGTTTTGGATTTAAGCAGTTTTATGGCATGAAAATTTCAGTTTCTGAGTGCATTTCTGAAGTCCCACATTGTTACATGTCCTACCTTTGTGTTCTATATGGGCTGCGAAAAGTTCGACGTTTCTTTTAGGTCTTCGAATGTCTTCCATATCTACTCATTCAGCCTGTGCTTTATGGTGCAGGGATGCTAGGAAAATCATTTGCTACTCCTGTGCTGACCTTTAACTCTGCATCATGCTTCTCCTCTCCTGGTGTGAGTATAACTTCTTACATTTTTGTAGTGGCCGTTGAGTGGTTAGATTCGTCACAAGGGGTGGAATTTGATCCCAAGATTCATCAGTTTATATTCTCTACTTCTTACTGCTTATATGAATGAGATTTTTCAGCATTAATAAAATTATTTACCATATCAAAAAAGATTCGTAAGTTATGGCTGGGGTCATTAGATCCAAATTACTATGCTAATCACGTCATGTTCTATTTCTTTCTTTTATTACTCCGTCCTACTTTATGTGACGATACTAGTTTTATACAGAGTAGACAATGCTAATTTGTCTTATATAATATAATAGTAACAAGGATCCTTCAAGGACATCTGATAGCAAAGTTATGCTTATATCAGTTGTAATGAGAGGATATATTACAATATCGGTTGGAAAATAGATACAGAAAACATCACATCAATGGTAATAGTTAAATAACTTTTATATCCTGAAAGTTGTGTATAATAATTGTATTAATGGAGCACCGAGGGTGTTGTATACTAGTCAATGAAGTGGGTAATAATCATGAGAGAGTAGGGTTCAAATGTCAGCACACACAAAAATGCTATGTGTTTTTTCCCATTAGTCTAAGTTTTGGGGGTACAGAGTGAACGATATATGTACTTGGAGATAACAGGTATCCAATGGAATAGTCGAGGTGTGCCAAGTGGTCTGGAACTGCTACAAGAGAAAGTATTAATGGAATGGAGTCAAATAATTTGAAATGAACAAAATTGCAAGTGTGTCATACAAATTGTAATTGAGAGTTTTCATTTTTAAAGTTATGAATCAATTAACTAATTTTATCTTTGTTATCACTCATACTTGTGACTTACAAACTCGGTGAACTTGTAATAACAACAACAACATACCCCGTGTAAGCTCAGAAAGTGGGGTTCGGGGAGGGTAAAGTGTATGCAGACTTTATCACTACCTTGAAGGTAGAGTAATGTTTCCATTAGACCCTTAGTTCAAGGAAAAAAAATCTAAAACAGTATAGAGAGATAAATGACGGAAATGAAGAAAGTCATGGCAAATATTATAAGACAACCTGACAAATCATCCTAAACAGTAGTCATAATAAGATAAAACAATAATCGAAGGGTAAAAAACCAGATATAATAACCAAACTCAAAGAAAAAGAAACTACAAGAGTAATACTATCACTAATAGTACGACTAATAGTATAAAAGAATAAGCGAGACAATGCTCAACTATCTAACTAACTTCCTACCCTTATCCATGTCCTCTAGTACCTCATATCTAAGGTCAGCTGAAGCTGCGTTATATCCTGGCTAATCACCTCTCTGCATTACTTCTTCGGCGTACCGCCACCCTTCTATCCATAGCCAAACTTCTGTGAACTTGTGATGTTACAAAATCTTCAGCTAGTCTATTTTTGTGGAACATCTATGAAATGAATTATAGGGAAGTAAATAGCAATTTTGTGACATGTTTTGGTATGAGAAGGGGCTGAAAAGAGCAGAATAAACAAATTTTAAAAGGTGTTTTATAGCCGACCTCAACTTATTTGGGAATGAGCGTAGTTGATTAATGGATCAATTGATTCTTTCAGATTTGAACCTCAGAAAGAATGCATGCTGTTAAGTTGAGTTCTTTTTTTTGTTGTTGGCCTTACATTTTAAAACCAGTCTCTCAGACTTGAAGTTTGTCCAGCCAGTAGTTAAGATATAGTCTAAGCACTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCAGGGTTTTACCCTGTGCGTACCCAAAAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCATCAAAAAAAAAGAAAAGAAAAAAAAAAGATTCAGTCTAAGGACAGATCATTACGCAGGTAATGTTAATTTAATAGCTGTGTGGTTGATGATTTTTAGCGAATGATTATCTGAGGATTCATATATCCGGACAACTAGTTTTTAGTCGTGGAATAGTTGGTTTTCTTGATAACGGTAAATCTTTCATTCTATGATGTTCAGTCTTCTATATAACCCTAATATATTCTCTGGTGAAAACATAGCTCATACTTTCTGTTTCTTACTCTACAGTGTGAGTCCATCTCAACAACAGCTAACACTCTAGTAGGGTATGTAAATTGCTCGAGTAGCATTACATTTAATGTTACTAGGGGATCTTGGACGTCCAATTATCCATTCAAGAAATGGACGTTGCATTCAACAGCTACTGACAATATAGTATTAACTGAAGAAGAGAAGAAAACGTGGAACGATAGCAGACAAGCTCTTTCTGCGTTAAAATTTAGCCCAGAGGAAGAAGACAAAATATTAGGAAAAGCATTTGGCCACATACATTCGCCTTACTGGTATGAAGAACGGAAGAAAGAGGTTCCACGACTAGAAGTTGTGAACGAGATACTGGATTATCTAAGGAGTTTAAGCCTTACTGATGATGATCTCACCAAACTTGTCAAGAAATTCCCAGAAGTTCTTGGATGTAGCCTTGAAGATGAAATGAAAACCAATGTCGAAATTCTGGAAAAACAATGGGGAATTGAAGGTAAAACTCTGAGAAATTTGCTTCTTCGAAATCCAAAAGTTTTAGGCTACAATGTCGATTGCAAAGGTGATTGTGTGGCTAAATGCACTCGCTGTTGGGCTCGATTCTAGCTGCATTCTTGTGTTTCATCCTCTATACCTTTCTTTATGTATAACTTTCGCCAACCATTTTATCTAATTATTCAAAATCGAAAGTAAATTCATACAAGTCTGTATTGCACTGATATGTGACTCAAGTTTAGATCACAAAGGATGTTACAGAGACAATGAAATGAAAAAAATCAGAGCAATTTTTATAA</genome_strand>
        <mrna_strand>GTTGGTCTTCCTGTCCCAATTGAGTGTAGAGCTCAGCCGTTTCAACATTTTCTTGTGCTTCCCATTCATTTCTTGAAGCAGAGCTGGAATCTGAATTCTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCTAGGAAAATCATTTGCTACTCCTGTGCTGACCTTTAACTCTGCATCATGCTTCTCCTCTCCTGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGATTCCGTCTCAACAACAGCTAACACTCTAGTAGGGTATGTAAATTGCTCGAGTAGCATTACATTTAATGTTACTAGGGGATCTTGGACGTCCAATTATCCATCCAAGAAATGGACGTTGCATTCAGCAGCTACTGACAATATAGTATTAACTGAAGAAGAGAAGAAAACGTGGAACTATAGCAGACAAGCTCTTTCTGCATTAAAATTTAGCCCAGAGGAAGAAGACAAAATATTAGGAAAAGCATTTGGCCACATACATTCGCCTTACTGGTATGAAGAACGGAAGAAAGAGGTTCCACGACTAGAAGTTGTGAACGAGATACTGGATTATCTAAGGAGTTTAAGCCTTACTGATGATGATCTCACTAAACTTGTCAAGAAATTCCCAGAAGTTCTTGGATGTAGCCTTGAAGATGAAATGAAAACCAATGTCGAAATTCTGGCAAAACAATGGGGAATTGAAGGTAAAACTCTGAGAAATTTGCTTCTTCGAAATCCAAAAGTTTTAGGCTACAATGTCGATTGCAAAGGTGATTGTGTGGCTAAATGCACTCGCTGTTGGGCTCGATTCTAGCTGCATTCTTGTTTTTCATCCTCTATACCTTTCTTTATGTATAACTTTCGTCAACCATTTTATCTAATTATTCAATATCGAAAGTAAATTCATACAATTCTGTATTGCACTGATATGTGACTCAAGTTTAGATCACAAAGGATGTTACAGAGAGAATG-AATGAAAAAAATCAGAGCAATTTTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>1</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="39175" PGL_stop="43919"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39175" e_stop="39276"/>
            <exon e_start="41008" e_stop="41078"/>
            <exon e_start="43153" e_stop="43919"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.982" e_score="0.961"/>
          <exon-intron don_prob="0.747" acc_prob="0.881" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="39175" e_stop="39276" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.982">
            <gDNA_intron_boundary i_start="39277" i_stop="41007" i_length="1731"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41008" e_stop="41078" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.747" acc_prob="0.881">
            <gDNA_intron_boundary i_start="41079" i_stop="43152" i_length="2074"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="43153" e_stop="43919" e_length="767"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39175" stop="39276"/>
              <exon start="41008" stop="41078"/>
              <exon start="43153" stop="43919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8203" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTGGTCTTCGTGTCCCAATTGAGTGTAGAGCTCAGCTGTTTCAACATTTTCTTGTGCTTCCCATTCATTTCTTGAAGCAGAGCTGGAATTTGAATTCTGAG : GGATGCTAGGAAAATCATTTGCTACTCCTGTGCTGACCTTTAACTCTGCATCATGCTTCTCCTCTCCTGGT : TGTGAGTCCATCTCAACAACAGCTAACACTCTAGTAGGGTATGTAAATTGCTCGAGTAGCATTACATTTAATGTTACTAGGGGATCTTGGACGTCCAATTATCCATTCAAGAAATGGACGTTGCATTCAACAGCTACTGACAATATAGTATTAACTGAAGAAGAGAAGAAAACGTGGAACGATAGCAGACAAGCTCTTTCTGCGTTAAAATTTAGCCCAGAGGAAGAAGACAAAATATTAGGAAAAGCATTTGGCCACATACATTCGCCTTACTGGTATGAAGAACGGAAGAAAGAGGTTCCACGACTAGAAGTTGTGAACGAGATACTGGATTATCTAAGGAGTTTAAGCCTTACTGATGATGATCTCACCAAACTTGTCAAGAAATTCCCAGAAGTTCTTGGATGTAGCCTTGAAGATGAAATGAAAACCAATGTCGAAATTCTGGAAAAACAATGGGGAATTGAAGGTAAAACTCTGAGAAATTTGCTTCTTCGAAATCCAAAAGTTTTAGGCTACAATGTCGATTGCAAAGGTGATTGTGTGGCTAAATGCACTCGCTGTTGGGCTCGATTCTAGCTGCATTCTTGTGTTTCATCCTCTATACCTTTCTTTATGTATAACTTTCGCCAACCATTTTATCTAATTATTCAAAATCGAAAGTAAATTCATACAAGTCTGTATTGCACTGATATGTGACTCAAGTTTAGATCACAAAGGATGTTACAGAGACAATGAAATGAAAAAAATCAGAGCAATTTTTATAA</gDNA_template>
            <first_frame> I  G  L  R  V  P  I  E  C  R  A  Q  L  F  Q  H  F  L  V  L  P  I  H  F  L  K  Q  S  W  N  L  N  S  E  :  G  C  *  E  N  H  L  L  L  L  C  *  P  L  T  L  H  H  A  S  P  L  L  V :   V  S  P  S  Q  Q  Q  L  T  L  *  *  G  M  *  I  A  R  V  A  L  H  L  M  L  L  G  D  L  G  R  P  I  I  H  S  R  N  G  R  C  I  Q  Q  L  L  T  I  *  Y  *  L  K  K  R  R  K  R  G  T  I  A  D  K  L  F  L  R  *  N  L  A  Q  R  K  K  T  K  Y  *  E  K  H  L  A  T  Y  I  R  L  T  G  M  K  N  G  R  K  R  F  H  D  *  K  L  *  T  R  Y  W  I  I  *  G  V  *  A  L  L  M  M  I  S  P  N  L  S  R  N  S  Q  K  F  L  D  V  A  L  K  M  K  *  K  P  M  S  K  F  W  K  N  N  G  E  L  K  V  K  L  *  E  I  C  F  F  E  I  Q  K  F  *  A  T  M  S  I  A  K  V  I  V  W  L  N  A  L  A  V  G  L  D  S  S  C  I  L  V  F  H  P  L  Y  L  S  L  C  I  T  F  A  N  H  F  I  *  L  F  K  I  E  S  K  F  I  Q  V  C  I  A  L  I  C  D  S  S  L  D  H  K  G  C  Y  R  D  N  E  M  K  K  I  R  A  I  F  I  </first_frame>
            <second_frame>  L  V  F  V  S  Q  L  S  V  E  L  S  C  F  N  I  F  L  C  F  P  F  I  S  *  S  R  A  G  I  *  I  L  R :   D  A  R  K  I  I  C  Y  S  C  A  D  L  *  L  C  I  M  L  L  L  S  W   : L  *  V  H  L  N  N  S  *  H  S  S  R  V  C  K  L  L  E  *  H  Y  I  *  C  Y  *  G  I  L  D  V  Q  L  S  I  Q  E  M  D  V  A  F  N  S  Y  *  Q  Y  S  I  N  *  R  R  E  E  N  V  E  R  *  Q  T  S  S  F  C  V  K  I  *  P  R  G  R  R  Q  N  I  R  K  S  I  W  P  H  T  F  A  L  L  V  *  R  T  E  E  R  G  S  T  T  R  S  C  E  R  D  T  G  L  S  K  E  F  K  P  Y  *  *  *  S  H  Q  T  C  Q  E  I  P  R  S  S  W  M  *  P  *  R  *  N  E  N  Q  C  R  N  S  G  K  T  M  G  N  *  R  *  N  S  E  K  F  A  S  S  K  S  K  S  F  R  L  Q  C  R  L  Q  R  *  L  C  G  *  M  H  S  L  L  G  S  I  L  A  A  F  L  C  F  I  L  Y  T  F  L  Y  V  *  L  S  P  T  I  L  S  N  Y  S  K  S  K  V  N  S  Y  K  S  V  L  H  *  Y  V  T  Q  V  *  I  T  K  D  V  T  E  T  M  K  *  K  K  S  E  Q  F  L  * </second_frame>
            <third_frame>   W  S  S  C  P  N  *  V  *  S  S  A  V  S  T  F  S  C  A  S  H  S  F  L  E  A  E  L  E  F  E  F  *   : G  M  L  G  K  S  F  A  T  P  V  L  T  F  N  S  A  S  C  F  S  S  P  G  :  C  E  S  I  S  T  T  A  N  T  L  V  G  Y  V  N  C  S  S  S  I  T  F  N  V  T  R  G  S  W  T  S  N  Y  P  F  K  K  W  T  L  H  S  T  A  T  D  N  I  V  L  T  E  E  E  K  K  T  W  N  D  S  R  Q  A  L  S  A  L  K  F  S  P  E  E  E  D  K  I  L  G  K  A  F  G  H  I  H  S  P  Y  W  Y  E  E  R  K  K  E  V  P  R  L  E  V  V  N  E  I  L  D  Y  L  R  S  L  S  L  T  D  D  D  L  T  K  L  V  K  K  F  P  E  V  L  G  C  S  L  E  D  E  M  K  T  N  V  E  I  L  E  K  Q  W  G  I  E  G  K  T  L  R  N  L  L  L  R  N  P  K  V  L  G  Y  N  V  D  C  K  G  D  C  V  A  K  C  T  R  C  W  A  R  F  *  L  H  S  C  V  S  S  S  I  P  F  F  M  Y  N  F  R  Q  P  F  Y  L  I  I  Q  N  R  K  *  I  H  T  S  L  Y  C  T  D  M  *  L  K  F  R  S  Q  R  M  L  Q  R  Q  *  N  E  K  N  Q  S  N  F  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11SLm0052K14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39276" stop="41078"/>
                    <exon start="43153" stop="43731"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMLGKSFATPVLTFNSASCFSSPGCESISTTANTLVGYVNCSSSITFNVTRGSWTSNYPFKKWTLHSTATDNIVLTEEEKKTWNDSRQALSALKFSPEEEDKILGKAFGHIHSPYWYEERKKEVPRLEVVNEILDYLRSLSLTDDDLTKLVKKFPEVLGCSLEDEMKTNVEILEKQWGIEGKTLRNLLLRNPKVLGYNVDCKGDCVAKCTRCWARF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 3 chains have been computed
$ 
$ memory statistics:
$ 1768 bytes spliced alignments in total
$ 1 spliced alignments have been stored
$ 1768 bytes was the average size of a spliced alignment
$ 5592 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5592 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 3 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 05:35:00
-->
