<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 06:04:30"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316032" ref_strand="+" ref_description="SGN-U316032        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: AT2G42280.1 | Symbol: None | basic helix-loop-helix (bHLH) family protein | chr2:17618328-17620597 REVERSE | Aliases: T24P15.19, T24P15_19 (evalue: 1e-32, score=135) genbank/nr: gi|19401700|gb|AAL87667.1| transcription factor RAU1 [Oryza sativa](evalue: 8e-33, score=142)">
      <seq>agttccaacaagattcagtgcctgcaaaaatacgtgttaaacgaggctgtgctacgcacccacgaagtattgcagaaaggatgagatgtactcggattagtgaaagaatgaaaaaactgcaagatcttttcccaaatatggacaagcaaacaaacacagctgatatgttagatttggcagttgattacattaaagaccttcagaaacaagtccagacactgaccgataaaaaggcgaaatgctcgtgtacaagtaagcagctgcaatattcaaatggaacaacatgaaatagtcttgtgtacagatagtaataggtgaagttagatggaaaaggagagtaaataaactctctttctaccctaatatgctggaaatatggttctactttgtttttattttgcaacaaggcaagtgtagttttcaatgtattattgagtttgattagatctaataacagtctagtgagtacaatctagatgtataggagcacatgattattgtattatgctgttgtttattggaatttaactatgttattagttgattcaaaactttataagacaaataatatcgattggaaagagtaattccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="1" stop="1281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52" g_stop="131" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132" i_stop="257" i_length="126">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258" g_stop="323" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="146" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="324" i_stop="420" i_length="97">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="421" g_stop="489" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="215" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="490" i_stop="595" i_length="106">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="596" g_stop="963" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="583" r_length="368" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="592" polyA_stop="623"/>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-U316032" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52" e_stop="131"/>
          <exon e_start="258" e_stop="323"/>
          <exon e_start="421" e_stop="489"/>
          <exon e_start="596" e_stop="963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCCAACAAGATTCAGTGCCTTGCAAAATACGTGCTAAACGAGGCTGTGCTACGCACCCACGAAGTATTGCAGAAAGGGTAAAAATTCTGTCTTGTTTACCTAGTTTTCCGATTAATCATTATGTTTATACTTGAAGTGCATAACTATGATGAAACTTGTTGTTCGCGTTAAGTTCTCATTTTCTTGTTTAACAATTTGTGTAGATGAGACGTACTCGGATTAGTGAAAGAATGAAAAAACTGCAAGATCTTTTCCCAAATATGGACAAGGTAAATTCTAGTCATGTTTGTTGTATCAATCAATTTTTGTCTAAAAGAAGGTAGAAAGAACTCAACTCACATGTTCTCTTATTGAATGAAATGGCAGCAAACAAACACAGCTGATATGTTAGATTTGGCAGTTGATTACATTAAAGACCTTCAGAAACAAGTCCAGGTAATGACCAAAAAAAGTGTTTTTTCTCCATGAAGTACTCACATGAATCAATCTCTCAAGCAACATTTATATCTTCTTTACCAAATTTACACTTATTTAATGCCAGACACTGACCGATAAAAAGGCGAAATGCTCGTGTACAAGTAAGCAGCTGCAATATTCAAATGGAACAACATGAAATAGTCTTGTGTACAGATAGTAATAGGTGAAGTTAGATGGAAAAGGAGAGTAAATAAACTCTCTTTCTACCCTAATATGCTGGAAATATGGTTCTACTTTGTTTTTATTTTGCAACAAGGCAAGTGTAGTTTTCAATGTATTATTGAGTTTGATTAGATCTAATAACAGTCTAGTGAGTACAATCTAGATGTATAGGAGCACATGATTATTGTATTATGCTGTTGTTTATTGGAATTTAACTATGTTATTAGTTGATTCAAAACTTTATAAGACAAATAATATCGATTGGAAAGA</genome_strand>
        <mrna_strand>AGTTCCAACAAGATTCAGTGCCTGCAAAAATACGTGTTAAACGAGGCTGTGCTACGCACCCACGAAGTATTGCAGAAAGG..............................................................................................................................ATGAGATGTACTCGGATTAGTGAAAGAATGAAAAAACTGCAAGATCTTTTCCCAAATATGGACAAG.................................................................................................CAAACAAACACAGCTGATATGTTAGATTTGGCAGTTGATTACATTAAAGACCTTCAGAAACAAGTCCAG..........................................................................................................ACACTGACCGATAAAAAGGCGAAATGCTCGTGTACAAGTAAGCAGCTGCAATATTCAAATGGAACAACATGAAATAGTCTTGTGTACAGATAGTAATAGGTGAAGTTAGATGGAAAAGGAGAGTAAATAAACTCTCTTTCTACCCTAATATGCTGGAAATATGGTTCTACTTTGTTTTTATTTTGCAACAAGGCAAGTGTAGTTTTCAATGTATTATTGAGTTTGATTAGATCTAATAACAGTCTAGTGAGTACAATCTAGATGTATAGGAGCACATGATTATTGTATTATGCTGTTGTTTATTGGAATTTAACTATGTTATTAGTTGATTCAAAACTTTATAAGACAAATAATATCGATTGGAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335446" ref_strand="+" ref_description="SGN-U335446        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G42280.1 | Symbol: None | basic helix-loop-helix (bHLH) family protein | chr2:17618328-17620597 REVERSE | Aliases: T24P15.19, T24P15_19 (evalue: 7e-05, score=44.7) genbank/nr: gi|19401700|gb|AAL87667.1| transcription factor RAU1 [Oryza sativa](evalue: 6e-06, score=54.3)">
      <seq>ttttttttttttttttttactctttccaatcgatattatttgtcttataaagttttgaatcaactaataacatagttaaattccaataaacaacagcataatacagtattgatgcgctcctatacatctagattgcactcactagactgttattagatctaatcaaactcaataatacattgaaaactacacttggcttgttgcaaaataaaaacaaagtagaaccatatttccagcatattagggtagaaagagagtatatttactatcctttttcatcttagtacacctattactatgtgtacacaagactatgtcatgtgtgtccatttgaatattgcagctgcttacttgtgcacgagcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="1267" stop="318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="983" g_stop="618" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-U335446" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="983" e_stop="618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGTGATTTTGGAATTACTCTTTCCAATCGATATTATTTGTCTTATAAAGTTTTGAATCAACTAATAACATAGTTAAATTCCAATAAACAACAGCATAATACAATAATCATGTGCTCCTATACATCTAGATTGTACTCACTAGACTGTTATTAGATCTAATCAAACTCAATAATACATTGAAAACTACACTTGCCTTGTTGCAAAATAAAAACAAAGTAGAACCATATTTCCAGCATATTAGGGTAGAAAGAGAGTTTATTTACTCTCCTTTTCCATCTAACTTCACCTATTACTATCTGTACACAAGACTATTTCATGTTGTTCCATTTGAATATTGCAGCTGCTTACTTGTACACGAGCATT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTACTCTTTCCAATCGATATTATTTGTCTTATAAAGTTTTGAATCAACTAATAACATAGTTAAATTCCAATAAACAACAGCATAATACAGTATTGATGCGCTCCTATACATCTAGATTGCACTCACTAGACTGTTATTAGATCTAATCAAACTCAATAATACATTGAAAACTACACTTGGCTTGTTGCAAAATAAAAACAAAGTAGAACCATATTTCCAGCATATTAGGGTAGAAAGAGAGTATATTTACTATCCTTTTTCATCTTAGTACACCTATTACTATGTGTACACAAGACTATGTCATGTGTGTCCATTTGAATATTGCAGCTGCTTACTTGTGCACGAGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339313" ref_strand="+" ref_description="SGN-U339313        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: SJCHGC09205(evalue: 2e-05, score=52.4)">
      <seq>caaattacatatcctcaacaacaacacttcaacaaattacatatcctcaacaagaatagttcaacaaattatatatccgccataacaagctcaatattaatcaatcacaagttctgcagaaaggcaataagaagatcgagaaaatacgatatcaagttcactaatgataagtgtgtaatgcaatggaatgcaatgtcaagtataatgatgcatgtctgacctagtgatatacacccgctgtctctcagtccgggacccttgggggacatatctgtccatgcatctgtcgcggcgcacgacacgatcctcgataatagtaaccatcacggcgcgcgatacgttcctcgaaatatagtatccatcgcggcgcgcgatacgtccctcgaaatggtacatcctcttaagtacccattatttctcaatgcacataacacttgccacaaccaatgcctcagaataatgcagatgacaagttcacacatataatgaggagatgaccattttcataacatcctacagttcacaaccacacaaacatcaagttacatcaacaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="3846" stop="4957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4146" g_stop="4657" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="557" r_length="512" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-U339313" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4146" e_stop="4657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACAACAACACTTAGACAAATTACATATCCGCAATAACAAGCTCAATATTGATCAATCGCAAGTTCCGCAGAAAGGCAATCAGAAGATCAGCAAAATACGATACCAAGTTCACTAATGATAAGTATGTGCAATGCAATGGAAAGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACACGAACCTCGATAATAGTAACCATCGCGGCGCGCGATACGTCCCTTGAAATATAGTATCCAT--CGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTCTTTCTCAATGCACATAACACTTGTCACAACCAATGCCTCAGCATAATGCAGATGAGAAGTTCACACAAGTAATGAGGAGATGACCATTTTCATAACATCGCACAGTTCACAACCACACAAACATGAAGTTACATCAACAATGA</genome_strand>
        <mrna_strand>CTCAACAAGAATAGTTCAACAAATTATATATCCGCCATAACAAGCTCAATATTAATCAATCACAAGTTCTGCAGAAAGGCAATAAGAAGATCGAGAAAATACGATATCAAGTTCACTAATGATAAG--TGTGTAATGCAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATATACACCCGCTGTCTCTCAGTCCGGGACCCTTGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACACGATCCTCGATAATAGTAACCATCACGGCGCGCGATACGTTCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTATTTCTCAATGCACATAACACTTGCCACAACCAATGCCTCAGAATAATGCAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTTCATAACATCCTACAGTTCACAACCACACAAACATCAAGTTACATCAACAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329883" ref_strand="+" ref_description="SGN-U329883        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: hypothetical(evalue: 8e-06, score=45.1)">
      <seq>tctcacgcccacccaaccccgatccacccctgatcggcgcccatcccacccattccgaccggcgctgcatagatcagcagcagcaggaggtcgcgccaccttccccgaccggagctccgtgcgcctcgatcagcagcagcagcagcaggaggaggaggtcgcagcatcaccgcagaggcggcagcagcaacagcaaattccggcagattagtgatttagcttcagccggaaattgatcttcaatgtcaggagaagttcagatgagttcagaaaagcaaccacgaagaggactgtcatgcacccgttacttcgatgcactctggttctgctactgaaattttagaaacacgcgagaaagcgaagcctcacctgtggtcaacacgaacccctgaagaagccgcagcttattggagcgaactctttgaccatctagatgaagagtaaaactcttaagaccttttcatcagacatttgctcaatcaatacgagaaagtttattatatcatttgaaataatcttctccccaatgatgcttgtttcaaacatgtcttagaggcaccatggttatcaaagtgggtttctaaagaggcaccagtttaggaatgtttagaataggaacattgtgtaggaaaatcttctttttccttgagtgattgaagcagcataaacaaattccaacaatcttaaacgtcagagtaacaccaccttctgattcagatgaactgtggagcttatcattgcattataaagagatggaacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="19617" stop="10369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19317" g_stop="19107" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19106" i_stop="15473" i_length="3634">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.405" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15472" g_stop="15351" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="333" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15350" i_stop="11101" i_length="4250">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11100" g_stop="10666" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="768" r_length="435" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-U329883" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19317" e_stop="19107"/>
          <exon e_start="15472" e_stop="15351"/>
          <exon e_start="11100" e_stop="10666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCACGCCCACCCAACCCCGATCCACCCCTGATCGGCGCCCATCCCACCCATTCCGACCGGCGCTGCATAGATCAGCAGCAGCAGGAGGTCGCGCCACCTTCCCCGACCGGAGCTCCGTGCGCCTCGATCAGCAGCAGCAGCAGCAGGAGGAGGAGGTCGCAGCATCACCGCAGAGGCGGCAGCAGCAACAGCAAATTCCGGCAGATTAGGTAGTGTAATCAAGCTCTTTTATTGTAATTATTTTATAGGGTTGGATGATATTATTATTAGTATGTATTGCTGGAAGTTTGGATAAAAATAATAAACAAGTGTCATCAATAGGTTGGGTTGAACAAATTGAAGGGTTGATTCAATTGAATTTGGTTGTTGTTCAATGTGGATCCTTTGGTTGAGTTTATACACTTCAAAATTTGAACACTTAAATGTGTTCAATTGAGTTTGATTGCTCGTTCTCTTTGATTAACTGTTAAGTGCCAAACTTTCCCATAAGGATGTTGATTTTGGCAAGTTGGACAGTCAATATATTGAAAACGGTTAGAGAATGTTAGTGCATGTTGAATTTTTGTCTAAATTAGTATTTTGCTGTTACAGAGTATCTATGTTTTAGTTGCTCTAATAAACTAGTGACAGTTGCTCTAACAAACTAACCAATACAACATATGCCCATGTCATCATATACAATTCTACCTTTCCAATATTGGACAGTCATACCAATTACATGTGTATGCCTTACAATTCTAACATATACATTACAATAACTAGTGGAAAAAAGAGAGGAAGTATTAAAAATAGGAGAAACCTATTTTGAATTATCAAGAAAACAAAAAAACAACACAAACTTGTTCACTAAGTGTCAACTGTTAATGTTAATAATGACTGAAATCTCTCTATGATGACCACTAAAGAAATTTTCAATTGTTTCTTTTCGCGCTAGGCAACTGAGGAAGCTTAACATCTAAAAAAGTTGATACAAGACTATACTACTTCTTTCATCAAATAGCAGATAAGGTTCGGTGTTTCTAAATTTTTGAAGTTCAAGTACAACTGATTTTTTAATGTGTTTGTGTCCATCTAGTATTGATACTTAACTTTAATTTTGTAATAGTTTATTTGTGTCCATCGAGTGCTTGTTTAGCATAAGTACCAACACTAGTTGATCCCATTGATTACAAAATTGATTTTCTTGCAAAATCGATTTGTGCCCATCTAGTGTTGACACTAAGCTTCAAATTTAGAAATAATATATTTGTTAAGCATAAGTACCAACACTAGTTGATCCTATTGATGACAAAATTGATTTTGTTGCAAGATTTATTTGTGTTCATCTAGTGTTGATATTAAGCTTTAATTTAGGAATAATGTGTTTGTTAAGCATAAGTACCAGTGCTAGTTGATCCTATTGATGACAAAATTGATTTTCTTGCAAGATCGATTTGTGTCCATCTAGTGTTGATATTGAGCTTTAATTTAGAAATAATGTGTTTGTTAAGGATAAATACCAACACTAATTGATACTATTGATGACAAAATTGATTTTCTTGCAAGACCAATTTGTGTCCATCTCGTGTTGATATTAAGTTTTAATTTAGGAATAATGTGTTTGTTAATCATAAGTACCAACACTAGTTGATCCCATTGATGACAAAATTGATTTTCTTTCAATATTGGAGTTTGATTATGACTGGGATTTGGGCGTTTGTGTGTTGAGGCTGTGGGTCTGGGCATTTGTGTGCTGATGCAGATGCTCAAAATCAAAAGAAGGGAGAGTTGCCTTTTGTTCTTTGTCATTTTGATTTTCCCTTTTTGCTTTGTCTGGTTATAGCTAATCTGTATATAGGGGAAAACATCAAGCTTTGAGGGATGGTGCTATGAATCTACTTATTTTTTAATGTAAATAATTTGAAGGTGGTGCAAGTGGATGTTGTTTCTTTTCGAAGACAAGGTTTTATGTCATTTAGCTTTATCCATGTTCATCTAGTTTATTCTCGATCATGCCTTTGGTCTAGCCTTTAGCTTAGAAGGATTTGAAGAGAATATAGGATTGTGGATAATCCTATTCCTTCTTCTTTTTTATTGTACTTTTTTCCTTCTTTTCCTTTGTTCTTCACTTCAAAGTCAAGTTGCATCTTGTCCATTTGGACACTACAACCTTGGTTAATTGAAATAATTTAGTACTCCCTCTATTTATTTGATGCGTCATAATTTTTAGGCACTTTTAAAGAAGAATGCTATTCATATGTATTTATAGAACAGATTTATCTGCTTATGTATCCAGTTTGTCACTTGATTATTTCTACTCTGCTTGTTCTCATTCACTTGTTTCCACCTTTCTAATGTTTAGATCAATGGGAAATACTTTTATTTTTTCTAGAATAAAAATAGGAAGATTGCTACTTTGTTTAAAAGAAAGAGGAAGAGTCATTCCAGAGATGAACCTGACTTATTGATGATGAATTTAAACCATAAGAATTGGAAATAAAATATGCTTTTCGTGTCGATTCCACCCATCTATTGGTACCATTTGGATTATTTACGCTGATACCCTATGCCTAAAAGTCTGACGGCCTGAGTTGCTGGACAATGGGTTTACCATTCAGCATTTTCTGGTTTTATAGTTTACACTCCTTATTCGACTTGAGGTTCAAGAACCGAGGAGAATGAGGAAAAATTCAAAGAAGAAAGAGATAGTGACTAATGTTTTACTCTCTCCGTTTAAAAAAGAATGACCTCCTTTCCTTTTTAGTCTATTCAAAAAGAATGATCTCTTTCTTTTTTTGGTAACATTTTAACTTTAGTTTTCCACGTGACATGTTTAACGCCACAAGATTAAAGAGCAATTTTGTACATTTGGGATAACTTTAATTTAGGACCACAAGATTCAAGAGTTTCTTTATTCACTTAAACTCCGTGTCAAGTCAAACTAGGTCATTCTTTGTGAAGGAAGGAGTGATAAAATATGCTATTGTATCTTCGTTGTTTTCTGTTTGTAGTAGTCCTTGTCGTAATATTAACATTTTAGTAGTTTCTTCTTTTCAATTTAGGATGATTAAAATCAAAGATAGCTAGCATAGTTATCATTTTTTTGTCATGATATTATCATTTCCTTAGTTTCTGCTTTTCATTCATTGCCTCCAATGTCTATTCGTGACAATAGTTAAAATTGGTTGCACTAATGCCCATCTTGAAGTGAATTCCCTTTAATTATTATCCTTTTGGTTCTCTTCAAAACATGGAGAGGAGTATTGTTCTTTGTGCTTTTTATTGGTTTCTTCTAGTTGTAGTTTTCTTAATTTCTATCTTAACTGATTTTAGACAGATGGAAACTGCAATGCTAAGCCAGGAGATGCTGATTTATGTAGCAGCAGTTAATATCACATAACTTTGTTATAGATCTTAATCATTTAGATCTATTTAGACCTATAAGTGATTGTATAATAAAAAGGACGCATAATGTTGAAGATCTAAATGAATTTTATTGGAGAGAGAAGGAACATTAGATATGAATATGTATCATTTAGATCTTAAATATTATGTGTGTTTTCTAATGCTCCTATCTAATGTTCCTTCTCTCTCCTGGGAACAGTGGGTGATTATTGGAGTTTTTCAAGTTTCCACTCACAAAACGTGAATTTTGTTCTCATGTAACTATCACTTTTTATCTTAACTTCAAGTATTTCTTTCCTTTTTTCCTTTCAAATCTCAACCAATTTATGTTCAAATGCCTGTTTAAAATGGTTTGTTTGTTTGTGTGTGTGGGTTGGGGTTGGGGGGGTGGGGAGTTTACCACAATTCATCCATATTCTTCGCAGAAGTCTAAATGCAGCTATCAAAATTTTCTAACAGTGATTTAGCTTCAGCCGGAAATTGATCTTCAATGTCAGGAGAAGTTCAGATGAGTTCAGAAAAGCAACCACGAAGAGGACTGTCATGCACCCGTTACTTCGATGCACTCTGGTTCTGCTACTGTAAGTTGAATTTCTTTAGCTTTATTCATTTGTTGACTGTAATTTTGATAAGGATTTATATGCTCTAAACCATCAAATCTCCTGATCATTAAGACCCTCTTAAAGATGCCTAAAGTTTGATGGTTTTTTGTATGTGGAATCTTGCATCTTCTTCTTAGCGTTGAAACTGAAAATGTGTGTCGGCCTAAAAAATGAATGCAGTTAATTTTTACTTCTTCTTACTTCTATAGCTACTTCAGATTGAGTTTCTTTCTTTACCGAAAATAAGTGCAGACGTCATTAACGTTCGTAAAGCACTGTACAGGCTAGTTATTTCAATTGGGTTCTTTCTTGTGATAAGGGTTGAATCTGACTTTTTTTTGTGTGTACTTAATGATGTTCTCTTATGCTATGCATCTTTATTTTGTGTAACCTGATTTGTATACTCTGACATGTTATATTTGCCAGTATACCTAATCAAATCATCATTTTTTTCTCTTCATAGTCTAACTACGTTTAGGGTGCAGGGCTTTATGCTTTAGGTATCAAAATTCATGTAATCACTATTTAGTAATAGCAACCAAATGGCACGTTTGGAGAACGTAATCGTTAGGCATCAGTGTTATGCTTTTGGTATTTACTGTAGTCTGTATGTGAGGATTCAATTTGTCTTGAACATTGTTTCGAGATACCAATATCCAGTAATCCTTGTTTAGAAATACAATTGTCAGCTGACATATTTCTAATTTGTCACTACAAGAAACTAATTACTGTGTGAATTATATATAGACATATTGGTTATTGTGTGGATGATAGGCAGATCTTGCCAGTCCACCAGGTCATATGAAGCTTGTTGCATCATGGCTCTCAAGAATGACAGTACCAATAACATTCTCCTACTTGATCAAAAACCCACAGGAGAAGGGTTAGACTCCTATCTATAGTATGAGTAATTAAAGCAAGTGAACAATTTGAAATCCGAGTTATATTTTGTGCAAGAGGTCTTTGCTAGTTGTTGATTTTGAAAGAGAAAAAGATCTTCAGTTTCTGTAAATCACAGAAGGTTGAACGAGACTCTTTCTAAAGTATGAGTTTGAAGGAGGATCACCCTTTTTATTGTTGGAATGGAACTGGTGCCCTATCCCAGCTCAATAACGGAATTTATTTTCTACTCTGCTAAGCTGAAGTCTATGGCACAGGATAGCACTTGGACCAGCCTTTCAGATGTAGTAATATGGTTCTTGAGGTGTGTCTGTGCGCATGCCAAAATTGTGAAAGCAATAGGCTACAGGTTGCAATGAGCCAAAGGCTATTAAATCTAGTGCTGCAACTGACATTGAGTTTTTTTGATAGGGATAAAGAAAAGAAAGGCGAAACTCATATCATTCAACCAGGAAGTACTTTCTGGCTGGTACATTTAAGGCAGATTCTAGATATTGCATCACAATCATTTCTTTTTGCAGATTGAATGGAGTTTCACTTTAGAACCTATGAATTTATTGTGCAACAAGTAGGTTTTCTACTTTGGAACCTTTAGGGATCGTTTGGTTGGGAACAAGTTATCTGAGATAATTTATCCCACCATGTATATGGGATAACTTATCCCATCACTATGATATAAATGGTGGGATAACTTATCCCATCACTATGATATAAATGGTGGGATAAGTTATCTCAAAATGGCAACCATACAAGATATAAAATTTTTATCCTATCACTATTTATTTTTATCACTCTCACCAAACGACCCCTTAGAGTGCAACAATCAACCTGATCTTGTGCCACATCAGAACAAGAAATATCCGACTTTTTTATCCAATGAAACCCCGAATTGATTGGTTGGAGTTGTGATTCATAGTAACCCACTTAGAGCCCTTTTGGCTTAACTTAAAAAAAGTAGCTTTTTGAAAGTAGTTTTTAATAAGTCGAACTTTAGTAACTTTTAAGTTGAAAAATGAAAAGTAGGGGAGCTACTTTTAACTTTTAACTTTTTTAAAGTCATTTAAAACTTATATTAAGTTATTTTTAACTTTGCCAAACATATCAAAAAGCTAAATATGACTTAAAAGTAGTGACCAACTTTTAAGCCAATCCAAACAGGCTGTAAATTTTGTTAGAAAGATGGGAAATTAACCTGAATCAAAGGCTTTCCAACAAAAAGCTCACTTGTAATAAACTTGAAGTCAATATCTAATACACTATGTAATCGATTCATATATTTGACGATGGAAGGAGAAAGAGAGGATGGACAGATGACCAAACAATAGCAGAATTTCACTTGATCATCCTTTCAGTTGAAAACATTATTGATTCCCTTTTTTTGGCACCTTGCGATGAATAGTTGGAAAATTACTGTTTGTAAACATATGATTGCCTTAAACGACGATTTCGTAATTGATTAAACAAATGGTAGACGCAGGAGGCTAGTGAATTGCTTATGAAAATATGTTAGTAGTCTTGATACTAACAAATGTGAGACTGGTGTTGGGGTTGTCAGCCGAAAGCTTTGCAAGCATAGATTCTTCAAGGATCTAGACTGCTGTTTAGCTATGCTGGGGTCTTCAAAAGACAAGTGTTGCACTGATCCTTGCCTTTAGTAATCTTAGTTAATCCGCTGCAACTGAGGGGAACTATTAAACACAATAGGGTTATACTGTACTATTAACTTGCTGTATCTTAAGTGATGTGAGTCTTGCTCTTGATTTTTGATGACACTTACGATATAGTTTGCTGCTAGTTTCACTCCTAAAAACTTCTTTTCTATTTGTTCTTTCTCCGTCCTTGTTTAGGATTGAAATTCACGGAAGCTGATTATTTATTTGAGCGACATGCATTTAGACGTTTTCAATAACAAAATGATTCATTTACATGCTGAGAAGGAAACACAATTCTAAACTGAAAAAGAAGGCTCATCACCATACATTCTGTTATATTGCTGTTGTTAATAAATAAGTTTTGGTTGCAATGTCTGTAAGAATATATGAACCAAGTTCAAAGTTAATATCAGTGCGACTTATATGATATCTGTTTGTCTTCTGTTATTACATGCACTTTCTTCTTTGAGAATTAGTTTAGGCTGATGTGTAATTATGTTGTGGCAGCTCCCGTCCATCAGATGCAGCAATATTATAGACTTGGTGCCCTTGATAATTGTAGTAAGAAATGGAGTGGTCTCGTTGATTGTCTGACTTTAAAAACCAAAAGGTCTTCTGAAGTGGAGGTACAGTGTTCTCTTGCATCATTGTCTGGACTGTTCACAATGTTCTTTTTTCGCCTGAGTCATTCAACGCAAGGTTTATTCAATTGCTAGAATGTCGAAACAATAAAATTATTTGTGAGGATGAGGAATATAATTTTATTGTTTCGACATTCTAGCAATTGAATCTGAGTCTCTCCAAATTATAACTCTTTGATTAGAATAATTGTTGCTATAATATCAGAAAAGGAGGTATACTAACACAAAACTTCTCAACTGGGGGAGGTCTTGGATGCAAGTTTTGCTGATGTGCAGCTTTGCTTTTTTGCTTTTTATGTTGTCGAAAACACTTCTAATTTGTTGATAGTCCCATTTAACTGCTCAAATCCTGGGGATTGAAGTAAAGGAGGTATTTTAAATGAGATTAAACTAGAGGGTACATTTTAGGTATTTCACAAACTAGGAGAAGATTCATTTAATTTTGCCAAACCCGAGGTAATGCCTCACCTAGTCACCCCTCACCTACAATTGGTGTGCCTCAACCCATCCAAATTTTTGAGTATGGCTGATAAATTGGTTGTGATTTCATTTGTCAACCACAGTCTTGTGTTGCTGACTTAGGCAGTAATGCTATGGTATTTGCTTTTAATGAGGTTGCTGAGCTAGCAATTTCTCTTTTCGGATGGATGCTTCTCTGAAGATGTTATTATAGATGCAGAGGGTTTTTTTAAAAATCAATAAATACAAAATTTATCATGTGGGAATTTTGTTAGAGCTTTAAGTTGTATACACCGTCAGTGCATGCAATTTTTTACACATTAGGTCATTTAATGGATATTTATAGGTAAGCCTCCTTTAGTTGTGGGACTTGAAATTTTAATAATGAGATATATTACCTGAATACCTGCTATAACAAGTAAAGATGATCTGGTAACAAGTAAAGATGATCTGATAGTGTAAAAAATACTCACACTGACGGTGTTCTTCCCTATATATGCTCGTGAAGTCACTTCTGCTTTCTGTATTATTTTGTTGATTTTGTTTATCATACTCATCATTAGATCATGTGAAGCAGGAAATTTTAGAAACACGCGAGAAAGCGAAGCCTCACCTGTGGTCAACACGAACCCCTGAAGAAGCCGCAGCTTATTGGAGCGAACTCTTTGACCATCTAGATGAAGAGTAAAACTCTTAAGACCTTTTCATCAGACATTTGCTCAATCAATACGAGAAAGTTTATTATATCATTTGAAATAATCTTCTCCCCAATGATGCTTGTTTCAAACATGTCTTAGAGGCACCATGGTTATCAAAGTGGGTTTCTAAAGAGGCACCAGTTTAGGAATGTTTAGAATAGGAACATTGTGTAGGAAAATCTTCTTTTTCCTTGAGTGATTGAAGCAGCATAAACAAATTCCAACAATCTTAAACGTCAGAGTAACACCACCTTCTGATTCAGATGAACTGTGGAGCTTATCATTGCATTATAAAGAGATGGAACAAAACACTA</genome_strand>
        <mrna_strand>TCTCACGCCCACCCAACCCCGATCCACCCCTGATCGGCGCCCATCCCACCCATTCCGACCGGCGCTGCATAGATCAGCAGCAGCAGGAGGTCGCGCCACCTTCCCCGACCGGAGCTCCGTGCGCCTCGATCAGCAGCAGCAGCAGCAGGAGGAGGAGGTCGCAGCATCACCGCAGAGGCGGCAGCAGCAACAGCAAATTCCGGCAGATTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTAGCTTCAGCCGGAAATTGATCTTCAATGTCAGGAGAAGTTCAGATGAGTTCAGAAAAGCAACCACGAAGAGGACTGTCATGCACCCGTTACTTCGATGCACTCTGGTTCTGCTACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTTTAGAAACACGCGAGAAAGCGAAGCCTCACCTGTGGTCAACACGAACCCCTGAAGAAGCCGCAGCTTATTGGAGCGAACTCTTTGACCATCTAGATGAAGAGTAAAACTCTTAAGACCTTTTCATCAGACATTTGCTCAATCAATACGAGAAAGTTTATTATATCATTTGAAATAATCTTCTCCCCAATGATGCTTGTTTCAAACATGTCTTAGAGGCACCATGGTTATCAAAGTGGGTTTCTAAAGAGGCACCAGTTTAGGAATGTTTAGAATAGGAACATTGTGTAGGAAAATCTTCTTTTTCCTTGAGTGATTGAAGCAGCATAAACAAATTCCAACAATCTTAAACGTCAGAGTAACACCACCTTCTGATTCAGATGAACTGTGGAGCTTATCATTGCATTATAAAGAGATGGAACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326535" ref_strand="+" ref_description="SGN-U326535        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT5G47960.1 | Symbol: None | Ras-related GTP-binding family protein, contains Pfam profile: PF00071 Ras family | chr5:19438610-19439759 REVERSE | Aliases: K16F13.4, K16F13_4 (evalue: 3e-92, score=335) genbank/nr: gi|50251643|dbj|BAD29646.1| putative ras-related GTP-binding protein [Oryza sativa (japonica cultivar-group)] (evalue: 1e-91, score=340)">
      <seq>gttccttccctccaacctgacaaccaacaaatacccgaatctcttatgtaacacttttttcaacaattgattgatcatttgctcagtcaaaatcaatataaatcctttccattatcttccccattaaaccctaaccctatactccgattgttctctgaacgggaaaaagatcaacccaagtttatgaattaagcactacgaagttcgagaacccgatctttcttcaatttgatcgatcgggttatagttttttttttttgtttacaaagatgtcgaaattgtatggaggggatttcaatcagaaaatagattatgtgttcaaggcggtgctgatcggagattctgcagttggaaaatcgcagttattggcaagattttcgaggaatgagtttagtcttgattcaaaggcgaccatcggtgttgagttccagacgaggacgttagaaatcgataataagactattaaggctcagatttgggatactgctggtcaggagagatatagggcagtgacaagtgcgtactaccgaggtgctgttggagcaatgctagtctatgacattaccaaacgtcaatcttttgatcatatcgccaggtggttggaggaactgcggggccatgctgataaaaacattgtcatcatgcttgtaggcaacaagactgacttgggtagtcttcgtgctgtacctactgaggatgcgaaagagtttgctgagaaagagaacttgttctttattgaaacatcggccctagaatcaacaaatgtggatacagcttttgttaatgtcttgacggagatatatagggttgtcagcaagaaatcccttgttgccaatgaggcagaatccgccgctgggagttcagctctcctcaggggaaaggaaattgttgttcctggccaaggacctgtaccaagtgggagctcatacagctgttgcagatcatagtaggagtcaatcgaagtggttctcaaagttgtataggtttttacatgtatcagatttcaatgctatgcacgtctatcaaatgcaaatctgagtgctactacaactacatgatgctacattggtattcatccactttcctctccctaatttgcgctttcgtcatttgtgtaaaaaagaatcacagttcaaaaccattaaatttcaatcttggtcttatgctaaatgtgcacttgaccgtcccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="22128" stop="27402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22428" g_stop="22926" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22927" i_stop="26406" i_length="3480">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26407" g_stop="27102" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="1195" r_length="696" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-U326535" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1195</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22428" e_stop="22926"/>
          <exon e_start="26407" e_stop="27102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCTTCCCTCCAACCTGACAACCAACAAATACCCGAATCTCTTATGTAACACTTTTTTCAACAATTGATTGATCATTTGCTCAGTCAAAATCAATATAAATCCTTTCCATTATCTTCCCCATTAAACCCTAACCCTATACTCCGATTGTTCTCTGAACGGGAAAAAGATCAACCCAAGTTTATGAATTAAGCACTACGAAGTTCGAGAACCCGATCTTTCTTCAATTTGATCGATCGGGTTATAGTTTTTTTTTTTTGTTTACAAAGATGTCGAAATTGTATGGAGGGGATTTCAATCAGAAAATAGATTATGTGTTCAAGGCGGTGCTGATCGGAGATTCTGCAGTTGGAAAATCGCAGTTATTGGCAAGATTTTCGAGGAATGAGTTTAGTCTTGATTCAAAGGCGACCATCGGTGTTGAGTTCCAGACGAGGACGTTAGAAATCGATAATAAGACTATTAAGGCTCAGATTTGGGATACTGCTGGTCAGGAGAGGTAGTTTGAACTTCTTCTTCTTTAGCCCTTTCTCTGACTTTTTTTTTTTGTTTTTCGAGATTTATTTATAGTGATCATGATCCAGTGATATGTGTAAGATCTGTTGATATCTCATGGTGATTGTGATTTGGTCCAAGTTGTGGAGTTCGCTTGGTGTATTATGTGTTTGGTAAATATGGCGATGCAGTTTTTTGGCTGATATGTGCTTTTGATCATATGGATATCTGATTTGCTATACAATATCTAACATGCTTTAGTAAGAGATTTTTAAAGGTGATCACTTATTATCACTATGAGAAAGAGAGTATTTCTATATGTGATGGATCTTAATTGCGTTTTGTGGATCTGATCACAACTTATTCAATAGTCTCTTACTGGGCGTTGTTGTTGACCAACCAAATGGTGATCACAACTTACTCAATAGTTTATAGGATTGAGGTTGGTAGGTGGTAGCTGCCATTAACAGTAGTATGTAATAGTTTTCCGTGTTTCTTAAGACTGCCCTTATATGTATTAATTGTAAACAATGGAGTTGGATTACCTTTTAGCATTCATCATATTTGAAATGTGAGTGAATGAATGTTTCATCACCTTTGTTCCTCAGAAGTGGTAATGTATGCCCTTTTTGAAAAAAAAAAGCTGAAAATTTTGAAATGTTAGGACTTAATTGTAGAGTTTATACAATTCGACTAGATGAGCCTTAACCTCAAGATCTTTAGTTTGAATAAGCACAAGTTGTCTAGGGAGTCACTGTATGAAATGCAAAAGGGCCAGGTAATTTGGAGATTTAAAGAAGTAGGGTGAGTATGGGCATCTTAAATTAGTAGAGAGTCAAGAAATCTAAATGGAGACTTTTGTTTTGCCTGCCTCAAGCCTTGGGGATTGGGATACCCGATTTTGTCCCATTTGCGTCTCTTATACATTGGGCAATAAAGTGCACCTTAGGCAAGCCTTTGACGACAATGTTTTCTAGTTAACATTAACCTGCAAGCAAAATGTGACTAGGTAAACAAAATTCATTTCTTTGATGAATCTGTCATGTGGGCTTTTGGGTACTTGGACGGTGATAGATTAGGTCTCTCAACAAGCAACATCCTTTTAGATTGTAAAGGATTGCGCCTGAAAACTTATCTAATGGTTGGCCTCATATTCACCTATTGATTGTTTATCTTTTTCTTACTCATGTTTCATCACCCATAGTCTGAATTACCTTCCAAGTTCCTTTTTCTTTTGATAAAGTAAGCATTTTTCCTATAGTAAGTAAATAATTTCATTGAATAAACTGCACCAAACTGGTGCTTCTTTATACAGCTAATACACACAATGCCTTTAAATTTGTCAAATGTAGGGTACATGAGAGAATCTAGTAAATTTTTCATGTTATGCACATTTCTCAATTTACATCATAATGCCTAAAAGTGCCAAAGGTTCCATTTCCCTGCTCTTTTCATCCTCCTTTTCCTGTTGAATACCCGACTTAGTAATGAATCTCTAACAATTGTTGGCGTTACTTATTCAATACTAAAAAAATTTCAAATTGTGCTACACAACAGTGCACAACCTGAAAGTGAAGTAATAAGTGATTCACATTGTTCCACAGCTTCTTTTCTATTTTGATAACCGAGAGATCTCAAGGGTCAGTGGCACACGGTTCGAACCTCGGTGGCAGACTTTCCGACCTCTTACTGATGAAAACACCAAACAGGACATCAAAATATGCAAATTTTACTTTACATTTGACATTGTTTAAAAGGAAAAATGATTTTTATTATTTATTACTCGAGACTTTTATTAAGTTTCAAGTGAATTAAATGTTTTGCCTTTTGTATGAGATTTTGGTGAAATTTCTTGAAAGAAATGAGTTTGAAGAGGTAATGGGAAAAAACCAAGGTGAAGAAGGAAAAAGGGACAACATTCTGTTGATTTCCTTTTTGAATCAATAGGGGGGGAGGTTTGGTAAATAAAATACACCGATGAGGATATTTTTGTCTCGAAAAAATAGTTTTCTGCTTCTTGGAAGAAGCTACAATTTATAGCTTCTTCCCAAACTGTTTCTGCTACTGCCCAAAATCATTTTTTCTGTTTTGGCCAACACCTCAATTCTCCTAAAAGAAAAAAGGTTATTTTTTAGCTTCCCAAAAGTAGAAATAGGCTATGTATTTTATTTTTCTTTAGACTTGTTCATTTTGTATTTTGTAAAGTTCTTACCATTTCCTTTGCTTATTCTTTTCTGCGTTTTCTGCCCTGGTTTTTGTTTAGACTTTAGAAATTTCTTTAAAAGATAGCTGTTAGTGGATTTTTTTCCCAACCACAGAATGGGCAGGTGCTTGAGCTACCAAAAACTTTTCACAAACTCCCAGGGAACTCCTTTCCCTGATTTTTATAAGCTTACATTTGGAAGTCTGGTTCATGTATCTAAAAAGAAACCACTATAAGTCAGGTAGGTGGACTGTAGCCAAATAGAATCCATTGCCGGCGATGAATGATTACTCTGTATTAAATAAATAACTCAGACTTAGTTCTGCCTTGATTATGGAGAGAATGGTAGTTGCTTCTTTTATTTCCTTGTTTGATTTCAGGAGTGTTGGACTGCGGATATAATTATCAGTACTCTATGTCACCTCGAAGGTAGAATGTATTGTGCATCATTTTATGTGCCTTGGGGAGGGACTGTGAATACATGGCATCTGTTGTAGACTGTCTAACAACAACTATTCTTTTGTTTTTTTGGATTAGTAAAGCCAATGAAATATTATCATGAGCAATTATGAGGAAGTTATCATCTCCACGAGACTAATTACATGCAATGAACACCATAATGCTTAAGAAGTTTAGTCTTGTGTGAAGGTTTATATTTACATGTGGGAAATGAGTACCCTCCCAAGAAATAAAAGAAAGTAAATCGAATTTAAATATGCAGATGAAGATACAAAAGTTCAATGTAATTTCAATCTAATTTGAATCATGAAAACAGAGAGCTGAACTGAATGTTTTTAATAGTTGTTGTTGCTGCACTTATTTAATCTGAATTATGACATTCCTTGTTGCGTTTTTTTCCTTTTCTGGTATATGGCCCCTCTCACGAAGGTAGAAAGAGTTGCAAAAGAAAGAACAGTGTTTTCCTCTAAAAGATAGTTGAAAAGTTTGACCTAGTCCTAATTATTGATCCAGTGTGGAACACCCTAAGCTGGTCTACTCATATTAGCTTAAGTAATTTCATTAGCCTAAATCAGATGGAGAATCAAATAAATGTGCTTTATCATGCATAATTATGCTTGTCTATTATCATGCAGATATATTGTTCTAAATGTGCCAAACCATTCTGGATGTCTTAGTTGTTTTGGTTAAATACGGCTATATGTGGCATTACCATCATCATATGTGATTATACTTGTGCTTGCTCAAAAAATGTCTCTTTCGTTCCTGTGATGCTCCCTGTGGCCTTTTGGGACTAAAAACTTGTATATGGTGTGGCTCCAGATATAGGGCAGTGACAAGTGCGTACTACCGAGGTGCTGTTGGAGCAATGCTAGTCTATGACATTACCAAACGTCAATCTTTTGATCATATCGCCAGGTGGTTGGAGGAACTGCGGGGCCATGCTGATAAAAACATTGTCATCATGCTTGTAGGCAACAAGACTGACTTGGGTAGTCTTCGTGCTGTACCTACTGAGGATGCGAAAGAGTTTGCTGAGAAAGAGAACTTGTTCTTTATTGAAACATCGGCCCTAGAATCAACAAATGTGGATACAGCTTTTGTTAATGTCTTGACGGAGATATATAGGGTTGTCAGCAAGAAATCCCTTGTTGCCAATGAGGCAGAATCCGCCGCTGGGAGTTCAGCTCTCCTCAGGGGAAAGGAAATTGTTGTTCCTGGCCAAGGACCTGTACCAAGTGGGAGCTCATACAGCTGTTGCAGATCATAGTAGGAGTCAATCGAAGTGGTTCTCAAAGTTGTATAGGTTTTTACATGTATCAGATTTCAATGCTATGCACGTCTATCAAATGCAAATCTGAGTGCTACTACAACTACATGATGCTACATTGGTATTCATCCACTTTCCTCTCTCTAATTTGCGCTTTCGTCATTTGTGTAAAAAAGAATCACAGTTCAAAACCATTAAATTTCAATCTTGGTCTTATGCTAAATGTGCACTTGACCGTCCCAAAAAGA</genome_strand>
        <mrna_strand>GTTCCTTCCCTCCAACCTGACAACCAACAAATACCCGAATCTCTTATGTAACACTTTTTTCAACAATTGATTGATCATTTGCTCAGTCAAAATCAATATAAATCCTTTCCATTATCTTCCCCATTAAACCCTAACCCTATACTCCGATTGTTCTCTGAACGGGAAAAAGATCAACCCAAGTTTATGAATTAAGCACTACGAAGTTCGAGAACCCGATCTTTCTTCAATTTGATCGATCGGGTTATAGTTTTTTTTTTTTGTTTACAAAGATGTCGAAATTGTATGGAGGGGATTTCAATCAGAAAATAGATTATGTGTTCAAGGCGGTGCTGATCGGAGATTCTGCAGTTGGAAAATCGCAGTTATTGGCAAGATTTTCGAGGAATGAGTTTAGTCTTGATTCAAAGGCGACCATCGGTGTTGAGTTCCAGACGAGGACGTTAGAAATCGATAATAAGACTATTAAGGCTCAGATTTGGGATACTGCTGGTCAGGAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAGGGCAGTGACAAGTGCGTACTACCGAGGTGCTGTTGGAGCAATGCTAGTCTATGACATTACCAAACGTCAATCTTTTGATCATATCGCCAGGTGGTTGGAGGAACTGCGGGGCCATGCTGATAAAAACATTGTCATCATGCTTGTAGGCAACAAGACTGACTTGGGTAGTCTTCGTGCTGTACCTACTGAGGATGCGAAAGAGTTTGCTGAGAAAGAGAACTTGTTCTTTATTGAAACATCGGCCCTAGAATCAACAAATGTGGATACAGCTTTTGTTAATGTCTTGACGGAGATATATAGGGTTGTCAGCAAGAAATCCCTTGTTGCCAATGAGGCAGAATCCGCCGCTGGGAGTTCAGCTCTCCTCAGGGGAAAGGAAATTGTTGTTCCTGGCCAAGGACCTGTACCAAGTGGGAGCTCATACAGCTGTTGCAGATCATAGTAGGAGTCAATCGAAGTGGTTCTCAAAGTTGTATAGGTTTTTACATGTATCAGATTTCAATGCTATGCACGTCTATCAAATGCAAATCTGAGTGCTACTACAACTACATGATGCTACATTGGTATTCATCCACTTTCCTCTCCCTAATTTGCGCTTTCGTCATTTGTGTAAAAAAGAATCACAGTTCAAAACCATTAAATTTCAATCTTGGTCTTATGCTAAATGTGCACTTGACCGTCCCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319206" ref_strand="+" ref_description="SGN-U319206        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: | Symbol: None | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein, similar to cysteine-rich 5B protein - Lycopersicon esculentum, PIR2:S39552 (GI:415833); contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 | chr3:2383616-2383936 REVERSE | Aliases: F21O3.16(evalue: 3e-24, score=108) genbank/nr: 5B(evalue: 2e-47, score=191)">
      <seq>aaaaaaaaaaaaactatagtatcaattcaaaaaatatttttaaaaaataaaatgactagtcgtactttagtaatgctgatattagtaataacgtacaatagtattgcggtgaaaggaagcaacggtcatccctgtagcagcacattcttttcagcgttgattcagctgataccttgtagggcatcggtggttccgttcagttcggtaccaccgagcgaagcgtgctgcgcttcgatcaaggctttagggcagccatgtctctgtgttcttatcaatggccctcctatttctggtgttgatcgaaacatggccgtacagcttcctgagaagtgcactgccaactttgaacaatgtgaatttggaaagtaggagatactagattgattctagtaggcgtggtgaaggagaagtctatagatcaataaattgtgcaggggagcttagcaactctgcacaattagaaatatttactaaatcaaattaagtgttcacttaattgttataataatttatttagcttgccttaatatcattgttatagtaataatggccaacattaatattatgtaatgcaaaatggtcgcttcgaaatggtaattaaacattagtgataagaacttagtgaatatttatcattttgatgtcattacattagttcaaatttatgcgattatcaatctttacaaaaaaaaaaaaattatgaatcgatatatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33152" stop="31109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32850" g_stop="32509" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="352" r_length="342" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32508" i_stop="31782" i_length="727">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31781" g_stop="31407" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="726" r_length="374" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-U319206" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32850" e_stop="32509"/>
          <exon e_start="31781" e_stop="31407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTATAGTATCAATTCAAAAAATATTTTTAAAAAATAAAATGACTAGTCGTACTTTAGTAATGCTGATATTAGTAATAACGTACAATAGTATTGCGGTGAAAGGAAGCAACGGTCATCCCTGTAGCAGCACATTCTTTTCAGCGTTGATTCAGCTGATACCTTGTAGGGCATCGGTGGTTCCGTTCAGTTCGGTACCACCGAGCGAAGCGTGCTGCGCTTCGATCAAGGCTTTAGGGCAGCCATGTCTCTGTGTTCTTATCAATGGCCCTCCTATTTCTGGTGTTGATCGAAACATGGCCGTACAGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAATGTAAAAATCTATCCACCTCTCTTTTATCGAACGTTTTCTGCAAAATGTTTTTCGACCAAATGTTATTTCGAAGAAAAAATGACTAGTATAAGAATTAAATAGAAATAATAGTGCAATTTTGAGCTATCGAGAAATTTTTGAATATCTAGTTTGTAAAAATGAATAAGTATCCTTTAGACTATGATCGAAATATCAAAGACACAATTTAACTAAACTAAGGTCCTATTATCCCTGAACTTATTTTTTTTGGTAATTTTGCGCATCTTTTTAGCTTACGATGCACCAAATATCTCCCACGCGCCTCAATTGCGTGGAGTCACAGAGTGTGCCACGTAAGACAAAACATGCAAAAATTTACCAAAAAAAATTAAGTTCATGGATTAATAGGACCTTAATTTAGTTAAAGTGTATCTCTGAAATTTCGATTATAATCTAAGGGGTACTTGTGCATTTATCCTATTTAGTTTTGACGATAGTTAATGAATGTCTATTTTGAGCAATTTTAAAAGTTTGTAAAAGAAAATGATTTGTGTTTGTGAAGGAAGTTATATTTGCCGTTTTTGTTAGGAAGAATCTTAGATGTACAATTATTGACTATCAGAACTTTTACTTTAATAGTGAGGGTTCGATTCTATGCCTTGTAATCTTCCTTTCGTTTCTCCTTCTCACGCTTCCAAATTATTTTTATTTTTATTAGAAAGTTATCTGTTGTTTTTCTCTTTTTCAGGTGAATTTGGAAAGTAGGAGATACTAGATTGATTCTAGTAGGCGTGGTGAAGGAGAAGTCTATAGATCAATAAATTGTGCAGGGGAGCTTAGCAACTCTGCACAATTAGAAATATTTACTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTTGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATGTAATGCAAAATGGTCGCTTCGAAATGGTAATTAAACATTAGTGATAAGAACTTAGTGAATATTTATCATTTTGATGTCATTACATTAGTTCAAATTTATGCGATTATCAATCTTTACAAAAAAAAAAAAAATTATGAATCGATATATCTATGATATAATT</genome_strand>
        <mrna_strand>AAACTATAGTATCAATTCAAAAAATATTTTTAAAAAATAAAATGACTAGTCGTACTTTAGTAATGCTGATATTAGTAATAACGTACAATAGTATTGCGGTGAAAGGAAGCAACGGTCATCCCTGTAGCAGCACATTCTTTTCAGCGTTGATTCAGCTGATACCTTGTAGGGCATCGGTGGTTCCGTTCAGTTCGGTACCACCGAGCGAAGCGTGCTGCGCTTCGATCAAGGCTTTAGGGCAGCCATGTCTCTGTGTTCTTATCAATGGCCCTCCTATTTCTGGTGTTGATCGAAACATGGCCGTACAGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTTGGAAAGTAGGAGATACTAGATTGATTCTAGTAGGCGTGGTGAAGGAGAAGTCTATAGATCAATAAATTGTGCAGGGGAGCTTAGCAACTCTGCACAATTAGAAATATTTACTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTTGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATGTAATGCAAAATGGTCGCTTCGAAATGGTAATTAAACATTAGTGATAAGAACTTAGTGAATATTTATCATTTTGATGTCATTACATTAGTTCAAATTTATGCGATTATCAATCTTTAC-AAAAAAAAAAAAATTATGAATCGATATATCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312996" ref_strand="+" ref_description="SGN-U312996        Tomato 200607 #1 [34 ESTs aligned] arabidopsis/peptide: | Symbol: None | histone H3, identical to histone H3 from Zea mays SP:P05203, Medicago sativa GI:166384, Encephalartos altensteinii SP:P08903, Pisum sativum SP:P02300; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4 | chr3:10130520-10131174 REVERSE | Aliases: K1G2.15(evalue: 3e-56, score=214) genbank/nr: PREDICTED:(evalue: 1e-54, score=215)">
      <seq>gaactcgagttttcatcagtaaaaagcaaaatggcccgtaccaagcagactgctcgcaaatccactggtggaaaggcaccaaggaagcagctagctaccaaggccgcaagaaagtcagctccggctaccggaggagtgaagaagcctcaccgtttcaggccaggaactgtagctttaagggaaatcaggaagtaccagaagtctactgagttgttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgttggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattagggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtaggtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttttaatctaagatcttgcccttacgtcggtactgatgtattccaatgattaacgattgaagcaatacacagtgtttcttgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33552" stop="34822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33852" g_stop="34521" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="671" polyA_stop="690"/>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-U312996" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33852" e_stop="34521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTCGAGTTTTCATCAGTAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTTG</genome_strand>
        <mrna_strand>GAACTCGAGTTTTCATCAGTAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334063" ref_strand="+" ref_description="SGN-U334063        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | histone H3, identical to histone H3 from Zea mays SP:P05203, Medicago sativa GI:166384, Encephalartos altensteinii SP:P08903, Pisum sativum SP:P02300; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4 | chr3:10130520-10131174 REVERSE | Aliases: K1G2.15(evalue: 4e-56, score=214) genbank/nr: PREDICTED:(evalue: 8e-55, score=216)">
      <seq>tgggtacgggcccccctcgagttttttttttttcttatttttttttttttttttttcagaaacactgtgtattgcttcaatcgttaatcattggaatacatcagtaccgacgtaagggcaagatcttagattaaaaagaaaaaggtacaaattttcattaatcagatccagaaactggtaaaccaacagtttacacctacttcaactaaaattatctattaggatttacgccactaaccctagcagacaaaccctaatcagctttaaccgttaaaagtttcttcttaagccctttctccacggatcctcctagcaagctgaatatctttgggcatgatagtgaccctcttggcgtgaattgcacagagattagtatcttcaaagagaccaacgaggtaagcctcagcagcctcttgtagagcagccacagcactgctctgaaacctcagatctgttttgaaatcctgagcgatttccctcactagcctctgaaaaggaagcttcctgatcaacaactcagtagacttctggtacttcctgatttcccttaaagctacagttcctggcctgaaacggtgaggcttcttcactcctccggtagccggagctgactttcttgcggccttggtagctagctgcttccttggtgcctttccaccagtggatttgcgagcagtctgcttggtacgggccattttgctttttactgatgaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="144014" stop="33558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38830" g_stop="38812" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.421"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38811" i_stop="38605" i_length="207">
            <donor d_prob="0.955" d_score="0.00"/>
            <acceptor a_prob="0.209" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38604" g_stop="38573" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="51" r_length="32" r_score="0.750"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38572" i_stop="35627" i_length="2946">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.027" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35626" g_stop="35619" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="59" r_length="8" r_score="0.750"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35618" i_stop="34518" i_length="1101">
            <donor d_prob="0.956" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34517" g_stop="33858" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="719" r_length="660" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-U334063" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38830" e_stop="38812"/>
          <exon e_start="38604" e_stop="38573"/>
          <exon e_start="35626" e_stop="35619"/>
          <exon e_start="34517" e_stop="33858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTCGAAGCCTAAAGGGTATAAAATATTAATAAAATTTTTAAAATGTTATATAAAATTTTATATTAACCAAAACGGTAAAATTACTGGAACAACAGCGATTTACTCCACCGAAAAAAGCAAAATCGATGCTGCTGCAGCGATTTTGAAAAAGAAATTTTAGAAAATCACTGCCCATTTTAATTTTTTTTAAAAAAAAAGAAAATCGCTTTTTTTATTTGGCAGCGATTTACATTTTTCTTAATTTTTTTTGTTTGAAAATTGCTGCCTAGGCAGCGATTTTCTTTAATTTTTATTTCATTTTTAAGAAAAATGATTTTCAATTTTGTTTAAAAAAGAAGTCACATTTTGAAAAGGAAAAAATAATTTAGTTAATTTGTGGAAAAAGAGATAAAAATTTCTAAAAATCGTACAATTCAAAAATGGCAATTACTGAAAAGGTTAATTTTGTAGCACTCCTAGTCCTAAAAGATGTGAAAAATAGATTCCAAAAAAATCTATTAAGCTGAAGTGAACAGAATATTTTTTTTTTCATTACTATTAAAAAAAAAGGCAACTAATTTCATTACCATCATTGAAAAGGTTAATTTTGTAGATAGTTTCTAAAAAAATCCTAATCCTAAAACTTATTGGAAAAGGAAAAAAAAGTTCCCAAAAAAATCTTTTTAAAAAGGGTTTGATGAGTTAAAGTTTTTTATAACAATTTTAACCTTTCAAAATTATTGTTCTTGTTCGAGTGAGTGTGAGAAGAATGGATATTGAAAGAGTTTTCATGAGTTGTTACAAAATCGAGCAGCAACCTGATGATATTTTCAACTTGATCGAATTAGCTCTGCGTGTTGGTGCATTCAAATATCAGCCACAGTTTGAAAAACGCAAAGCCAGGATCATCAAGTTTCTCTTGAATCCCTCAATGACATCAACTGATGATGACGATGAAGAAGAAGAGGAGGAGGAGGTTATGGAGGACAATGTTGGTGATCAAGATAGCATCGAAGAGCCTGAGAAAGAAGAAGATGGGGAGTTAGGAACACAACAAATAACTGCAGAAAGCAACAAACCCTTGGCGAGGAAGATTAGAATAGTCATCCGCAAGTCTGTAAAAGTTGCTCCTGCGGAGAAACACAACAATGGCAGTGCAATAACAGAAAGCAGCACGGAGTTGAAGAAAACTGACTTGGTTCAACAACGGGATAAACCACAGTTCCACCATACTACTACTATGCCATCAAGAAAGAGGATGAACGCGTCCACCAAACGAGTACAAGTTGCTCCTCCTCATGTAAGACTTCTTTCTGATTTATCTTTCGAGAAGCACCTTGACAGAGACAAGCAGAGCCACAAAGGTTTCAAGAAGATGGAGAATGATCATCACACAGAAAAGAAGAGAGAAGGAGGAGCACAAAAGACCCCTTCCCAATGCAGGAGAAAAGAGTGCACTACTGGTTCAACTAAGAGCATGCTGCCGCCATTGATGAAGATGAATGTACAAGTTTCTCCTCCTCTTCATCCAAAACAAAGCAACAGCAGTTCAAGTAAAACACCAGTGCAGAAAACATCACAAAGCTCTGCAGTTGCAAGACCCATTCGAAAAGAAACACAAAGCGACACTGATATGAAGAAGAAATTTGAATCAAGCAAGAGGAAGTTTGAGCAAAGGTTAGCAGATGAAAGGGAAGCCAAGAGACGGATTGTATTGGTAGACTTTCATCAAATGCCTAAAGTTGCTAATGACCCTCCTGCTCCCAAGCGCTGTTGGAATAGGAAAAGGTTTTGAGATTAGTTTTTGTCTTGTAATTTTGGAGAGTATCAGCATTCACTTCATTTTTTGTATGTATGAATGATCTTTTACTATGAAATAGACAAGTCACATTCATAAAAACAGTTCCAAGGACATGATTACTTATGTCCTGGCTCTACATTGTCTCTTGGCTAGTCGAGCCACTTACTTACTTAAACCATCAGGAGCCAACAAACTGATTACACTTTTCTCTACAGAAAATTGATCACCTATTTAAGCAAGAAATAATTACTCTCTAATCTGTAAGACTGTAACTAGTAACTAAACACATCCCCTTTTCATAGTCATACATTCACAAACTCAATCAGCTCCATGTTCAAATTCAATATAGAAATACTTGTTGGAGACAAGTAATCTGAAAGTAGATTGGTTAATCTCAAATTAAAATTGAGAACAAGACTTATTTTGCAAGAAAACAAAACTAAAATTACCTTATGAGGAATAAGTAAATGCAAAGGCTGTACACTTCTAATTCAACATAGCAAGGAGTTTTACTGTCAATGTTGAATTAATAAGAGTGGAGATTCTTAAGAGCACCTTAGCCTCATTTTCCTTTAGTTTGATTGGTTTCCAGATCTGCAGTGAATTAGAATGCTTCCGCTGTTCTCCTTATAGCAGTATTCATGCCTAAATTCTTACTCTATCTCTGGCACAAAAAGTCATCAACCATTGGAATCGAGTGAAACACTGACGTGAGGATGATCTGGTGAGCTTGAAAAAAGATAGTTATCTCAAGGTTAAGTTCAGCATCCCATTCCAACCTAGTGAAGATGCACCAACTCCAGATATCATAGGTATACTGATAATAAAGATATTTCTTATTGTGCCAAACAACTGTTATTGTTCAAGATGTGCTAAAGAAATATTGAATGATTATAAGAATAAACTGAAGTCATAGATGAATAAACAATCTTTTGTTTTGTATTTTAGTTATTTGGCAGCAGTAGTAAAGTAGCAATATCAGAATGGGATTGTAATAAATGAAAGTAAGTTTAAAATTCTGTACCACTACCAGTTGCCCTCTCCACAGCTCATTTTGGCTGAAGCTAAAGTGAAACAGAAAATCCTTTAAGATGGCTACCACTTCAATTGCATCCAAGCTCCACCTGTAATGCTATTGGTAAAAGAATAAACATCAGTCCACCCCCTGCAACTCTTAGTATACACTAACTTAAAACCTATACAGTTGCATTTGGATAACAAACCCAAATCAACTCAGTTTCGGACAACTAATAACGGGAACAAATAGATTGTAACATGGTGATGCCACACACTGAGGATTTTCTAAGCCAATGGTATTTGAGTCTCTGGTCTCACCGCCTGCTAACCTGCCTGAGTTTAAAAGTTCCAATATATATGGAAAGGTACTCAATTTTCAAATCTTGTAAATGCATACATATAGATGTTCAGGTAAGGCGAATTTCGAAGATCTATAGCAAGTATATTACTGTAACACTACTTATCCTGATAGATTAAGTTAACTGGTTCTGTCACTTCTTTTCTTTTGGCATATTATCAATATCATTCAGCATAGTCAAAAAAAATTTAGGTTGCACTCTTTCTATCTCTTCAGAAAATTGATGACCTATATAAGCAACAAACAATTACAAAGGGATTTCTGATCTTAAGACTGTAAGTAGTAACCAACGCACCCCTCTTTATAGTCACAGTGACTGTTACATATTCACAAACTCAATCAGCGGTAAGTTCAAATTCAATTTAGAAAGACTTGCAGAAGACAAGATATCTGAAAGTAGATTAGTTCATCTCAACTTAGAATGAGAGAAGTAATAAACAAGGCTAATTACCTTCTGAGAAGTAAGTAAATGCATAGGCTGAACGTTTCTCATTCAAATATCAAGGATATTTATTGCCAACTTTGTGGTCTAAATTTGTCACCCCTGTGGTCGCTGGAGATGAAATCTGGATAAAAAAATACCTCAGTCTTAGTTTAAATGTAACATCTGCAGCATCATGTTTCACGAAATTAGAATCAAACACAAACTTCTTCAAAACAGCTGCCACTTCAACCTCATAACTTTAGAAAGTAAACTCAACATGCATACAGGGCAACAAATAAATTTAACAAATGAAACTTTGTGCAGAAGAGGAACATTTATGAAAACCGTACACTCTACACTACCAAAAGGCGAAATCAATAAAGAAGGAAATGTAAAATATAATCCAGACCATAGCATGCGATGCAGCTTTAATTGAAACAAACTGAACTACAAATTTCATTAATCAGATTTCAGAATAGTACTAAACTAGAAGTTGAAAATGTAGAACATGAGTTCTGAGTAAATGTAGAACTGAGGTTCCATATCCAGCATATACAAGTTATTATGCAGAACAAGAAATGCAAAATGGTTGTAATGAATTGTCATAACAAAAAGATAATTTGCCGAAAGCTCAAAGCCATATATGAGACTATTGCAGTTACTATATTGGTGTGCAGTTGTAAATTAATAGATCTATTTAAATCAAAATTTTAAGAAAACTCGAATCAAGAAACACTGTGTATTGCTTCAATCGTTAATCATTGGAATACATCAGTACCGACGTAAGGGCAAGATCTTAGATTAAAAAGAAAAAGGTACAAATTTTCATTAATCAGATCCAGAAACTGGTAAACCAACAGTTTACACCTACTTCAACTAAAATTATCTATTAGGATTTACGCCACTAACCCTAGCAGACAAACCCTAATCAGCTTTAACCGTTAAAAGTTTCTTCTTAAGCCCTTTCTCCACGGATCCTCCTAGCAAGCTGAATATCTTTGGGCATGATAGTGACCCTCTTGGCGTGAATTGCACAGAGATTAGTATCTTCAAAGAGACCAACGAGGTAAGCCTCAGCAGCCTCTTGTAGAGCAGCCACAGCACTGCTCTGAAACCTCAGATCTGTTTTGAAATCCTGAGCGATTTCCCTCACTAGCCTCTGAAAAGGAAGCTTCCTGATCAACAACTCAGTAGACTTCTGGTACTTCCTGATTTCCCTTAAAGCTACAGTTCCTGGCCTGAAACGGTGAGGCTTCTTCACTCCTCCGGTAGCCGGAGCTGACTTTCTTGCGGCCTTGGTAGCTAGCTGCTTCCTTGGTGCCTTTCCACCAGTGGATTTGCGAGCAGTCTGCTTGGTACGGGCCATTTTGCTTTTTACTGATGAAAACTC</genome_strand>
        <mrna_strand>TGGGTACGGGCCCCCCTCG...............................................................................................................................................................................................................AGTTTTTTTTTTTTCTTATTTTTTTTTTTTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACACTGTGTATTGCTTCAATCGTTAATCATTGGAATACATCAGTACCGACGTAAGGGCAAGATCTTAGATTAAAAAGAAAAAGGTACAAATTTTCATTAATCAGATCCAGAAACTGGTAAACCAACAGTTTACACCTACTTCAACTAAAATTATCTATTAGGATTTACGCCACTAACCCTAGCAGACAAACCCTAATCAGCTTTAACCGTTAAAAGTTTCTTCTTAAGCCCTTTCTCCACGGATCCTCCTAGCAAGCTGAATATCTTTGGGCATGATAGTGACCCTCTTGGCGTGAATTGCACAGAGATTAGTATCTTCAAAGAGACCAACGAGGTAAGCCTCAGCAGCCTCTTGTAGAGCAGCCACAGCACTGCTCTGAAACCTCAGATCTGTTTTGAAATCCTGAGCGATTTCCCTCACTAGCCTCTGAAAAGGAAGCTTCCTGATCAACAACTCAGTAGACTTCTGGTACTTCCTGATTTCCCTTAAAGCTACAGTTCCTGGCCTGAAACGGTGAGGCTTCTTCACTCCTCCGGTAGCCGGAGCTGACTTTCTTGCGGCCTTGGTAGCTAGCTGCTTCCTTGGTGCCTTTCCACCAGTGGATTTGCGAGCAGTCTGCTTGGTACGGGCCATTTTGCTTTTTACTGATGAAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343605" ref_strand="+" ref_description="SGN-U343605        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT3G07040.1 | Symbol: None | disease resistance protein RPM1 (CC-NBS-LRR class), putative, domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. Identical to RPM1 (gi:1361985) | chr3:2225958-2229030 REVERSE | Aliases: F17A9.20 (evalue: 3e-30, score=112) genbank/nr: gi|24459845|emb|CAC82610.1| disease resistance-like protein [Coffea arabica](evalue: 3e-45, score=169)">
      <seq>atgatcctagacttaaggtggtttcggtggtgggaatgggaggttcaggaaagaccaccctggttaagaaagtgtatgaggatgcaacagtcaagaaaaacttcaatagtcttgcttggataacagtttccaagtccttcaaggttgaggaagttttgaaagatatgattcaacagctctacgatgaagtgaagcagccagcacctgaaggtctaaacaccatgagtagtaacagactaaaaacaattgcgaaagtattcctgcaatcaagaacatatgtgctagtttttgatgatgtttggagcattcaagcttgggaagctatcagatatgcattgcctgatgtaaatgacggaagtcgtgttatcctcacaacacgtcttttggatgtggcttccttttgtagcatagagaccaatggctatgtttatgaggtgaaacccttgtctactgaagagtcatggattcttttctgccaaaaggccccaattttttttttcatggcttttcatgtccttcacatttggagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="43282" stop="44402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43582" g_stop="44063" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-U343605" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43582" e_stop="44063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATCCTAGACTTAAGGTGGTTTCGGTGGTGGGAATGGGAGGTTCAGGAAAGACCACCCTGGTTAAGAAAGTGTATGAGGATGCAACAGTCAAGAAAAACTTCAATAGTCTTGCTTGGATAACAGTTTCCAAGTCCTTCAAGGTTGAGGAAGTTTTGAAAGATATGATTCAACAGCTCTACGATGAAGTGAAGCAGCCAGCACCTGAAGGTCTAAACACCATGAGTAGTAACAGACTAAAAACAATTGCGAAAGTATTCCTGCAATCAAGAACATATGTGCTAGTTTTTGATGATGTTTGGAGCATTCAAGCTTGGGAAGCTATCAGATATGCATTGCCTGATGTAAATGACGGAAGTCGTGTTATCCTCACAACACGTCTTTTGGATGTGGCTTCCTTTTGTAGCATAGAGACCAATGGCTATGTTTATGAGGTGAAACCCTTGTCTACTGAAGAGTCATGGATTCTTTTCTGCCAAAAG</genome_strand>
        <mrna_strand>ATGATCCTAGACTTAAGGTGGTTTCGGTGGTGGGAATGGGAGGTTCAGGAAAGACCACCCTGGTTAAGAAAGTGTATGAGGATGCAACAGTCAAGAAAAACTTCAATAGTCTTGCTTGGATAACAGTTTCCAAGTCCTTCAAGGTTGAGGAAGTTTTGAAAGATATGATTCAACAGCTCTACGATGAAGTGAAGCAGCCAGCACCTGAAGGTCTAAACACCATGAGTAGTAACAGACTAAAAACAATTGCGAAAGTATTCCTGCAATCAAGAACATATGTGCTAGTTTTTGATGATGTTTGGAGCATTCAAGCTTGGGAAGCTATCAGATATGCATTGCCTGATGTAAATGACGGAAGTCGTGTTATCCTCACAACACGTCTTTTGGATGTGGCTTCCTTTTGTAGCATAGAGACCAATGGCTATGTTTATGAGGTGAAACCCTTGTCTACTGAAGAGTCATGGATTCTTTTCTGCCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339818" ref_strand="+" ref_description="SGN-U339818        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT3G07040.1 | Symbol: None | disease resistance protein RPM1 (CC-NBS-LRR class), putative, domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. Identical to RPM1 (gi:1361985) | chr3:2225958-2229030 REVERSE | Aliases: F17A9.20 (evalue: 5e-24, score=108) genbank/nr: NBS-LRR(evalue: 2e-50, score=202)">
      <seq>agaacaggaacaacattagggaatggggaatgcttaatcacagccttggccctgaactggatagcaatgacaaatttgagagtatgagaatagttttgttactcagtttcaatgatctcccctactatcttaagccatgtttcctgtaattgagcacttatcctgaggattatctaattgagcgcaatacactgatctaccggtggataacgtaaggatttgtaaaacaaaaagatcggaggacagttgaagacgttgcagactgctatctcaatgagctcatcaacagaagcttgatccatcctgtgcagtacagtgatgacagtagcatgaaattgggtaggattcatgatctgtaccacgagcttattctatcagaatcaagagatgataactttactgcaacagttgatgagcataatagattgtggcctgaaaaaactcgacggctttcaatgcatggcatgttggggaacctacaagtgaaaaggtcagtcactaaacttcgctctttgcttacatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="43879" stop="45003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44179" g_stop="44703" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-U339818" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44179" e_stop="44703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACAGGAACAACATTAGGGAATGGGGAATGCTTAATCACAGCCTTGGCCCTGAACTGGATTGCAATGACAAATTTGAGAGTATGAGAATAGTTTTGTTACTCAGTTTCAATGATCTCCCCTACTATCTTAAGCCATGTTTCCTGTATTTGAGCATTTATCCTGAGGATTATCTAATTGAGCGCAATACACTGATCTACCGGTGGATAACGGAAGGATTTGTAAAACAAAAAGAACGGAGGACAGTTGAAGACGTTGCAGACGGCTATCTCAATGAGCTCATCAACAGAAGCTTGATCCACCCTGTGCAGTACAATGATGACGGTAGCATGAAATTGGGTAGGATTCATGATCTGTACCGCGAGCTTATTCTATCAAAATCAAGAGATGATAACTTTACTGCAACAGTTGATGAGCATAATAAATTGTGGCCTGAAAAAACTCGACGGCTTTCAATGCATGGCATGTTGGGGAACCTACAAGTGAAAAGGTCAGTCACTAAACTTCGCTCTTTGCTTACATTTG</genome_strand>
        <mrna_strand>AGAACAGGAACAACATTAGGGAATGGGGAATGCTTAATCACAGCCTTGGCCCTGAACTGGATAGCAATGACAAATTTGAGAGTATGAGAATAGTTTTGTTACTCAGTTTCAATGATCTCCCCTACTATCTTAAGCCATGTTTCCTGTAATTGAGCACTTATCCTGAGGATTATCTAATTGAGCGCAATACACTGATCTACCGGTGGATAACGTAAGGATTTGTAAAACAAAAAGATCGGAGGACAGTTGAAGACGTTGCAGACTGCTATCTCAATGAGCTCATCAACAGAAGCTTGATCCATCCTGTGCAGTACAGTGATGACAGTAGCATGAAATTGGGTAGGATTCATGATCTGTACCACGAGCTTATTCTATCAGAATCAAGAGATGATAACTTTACTGCAACAGTTGATGAGCATAATAGATTGTGGCCTGAAAAAACTCGACGGCTTTCAATGCATGGCATGTTGGGGAACCTACAAGTGAAAAGGTCAGTCACTAAACTTCGCTCTTTGCTTACATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339819" ref_strand="+" ref_description="SGN-U339819        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT3G46710.1 | Symbol: None | disease resistance protein (CC-NBS-LRR class), putative, domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. | chr3:17217474-17220017 REVERSE | Aliases: T6H20.260 (evalue: 2e-12, score=69.7) genbank/nr: NBS-LRR(evalue: 5e-30, score=129)">
      <seq>gatgacagaaccatgaacttgattatgattcatgatctgtgccaggagcttattctatcagaatcaagagatgataactttactgcaacagttgatgagcataatagattgtggcctgaaaaaactcgacggctttcaatgcatggcatgttggggaacctacaagtgaaaaggtcagtcactaaacttcgctctttgcttacatttggtgtagcagaaccacagtccttgtcttgcataagtcaagtgcttggtcgctcccggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="44196" stop="45061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44496" g_stop="44761" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-U339819" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44496" e_stop="44761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGACGGTAGCATGAAATTGGGTAGGATTCATGATCTGTACCGCGAGCTTATTCTATCAAAATCAAGAGATGATAACTTTACTGCAACAGTTGATGAGCATAATAAATTGTGGCCTGAAAAAACTCGACGGCTTTCAATGCATGGCATGTTGGGGAACCTACAAGTGAAAAGGTCAGTCACTAAACTTCGCTCTTTGCTTACATTTGGTGTAGCAGATCCACAGTCCTTGTCTTGCATAAGTCAAGTGCTTGGTAGCTCCCGGAT</genome_strand>
        <mrna_strand>GATGACAGAACCATGAACTTGATTATGATTCATGATCTGTGCCAGGAGCTTATTCTATCAGAATCAAGAGATGATAACTTTACTGCAACAGTTGATGAGCATAATAGATTGTGGCCTGAAAAAACTCGACGGCTTTCAATGCATGGCATGTTGGGGAACCTACAAGTGAAAAGGTCAGTCACTAAACTTCGCTCTTTGCTTACATTTGGTGTAGCAGAACCACAGTCCTTGTCTTGCATAAGTCAAGTGCTTGGTCGCTCCCGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345502" ref_strand="+" ref_description="SGN-U345502        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT3G07040.1 | Symbol: None | disease resistance protein RPM1 (CC-NBS-LRR class), putative, domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. Identical to RPM1 (gi:1361985) | chr3:2225958-2229030 REVERSE | Aliases: F17A9.20 (evalue: 4e-19, score=92) genbank/nr: NBS-LRR(evalue: 4e-47, score=191)">
      <seq>agtacctctgagatccattggaagactcaaacagctagaaatattagatctcaagcagacacatgtcactgagttgcctgtggagattttaaaacttgaaaatctccgtcaccttttagtctatagccatgtatcctattcgtatcttccttacaactgttcaccaggttttaaggctttccgaggaattggagctttgagagccttgcagaaacttgtgtatattgaggcaacccctggcagtggcatacttagagaagtaggaatgttgggtgaactgagacgactttgtattctgaagttgagaaaagaagatgggaggacagtgtgctcatcaattcaaaagctccgcaagcttgagtctttaaatcttaaatcggtggaagagcatgagatacttgatctttcttacatggcatctcctccgcctcttcttcagcgcctgtatttgacaggacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="44567" stop="45627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44867" g_stop="45327" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-U345502" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44867" e_stop="45327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTACTTCCAAGATCCATTGGAAGACTCAAACAGCTAGAAATATTAGATCTCAAGCAGACACATGTCACTGAGTTGCCTGTGGAGATTTTAAAACTTGAAAATCTCCGTCACCTTTTAGTCTATAGCCATGTATCCTATTCGTATCTTCCTTACAACTGTTCACCAGGTTTTAAGGCTTTCCGAGGAATTGGAGCTTTGAGAGCCTTGCAGAAACTTGTGTATATTGAGGCCACCCCTGGCAGTGGCATACTTAGAGAAGTAGGAATGTTGGGTGAACTGAGACGACTTTGTATTCTGAAGTTGAGAAAAGAAGATGGGAGGACAGTGTGCTCATCAATTCAAAAGCTCCGCAAGCTGGAGTCTTTAAATCTTAAATCGGTGGAAGAGCATGAGATACTTGATCTTTCTTACATGGCATCTCCTCCGCCTCTTCTTCAGCGCCTGTATTTGACAGGACACA</genome_strand>
        <mrna_strand>AGTACCTCTGAGATCCATTGGAAGACTCAAACAGCTAGAAATATTAGATCTCAAGCAGACACATGTCACTGAGTTGCCTGTGGAGATTTTAAAACTTGAAAATCTCCGTCACCTTTTAGTCTATAGCCATGTATCCTATTCGTATCTTCCTTACAACTGTTCACCAGGTTTTAAGGCTTTCCGAGGAATTGGAGCTTTGAGAGCCTTGCAGAAACTTGTGTATATTGAGGCAACCCCTGGCAGTGGCATACTTAGAGAAGTAGGAATGTTGGGTGAACTGAGACGACTTTGTATTCTGAAGTTGAGAAAAGAAGATGGGAGGACAGTGTGCTCATCAATTCAAAAGCTCCGCAAGCTTGAGTCTTTAAATCTTAAATCGGTGGAAGAGCATGAGATACTTGATCTTTCTTACATGGCATCTCCTCCGCCTCTTCTTCAGCGCCTGTATTTGACAGGACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342488" ref_strand="+" ref_description="SGN-U342488        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT3G07040.1 | Symbol: None | disease resistance protein RPM1 (CC-NBS-LRR class), putative, domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. Identical to RPM1 (gi:1361985) | chr3:2225958-2229030 REVERSE | Aliases: F17A9.20 (evalue: 2e-12, score=70.1) genbank/nr: NBS-LRR(evalue: 3e-32, score=142)">
      <seq>aagatcttaattccttagtcattatttacttcaggtggacccgtttatcagaagatccactgaaatatctccaagatttgcccaatcttgaatttcttgtaggatacaccggaagggaactgtactttgagcaaggcaaatttcaaaggcttaagcttttaaattttgacatgttggaaggactaaggcaggtgacaatcggggaaggtgcagtacctcattttgagaagctggttatccagcgatgtgctttgcttgagaccgtgccaactggaatagagtgcctcctaaatctgaaggttcttgaattctttgacatgcctgatgaatttatcatgacgttgcgtccagacaaactaggtgctgatgcttggaaagtttcacatatccgtgaagtattctatacatattggagggacggttgttggatggtacattcactaaaggaaaaggaaaacaatcacatttctgatccatctggagctgtgactaggacctatggaaggcgaaattcactctaagtcgtttgaaggacgtanagctccagtctccttccaatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="45052" stop="46223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45352" g_stop="45923" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-U342488" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45352" e_stop="45923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCTTAATTCCTTAGTCAAAATTTACTTCAGGTGGACTCATTTATCAGAAGATCCACTGAAATATCTCCAAGATTTGCCCAATCTTGTCCATCTTGAATTTCTTGTAGGATACACCGGAAGGGAACTGTACTTTGAGCAAGGCAAGTTTCAAAGGCTTAAGCTTTTAAATTTTGACATGTTGGAAGGACTAAGGCAGGTGACAATCGGGGAAGGTGCAGTACCTCATCTTGAGAAGCTGGTTATCCAGCGATGTGCTTTGCTTGAGACCGTGCCAACTGGAATAGAGTGCCTCCTAAATCTGAAGGTTCTTGAATTCTTTGACATGCCTGATGAATTTATCATGACGTTGCGTCCAGACAAACTAGGTGCTGATGCTTGGAAAGTTTCACATATCCGTGAAGTATTCTATACATATTGGAGGGACGGTTGTTGGATGGTACATTCACTAAAGGAAAAGGAAAACAATCACATTTCTGATCCATCTGGAGCTGTGACTAGGACCTATGGAAGGCGAAATTCACTCTAAGTCGTTTGAAGGACGTAGAGCTCCAGTCTCCTTCCAATTTCT</genome_strand>
        <mrna_strand>AAGATCTTAATTCCTTAGTCATTATTTACTTCAGGTGGACCCGTTTATCAGAAGATCCACTGAAATATCTCCAAGATTTGCCCAATCTTG---A------ATTTCTTGTAGGATACACCGGAAGGGAACTGTACTTTGAGCAAGGCAAATTTCAAAGGCTTAAGCTTTTAAATTTTGACATGTTGGAAGGACTAAGGCAGGTGACAATCGGGGAAGGTGCAGTACCTCATTTTGAGAAGCTGGTTATCCAGCGATGTGCTTTGCTTGAGACCGTGCCAACTGGAATAGAGTGCCTCCTAAATCTGAAGGTTCTTGAATTCTTTGACATGCCTGATGAATTTATCATGACGTTGCGTCCAGACAAACTAGGTGCTGATGCTTGGAAAGTTTCACATATCCGTGAAGTATTCTATACATATTGGAGGGACGGTTGTTGGATGGTACATTCACTAAAGGAAAAGGAAAACAATCACATTTCTGATCCATCTGGAGCTGTGACTAGGACCTATGGAAGGCGAAATTCACTCTAAGTCGTTTGAAGGACGTANAGCTCCAGTCTCCTTCCAATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335074" ref_strand="-" ref_description="SGN-U335074        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>agtaactcaagccagtcctactacatcggaaattcagggtgagctaatgcttctaggtttgactggatcttcttcttcaagtcttgatgccttgaacttccggcatggactagcttcgtatgtatttttagcttcttagaatactcttagtttagtaattttatgatagaggctctggtgatgatgacttccagattttggggaatgataagttttgagttatacaagttgattattgatttttattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="58109" stop="40863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50764" g_stop="50539" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50538" i_stop="50152" i_length="387">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.448" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50151" g_stop="50123" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="252" r_length="29" r_score="0.586"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50122" i_stop="50033" i_length="90">
            <donor d_prob="0.406" d_score="0.00"/>
            <acceptor a_prob="0.212" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50032" g_stop="50020" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="265" r_length="13" r_score="0.615"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-U335074" ref_strand="-">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335074" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50764" e_stop="50539"/>
          <exon e_start="50151" e_stop="50123"/>
          <exon e_start="50032" e_stop="50020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTT-TTAGAATACTCTTGGTTTAGTCATTTGATTGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATGATAATAATAGTTTTGAATTGTTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGATATACGTTGAAATGTTAAGGGTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCTCGGATTTGGGTCGTGACATGTCCCAAGGTAAATTATCTTTTAATCCGAGTCTTGAATCTTTTTGATGATTAGGAATTTAGTTATTGTATATTTTTATCTTATGGTTTAGTCACACTCTCCCTTACACTAGTACTTATGCAATTAGGATGGTATTGGATTCTCTGGTCTCACCATCTACTAACCTGCCTGAGTTTAAAAGTTCCAATCTTGAATATACATAAGGCTGCTCAATTTACAAATCTTGTAATAGCATACATATAAATGTTCAGGTCAGGTGAATATTGAAGATTTGTAGCAAGTATATGACTGTAACACTACTTATCCTAATAGATTAAGTTTACTGATTCCATCACTTCTTTTCTTTTGGCATAATATCAATATCATTCAGCAAAGTCAAACAA</genome_strand>
        <mrna_strand>AGTAACTCAAGCCAGTCCTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGGTTTGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCGTATGTATTTTTAGCTTCTTAGAATACTCTTAGTTTAGTAATTTTATGATAGAGGCTCTGGTGATGATGACTTCCAGATTTTGGGGA--ATGAT-A-AGTTTTGAGTTAT...................................................................................................................................................................................................................................................................................................................................................................................................ACAAGTTGATTATTGATTTTTATTAAAAA..........................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="52648" stop="53425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52948" g_stop="53124" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52948" e_stop="53124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATCAATGCTTGAGTGATAGTTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="54129" stop="55441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54429" g_stop="55141" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54429" e_stop="55141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTATATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACGCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGCTGTGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335938" ref_strand="+" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>tgtagtctatgcacattcaaaaactgccgatctttacaacaaaaccggagcaccccaaggagatgcacttggtctaatgaagcctttgttcaataactcttgaagttgtgcctttaactctcttaactctgcgggagccattctataagggggtataaaaatggggcgtgtgcccggttcgagatcaatacagaagtcaatatccctatccggtggcataccaggatgatctgcagggaacacatccataaactcacgaactactgaaactgagtcaatcgaaggtacttgggtagtgttatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatacgcaccggattggaagtgtagtcaccctcctacactaacagatctgtcccaggcttggctaacgtcacggttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcgaagtcaaccatttcttgcaaggattttgccgtagccgctacctgtaacgctgaaatccgcaactctgacctcaaccctttcacaaaacgacgaatcctctcttgtggactgaaacaaagttgagtggcatatctggatagtgcacgaaacttagcctcatatgcattgacctacatcctaccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="54737" stop="56745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55001" g_stop="55511" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55512" i_stop="56255" i_length="744">
            <donor d_prob="0.106" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56256" g_stop="56445" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="694" r_length="190" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-U335938" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55001" e_stop="55511"/>
          <exon e_start="56256" e_stop="56445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGCTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACGCACGAACTACTGAAACCGACTCAATCGTAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCCTAGCACAAAGAAAGGAGACGATGCGGACCGGATTGGGAGTGTAGTCACCATCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAATCATACCCAGAATCACGTCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTGGAGACACGAATGGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGGTGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCAACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTTTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAAATCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGC</genome_strand>
        <mrna_strand>TGTAGTCTATGCACATTCAAAAACT-GC--CGATC-T-T-TACAA-CAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAAAAATGGGGCGTGTGCCCGGTTCGAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGATGATCTGCAGGGAACACATCCATAAACTCACGAACTACTGAAACTGAGTCAATCGAAGGTACTTGGGTAGTGTTATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCTACACTAACAGATCTGTCCCAGGCTTGGCTAACGTCACGGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAGTCAACCATTTCTTGCAAGGATTTTGCCGTAGCCGCTACCTGTAACGCTGAAATCCGCAACTCTGACCTCAACCCTTTCACAAAACGACGAATCCTCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCTACATCCTACCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="54718" stop="56075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55018" g_stop="55775" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55018" e_stop="55775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGCTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACGCACGAACTACTGAAACCGACTCAATCGTAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCCTAGCACAAAGAAAGGAGACGATGCGGACCGGATTGGGAGTGTAGTCACCATCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAATCATACCCAGAATCACGTCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTGGAGACACGAATGGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335930" ref_strand="+" ref_description="SGN-U335930        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-35, score=150)">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="55327" stop="56486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55628" g_stop="56186" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-U335930" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55628" e_stop="56186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACGAATGGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGGTGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCAACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTTTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAAATCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317064" ref_strand="+" ref_description="SGN-U317064        Tomato 200607 #1 [6 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 5e-64, score=248)">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccgggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagctgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgtcgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="55332" stop="57367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55632" g_stop="57067" g_length="1436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1437" r_length="1437" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-U317064" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>1436</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55632" e_stop="57067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATGGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGGTGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCAACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTTTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAAATCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCGATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGCAGTAGCTCGTGACAGTCAACTAGAAAATCATAAGCATCCTCAAATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGC-TATTGTACTTCCGGAGCCTGAGGTGCTGGTGCAGAGAACACTGGGGGTGTCTGGCCTTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCGTTTCCTCATTTTGCACTTGTTCAGTTTCCCCAT-CCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGGGGAGTCACTGCCCTAGTATCAGATGGTCT</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCGGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335932" ref_strand="+" ref_description="SGN-U335932        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|2190718|gb|AAB64397.1| beta-galactosidase [unidentified cloning vector](evalue: 3e-14, score=80.1)">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="56407" stop="57439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56707" g_stop="57138" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-U335932" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56707" e_stop="57138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGC-TATTGTACTTCCGGAGCCTGAGGTGCTGGTGCAGAGAACACTGGGGGTGTCTGGCCTTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCGTTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGGGGAGTCACTGCCCTAGTATCAGATGGTCTAGGTGCTTGTCCTCTCCCTCTAGAGGACGTCCTCCCACAACCTCTTCCACGGCCCCTTGCCGTTGTTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335073" ref_strand="+" ref_description="SGN-U335073        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="57730" stop="56845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57430" g_stop="57145" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-U335073" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57430" e_stop="57145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAATAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACATCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333102" ref_strand="+" ref_description="SGN-U333102        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>agaataggattttaataatttttagataaaaaaaagggttctcttcactgtatttcctctttccggccagctcactgccggagcaccatctcccaaaggccaccaccaccaaaaagttggctagaacaattcatatttttcggtgaagctccaaccagccactaaatcgctgctaaactcagcctcgttccttcacgaacagccaaccaaacagatccatgtcctcctttcttcttctcttctccgaccaaacatcgctcaacccaaacttcccttctgttttcagccaacaacaccagaaaaaacctccaaaacccccaccaaaagccatcggaaataaccattaactccgaccataacgttgccaatagaaaatccaaccagatttaaacctcactggtccagcttcgcaaagccacgacgccaaattccggcgaaactagacccaaaaccccaccgcccagtccctttctctccccctttacgattttgttcatcttgtaggtattccggcgaaacttcgaactccgggcagctgcgaaccaacaacaccaagaacttgaaatttcgatgacccttctctctttttcacattgnttgtataaggntatgttgatttttagattccagatgttattgttacttcttgttngttgttatcacttgggattntaaagtttattttttggcacttgcttatgtttccagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="63885" stop="62574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63585" g_stop="62874" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-U333102" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63585" e_stop="62874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATAGGATTTTAATAATTTTTAGATAAAAAAAAGGGTTCTCTTCACTGTATTTCCTCTTTCCGGCCAGCTCACTGCCGGAGCACCATCTCCCAAAGGCCACCACCACCAAAAAGTTGGCTAGAACAATTCATATTTTTCGGTGAAGCTCCAACCAGCCACTAAATCGCTGCTAAACTCAGCCTCGTTCCTTCACGAACAGCCAACCAAACAGATCCATGTCCTCCTTTCTTCTTCTCTTCTCCGACCAAACATCGCTCAACCCAAACTTCCCTTCTGTTTTCAGCCAACAACACCAGAAAAAACCTCCAAAACCCCCACCAAAAGCCATCGGAAATAACCATTAACTCCGACCATAACGTTGCCAATAGAAAATCCAACCAGATTTAAACCTCACTGGTCCAGCTTCGCAAAGCCACGACGCCAAATTCCGGCGAAACTAGACCCAAAACCCCACCGCCCAGTCCCTTTCTCTCCCCCTTTACGATTTTGTTCATCTTGTAGGTATTCCGGCGAAACTTCGAACTCCGGCAAGCTGCGAACCAACAACACCAAGAACTTGAAATTTCGATGACCCTTCTCTCTTTTTCACATTGTTTGTATAAAGTTATGTTGATTTTTAGATTCCAGATGTTATTGTTACTTCTTGTTGTTTGTTATCAACTTGGGATTTTAAAGTTTATTTTTTGGCACTTGCTTATGTTTCCAGCTT</genome_strand>
        <mrna_strand>AGAATAGGATTTTAATAATTTTTAGATAAAAAAAAGGGTTCTCTTCACTGTATTTCCTCTTTCCGGCCAGCTCACTGCCGGAGCACCATCTCCCAAAGGCCACCACCACCAAAAAGTTGGCTAGAACAATTCATATTTTTCGGTGAAGCTCCAACCAGCCACTAAATCGCTGCTAAACTCAGCCTCGTTCCTTCACGAACAGCCAACCAAACAGATCCATGTCCTCCTTTCTTCTTCTCTTCTCCGACCAAACATCGCTCAACCCAAACTTCCCTTCTGTTTTCAGCCAACAACACCAGAAAAAACCTCCAAAACCCCCACCAAAAGCCATCGGAAATAACCATTAACTCCGACCATAACGTTGCCAATAGAAAATCCAACCAGATTTAAACCTCACTGGTCCAGCTTCGCAAAGCCACGACGCCAAATTCCGGCGAAACTAGACCCAAAACCCCACCGCCCAGTCCCTTTCTCTCCCCCTTTACGATTTTGTTCATCTTGTAGGTATTCCGGCGAAACTTCGAACTCCGGGCAGCTGCGAACCAACAACACCAAGAACTTGAAATTTCGATGACCCTTCTCTCTTTTTCACATTGNTTGTATAAGGNTATGTTGATTTTTAGATTCCAGATGTTATTGTTACTTCTTGTTNGTTGTTATC-ACTTGGGATTNTAAAGTTTATTTTTTGGCACTTGCTTATGTTTCCAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334064" ref_strand="+" ref_description="SGN-U334064        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | histone H3, identical to histone H3 from Zea mays SP:P05203, Medicago sativa GI:166384, Encephalartos altensteinii SP:P08903, Pisum sativum SP:P02300; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4 | chr3:10130520-10131174 REVERSE | Aliases: K1G2.15(evalue: 2e-58, score=223) genbank/nr: gi|19609|emb|CAA31965.1| unnamed protein product [Medicago sativa] >gi|19607|emb|CAA31964.1| unnamed protein product [Medicago sativa] >gi|21797|emb|CAA25451.1| unnamed protein product [Triticum aestivum] >gi|55977043|sp|P68428|H3_WHEAT Histone H3 >gi|55977041|sp|P68427|H3_PEA Histone H3 >gi|55977045|sp|P68430|H3_ONOVI Histone H3 >gi|55977044|sp|P68429|H31_MEDSA Histone H3.1 (Major histone H3) >gi|2565419|gb|AAB81995.1| histone H3 [Onobrychis viciifolia] >gi|488565|gb|AAB49545.1| histone H3.1 (evalue: 1e-56, score=223)">
      <seq>atctataagcctttcactttagcataaaattgaaatggctcgtaccaagcaaactgcccgcaaatctactggtggaaaggctccaaggaagcaactggtccccaagtctgttttcaagtcagttctaacaagtggaagagtgaagaagcctcaccgttttatgccaggaactgtggctctaagagaaatcaggaagtaccagaaatctactgagttgatgatcaggaagttgccattccagaggctggttaggcaaactgctctggatttcaagagagatctgaggttccagagcagtgctatgactattctataagaggctgctgaggcttacctcgttgggctctttgaagataccaatctttgtgcaattcacgcaaagagggttaccatcatgcccaaggatattcagcttgctagaaggattcgcggagaaagggcttagaaatctttttttatgtttatgattaatttgtgttttgtattggggtcttgtttacttcttctgttaaatgctagtgtcaatcaaattatgtaaacctctggtttagttctattctgagatctggttaatgaaatttatagttcattttatttcaattgaagatgctacccatactataattcagagtatattttgagttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="70565" stop="69320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70265" g_stop="69621" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-U334064" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70265" e_stop="69621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATAAGCCTTTCACTTTAGCATAAAATTGAAATGGCTCGTACCAAGCAAACTGCCCGCAAATCTACTGGTGGAAAGGCTCCAAGGAAGCAACTGGTCCCCAAGTCTGTTTTCAAGTCAGTTCTAACAAGTGGAAGAGTGAAGAAGCCTCACCGTTTTATGCCAGGAACTGTGGCTCTAAGAGAAATCAGGAAGTACCAGAAATCTACTGAGTTGATGATCAGGAAGTTGCCATTCCAGAGGCTGGTTAGGCAAACTGCTCTGGATTTCAAGAGAGATCTGAGGTTCCAGAGCAGTGCTATGACTATTCTATAAGAGGCTGCTGAGGCTTACCTCGTTGGGCTCTTTGAAGATACCAATCTTTGTGCAATTCACGCAAAGAGGGTTACCATCATGCCCAAGGATATTCAGCTTGCTAGAAGGATTCGCGGAGAAAGGGCTTAGAAATCTTTTTTTATGTTTATGATTAATTTGTGTTTTGTATTGGGGTCTTGTTTACTTCTTCTGTTAAATGCTAGTGTCAATCAAATTATGTAAACCTCTGGTTTAGTTCTATTCTGAGATCTGGTTAATGAAATTTATAGTTCATTTTATTTCAATTGAAGATGCTACCCATACTATAATTCAGAGTATATTTTGAGTTA</genome_strand>
        <mrna_strand>ATCTATAAGCCTTTCACTTTAGCATAAAATTGAAATGGCTCGTACCAAGCAAACTGCCCGCAAATCTACTGGTGGAAAGGCTCCAAGGAAGCAACTGGTCCCCAAGTCTGTTTTCAAGTCAGTTCTAACAAGTGGAAGAGTGAAGAAGCCTCACCGTTTTATGCCAGGAACTGTGGCTCTAAGAGAAATCAGGAAGTACCAGAAATCTACTGAGTTGATGATCAGGAAGTTGCCATTCCAGAGGCTGGTTAGGCAAACTGCTCTGGATTTCAAGAGAGATCTGAGGTTCCAGAGCAGTGCTATGACTATTCTATAAGAGGCTGCTGAGGCTTACCTCGTTGGGCTCTTTGAAGATACCAATCTTTGTGCAATTCACGCAAAGAGGGTTACCATCATGCCCAAGGATATTCAGCTTGCTAGAAGGATTCGCGGAGAAAGGGCTTAGAAATCTTTTTTTATGTTTATGATTAATTTGTGTTTTGTATTGGGGTCTTGTTTACTTCTTCTGTTAAATGCTAGTGTCAATCAAATTATGTAAACCTCTGGTTTAGTTCTATTCTGAGATCTGGTTAATGAAATTTATAGTTCATTTTATTTCAATTGAAGATGCTACCCATACTATAATTCAGAGTATATTTTGAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343276" ref_strand="+" ref_description="SGN-U343276        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47900689|gb|AAT39288.1| putative transposase [Solanum demissum] (evalue: 1e-37, score=159)">
      <seq>atatataataatcttaaattccggtgttgccttatttggtctttgaaaatttgatttgaagcttcaaaattcaactttcaacttttcacgttcggctttcggcggtcataaacgtctacttttttaagtagacgttcgaacctactgaagatattctagcatgctggagaaatcgcggcaaaggatttccaaaactacaaccgatggctcgagaatatattagcaatgcaagcgtcgtcagtagcttcggaaggcgtctttagtgcagcaaggtttcaacttggagaacatagacattcattagcagccgacagcttggatatatcggtattattttgagcttggattaatgccgagagaagaaatttgagtcgtgaaccaccaccgaccaaatttcaagatgacgttgatgaagtaatgttggattatagtgacgacgagattgaagtaatggaaaatctttctattcaaccaattcccgaacatgttactaaggaaatgttgaatgatttacgaagagatttatatggtggcacgaactattagtaaaagtatgataattcgagatttaattcaaacagaacccttcctagaaggtgggctgtgtaaattaaatcttttaatactctactaatatttttgtaaatgtaattgtaatatcaaataaatattaataaaaatataggctattcgccttaatttattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="78298" stop="74786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77998" g_stop="77875" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77874" i_stop="76461" i_length="1414">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.772" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76460" g_stop="76449" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="138" r_length="13" r_score="0.583"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76448" i_stop="75650" i_length="799">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.693" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75649" g_stop="75086" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="708" r_length="570" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-U343276" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77998" e_stop="77875"/>
          <exon e_start="76460" e_stop="76449"/>
          <exon e_start="75649" e_stop="75086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATAAT-ATTTTAAATTCCAGTGTTCCCTTATTTAGTCTTTGGAAATTAGATTTGGAGCTTCAAAATTCAATTTTCAACTTTCCACGTTCGGCTTTCGGCGGTCATAAACGTCTACTTTTCGGTACATTTGTTTCAACTTTTATTTTACGTTTAATTTATATTTAAATAATTATTTATTTATTTTGTGATTTATTATTTGCATTACATTTTTCGTATTATATATAATCTCACGTTTAATTTTTTAATATGGATTTCGATAAAAATATTGTTCAAAAAGGAAAAGAGAAAAAAAGTGCAATAGAGCGTGTAAAAAATATTTGTAACTTTACATCCTCCGATAATGCAAAAATCGATAGTTCTTCTAAATCAAAAACTAAAAAATCTACTATATTAAGAATAAATACAGATGATTATACACATGTTGATGATACGGTTTTTAATATCGATAGTAATTCATGATTAGATCCTTATCATGAACATTTACAACGTTGTTTTGATAATTTTGATGAGAATTTGCCTAGTGATAATGATAATGATAATGATATTGATAATTATACTAATACGCCTACTTTTGATGATGATGATGATGAAACTGAGCCACCTACGGCTACTAATACTCCCAGTCTTGCTCCCTTTTGTTGTCTTGCCCCTGTTCCCCCAGTACACCCTAGGCCTAAGGTAGAACGTGTTAAAAAATCGATTGTTTGGCAATTTATGACACAAAACGAAGATAAAACACAAGCTATTTGTAATAAATGTAAACATAGATTAAATCATAAAATTGTTGGTAAATCTGGCGGGACGAGACATTTGAGTAGTCATTTAATGTCTTGTTGTAAAAATGAATTTTTGCATGCTAAAGCGGTAGCAAAGCTAAAAAAAAATGGTACCCCCTTCTTGAAAATGTAGGAGTAGGCGTCTCTAACATGGTACAAACACAATTAAATCTGTATAATGTTTTTGGCTCTAGTTTACCACTTTCATATAGTAGAGAAAAAGATCTTCAAGAACTAGCTAAAATGATATGTGTTATGAGTTTCCCATTTAGTTTTGCTGAAAATTTCAATTTTATACATTATATTCAAATTGTATATAATCCAAATTTTAAAGGTTTTGCTAGAAATACAATAAAAAATGATGTATTTGATTATCATGCACCACATTTTCAATATCTTCGTCGTTTATTCAATTATAATACTTGTAAAATAGCTATTACTTCTGATATGGGTCATAGTGTAAGTGGTAACGATTATTTGACTATTACTGCAAATTGGATTGATGAAAATTGGTATATGCAAAAAAGAATTTTTGGTTATAAATATTGTCAAATGTAAAAAACTGGTAGTTATATTGCTCAAACTATTTTTAGATGTTTTACAAAGTTATGAAATATGTGATAAAATAAGTAGTATAACCTTAGATAATGCTTCAAGTAATAAAGTTGTTGTTGAATATTTAAAACCTATTCTCTGTCCTTTCTATGGTGATAATTATCATATTATGTGTACTGCACATATATATAATTTGATGGTTAG-AGATGACGTACGGATGTATGATAACGAATGTACGAAAGTTGAAAATGTATGTCATTTTATATTTAAATGTCAAGTTAAGTCTAGGCGTAAAGATTTTCAAAATTGTTGTTTTGACAATAATCTTCCACCTAGAAAAATTCCAAAAACAGTAGCTACTAGATGGAATACTTTATATGAAATGCATCTAGTCACTCGTGAATTTAAAAAACCCTTACAAATGGTTTCGAATGCTTATAATTCTGATATGACATATAAACTAGATGATAGTGATTGACGTGATATAAATGAAGTTATAGATTTTCTAAAAGTTTTTTACTTAACTACAAAAGAATATTTGTACTTTATAGTCCATTAATTTGTATTGTTTTGCCTGATATTTGTAGGATTTCTTCTAAATTATATCAGTTTAATAATAAACGAAGATTTCAACAAACCATTGAAAAAATGATTCTAAAATTTAAAAAATATTATATTTCTATTCCTCAAATTTATTTAACCGCGTGTTTGTTAAACTCTCATTATAAAGATGTAGGTGCATCAAAAATGGTTGAAAAAATGTATTTTAACTTAGATATTAATGATGTATTAGAAGAAATTCCTAGTTGTCAACAAGTTAAAGATAGCATAAAAATTGAAGCTAGAAAATTGTATGATTTATATAATGCTAATATAAATTTATCAAGTGAATATGAACTTCAAAACTCTAGGGTTAGATTTGATGAAAATAATATTGATGATTATTTACATGATTATCTTGAACTTTCTCACGATAATAGAAATGATTTTGATGCCTATGTTACTCAAAATACAGAACCTACTGAAGATATTCTCCAATGGTGGAGAAATCGCGGCAAAGGATTTCCAAAACTAGTACCGATGGCTCGAG-ATATATTAGCAATGCAAGCGTCGTCGGTAGCTTCGGAAGGCGTCTTTAGTACATCAAGG-TTCAACTTGGAGAACATAGGCATTCGCTAGCAGCCGACAACTTGGAGATATCTGTATTATTTCGATATTGGATTAATGTCGAGAGAAGAAATTTGGGTCGTGAACCACTACCGACCAAATTTCAAGATGACGTTGATGAAGTAATGCAGGATTATAGTTACAACGGGATTGAAGCAATGGAAGATCTTTTTATTCAACCAATTCCCGAACATGTTACTAAAGAAATTTTGAATGATTTATGAAGGGATTTATATGGTGGCACCAACTATTAGTAAAAGTATGATAATTCAAGATTTAATTCAAACAGAACTCTTCCTAGAAGGT-GGTTGTGTAGATTAAATCTTTTAATACTTTATTAATATTTTTGTAAATGTAATTATAATATCAAATAAATATTAATAAAGAT-T--GCTATTCGCCTTAATTTGTTTTT</genome_strand>
        <mrna_strand>ATATATAATAATCTTAAATTCCGGTGTTGCCTTATTTGGTCTTTGAAAATTTGATTTGAAGCTTCAAAATTCAACTTTCAACTTTTCACGTTCGGCTTTCGGCGGTCATAAACGTCTACTTTTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTAGACGTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTACTGAAGATATTCTAGCATGCTGGAGAAATCGCGGCAAAGGATTTCCAAAACTACAACCGATGGCTCGAGAATATATTAGCAATGCAAGCGTCGTCAGTAGCTTCGGAAGGCGTCTTTAGTGCAGCAAGGTTTCAACTTGGAGAACATAGACATTCATTAGCAGCCGACAGCTTGGATATATCGGTATTATTTTGAGCTTGGATTAATGCCGAGAGAAGAAATTTGAGTCGTGAACCACCACCGACCAAATTTCAAGATGACGTTGATGAAGTAATGTTGGATTATAGTGACGACGAGATTGAAGTAATGGAAAATCTTTCTATTCAACCAATTCCCGAACATGTTACTAAGGAAATGTTGAATGATTTACGAAGAGATTTATATGGTGGCACGAACTATTAGTAAAAGTATGATAATTCGAGATTTAATTCAAACAGAACCCTTCCTAGAAGGTGGGCTGTGTAAATTAAATCTTTTAATACTCTACTAATATTTTTGTAAATGTAATTGTAATATCAAATAAATATTAATAAAAATATAGGCTATTCGCCTTAATTTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323724" ref_strand="+" ref_description="SGN-U323724        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | tetratricopeptide repeat (TPR)-containing protein, contains Pfam profile PF00515: TPR Domain | chr3:19343907-19352635 FORWARD | Aliases: F4F15.250(evalue: 0, score=653) genbank/nr: gi|42565852|ref|NP_190782.3| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] (evalue: 0, score=653)">
      <seq>ggaactatgaacttttctcatttatgggatctttgttggaacgagggtcttgtcagatgtgcaaagcacatcctcaaagatttgctgagggatgctgaggaccatgatcttgcaaacacaatctcacatttttacaactgtttgtttggaaatatgcaaacagtatctaataaaggcggcgccaacagttctagaaaccaaaagaaggaccacgttgggaaccagcaaaagtcatccaagggacagggaaagcgaaaaaatgtaggatctgccaagaagaaacagtcctcctatttgagtatcacgtctgacagtttgtggtctgacatccaagaatttgcgaaactcaagtatcagtttgagttgcctgacgatgcaaaaatgctggtaaagaaaattccagttgtacgcaatctctgtcagaaggtaggtgtaaccgttgcagctcgtaaatatgaccttgactctgttgcaccttttcaagcatcagatattatgaatctccaaccagtggtgaagcattctatcccagttagttcagaagctaaggaccttgttgaaacaggaaaggctcaattagctgagggtttgcttagtgaggcctacactttattttccgaagcattcacaatacttcagcaggtgacgggtccgatgcaccgggaagttgccaattgttgtcgctaccttgctatggttctatatcatgctggagatatggctggtgctataatgcaacagcacaaggaacttatcataaatgaaagatgccttggactggaccatcctgacactgcacacagttatggaaacatggctcttttctatcatggtcttaaccaaacagaacttgcattgaggcatatgtcacgggccttgcttcttcttggcttgtcatcaggtcctgatcatccggatgttgccgcaacatttataaatgttgcaatgatgtaccaagatattgggaagatggatacagcacttcgttatctccaagaagcattgaaaaagaatgaacggttgcttggggaggaacatattcagactgctgtttgttatcatgctctggcaattgcgttcaactgtatgggtgctttcaagctttcgcaccagcatgaaaagaaaacttatgatatactagccaaacagctgggagaggaggattcaaggacacgcgattctcagaactggatgaaaacatttaagatgcgtgagctgcagatgaatgcacaaaagcagaaaggtcaatctctgaatgtggcttctgcacagaaggcttatgatattttaaaggctcatccaagcttgttacaccgccatttcaagctgccgctggaggtacctggtattggtggaatgaaccaatcattaagttctgcagtaccttggtgatgggcttcctcggggaagaggagttgatgaaagaactgcaccgagcctgctgctgaagtaccggaaaaaagctgcagcaaggggtcttcttgtaccgtcccagtggtgttcctgcatcatctttacctcctcttacccagctacctcaatgtaataaattctggcaccaacaccggatgctgcaaatcctagtggaactaatgaagaaaagaaagaagcaaacagtaattcttctaatggatctggagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="92358" stop="98220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92658" g_stop="92735" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92736" i_stop="93252" i_length="517">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93253" g_stop="93381" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="207" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93382" i_stop="94174" i_length="793">
            <donor d_prob="0.307" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94175" g_stop="94324" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="357" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94325" i_stop="94422" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94423" g_stop="94491" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="426" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94492" i_stop="95728" i_length="1237">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95729" g_stop="95887" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="585" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95888" i_stop="96036" i_length="149">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96037" g_stop="96093" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="642" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96094" i_stop="96177" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96178" g_stop="96218" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="683" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96219" i_stop="96367" i_length="149">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96368" g_stop="96487" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="803" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="96488" i_stop="96626" i_length="139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="96627" g_stop="96936" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="804" r_stop="1113" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="96937" i_stop="97020" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="97021" g_stop="97200" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1114" r_stop="1293" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="97201" i_stop="97580" i_length="380">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="97581" g_stop="97920" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1294" r_stop="1643" r_length="350" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-U323724" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>1633</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92658" e_stop="92735"/>
          <exon e_start="93253" e_stop="93381"/>
          <exon e_start="94175" e_stop="94324"/>
          <exon e_start="94423" e_stop="94491"/>
          <exon e_start="95729" e_stop="95887"/>
          <exon e_start="96037" e_stop="96093"/>
          <exon e_start="96178" e_stop="96218"/>
          <exon e_start="96368" e_stop="96487"/>
          <exon e_start="96627" e_stop="96936"/>
          <exon e_start="97021" e_stop="97200"/>
          <exon e_start="97581" e_stop="97920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACTAGGAACTTGCCTCATTTATGGGATCTTTGTTCCAACGAGATTCTTGTCAGATGTGCAAAGCACATCCTCAAGGTGATTAATTTTGTTCTTCAGATTGTTATAGGGTTTTGAATGTTGTTCATAAAAAATAAGTTTTTCATTGCTACTTTAAAAAGCCTTAATAATATTGGATCGTGAATGTACTTTATCTTATGCTTTGACAAGTGTGGTCCCACTTGAGAACATGCTTCACCATTTGGTCCTGAACAGCATTTTTGTATTTCTCTCAAAGGATCAATTATTTTGTGTCTCATGTGTCTCAACATTTTTGTTTAGCATTATTAGTAGAATGATGAAGTGTTATTTTTTTCACCTGCTTTTATTTCTTAATTCTTCTGGTCAAAAGCTCTCTTAAATCAACAAAAGGGCATTTTTAGGCTCTAGTGGTTTCAAAATATTCATTTACGCTTAACCACATAATGTGTAAGCTGGAGCACACGTGATATTTTACTCTGATTATCTTGATGCAGGGAACTGAAGAAATTGAATATTAATTTATATGTTTATGGATTTTTGAATTACTAACAATTTGATCTGATGGGACACGCAGGATTTGCTGAGGGATGCTGAGGACCATGATCTTGCAAACACAATCTCACATTTTTACAACTGTTTGTTTGGAAATATGCAAACAGTATCTAATAAAGGCGGCGCCAACAGTTCTAGAAACCAAAAGAAGGTAGAGAGAGAGAGAGCGCTTATTGTCATAACTTACTGCCATTTATTGCTATTTCTTGTAGTAAAATACCATGAGGAAGTTCTGTTGAATTGAGTGTACCACCTCATCTAAAAGCTTAACCTATTAAAACTTAGGGGAAAGTTTTATTTATTTATTTAGGTTTACAACATGCCCCTCAAGTGCTGATGTGATTCTTTTTATTTGGCCATCACTGAAAATATATTGTTGATGAGTAACAGTGACTTAGTATAACATCTCTAGCAGATCTAATACCATGTTGAGTTATGCATACCACACCTCCTGTAAAAGCTTGAGTTATTAGGGTGGGTTGCTTTCTCCCCTCTTTTTATAGCATTCCCGTGCTTGGCCAATATTATTCATTTGTATGCTGATATTTGAAGATGCATATGGAGATTATTAGTTTCATTGTTTGAAAATTTATGTTGGCTGTATAGAGAAAGCATTTTCTAGAATCATTTAAGCTTTATGTGCATAATGAGAATAATACATAGAATATATTCTTCATTGTACGTGATCTATTTTCATCATTTGTTTGATGATGAGCCTTTTGTGAAGACACAGTTACCTTCACCTATATATATATACATACATATACATACATGTACATATATACACACACACACACACATATATATATATACACATACATATACATACATATACATATATACACACACACACACACATATATATATATTCTTCATTATTTCTCAGAGAAGAGTATATGGTAAATGATTTTAATAAAATTAATTCTATGAAACACATTTCATAGGACCACGTTGGGAACCAGCAAAAGTCATCCAAGGGACAGGGAAAGCGAAAAAATGTAGGATCTGCCAAGAAGAAACAGTCCTCCTATTTGAGTATCACGTCTGACAGTTTGTGGTCTGACATCCAAGAATTTGCGAAACTCAAGTATCAGGTATCATATTCTTTTAAGAACCTCTTCCAGTTGCTTTCCCAGATGTTTTAAGTTACCAGTTAAGGTTGATTTCTCTCTCTCTCTCTCTCTCTCTTCAGTTTGAGTTGCCTGACGATGCAAAAATGCTGGTAAAGAAAATTCCAGTTGTACGCAATCTCTGTCAGAAGGTATTTTCATCCAGGAATTCTTAGATTTAGTTGTGATTATGCATTTCTTACTATTGCTATTTTCCCTTTATCCCTGTATTATCTTATATTGGTCAATCATTATCATCTTTTCGAAGTGGCTATGGTGCCATATAGAGGTGTCAAATTGGGTTGAACTGGACGGGTTGGGTTGAAATGGACTAAAATGCAGGTCATAACCCAACCCACACAATTCTACCAAGTTTTAATTGCTTTATTTGTTCTTTTATAAACTTTTATGGCCTAATAATTTTCTTTTTCTTTATTATGACTATATAATAAAGATATCAAACGAAACCTCTTTTTTCCAGTTTTTTTAAAAAATGTCTTTTTTACAAGATTTTTCATGAGTAAATTTGGGCTACATACCAGCCCAAATTTCAATGGGCTGAAATGGGTTGAGCTAATATATGGGTACCCCTAGCGACATGTCATAATTCATATATCGAGATCCCTAGGATTCATATGGTGAAAACACACATCTTGTTTATTTTACTGTGACCACTGACTCAAAATTTTGCTGCTAAGTGAAGATGGAACTTGTTTGGTGTTAACTTTTGTACTTTCTATATGCATGACAGTTTCGTTATATTTTAGGAGTTGAGACTCTCTGTGGATTATCCAGAGGTAGTCCGCTGGAAGTCGTTTACAGTCTATTATCCTGCTTTAGAGACAGCCAGCATTTTATTTATATGTTGTGTGTGAACTGCTCTTTGTGGCATTAATTCTCTTGGCGCAAGTGAAGTTGGGAAAAAGTTGTCCCTGTTCTTTCAGGTGTTCAACTTGTCAAGATCATCAAAGTCAAGTAGTGAAATTTCCTTCCAGATATGCAAATCTTAATATTGGTTATAAGGCACAGTGAAAAGTTTGTGGTGTTATTTGACACAGTAATTTTATTGTTGTCTTTTATGTTTAAATTAAATTAAATTTTTTATTTGAATATGAGCTGTTAGAAGGAGATCACTATACCTTGGTGGTAGAGATGACTGGAGGTTATTAACTTGTCCATGCCGTGGTTGATGAAATTTTGTTCAGATAAATTTCCCCTCTTAGTATTCGGGCTAAAGATTAATAAAGCATCTTTTCAGCTTATATTAGATAGCTATAAGTAATACGAGTTCAATTTGATAATAGTCTTCCCTTTGAAATCCGCGGGTTGTTAGACACTGAATCTACCTTCATATGTCCAAGTGACTCCTAGAACTTTTTCTTTTAACAGGTAGGTGTAACCGTTGCAGCTCGTAAATATGACCTTGACTCTGTTGCACCTTTTCAAGCATCAGATATTATGAATCTCCAACCAGTGGTGAAGCATTCTATCCCAGTTAGTTCAGAAGCTAAGGACCTTGTTGAAACAGGAAAGGCTCAATTAGCTGAGGTATTAACTGTTTCAATTGGTTAAAGAAATGGAGATTCTCATGTTAGTCATGGATATCTTGAGAGGCTAGCTGTCAATTTTTTTTGCCTTCTGTTGTACTCTTTAGTTTGTAACTTACCTTGGTGGAATAATATCCTCATACATTTCAGGGTTTGCTTAGTGAGGCCTACACTTTATTTTCCGAAGCATTCACAATACTTCAGCAGGTATATTACTGATTATTTTTTCTCTGCAATGCTTTGAAGTCTTATATTATTTAAGTTCTGATTCCAATAATTTTAAAAATGCAGGTGACGGGTCCGATGCACCGGGAAGTTGCCAATTGTTGTCGGTGAGTAGTATTGTGCTCTACACGTCACTCTTTTTGTGAGAGAATATGATTGTGCATTGTAGTCTTTGGTTATTGTGTTTTCTGTCTTTTGCTTTCATTGGTTTTTCTGTCTTATCTTTATTCTTTTCTATAATTTTTTTCTCTTTCAGCTACCTTGCTATGGTTCTATATCATGCTGGAGATATGGCTGGTGCTATAATGCAACAGCACAAGGAACTTATCATAAATGAAAGATGCCTTGGACTGGACCATCCTGACACTGCACACAGGCAATTTTCTTGTCTTTGAACTCTTTTTCTTTCTTTTGCTATATGTTGCCTATTAGCTTGCTGGTGTCGATTTGATGCCGGAAACCTGTATTTCCGGATAATTATGTCTAGTAACGTGAGTTTGGTAATGTTGCTGCAGTTATGGAAACATGGCTCTTTTCTATCATGGTCTTAACCAAACAGAACTTGCATTGAGGCATATGTCACGGGCCTTGCTTCTTCTTGGCTTGTCATCAGGTCCTGATCATCCGGATGTTGCCGCAACATTTATAAATGTTGCAATGATGTACCAAGATATTGGGAAGATGGATACAGCACTTCGTTATCTCCAAGAAGCATTGAAAAAGAATGAACGGTTGCTTGGGGAGGAACATATTCAGACTGCTGTTTGTTATCATGCTCTGGCAATTGCGTTCAACTGTATGGGTGCTTTCAAGCTTTCGCACCAGGCATGTACTTTAACTGGACAGTTTACTGTGCTAAGAAAATGATAGTTACTGTTTTAACCATTTTAATTAATTTCTTTTCAACAGCATGAAAAGAAAACTTATGATATACTAGCCAAACAGCTGGGAGAGGAGGATTCAAGGACACGCGATTCTCAGAACTGGATGAAAACATTTAAGATGCGTGAGCTGCAGATGAATGCACAAAAGCAGAAAGGTCAATCTCTGAATGTGGCTTCTGCACAGAAGGCTTATGATATTTTAAAGGTAACTTTTTCGTAACAGTTTTGTACCCTTTATGATCCTTTGAAGGGATCATTAAATAATGTCTTGACATATTTGCTTAACCTAAACCTTCACCTTGAGGCAGAAATGGAAGGCTTGTTCTGGGGGGATTTAGACTTGCTTTTCTAGTTTTCATTACTTTGTCATTGCTGTCTCTCGCACTAGTTGCTTGTTTAATCCTCTTCAGAAGCCTTGCATCAATTACAATATAATGTATAGGGTCTTGGCTATTCCTTTTTCTTGTTTGATGGCCAATTTGGAGTGGATTTTTCATTCTAGGGTTATGGTTCTAGTTGCCTTGGATTTGCTTTACTATGTCAATGAGAAATTGAATGTTCACACTACTGAGTTGAATATTGCAGGCTCATCCAAGCTTGTTACA-CG-CATTTCAAGCTGCCGCTGGAGGTA-CTGGTATTGGTGGAATGAACCAATCATTAAGTTCTGCAGTA-CTTGGTGATGGGCTTCCTCGGGGAAGAGGAGTTGATGAAAGAGCTGCA-CGAG-CTGCTGCTGAAGTA-CGGAAAAAAGCTGCAGCAAGGGGTCTTCTTGTA-CGTCCCAGTGGTGTTCCTGCATCATCTTTACCTCCTCTTACCCAGCTA-CTCAATGTAATAAATTCTGGCA-CAACACCGGATGCTGCAAATCCTAGTGGAACTAATGAAGAAAAGAAAGAAGCAAACAGTAATTCTTCTAATGGATCTGGAGATG</genome_strand>
        <mrna_strand>GGAACTATGAACTTTTCTCATTTATGGGATCTTTGTTGGAACGAGGGTCTTGTCAGATGTGCAAAGCACATCCTCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGCTGAGGGATGCTGAGGACCATGATCTTGCAAACACAATCTCACATTTTTACAACTGTTTGTTTGGAAATATGCAAACAGTATCTAATAAAGGCGGCGCCAACAGTTCTAGAAACCAAAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCACGTTGGGAACCAGCAAAAGTCATCCAAGGGACAGGGAAAGCGAAAAAATGTAGGATCTGCCAAGAAGAAACAGTCCTCCTATTTGAGTATCACGTCTGACAGTTTGTGGTCTGACATCCAAGAATTTGCGAAACTCAAGTATCAG..................................................................................................TTTGAGTTGCCTGACGATGCAAAAATGCTGGTAAAGAAAATTCCAGTTGTACGCAATCTCTGTCAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTGTAACCGTTGCAGCTCGTAAATATGACCTTGACTCTGTTGCACCTTTTCAAGCATCAGATATTATGAATCTCCAACCAGTGGTGAAGCATTCTATCCCAGTTAGTTCAGAAGCTAAGGACCTTGTTGAAACAGGAAAGGCTCAATTAGCTGAG.....................................................................................................................................................GGTTTGCTTAGTGAGGCCTACACTTTATTTTCCGAAGCATTCACAATACTTCAGCAG....................................................................................GTGACGGGTCCGATGCACCGGGAAGTTGCCAATTGTTGTCG.....................................................................................................................................................CTACCTTGCTATGGTTCTATATCATGCTGGAGATATGGCTGGTGCTATAATGCAACAGCACAAGGAACTTATCATAAATGAAAGATGCCTTGGACTGGACCATCCTGACACTGCACACAG...........................................................................................................................................TTATGGAAACATGGCTCTTTTCTATCATGGTCTTAACCAAACAGAACTTGCATTGAGGCATATGTCACGGGCCTTGCTTCTTCTTGGCTTGTCATCAGGTCCTGATCATCCGGATGTTGCCGCAACATTTATAAATGTTGCAATGATGTACCAAGATATTGGGAAGATGGATACAGCACTTCGTTATCTCCAAGAAGCATTGAAAAAGAATGAACGGTTGCTTGGGGAGGAACATATTCAGACTGCTGTTTGTTATCATGCTCTGGCAATTGCGTTCAACTGTATGGGTGCTTTCAAGCTTTCGCACCAG....................................................................................CATGAAAAGAAAACTTATGATATACTAGCCAAACAGCTGGGAGAGGAGGATTCAAGGACACGCGATTCTCAGAACTGGATGAAAACATTTAAGATGCGTGAGCTGCAGATGAATGCACAAAAGCAGAAAGGTCAATCTCTGAATGTGGCTTCTGCACAGAAGGCTTATGATATTTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................GCTCATCCAAGCTTGTTACACCGCCATTTCAAGCTGCCGCTGGAGGTACCTGGTATTGGTGGAATGAACCAATCATTAAGTTCTGCAGTACCTTGGTGATGGGCTTCCTCGGGGAAGAGGAGTTGATGAAAGAACTGCACCGAGCCTGCTGCTGAAGTACCGGAAAAAAGCTGCAGCAAGGGGTCTTCTTGTACCGTCCCAGTGGTGTTCCTGCATCATCTTTACCTCCTCTTACCCAGCTACCTCAATGTAATAAATTCTGGCACCAACACCGGATGCTGCAAATCCTAGTGGAACTAATGAAGAAAAGAAAGAAGCAAACAGTAATTCTTCTAATGGATCTGGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331527" ref_strand="+" ref_description="SGN-U331527        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>ttttttttttttttacagaagaacgctttcattccaacgataaataagtaacaaaacagaaagtctaactttaaccagaaacgataaagtgtccaagaaagagcacctttcaactgaaatgggtgggcagcttcactcacgaggtaatgggaatgaataaaggtcaaaaattttaggatgacatcaacacccaaaacagatgatggacctctctacttaacattattcaaaacaccaaaataatgcatactaaacctatcttctcaaaactaggcctacaagttatgtcatctcagcaataataatcaagatgagaggaactacagctcgaatacttaaatctccatgagacttattgtaagaatggaatagaagtataagcgttcacccgtgcagtgagtacctgaagcatgaggtggctgcaagcgaaaatccatgatatgctagaactggccattgacatgtttgttagtacattccgcaatatacacttcaagatgcagctttcacttttgatttttgcttcttggtatccaacgcccccaaacctgtccctaaaccaacaggagtttgatcttgttcccctgctttggataagtctgcttgggcatctccagatccattagaagaattactgtttgcttctttcttttcttcattagttccactaggatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="98819" stop="97551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98528" g_stop="97851" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="678" r_length="678" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-U331527" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98528" e_stop="97851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTCACCTTAATACAGAAAAACGCTTTCATTCCAACGATAAATAAGTAACAAAACAGAAAGTCTAACTTTAACCAGAAACGATAAAGTGTCCAAGAAAGAGCACCTTTCAACTGAAATGGGTGGGCAGCTTCACTCACGAGGTAATGGGAATGAATAAAGGTCAAAAATTTTAGGATGACATCAACACCCAAAACAGATGATGGACCTCTCTACTTAACATTATTCAAAACACCAAAATAATGCATACTAAACCTATCTTCTCAAAACTAGGCCTACAAGTTATGTCATCTCAGCAATAATAATCAAGATGAGAGGAACTACAGCTCGAATACTTAAATCTCCATGAGACTTATTGTAAGAATGGAATAGAAGTATAAGCGTTCACCCGTGCAGTGAGTACCTGAAGCATGAGGTGGCTGCAAGCGAAAATCCATGATATGCTAGAACTGGCCATTGACATGTTTGTTAGTACATTCCGCAATATACACTTCAAGATGCAGCTTTCACTTTTGATTTTTGCTTCTTGGTATCCAACGCCCCCAAACCTGTCCCTAAACCAACAGGAGTTTGATCTTGTTCCCCTGCTTTGGATAAGTCTGCTTGGGCATCTCCAGATCCATTAGAAGAATTACTGTTTGCTTCTTTCTTTTCTTCATTAGTTCCACTAGGATTTGC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTACAGAAGAACGCTTTCATTCCAACGATAAATAAGTAACAAAACAGAAAGTCTAACTTTAACCAGAAACGATAAAGTGTCCAAGAAAGAGCACCTTTCAACTGAAATGGGTGGGCAGCTTCACTCACGAGGTAATGGGAATGAATAAAGGTCAAAAATTTTAGGATGACATCAACACCCAAAACAGATGATGGACCTCTCTACTTAACATTATTCAAAACACCAAAATAATGCATACTAAACCTATCTTCTCAAAACTAGGCCTACAAGTTATGTCATCTCAGCAATAATAATCAAGATGAGAGGAACTACAGCTCGAATACTTAAATCTCCATGAGACTTATTGTAAGAATGGAATAGAAGTATAAGCGTTCACCCGTGCAGTGAGTACCTGAAGCATGAGGTGGCTGCAAGCGAAAATCCATGATATGCTAGAACTGGCCATTGACATGTTTGTTAGTACATTCCGCAATATACACTTCAAGATGCAGCTTTCACTTTTGATTTTTGCTTCTTGGTATCCAACGCCCCCAAACCTGTCCCTAAACCAACAGGAGTTTGATCTTGTTCCCCTGCTTTGGATAAGTCTGCTTGGGCATCTCCAGATCCATTAGAAGAATTACTGTTTGCTTCTTTCTTTTCTTCATTAGTTCCACTAGGATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327293" ref_strand="+" ref_description="SGN-U327293        Tomato 200607 #1 [4 ESTs aligned]">
      <seq>gtcaattgattgaagagtttgccaaggaggagcaaggggagtatgataaaggggccgcagcaggagcctcgaggtgagggcatggcacagtgcttacaaggtaggttaggggatataggtttgagtcaaaagtgtgtactatgacgtattctttctctcatgagctggggaacttagccagagcaattttggggtttggtcattaccattttatcagtttcctttacattcgagcgaggatttaattgttgcttgatggaggaggggacaggttggttatagtattattattgtgacattgagataatgtagcacttgatctgcaacttagtgttgtatataaatatgatgaaacaaataaatgtttctcaagggaagtggaatgttacctgccattcatcctttttttttgcacttattgaatagaataacagaactggacgattctgaaccgagtagtagactcgattaagctatgtaatatcacttttttagaagagtttgaagcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="102299" stop="101189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101999" g_stop="101489" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-U327293" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101999" e_stop="101489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAATTGATTGAAGAGTTTGCCAAGGAGGAGCAAGGGGAGTATGATAAAGGGGCCGCAGCAGGAGCCTCGAGGTGAGGGCATGGCACAGTGCTTACAAGGTAGGTTAGGGGATATAGGTTTGAGTCAAAAGTGTGTACTATGACGTATTCTTTCTCTCATGAGCTGGGGAACTTAGCCAGAGCAATTTTGGGGTTTGGTCATTACCATTTTATCAGTTTCCTTTACATTCGAGCGAGGATTTAATTGTTGCTTGATGGAGGAGGGGACAGGTTGGTTATAGTATTATTATTGTGACATTGAGATAATGTAGCACTTGATCTGCAACTTAGTGTTGTATATAAATATGATGAAACAAATAAATGTTTCTCAAGGGAAGTGGAATGTTACCTGCCATTCATCCTTTTTTTTTGCACTTATTGAATAGAATAACAGAACTGGACGATTCTGAACCGAGTAGTAGACTCGATTAAGCTATGTAATATCACTTTTTTAGAAGAGTTTGAAGCCTT</genome_strand>
        <mrna_strand>GTCAATTGATTGAAGAGTTTGCCAAGGAGGAGCAAGGGGAGTATGATAAAGGGGCCGCAGCAGGAGCCTCGAGGTGAGGGCATGGCACAGTGCTTACAAGGTAGGTTAGGGGATATAGGTTTGAGTCAAAAGTGTGTACTATGACGTATTCTTTCTCTCATGAGCTGGGGAACTTAGCCAGAGCAATTTTGGGGTTTGGTCATTACCATTTTATCAGTTTCCTTTACATTCGAGCGAGGATTTAATTGTTGCTTGATGGAGGAGGGGACAGGTTGGTTATAGTATTATTATTGTGACATTGAGATAATGTAGCACTTGATCTGCAACTTAGTGTTGTATATAAATATGATGAAACAAATAAATGTTTCTCAAGGGAAGTGGAATGTTACCTGCCATTCATCCTTTTTTTTTGCACTTATTGAATAGAATAACAGAACTGGACGATTCTGAACCGAGTAGTAGACTCGATTAAGCTATGTAATATCACTTTTTTAGAAGAGTTTGAAGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321672" ref_strand="+" ref_description="SGN-U321672        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:9799223-9802280 REVERSE | Aliases: None(evalue: 2e-18, score=89.7) genbank/nr: gi|15231596|ref|NP_189301.1| expressed protein [Arabidopsis thaliana] gi|30688438|ref|NP_850634.1| expressed protein [Arabidopsis thaliana] gi|20260460|gb|AAM13128.1| unknown protein [Arabidopsis thaliana] gi|30387531|gb|AAP31931.1| At3g26670 [Arabidopsis thaliana](evalue: 1e-16, score=89.7)">
      <seq>ttttttttttttgaaaccttttttatagtatttatttactcttgattccgaataaaatagatatcaaatatgaatgtttatctttatcaactaaaactagactatagttgatcagattttatcgaattttaatacaaataacaaatattaaacaggaaagtaaagactgaactgttttttttttttttttttttttttaaggagaaagaaataacaatattgttaagcactactactagaggaaattgaaaaaatgcaaagatgtagcagtacttcatgagttaattagcaacctaaaaacaaaagttcaagctacttttgccaattacaatagaagcttcactgcccaaatgaatttaccaatgtatatacacacaaaaatgcttttatatacactatataatttttcgacgagacagataactgcttgtaccattttcatgtttatcaccacacaccaacgtcctggcgctcgcatagtccaatcatatcagcagttttcatcagcatatctcgtccaaatgatctcgatatccctaatttgatcagatgatatgaacaatctctcaacatcctgcgatgaattcgaagttttgagtactgctaaagaattatccttcaatacttcatcatcttctggtgctagcaaataaatgccaataaacacagaaatcattccaaaaacgaacatggttgttcttaaagcatcaaacaccttgtattcctcaaagtagacaaatccagtacagattgagaaaaacgtccaagcgatttgaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="111841" stop="113212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112133" g_stop="112912" g_length="780"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="780" r_length="780" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-U321672" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112133" e_stop="112912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATGAATTTTGAAACCTTTTTTATAGTATTTATTTACTCTTGATTCCGAATAAAATAGATATCAAATATGAATGTTTATCTTTATCAACTAAAACTAGACTATAGTTGATCAGATTTTATCGAATTTTAATACAAATAACAAATATTAAACAGGAAAGTAAAGACTGAACTGTTTGATATTTTTTTCCATATATATAAGGAGAAAGAAATAACAATATTGTTAAGCACTACTACTAGAGGAAATTGAAAAAATGCAAAGATGTAGCAGTACTTCATGAGTTAATTAGCAACCTAAAAACAAAAGTTCAAGCTACTTTTGCCAATTACAATAGAAGCTTCACTGCCCAAATGAATTTACCAATGTATATACACACAAAAATGCTTTTATATACACTATATAATTTTTCGACGAGACAGATAACTGCTTGTACCATTTTCATGTTTATCACCACACACCAACGTCCTGGCGCTCGCATAGTCCAATCATATCAGCAGTTTTCATCAGCATATCTCGTCCAAATGATCTCGATATCCCTAATTTGATCAGATGATATGAACAATCTCTCAACATCCTGCGATGAATTCGAAGTTTTGAGTACTGCTAAAGAATTATCCTTCAATACTTCATCATCTTCTGGTGCTAGCAAATAAATGCCAATAAACACAGAAATCATTCCAAAAACGAACATGGTTGTTCTTAAAGCATCAAACACCTTGTATTCCTCAAAGTAGACAAATCCAGTACAGATTGAGAAAAACGTCCAAGCGATTTGAAACA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTGAAACCTTTTTTATAGTATTTATTTACTCTTGATTCCGAATAAAATAGATATCAAATATGAATGTTTATCTTTATCAACTAAAACTAGACTATAGTTGATCAGATTTTATCGAATTTTAATACAAATAACAAATATTAAACAGGAAAGTAAAGACTGAACTGTTTTTTTTTTTTTTTTTTTTTTTTAAGGAGAAAGAAATAACAATATTGTTAAGCACTACTACTAGAGGAAATTGAAAAAATGCAAAGATGTAGCAGTACTTCATGAGTTAATTAGCAACCTAAAAACAAAAGTTCAAGCTACTTTTGCCAATTACAATAGAAGCTTCACTGCCCAAATGAATTTACCAATGTATATACACACAAAAATGCTTTTATATACACTATATAATTTTTCGACGAGACAGATAACTGCTTGTACCATTTTCATGTTTATCACCACACACCAACGTCCTGGCGCTCGCATAGTCCAATCATATCAGCAGTTTTCATCAGCATATCTCGTCCAAATGATCTCGATATCCCTAATTTGATCAGATGATATGAACAATCTCTCAACATCCTGCGATGAATTCGAAGTTTTGAGTACTGCTAAAGAATTATCCTTCAATACTTCATCATCTTCTGGTGCTAGCAAATAAATGCCAATAAACACAGAAATCATTCCAAAAACGAACATGGTTGTTCTTAAAGCATCAAACACCTTGTATTCCTCAAAGTAGACAAATCCAGTACAGATTGAGAAAAACGTCCAAGCGATTTGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333021" ref_strand="+" ref_description="SGN-U333021        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:9799223-9802280 REVERSE | Aliases: None(evalue: 2e-53, score=205) genbank/nr: gi|15231596|ref|NP_189301.1| expressed protein [Arabidopsis thaliana] gi|30688438|ref|NP_850634.1| expressed protein [Arabidopsis thaliana] gi|20260460|gb|AAM13128.1| unknown protein [Arabidopsis thaliana] gi|30387531|gb|AAP31931.1| At3g26670 [Arabidopsis thaliana](evalue: 1e-51, score=205)">
      <seq>ttaaatctgcagtccgaagaaatatcataaatagtgttttaaacaacgtgaaactatcttattcacagagaattcgattgaatcaagtttatcgtaatattatattgggcgatctgagtcttctagcatagtggcaaagatgttggctcaaaaattgttttaggtcacaggttttgtatttttttttttgaaaaaaatttccttgttaaaatttctgaatccgcgagtgcgtccatgggggattgggtgattggagcgttgatcaatttgttaggaagcattttcatcaacttcggaacaaatctacttaaattagctcatgatgagagaaatttaagggctaggatgaagcccattatatacttccaagcatggagaattggtattctcttcttcacaataggaaattgtctcaatttcatttcatttggttatgctgctcaatcacttctagcagctttgggatctattcagttcatttcaaacatcggattcgcgtacttggtgttgaacaaaacagtgaaaatcaaattactgttagccactgcttttgttgttgctggaaacattttccttgtagcttttggtaatcatcagtcccctgtttacacaacagagcaattgggtgaaaattacacaaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="114201" stop="112956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113901" g_stop="113256" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-U333021" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113901" e_stop="113256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATCTGCAGTCCGAAGAAATATCATAAATAGTGTTTTAAACAACGTGAAACTATCTTATTCACAGAGAATTCGATTGAATCAAGTTTATCGTAATATTATATTGGGCGATCTGAGTCTTCTAGCATAGTGGCAACAGATGTTGGCTCAAAAATTGTTTTAGGTCACAGGTTTTGTATTTTTTTTTTTGAAAAAAATTTCCTTGTTAAAATTTCTGAATCCGCGAGTGCGTCCATGGGGGATTGGGTGATTGGAGCGTTGATCAATTTGTTAGGAAGCATTTTCATCAACTTCGGAACAAATCTACTTAAATTAGCTCATGATGAGAGAAATTTAAGGGCTAGGATGAAGCCCATTATATACTTCCAAGCATGGAGAATTGGTATTCTCTTCTTCACAATAGGAAATTGTCTCAATTTCATTTCATTTGGTTATGCTGCTCAATCACTTCTAGCAGCTTTGGGATCTATTCAGTTCATTTCAAACATCGGATTCGCGTACTTGGTGTTGAACAAAACAGTGAAAATCAAATTACTGTTAGCCACTGCTTTTGTTGTTGCTGGAAACATTTTCCTTGTAGCTTTTGGTAATCATCAGTCCCCTGTTTACACAACAGAGCAATTGGGTGAAAATTACACAAACATT</genome_strand>
        <mrna_strand>TTAAATCTGCAGTCCGAAGAAATATCATAAATAGTGTTTTAAACAACGTGAAACTATCTTATTCACAGAGAATTCGATTGAATCAAGTTTATCGTAATATTATATTGGGCGATCTGAGTCTTCTAGCATAGTGGCAA-AGATGTTGGCTCAAAAATTGTTTTAGGTCACAGGTTTTGTATTTTTTTTTTTGAAAAAAATTTCCTTGTTAAAATTTCTGAATCCGCGAGTGCGTCCATGGGGGATTGGGTGATTGGAGCGTTGATCAATTTGTTAGGAAGCATTTTCATCAACTTCGGAACAAATCTACTTAAATTAGCTCATGATGAGAGAAATTTAAGGGCTAGGATGAAGCCCATTATATACTTCCAAGCATGGAGAATTGGTATTCTCTTCTTCACAATAGGAAATTGTCTCAATTTCATTTCATTTGGTTATGCTGCTCAATCACTTCTAGCAGCTTTGGGATCTATTCAGTTCATTTCAAACATCGGATTCGCGTACTTGGTGTTGAACAAAACAGTGAAAATCAAATTACTGTTAGCCACTGCTTTTGTTGTTGCTGGAAACATTTTCCTTGTAGCTTTTGGTAATCATCAGTCCCCTGTTTACACAACAGAGCAATTGGGTGAAAATTACACAAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345344" ref_strand="+" ref_description="SGN-U345344        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G48060.1 | Symbol: None | C2 domain-containing protein, contains INTERPRO:IPR000008 C2 domain | chr5:19492522-19496228 FORWARD | Aliases: MDN11.14, MDN11_14 (evalue: 1e-44, score=176) genbank/nr: C2(evalue: 2e-51, score=205)">
      <seq>ttgcttgagacttgagtcttgagatatcttgagaagagttatttgttggtggcgaaaaacaagaacaaaaagggagggagatatgaagttaatagtagaagtaatagatgcttatgatcttatgccaaaagatggtgaaggatcagtaagtgcatttgtagaagttgattttgaaaaccaacttagcaaaactagaactgtcccaaaaaatctcaaccccacttggaaccataaactcattttccatcttgacgatataaagaatcatcgatacaaatacattgatgtttctgtgtatcatgagagaaggcctattccagggagaaactttcttggaagggtgagaattccttgctcaaatatagtcaagaaaggggaagaagtctatcaaagattccaacttgaaaagaaatggttttcctcatttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="118254" stop="119283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118554" g_stop="118983" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-U345344" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118554" e_stop="118983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTTGAGACTTGAGTCTTGAGATATCTTGAGAAGAGTTATTTGTTGGTGGCGAAAAACAAGAACAAAAAGGGAGGGAGATATGAAGTTAATAGTAGAAGTAATAGATGCTTATGATCTTATGCCAAAAGATGGTGAAGGATCAGTAAGTGCATTTGTAGAAGTTGATTTTGAAAACCAACTTAGCAAAACTAGAACTGTCCCAAAAAATCTCAACCCCACTTGGAACCATAAACTCATTTTCCATCTTGACGATATAAAGAATCATCGATACAAATACATTGATGTTTCTGTGTATCATGAGAGAAGGCCTATTCCAGGGAGAAACTTTCTTGGAAGGGTGAGAATTCCTTGCTCAAATATAGTCAAGAAAGGGGAAGAAGTTTATCAAAGATTCCAACTTGAAAAGAAATGGTTTTCCTCATTTGTT</genome_strand>
        <mrna_strand>TTGCTTGAGACTTGAGTCTTGAGATATCTTGAGAAGAGTTATTTGTTGGTGGCGAAAAACAAGAACAAAAAGGGAGGGAGATATGAAGTTAATAGTAGAAGTAATAGATGCTTATGATCTTATGCCAAAAGATGGTGAAGGATCAGTAAGTGCATTTGTAGAAGTTGATTTTGAAAACCAACTTAGCAAAACTAGAACTGTCCCAAAAAATCTCAACCCCACTTGGAACCATAAACTCATTTTCCATCTTGACGATATAAAGAATCATCGATACAAATACATTGATGTTTCTGTGTATCATGAGAGAAGGCCTATTCCAGGGAGAAACTTTCTTGGAAGGGTGAGAATTCCTTGCTCAAATATAGTCAAGAAAGGGGAAGAAGTCTATCAAAGATTCCAACTTGAAAAGAAATGGTTTTCCTCATTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346444" ref_strand="+" ref_description="SGN-U346444        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to DNA-directed RNA polymerase, putative [Arabidopsis thaliana] (TAIR:At5g45140.1); similar to hypothetical protein UM01133.1 [Ustilago maydis 521] (GB:EAK81692.1); similar to unnamed protein product [Debaryomyces hansenii CBS767] (GB:CAG89744.1); similar to SPBP23A10.07 [Schizosaccharomyces pombe] (GB:CAB66435.1); similar to hypothetical protein CaO19.7062 [Candida albicans SC5314] (GB:EAL01509.1); similar to putative DNA-directed RNA polymerase I subunit, 5'-partial [Oryza sativa (japonica cultivar-group)] (GB:AAM92814.1); contains InterPro domain RNA polymerase Rpb2, domain 3 (InterPro:IPR007645); contains InterPro domain RNA polymerase Rpb2, domain 7 (InterPro:IPR007641); contains InterPro domain RNA polymerase beta subunit (InterPro:IPR007644); contains InterPro domain RNA polymerase Rpb2, domain 2 (InterPro:IPR007642); contains InterPro domain RNA polymerase Rpb2, domain 6 (InterPro:IPR007120); contains InterPro domain RNA polymerase, beta subunit (InterPro:IPR007121) | chr1:10479170-10486803 REVERSE | Aliases: F1N18.2(evalue: 6e-64, score=241) genbank/nr: putative(evalue: 5e-62, score=241)">
      <seq>cttaactgacttgtcgaatatttattggacctgtttattatcagcgtctgcgacacatggtttctgataaatttcaggtccgttctactggacaggtagaccatatcactcggcagcctatcaaggggagaaagcgtggtggaggtgtccgctttggtgaaatggaacgagattcactccttgctcatggagcatcatatttgctgcatgatagactccatacaagctcagatcatcacattgcagatgtgtgctctgaatgtggaagtgtcctaacatcatctgttattcagccgccaaaacgagcagtgcaagcaattctgaaacagctacctgctagagaacccaaaaaggttacttgtgtcgcttgtcgttcaagtaaaggaatggagactgttgctatgccttatgtgtttaaatatttagcggctgaactggcagccatgaacatcaagatgaccctcaaactaagtaatgaggctggagcttgatacacatttctggcggttggaatattctaatgtctagatgcaagctgggagcttgattaccatttcatctgtacctgtagcttctcaatgtgcaacatgtccaaaaaggtgtttgcagcatcagataactggattctggcaacagtgatttggctttataatttgaaggccagtttcctagggggctactgagaaacagagtgtgcctgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="123901" stop="122110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123604" g_stop="123528" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123527" i_stop="123036" i_length="492">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123035" g_stop="122410" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="704" r_length="627" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-U346444" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123604" e_stop="123528"/>
          <exon e_start="123035" e_stop="122410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAACTGACTTGTCGAATATTTATTGGACCTGTTTATTATCAGCGTCTGCGACACATGGTTTCTGATAAATTTCAGGTTAGTATCACCTAGATATTAGAGTGAATGATCCTGTCTATTCTTCCTGCCCGCTTTGACCATTTAAGCTGATTTATGTTTTCATCTCGTGTAGCAAACATCGACTGTTTGATGAATAACTGTTTACATAACCACCTCCTGTGCTCAACTCTGATGTGAACTGTTAAGTTTTAAAAATTGGAAGCTAAAACTAGAAAAGAACACAATGTTTGTGCTTATCATTGACTTCCAAATGAAACCAAGATCAAGAAATTCTTCCTCTACCTAGTTTTCCTTCCTGCTTGAATAATTAATTTATTACAGTATTTATCCTATGCATTTTGGGCTGACAGATTTCATGTTAATGGGTCTCTTTTTTCCCATTTAACCCCACCCACCCCCAAAAAGGAAACAGATTCAGTTCGATAATTGAACTTCCAAGTATTACTTTATATATCCTTATTCCTTGTCAGGTTAAATTCGGTACTTAAGTTGGCTTCTATTGCTGTACAGGTCCGTTCTACTGGACAGGTAGACCATATCACTCGGCAGCCTATCAAGGGGAGAAAGCGTGGTGGAGGTGTCCGCTTTGGTGAAATGGAACGAGATTCACTCCTTGCTCATGGAGCATCATATTTGCTGCATGATAGACTCCATACAAGCTCAGATCATCACATTGCAGATGTGTGCTCTGAATGTGGAAGTGTCCTAACATCATCTGTTATTCAGCCGCCAAAACGAGCAGTGCAAGCAATTCTGAAACAGCTACCTGCTAGAGAACCCAAAAAGGTTACTTGTGTCGCTTGTCGTTCAAGTAAAGGAATGGAGACTGTTGCTATGCCTTATGTGTTTAAATATTTAGCGGCTGAACTGGCAGCCATGAACATCAAGATGACCCTCAAACTAAGTAATGAGGCTGGAGCTTGATACACATTTCTGGCGGTTGGAATATTCTAATGTCTAGATGCAAGCTGGGAGCTTGATTACCATTTCATCTGTACCTGTAGTTTCTCAATGTGCAACATGTCCAAAAAGGTGTTTGCAGCATCAGATAACTGGATTCTGGCAACAGTGATTTGGTTTTATAATTTGAAGGCCAGTTTCCTAGTGGGCTACTGAGAAAGAGAGTGTG-CTGCAAA</genome_strand>
        <mrna_strand>CTTAACTGACTTGTCGAATATTTATTGGACCTGTTTATTATCAGCGTCTGCGACACATGGTTTCTGATAAATTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTTCTACTGGACAGGTAGACCATATCACTCGGCAGCCTATCAAGGGGAGAAAGCGTGGTGGAGGTGTCCGCTTTGGTGAAATGGAACGAGATTCACTCCTTGCTCATGGAGCATCATATTTGCTGCATGATAGACTCCATACAAGCTCAGATCATCACATTGCAGATGTGTGCTCTGAATGTGGAAGTGTCCTAACATCATCTGTTATTCAGCCGCCAAAACGAGCAGTGCAAGCAATTCTGAAACAGCTACCTGCTAGAGAACCCAAAAAGGTTACTTGTGTCGCTTGTCGTTCAAGTAAAGGAATGGAGACTGTTGCTATGCCTTATGTGTTTAAATATTTAGCGGCTGAACTGGCAGCCATGAACATCAAGATGACCCTCAAACTAAGTAATGAGGCTGGAGCTTGATACACATTTCTGGCGGTTGGAATATTCTAATGTCTAGATGCAAGCTGGGAGCTTGATTACCATTTCATCTGTACCTGTAGCTTCTCAATGTGCAACATGTCCAAAAAGGTGTTTGCAGCATCAGATAACTGGATTCTGGCAACAGTGATTTGGCTTTATAATTTGAAGGCCAGTTTCCTAGGGGGCTACTGAGAAACAGAGTGTGCCTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339608" ref_strand="+" ref_description="SGN-U339608        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to DNA-directed RNA polymerase, putative [Arabidopsis thaliana] (TAIR:At5g45140.1); similar to hypothetical protein UM01133.1 [Ustilago maydis 521] (GB:EAK81692.1); similar to unnamed protein product [Debaryomyces hansenii CBS767] (GB:CAG89744.1); similar to SPBP23A10.07 [Schizosaccharomyces pombe] (GB:CAB66435.1); similar to hypothetical protein CaO19.7062 [Candida albicans SC5314] (GB:EAL01509.1); similar to putative DNA-directed RNA polymerase I subunit, 5'-partial [Oryza sativa (japonica cultivar-group)] (GB:AAM92814.1); contains InterPro domain RNA polymerase Rpb2, domain 3 (InterPro:IPR007645); contains InterPro domain RNA polymerase Rpb2, domain 7 (InterPro:IPR007641); contains InterPro domain RNA polymerase beta subunit (InterPro:IPR007644); contains InterPro domain RNA polymerase Rpb2, domain 2 (InterPro:IPR007642); contains InterPro domain RNA polymerase Rpb2, domain 6 (InterPro:IPR007120); contains InterPro domain RNA polymerase, beta subunit (InterPro:IPR007121) | chr1:10479170-10486803 REVERSE | Aliases: F1N18.2(evalue: 4e-77, score=284) genbank/nr: NRPA2;(evalue: 3e-75, score=284)">
      <seq>cgagatatacgtcaatttaacatgttgctacaatgaggaatgtgaccgtgtaaagggatctgtcggcacccagcttgttggtgaaagagcaaaaattatcctggatgaagttcaggccctatctctttttacccgagcacagtgcctgcgacatattggggagcatttccaacctgttgtgatcggaatgcaaaatgatagttacaggcatgaggccagatcttattattaatcctcatgctttcccttcaaggatgacaattgctatgctgttggagtcgattgctgctaaggggggtgctttacatgggaagtttgttgatgcaacgccgttctctaacacaatgaaggaatcagaatcggaatccagttcacttgtggatgaccttggttccatgttagcggtttgtggcttcaatcaccatggtacggaagtactatatagtggagtatatgggacagaactgacttgtcgaatatttattggacctgtttattatcagcgtctgcgacacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="134950" stop="123247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134650" g_stop="134493" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134492" i_stop="134409" i_length="84">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134408" g_stop="134367" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="200" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134366" i_stop="130265" i_length="4102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130264" g_stop="130258" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="207" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="130257" i_stop="124092" i_length="6166">
            <donor d_prob="0.771" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124091" g_stop="124006" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="293" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124005" i_stop="123771" i_length="235">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123770" g_stop="123547" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="517" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-U339608" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134650" e_stop="134493"/>
          <exon e_start="134408" e_stop="134367"/>
          <exon e_start="130264" e_stop="130258"/>
          <exon e_start="124091" e_stop="124006"/>
          <exon e_start="123770" e_stop="123547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGATATACGTCAATTTAACATGTTGCTACAATGAGGAATGTGACCGTGTAAAGGGATCTGTCGGCACCCAGCTTGTTGGTGAAAGAGCAAAAATTATCCTGGATGAAGTTCAGGCCCTATCTCTTTTTACCCGAGCACAGTGCCTGCGACATATTGGTACTTGTTTTATTTACTATCATGGTTAACTGTGATCTTATCAAATGACTGTCAACTGCATATGATCAATCTTCCACTTTTCAGGGGAGCATTTCCAACCTGTTGTGATCGGAATGCAAAATGATAGTTACAAAACTGTAAGTGTTATCTTGGTTGTACTTGTCATGATTTAGTTCTAGAAGTCAGAACAGACATATTTTTCTAGAGATGATACCTTTACATCACATTCTCTCTCTCACTTGACAGGTTGCTGATGCTGTGCTTAGAGACTACATATTTGTCCATCTGGATAACAATCATGATAAATTTAATCTACTTATGTTAGTATTTTTTTCTCTGGAAAATTGTCTTGTGATTTTATGGTAACTCTTCCATCTACAGTTGTATGTTTTGGCTATTGATATATTGATACTCCTGCTTTATTTAGCTTTATGTTGCAGAAGCTTTTCTCTCTGATAGATCAGACATCTGTCCTAGACAATCCAGACTCTCTGCAAAATCAAGAAGTTTTGCTGCCGGGTCACTTAATTACCATATATCTGAAGGTCCAAACTTTTAAATTTCCTTTTTAAGGAATAATTGTTATGTGACATTGGATGTGATGCTTATATAGTAAGTGCCTCATAGAAATGTGTATTGTCATTCTTCTTTGGGCTAAAAGAACCTTATATCCAGGATCAATTAAGTGGAGAGTTAAGTGATTACTCAATCAATCAAATACACCTAGTTGGCTATTGCTTTATGAATCATCTGTATCAATCATGCTCTATTCAAGCCCATCACAGTCCAGTATTGAGTACGTTTTTTATGTGGAGTGTTAGGCATGCTCTAAGTGCTTTAGTTGTCTGTGACTTCTTATGGTTGCAGTACATGATATGAATGTATGAATGTTTTCTTTTGGTTTCACAAGGCAAAAAAGAACGGATGATGTTTTTAAGGACAATTGGCCACTCTCGACTGTATTGGGTCCTGTAGTAATCATTTGCACTTCGGTGTTACTTGGGAATATCAAAGAAATGGATGGGTACTTCTAACTTTTGAGCTCCTTGGAGCTATACAGTTAGACGTCACTTCCTTATTAAGTCTTACCTGATTAACAAAGTACTTTAAGGATCTTCTATTGCATTATTAATTAGCAAGAGACTTATTGGGAATATTCTATTCCTGTTTGGCTCATATTGGGTCATGCCTCTACTTACAAGACTGCATTACATCATGGTCTAGTTTGAAGATGGGAAAGAAGATACCGAATTCTGTTCACGAGTCCCAAATTTAATGCTTCTTGTATCTTATTTATAAAGAAGGGGATCTGAAAATTGGTACAGTTCATGAACTTCTTAAATTTCCACTTGATTTGTTTTTTGATCCTTTCACACTTTCTACGTTGATTTTTACTTTGCTTCTTCTTCCATTCCACTTTCTTGGTGCTTTTATTCCCACTATTCATTCGCTTTTAGCAGAAAAACATGAGGATTGATTGTTTCATTCGCTGGACATTCATGAAATCAGTTGCAGAAGCTTATGACTTGAAATGTCTTAACTTGTTCAAGTTCTTTTTACTTTTATATGCTCAAAAAGTAATATTATTTAATTATGAATATGATAATCTGATTGTGTATGTTAAATATATCTATAAAATAGTTTAATATAGTTGTCACCTTAATCTTTCAATATGTTGTTTTTTGAATTTGAGTTGTGATATATACCATGTAGTAGCTGACAGTTTCTGATAAATCTAGTTGATTTTATGTTATAATTCGTAAAGCGAGGAAGAAAGTGCTTATTAAGCAGAATCACAGAGAGGCTACCTCGAACAGAATAATACATTATTTTTCAATAGACGAAGGGCCTCTTTATCGAGTATTCCTACATATTGCATGTTCCTATTCAATTCACTTACCATTGTTATAATGGAAGTTGGAAAGGTTGTAAAAAAGCTTTCTTTGGCATGCGATGGACTGGGCAAAGAAATTCCACCCTGTTCATTGGCAAACTGGGACAACTCGTAAACAGTGTGGAGGGCTTGGGGTTAAAAACGTGAAGTTTTAAATTTACGTTATGACTGTGTGGAGATTTGGAGTGGAAGGAGAAGCTTTGTGGAGAGGGTTGATGGTGTACAAATTTAGAGTAATGGAGGGGGATGGAGGACCGATGTGATTACTATGCCTTTCGGCTATGGTGTGTTGAGAATAGAGTTAGTTTTGGGGGCTAAAATGGTCAAGGATGAGTTCCTGGTATTGTCTAGAGCTTCTTGCCAATGGGAATTGTCTGTTCAGCAAGCTAGGCGACACGAGGGGATGAAACTTTTTGGGATCGTTCATCAGCAATTTCCAGGATTGGGAGGTGATCGAGCTTTAGCGATTTCTTGCTTTACTTCACATACAATGCCAATCAATTGACAGACTCGATGCTTTAAGTTGGGAAATAACAGAGTGTTCTATGTCAGTCCTTCTATGAGAAGCGTCTGATTAGGGCAGAGGATAGTTTCCCATATCAATCAGTCTTGATATCTAAAGTGCCGAGGAAGGTGTGCTTCTTCACGTGGAATAGAGGGGCGATACTTACAGCGAAGACTCTTAGGGAGTGAGAAAGGCTGATTGCCAAAGCTGGTGTATCTTGTGTAAGGAGGTAGGTGATGACATGGATCATATGCTATTGCACTACCAAATAGCCACGAGGTTATGGTGGGATATATTTAGTTGGTTTGGAGTTTCTTGGACTATGCCAAAATCCATGTTGGAGTTAATGTTTAGATGGAAGAGTGGAACTAGGAGAAGAGCCACAAAGCTTGGCATGTTACTACTCTTGCTTCTTTTAATTTTAGATCATTTGGAAAGAGAAAGTATGTGAGCTTTTGAAGGGGTGGAGATGAGCTTTGATTAATTGAGGAGTAGTCTCCTATATTTTTTTTTGTTGCACCTATATAGTTCCTGTTTGCATAGAGAATTGAGTGTCTTCGGGAGAGAACCACATTTGTAGATCTCTCCTTTTTGGTGTACCTCTTGTATACAGCCATATGACCTTGTTATTGTTGTTGAAATCTTTTACTTGGATTTAAAATAAAATAAAATATATCAAGCGACCTTCTAATTCTGTTATCAAACACATCTAATGTCTTTCTCACCTGATATATTCAATTTTATATGTTTAGTTTTGTTATCAAGCAGCCTTTACAGCTCTACACCATTAATGAATTAGAAGGCCTGTTTTATCCATATGAGATTGCTATCTGCTTGGTTTTTGCACTGTTTTGTCTTGACGTTCTCTATCACCTCACCAGGAAAAGCTACAAGATTGGCTACTTAAATTACAACGGTCACTTCAAGAAGAAACTGATGGTGAAAAAAAGAAGTTTGAGCTAAGTAGCTGTATGTTCTATCAACCTATTTCATCTATCTTAGTCTGTACTACTTTCATAGATAGCTGTTCGTGGCTATGCTACGCCATTGTATGGTGTGGGCGCCACCCACAACATTTGACTGGTTGTGGTCGCACTAGTAAGAAGTAATTAATGTTCTGTTCCAAACCAATTTGTTTCTGGTAGTGAGATTTTCAGTTACCCTCGTCACGTTTTAATTTATCTCTCAGGAAATCTTCCTTTGTCCTATACTGTTTGCTAGTTAGAGTCACAGGGGCATAAGAGATCTACTTAGAGCCTGTTTGGATTGACTTTCGACTTGTAAGCCACAAGTAAGCCAGAAGTCATAAGTTAGAAATTCTAACTTATGGTTTTTGTCTTATTTTAATCATTTTAGCTTAAACTGTAAGCACTTCTTTACCCAAACACTCCAAAAGTGCTTAAAATTTATTTTGGCTTAAAAACACTTAAAATAAGTCAATCCAAGCAGGCTCTATGAAGCTCCAAGTTTACATGCTTTTCTGTTAGTTTAATGGTGCTGATAGATGTACTAAAGTTCAGAAGATTTGGGCTTTCACTTTCTTTTTCTTTTAATCAACTCAGTTTTTACATAGATCAAATCCGGGCATATTGGATTCTAGAACTTGATTCAAATTTTGAGTAGACTTCATCTGTTTTTATGACATATTGCAGTGACAGACGTCAAGAAGGCTATTGAAAAAAATGCTCCCAAACAGATTGGCTTGACTATTGAGAGCATGTTGAAGACTGGGAGATTGGCTACACAATCAGGTCTTGATTTGCAGCAGGTATTTAGTTGTCAAGCTTTTATGCGAAGCACCACTGACTCTTTTTTTTTTTTTGGACAAGGTAACAGGCAAGCACCGATAACTCTTTATTGAAAAACAACTGTGAATCCCAGTAACTAGGAAATTTATATTGTAACAGATGTGTCTTCGTTCCCGTCTTTCTCTTGTTCTTTGTCAAATTTCAAACTTCTTTATCTTATGAAAGGAAAACTAAATTTGCATTCTCTATTTTATCTGATAACCACCATAGGATGTCATATAGGAAGAAGGTTCTCAAGGAGGGAAAGCTAATTACCATTACCAGTTTTTTTAAAAAAGGGAAGAAAAAGGCAAACTAAACTGACATAAAATGGACAAAAATTCAATTGATTACTTCTGAAAACTGTCATCTTCTGCCCCAAAGTTAACATACATACAGTGTTGGATTGAAATACTTGACAAAAAATAATACTCAAGTGCATTATTGAAGAAGCTCTGCACCAAGTAGATTGGAGTACCATTTCCTCCAGGACTCTGGTCAGTGGCAAGAGCACAGTTGATTAGGTGATGAGTTTGAACCATGCCACAAACAAATCCTTGTATTTAAGTGGAGAAGGGTAGAGGGCGGGCTCATTGTACACGGAGTTTCAACCATGCATCATTAACACTATGGATTTCTCGGTTATGAAAATGGAAGGTAGATTGGAGTACCATAGTGAGCAAGAAGAATGTGTGCTTAAAGATATTCGATTTCTAGTGGTTTTCTATTTGTCTTTGTAAATCTTTACCCAACAGCTTATAATCACTTTATGCTATTGGTGCAGTTTGGAGTATGTAGATGATCCTATAGTTGTTAGAGATATCCTAGGTCCTTTGTAAGATGAAGTAGGATCTAGTTTAGTTTTTGTTTTAACTACACACAACTGTATGTAGCTCCATGGTGTAAATTTGGGACCCCAGCCTTTAGTGCTGAAGATTAATACACAAAACTGTTACCTTTGTCCAAAAAAAAACACACACACTGTATTCTAATTGCACCAAATAATAATTAGTACAAGTGTGCAAACAGATTCACTGCGAATGTGCGATTCAGGGCTAAACAATTTTTGGCAGTGAATCAAAATCGGTTCGTAATGCAACCTCCACACGTGAAGCTATTCAAGAGGAAAGCCCTGCACCTCAATTTCTTGTCCATGGCTCATAGTTAGACTGAGATGAAGGCCCTCTCTGTGAGTCTGTTATTCATGTTGTAGTTCAAATGATTGACAACAGAGGAGTTTGATAGGATTCTCTTCTTTTCTCGAGGGTTATTGGCATAGGACAGAATAAAAAGTAACAACTTGCAGGTGTTTCTGAAACATCGAGTAGGTTCTCTTTTTTTTTTTATGGGGGCATGGGGGTGGGGGAGTGTGAAGGTGGGTACAACAACAACATACCCAATGTAATCCCGCAAGTGAGATTCGAGATGGTTAGACTGTACGCAGACCTACACCTACCTTTTGGAGGTAGTGAGTATAAAAGTGAGTGACTACATAAAATACATAGATGGATAGCAGCTTTCCGTTGGATAATCTAATTAACTGTAAGAGATATTTAACTCCATTTTCAATTGCTTCTGCTAGTACCTCTAGTTGAGCAGGTTCTTCCCGTTTTAGAGGAAGTGAATTGTTGTAATTAATGATGGTTGTTACGAAAAAAGTTGTATGAATAATATAATTATTGTTGCAGAAGATAGCACAGTTCTTACAGAATGGAGGTTAATTTTAGCTTCTCTGATATTAGACTTATTTACATTATTTTATGGAAAGTGGACCTCTGGAATCATCTACTCATGAGTATCTTGACTTGGTTGTTTTTTGGTTAGAGAGCTGGAATGACTGTCCAGGCAGAAAAGTTAAATTTCCTCCGTTTTCTTTCACATTTTCGAGCGGTTCATCGAGGTGCCTCATTTGCTGGTCTTCGTACTACAAGTGTGCGGAAGTTGTTACCTGAGTATGTTGTCTTTTTATCTGAGCTAATTGCTTTATTTTCATAAAAAAATCACTTGAGGTTCCATTCATATTTTCCTGGTCCACCATTTTTCAGATCTTGGGGTTTCCTTTGTCCTGTTCACACACCTGATGGGGAGCCATGTGGGTTGCTTAATCATATGACTGCATCTTGCCGTAAGTTACATTTTTTTTCCTTTTTGGTAATATCAGTTGTATACACCAACCTAAATTTGTGGATGTAATCTTGTTTATACTCTTATTTTCCTTAGCCTTTATCTGTTATGGGATGTCGCTTTTGCTCCCATTGTCCAAGAAACATTTTTTTTCTTGGCCAGTTTGAGAAGTGACAGACTGACAGTGTTCCTCATGTTCTGCATTCACTAGAAATTTTCTTCTTATCATATTTATTCTGCCATAGGTGAAATTCAGTCACCATTTTTTGGCAAGAGTTTATACAAGCTGGTACTTTCAGGGGTGAAGTTAACCTTAATATCACAAACGTTTATATATTGCTACATTCATTGCTCCAATAGCCTATTATTTGCTGCACATATCTCTGACTCCCTGCATCATATTCACATCACTGATTAAACAACTCATATCACACAGGAAATATGAGGTCCTGTACTATTTGTGGTTCACATTGTGTCTTTGTTATTTATTAGTCAAATATTGAATTTTTGCACTAATTGCATTCATATTTATGTTTGTAAGTCCTAATCCTATTGCCGTTGATTAGTTTTGTTCACTTCATTTATAATACACAGTACAATATTAGCTCCCTTCACTTTAATACAATCATTCTGTTACCAGGCATAACCTCATACTATGATTCAAAGGGCAATGTTAAAGACTTCTTCAAAATGCGGATGTCCATATTGAATGTGCTGATTGCAATTGGAATGACACCATCATCACCAAAGCTTGTGCAAGCTGGTCCTCCTGAATTGCTGTCTGTCCTACTGGATGGTCGTATTGCGGGCTATATACCGTCGGATTTAATTGAAAAGGCTGTTACCCACTTGCGGAGATTGAAATTGTCATCAACATCATCGGTTTGTTTCTGATCGACTTTTTTTAGCCAAAGATCTTTTGTATAGCGACTTATTATGCACCTACTTCACAGTAGATTCCAGTTGATTTGGAGGTTGGATACATCCCTTTGAGCATGAATGGAGCATATCCAGGCCTATATCTGTTCACATCTCCTTCTAGGTTTGTTCGTCCTGTAAGAAACATCTCTGCGCCTGCTGAAGAGGGCAATGATCTTGAACTCATTGGACCCTTTGAACAGGTGGGTTCTGCATTTCTTGATTTTTCCTTTTATTAATTTTCATCTTCTTTATCAACAAACATGAACTTGATGAGCTTTTTTACTAATGAGAACCTCCAATATAATGATTGCTAGGTTGTGTATTTGTAATGTGCAGGTGTATATGGAGATAAGCTGCCCGGATGGTGGAGATGGAGGAAGGAAAACCTTATTCCCTGCCACACATCGAGAAATTCATCCAACTAATATTTTGAGTGTTGTTGGCAATCTTACACCTTGGTCTGATCATAATCAGAGTCCACGTAATATGTATCAATGTCAGGTGAAGTGTTAAATTTGAAATAATCTCTGGATAATGTTATATAGACTGCTGAGGCTCAATGCATTATTGTATCTCATGTTTCATCTATTGTGCAGATGGGTAAACAAACAATGGGTTTCTCCTCACAAGCATTAAATTGTCGTGCTGATCAAAAGTTATATCACCTTCAGGTTTGTCCTGGTTATTATTTGCAATTCAATTCGTTCATGAGTTAGTTGTTGCCAGCCCCCAAGTTGAGTTCAATGGCATCCTATTTTAAATAGTTTTTAAAGTGTGTTGATTCATATTGAGAATTTGGTGCTTGGGCCAAGCACATCTGTGTAGTTTTTCTGGTGGAGGCAGAAAGACAAGAGATGTATGGGATTAGTTAAAGGGATTGAAACATACTGTTTCCGTACAGTAGTTTACAGTGAATAGAAGAATGATGAAAGCATGAATGGATTATGGTGTTGTAGCTATGCTATGTATTATGTTATATTTGAAATTGATGCTCATGTTCTTGCTGTTTCAGTGACCAAGGATGTTTGCTACAGTGAGCTGATTTTTTTTTTATGTGTTATGCATCTTGGTATTATTTATTTTTATCTTGTAAAAATGTGTAGCAAGCAAGCATTCAGCTGAAAGATTCTCTGGGACAGTGGGTAAGGTGGATCATCTTTGAATAGGATAGTTTTATGAGACTATCAGTCAGAACATGTGTAACATATTCAATAGAACATTTCTTTATGGTGTTGTTTTTGCTGTTGTGTTGGATTACCTGTGTGTATATCTAGTTCCACGTGCTACTGGTTCACATTTTTTTAATTTCATTTCCTTGTAACAGCTGTAATTATTCAGACTTAAGAACTTATGTTGCTAATTTTTTTGCTTTTGAGATTTTATTTTCTCTTGTCTGATCTTTTCTTTTTCTTCGGGAAATTGGATCTTTACAGACTCCTCAAACCCCAATTGTACGCACAAAAGCTTATGAGAAGTATTGTGTTGATGACTATCCATTAGGAACAAATGCAATTGTGGCAGTTTTGGCTTATTCAGGGTAAGAGTTCTGTACGTGCCTTGTTTGATTTTTTATCAGCGGAAACATAAAATACATACCTTCATGTTATGCAGATATGACATGGAAGACGCTATGGTCTTAAATAAATCATCTGTAGATCGTGGTATGTGTCATGGGCATATATACCAGGTATCATTTGACATTTTAAAAAGCTTTTTGGACTTCGTTTTTTTGATACAGAAACAACTTTTTTGTTCAACCCCCCACCCCCCAAGGGAATACAAATACATCTATCGGACTATGATATTTTCCTTTTTACACTACATTAATGGAGTTTTAAGTTATTGTACCAATGATTTGTCTACGATAAGTTTTCAGAAGGATGATTCTCATCAACTCAAACCTTCTTTGAGACCACACACAACACCATGAACTTTGATGCTTGATGGTCTTTTTGTTTCTCTTCTTTAGTTGGAGGGTCGAAGAATGAAAACCAGATCTATCTCTGTTCTTTTTCCTATTTTAGGTGTTTAGATTCTTATATAATTGATCCCTCCCTTGCTAAACTACTTATCCTACTTTTCTTTGTGGAGGTAGTTTTCTGATCTTTCACGTTGACGTCTTTATTGACCAATATATGATCTTCTGATTTGCAGACAGAAACCATTGACTTGACTGAGCAAAGCGCCAAATCTGATCGTGCTCAGAGATTGTTTAGAAGAAGCAATTTGGATAAGTCGTCTCATCAGCTGATTGATTCTGATGGTCTTCCATACGTGGGACAGGTAACGGAATATTTTTTTTCCTATTTTTTTGGTGAGTCAAGTTGCACCTGAACCAACATGATCATTTGGTTGCAGAGGATTAATCCAAATGAGCCATATTGTAGTATTTACAATGAAATAACCAGTCAGACAACTTGTATGAAGTTGAAGGGTTCGGAGCCTGTTGTTGTTGATTATGTTGCTGTCGATGTGAAAAATAAAGCACATCTGCAGAAGGTGAGCAATTCCTCGATATATTTGACTATTAAAAGATACATCTCTGTTCTTTTACTGGGTTTCTAATTCACTTTGCTGTTGTTATCCTCTTTGTTGAGGATATATTAGTTGGTGTAGTTCTTTCATCTTTTGCTTTCTATTTCTCTTGAACTCAATGTCAACTTTTATTTAGCATAGATGACTGAGTATCATTGCCTGACTTCGTATCATTGCCTGGTCAATATATCTCTTTATTTCATTGAATCAAGGTAAGTTGATGTTTTCTTGGGTATTCATGTTCTTCAGGGGGTTTTGGTACTATTTACTGTCTTTTCTGTCTTCTAAAGTATTGGATGCTTCCTTTGATGCTGCACTTGTAGATTTATTGTGCTTATCAAATGTTGCAACTATCGTTACTTATCATTTTATTTTTTTTTGTCGTTGTAATAACAAAAATTTTGGTAGTTCGTGATGGAAAATCCTCTCTTAGCTACAAATTTACTCTGGTGTTCATGACCTTGAAAAACTTCAAATTTATCAACTTATTTGCATTTGTTTTGGGCAGGCGAATATACGTTTTAGGCGCTCCAGGAATCCTGTAATTGGTGATAAATTTAGCAGCCGACATGGGCAAAAGGGTGTTTGCTCTCAATTATGGCCTGATGTTGATATGCCCTTCTCAGCAGTTACAGGCATGAGGCCAGATCTTATTATTAATCCTCATGCTTTCCCTTCAAGGATGACAATTGCTATGCTGTTGGAGTCGATTGCTGCTAAGGTCTGTTTTCTCTTCTGCCGCGTATGGTGTTATTTATTTTAAGCAAAAGTATTTTGGTTAAGAGATTGTAGCTCTCCAGACAATAATATATTCAAGTAGTTTTTGTGGTAGTTTATATTTGTTTATTGGGTGATGGCTTCATATGCTGAAGATATCTCTCGCTTATGGAATCTATGGTTCATCTAGCTTGACATGGATGATCACAAGAATTTATATATATGCTATCTTCGAGCAGGGGGGTGCTTTACATGGGAAGTTTGTTGATGCAACGCCGTTCTCTAACACAATGAAGGAATCAGAATCGGAATCCAGTTCACTTGTGGATGACCTTGGTTCCATGTTAGCGGTTTGTGGCTTCAATCACCATGGTACGGAAGTACTATATAGTGGAGTATATGGGACAGAACTGACTTGTCGAATATTTATTGGACCTGTTTATTATCAGCGTCTGCGACACAT</genome_strand>
        <mrna_strand>CGAGATATACGTCAATTTAACATGTTGCTACAATGAGGAATGTGACCGTGTAAAGGGATCTGTCGGCACCCAGCTTGTTGGTGAAAGAGCAAAAATTATCCTGGATGAAGTTCAGGCCCTATCTCTTTTTACCCGAGCACAGTGCCTGCGACATATTG....................................................................................GGGAGCATTTCCAACCTGTTGTGATCGGAATGCAAAATGATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGAGGCCAGATCTTATTATTAATCCTCATGCTTTCCCTTCAAGGATGACAATTGCTATGCTGTTGGAGTCGATTGCTGCTAAG...........................................................................................................................................................................................................................................GGGGGTGCTTTACATGGGAAGTTTGTTGATGCAACGCCGTTCTCTAACACAATGAAGGAATCAGAATCGGAATCCAGTTCACTTGTGGATGACCTTGGTTCCATGTTAGCGGTTTGTGGCTTCAATCACCATGGTACGGAAGTACTATATAGTGGAGTATATGGGACAGAACTGACTTGTCGAATATTTATTGGACCTGTTTATTATCAGCGTCTGCGACACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339609" ref_strand="+" ref_description="SGN-U339609        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to DNA-directed RNA polymerase, putative [Arabidopsis thaliana] (TAIR:At5g45140.1); similar to hypothetical protein UM01133.1 [Ustilago maydis 521] (GB:EAK81692.1); similar to unnamed protein product [Debaryomyces hansenii CBS767] (GB:CAG89744.1); similar to SPBP23A10.07 [Schizosaccharomyces pombe] (GB:CAB66435.1); similar to hypothetical protein CaO19.7062 [Candida albicans SC5314] (GB:EAL01509.1); similar to putative DNA-directed RNA polymerase I subunit, 5'-partial [Oryza sativa (japonica cultivar-group)] (GB:AAM92814.1); contains InterPro domain RNA polymerase Rpb2, domain 3 (InterPro:IPR007645); contains InterPro domain RNA polymerase Rpb2, domain 7 (InterPro:IPR007641); contains InterPro domain RNA polymerase beta subunit (InterPro:IPR007644); contains InterPro domain RNA polymerase Rpb2, domain 2 (InterPro:IPR007642); contains InterPro domain RNA polymerase Rpb2, domain 6 (InterPro:IPR007120); contains InterPro domain RNA polymerase, beta subunit (InterPro:IPR007121) | chr1:10479170-10486803 REVERSE | Aliases: F1N18.2(evalue: 1e-99, score=359) genbank/nr: NRPA2;(evalue: 9e-98, score=359)">
      <seq>gaagatcaatctgcagtctcacttaaattgtattatctaaacaatggaagtgcaagacttggattctggatacaaggaagggaatacttgcttcctgttggtatcatcttaaaggcccttgttgacaccactgatcacgagatatacgtcaatttaacatgttgctacaatgaggaatgtgaccgtgtaaagggatctgtcggcacccagcttgttggtgaaagagcaaaaattatcctggatgaagttcaggccctatctctttttacccgagcacagtgcctgcgacatattggggagcatttccaacctgttgtgatcggaatgcaaaatgatagttacaaaactgttgctgatgctgtgcttagagactacatatttgtccatctggataacaatcatgataaatttaatctacttatctttatgttgcagaagcttttctctctgatagatcagacatctgtcctagacaatccagactctctgcaaaatcaagaagttttgctgccgggtcacttaattaccatatatctgaaggaaaagctacaagattggctacttaaattacaacggtcacttcaagaagaaactgatggtgaaaaaaagaagtttgagctaagtagcttgacagacgtcaagaaggctattgaaaaaaatgctcccaaacagattggcttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="136799" stop="130087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136499" g_stop="136432" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136431" i_stop="136353" i_length="79">
            <donor d_prob="0.605" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136352" g_stop="136307" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="114" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136306" i_stop="134674" i_length="1633">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134673" g_stop="134493" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="295" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="134492" i_stop="134409" i_length="84">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134408" g_stop="134356" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="348" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134355" i_stop="134247" i_length="109">
            <donor d_prob="0.810" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="134246" g_stop="134173" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="422" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="134172" i_stop="134066" i_length="107">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="134065" g_stop="133948" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="540" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="133947" i_stop="131213" i_length="2735">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="131212" g_stop="131125" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="628" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="131124" i_stop="130442" i_length="683">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="130441" g_stop="130387" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="683" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-U339609" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136499" e_stop="136432"/>
          <exon e_start="136352" e_stop="136307"/>
          <exon e_start="134673" e_stop="134493"/>
          <exon e_start="134408" e_stop="134356"/>
          <exon e_start="134246" e_stop="134173"/>
          <exon e_start="134065" e_stop="133948"/>
          <exon e_start="131212" e_stop="131125"/>
          <exon e_start="130441" e_stop="130387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATCAATCTGCAGTCTCACTTAAATTGTATTATCTAAACAATGGAAGTGCAAGACTTGGATTCTGGTGAGGAACTAAAACTTAGCATGATTGAATTGTCTTCTTGTATGATGTCTGAGACATGCTTCTTGCTATCTGCTTGCAGGATACAAGGAAGGGAATACTTGCTTCCTGTTGGTATCATCTTAAAGGTAATCTGGCATTCTCTAGTCTTGTTAGATTGTCTTCGAGAGACTAGAATGTTTTGATTTATTGCAATATGTGAAACTTGCAATCAAATTTTACATTAAAAAGCTAAGAATTACATTTATAACTATTCTTTCAAGTAATGGAGAAGTATCTAGTAATCTTGAATTTCTGTTCATGGCAATTTGCCGAGTATGATATGGCATTGTGGTGATCTTGTTCGAGATAAACTGGCTGGCATAGGAAATACAAACAAGGCTCTGCCAGTTGGGGATTCTCTTTTTACATTTCTCCAGGACCCCATTCATATGCCTTTGGATTTGCTTTTAGCTCCCAAAGGCATGCCTAGATAAGTAGTTGGAAGGTCCCCAACCTTTCCACCTAGTTTGCTGGCCAAGCTTTCTAACAAGCACATTGTTGATGAGATAGATGAGGCTTTTCCCCCACTTTATGTGGAAATCAGGGATGGCTTCAAAAATGACAAAAATAATCCTCAGTTTCGGGGTTTGTTCTGCCTATGCTTCGCAGAACACCAATGTATCATCTTCATATTGCAGATGAGTTATCTCCATATTACATAATTCTCCTGCTTGTGGAACCCTTTGATCCACCCTCTTTCCCTTGCTGTATTAATTAGGTTGTTCATCCCTTCCTTTGCTAAGATGAACAAAAGGGGGGAGAGAGGGTCCCCTTGCCTCGGGCCTCTCTGAGAAAAGAAGAATCCAATAGTTTCTCTATTGACAAGTATAGAGAACTTAATAGAGCCAATACAGTGCTTCATCCATCTATCCGCAGAACCCGTTCTTTCCGGAATCTGGGTAAGAAAGTCATAAGCTTTCTGTACATATCCAACTTGCATGTGATTCCTCGCTTTTAGTTCCTCTATTTGGCCTCTATGCATTAATTGGCTATCAAAACAACATCCATGATCCGCCTTCCCTTGATAAATTCCATCTGCTGTCTATTCACTAGGCTATGTATCACCCTCTTGAGTTTTCTGCTAGAAGCTTTGCACTGATCTTGTACACCCTCAATATGGCTAATGGGTTTGAAGTCTTTTAATTCCTCAGCACCGACCTTCTTTGGGATCAAAGCTACAAAGGTTGCATTCAGACACTTATCGAAGTATCTTCATGGAAGTTCTGAATTGCTTCAACTAAGTCGCAGGTGATGATATCCTAACTTTGTTTGGGGTCTCCACACCTGTGTTTCCACAATAGGTTCTCATAAAGACCACTATTTCCTTTCTGATCTCTTCTGGATCCTACTTTATTACCTCCCCTACTTTCAGCCTGTCTATTGTGTTAGCTCTCCTATGTGCATTTGCAGTTCTGTGGATATAAAGAATCATGCATAGTATTGGAAGCGCGTTCGTTTTGAGATGGGAACAAATCAGGTTTGCCGAACCAGAGTTTTCTCGGGTAAAGAGAAGTAATTAAATATAGATTGAGGATAAGAAAAACAGTATTAAAAGATTTCTTACTGCATTTTATCTGTCCCCCGGGTTGATCTTGCTGCATCGCATGTAGTTTTAACACAAGTTTTTCCTTCGAAATCCACATTTGTTTGCATAATAATTTGATCCAGCTATGCTTGTTCATTCTGCTAGATTTCTTACTGCATTTTATCTTTCCCCAGGCCCTTGTTGACACCACTGATCACGAGATATACGTCAATTTAACATGTTGCTACAATGAGGAATGTGACCGTGTAAAGGGATCTGTCGGCACCCAGCTTGTTGGTGAAAGAGCAAAAATTATCCTGGATGAAGTTCAGGCCCTATCTCTTTTTACCCGAGCACAGTGCCTGCGACATATTGGTACTTGTTTTATTTACTATCATGGTTAACTGTGATCTTATCAAATGACTGTCAACTGCATATGATCAATCTTCCACTTTTCAGGGGAGCATTTCCAACCTGTTGTGATCGGAATGCAAAATGATAGTTACAAAACTGTAAGTGTTATCTTGGTTGTACTTGTCATGATTTAGTTCTAGAAGTCAGAACAGACATATTTTTCTAGAGATGATACCTTTACATCACATTCTCTCTCTCACTTGACAGGTTGCTGATGCTGTGCTTAGAGACTACATATTTGTCCATCTGGATAACAATCATGATAAATTTAATCTACTTATGTTAGTATTTTTTTCTCTGGAAAATTGTCTTGTGATTTTATGGTAACTCTTCCATCTACAGTTGTATGTTTTGGCTATTGATATATTGATACTCCTGCTTTATTTAGCTTTATGTTGCAGAAGCTTTTCTCTCTGATAGATCAGACATCTGTCCTAGACAATCCAGACTCTCTGCAAAATCAAGAAGTTTTGCTGCCGGGTCACTTAATTACCATATATCTGAAGGTCCAAACTTTTAAATTTCCTTTTTAAGGAATAATTGTTATGTGACATTGGATGTGATGCTTATATAGTAAGTGCCTCATAGAAATGTGTATTGTCATTCTTCTTTGGGCTAAAAGAACCTTATATCCAGGATCAATTAAGTGGAGAGTTAAGTGATTACTCAATCAATCAAATACACCTAGTTGGCTATTGCTTTATGAATCATCTGTATCAATCATGCTCTATTCAAGCCCATCACAGTCCAGTATTGAGTACGTTTTTTATGTGGAGTGTTAGGCATGCTCTAAGTGCTTTAGTTGTCTGTGACTTCTTATGGTTGCAGTACATGATATGAATGTATGAATGTTTTCTTTTGGTTTCACAAGGCAAAAAAGAACGGATGATGTTTTTAAGGACAATTGGCCACTCTCGACTGTATTGGGTCCTGTAGTAATCATTTGCACTTCGGTGTTACTTGGGAATATCAAAGAAATGGATGGGTACTTCTAACTTTTGAGCTCCTTGGAGCTATACAGTTAGACGTCACTTCCTTATTAAGTCTTACCTGATTAACAAAGTACTTTAAGGATCTTCTATTGCATTATTAATTAGCAAGAGACTTATTGGGAATATTCTATTCCTGTTTGGCTCATATTGGGTCATGCCTCTACTTACAAGACTGCATTACATCATGGTCTAGTTTGAAGATGGGAAAGAAGATACCGAATTCTGTTCACGAGTCCCAAATTTAATGCTTCTTGTATCTTATTTATAAAGAAGGGGATCTGAAAATTGGTACAGTTCATGAACTTCTTAAATTTCCACTTGATTTGTTTTTTGATCCTTTCACACTTTCTACGTTGATTTTTACTTTGCTTCTTCTTCCATTCCACTTTCTTGGTGCTTTTATTCCCACTATTCATTCGCTTTTAGCAGAAAAACATGAGGATTGATTGTTTCATTCGCTGGACATTCATGAAATCAGTTGCAGAAGCTTATGACTTGAAATGTCTTAACTTGTTCAAGTTCTTTTTACTTTTATATGCTCAAAAAGTAATATTATTTAATTATGAATATGATAATCTGATTGTGTATGTTAAATATATCTATAAAATAGTTTAATATAGTTGTCACCTTAATCTTTCAATATGTTGTTTTTTGAATTTGAGTTGTGATATATACCATGTAGTAGCTGACAGTTTCTGATAAATCTAGTTGATTTTATGTTATAATTCGTAAAGCGAGGAAGAAAGTGCTTATTAAGCAGAATCACAGAGAGGCTACCTCGAACAGAATAATACATTATTTTTCAATAGACGAAGGGCCTCTTTATCGAGTATTCCTACATATTGCATGTTCCTATTCAATTCACTTACCATTGTTATAATGGAAGTTGGAAAGGTTGTAAAAAAGCTTTCTTTGGCATGCGATGGACTGGGCAAAGAAATTCCACCCTGTTCATTGGCAAACTGGGACAACTCGTAAACAGTGTGGAGGGCTTGGGGTTAAAAACGTGAAGTTTTAAATTTACGTTATGACTGTGTGGAGATTTGGAGTGGAAGGAGAAGCTTTGTGGAGAGGGTTGATGGTGTACAAATTTAGAGTAATGGAGGGGGATGGAGGACCGATGTGATTACTATGCCTTTCGGCTATGGTGTGTTGAGAATAGAGTTAGTTTTGGGGGCTAAAATGGTCAAGGATGAGTTCCTGGTATTGTCTAGAGCTTCTTGCCAATGGGAATTGTCTGTTCAGCAAGCTAGGCGACACGAGGGGATGAAACTTTTTGGGATCGTTCATCAGCAATTTCCAGGATTGGGAGGTGATCGAGCTTTAGCGATTTCTTGCTTTACTTCACATACAATGCCAATCAATTGACAGACTCGATGCTTTAAGTTGGGAAATAACAGAGTGTTCTATGTCAGTCCTTCTATGAGAAGCGTCTGATTAGGGCAGAGGATAGTTTCCCATATCAATCAGTCTTGATATCTAAAGTGCCGAGGAAGGTGTGCTTCTTCACGTGGAATAGAGGGGCGATACTTACAGCGAAGACTCTTAGGGAGTGAGAAAGGCTGATTGCCAAAGCTGGTGTATCTTGTGTAAGGAGGTAGGTGATGACATGGATCATATGCTATTGCACTACCAAATAGCCACGAGGTTATGGTGGGATATATTTAGTTGGTTTGGAGTTTCTTGGACTATGCCAAAATCCATGTTGGAGTTAATGTTTAGATGGAAGAGTGGAACTAGGAGAAGAGCCACAAAGCTTGGCATGTTACTACTCTTGCTTCTTTTAATTTTAGATCATTTGGAAAGAGAAAGTATGTGAGCTTTTGAAGGGGTGGAGATGAGCTTTGATTAATTGAGGAGTAGTCTCCTATATTTTTTTTTGTTGCACCTATATAGTTCCTGTTTGCATAGAGAATTGAGTGTCTTCGGGAGAGAACCACATTTGTAGATCTCTCCTTTTTGGTGTACCTCTTGTATACAGCCATATGACCTTGTTATTGTTGTTGAAATCTTTTACTTGGATTTAAAATAAAATAAAATATATCAAGCGACCTTCTAATTCTGTTATCAAACACATCTAATGTCTTTCTCACCTGATATATTCAATTTTATATGTTTAGTTTTGTTATCAAGCAGCCTTTACAGCTCTACACCATTAATGAATTAGAAGGCCTGTTTTATCCATATGAGATTGCTATCTGCTTGGTTTTTGCACTGTTTTGTCTTGACGTTCTCTATCACCTCACCAGGAAAAGCTACAAGATTGGCTACTTAAATTACAACGGTCACTTCAAGAAGAAACTGATGGTGAAAAAAAGAAGTTTGAGCTAAGTAGCTGTATGTTCTATCAACCTATTTCATCTATCTTAGTCTGTACTACTTTCATAGATAGCTGTTCGTGGCTATGCTACGCCATTGTATGGTGTGGGCGCCACCCACAACATTTGACTGGTTGTGGTCGCACTAGTAAGAAGTAATTAATGTTCTGTTCCAAACCAATTTGTTTCTGGTAGTGAGATTTTCAGTTACCCTCGTCACGTTTTAATTTATCTCTCAGGAAATCTTCCTTTGTCCTATACTGTTTGCTAGTTAGAGTCACAGGGGCATAAGAGATCTACTTAGAGCCTGTTTGGATTGACTTTCGACTTGTAAGCCACAAGTAAGCCAGAAGTCATAAGTTAGAAATTCTAACTTATGGTTTTTGTCTTATTTTAATCATTTTAGCTTAAACTGTAAGCACTTCTTTACCCAAACACTCCAAAAGTGCTTAAAATTTATTTTGGCTTAAAAACACTTAAAATAAGTCAATCCAAGCAGGCTCTATGAAGCTCCAAGTTTACATGCTTTTCTGTTAGTTTAATGGTGCTGATAGATGTACTAAAGTTCAGAAGATTTGGGCTTTCACTTTCTTTTTCTTTTAATCAACTCAGTTTTTACATAGATCAAATCCGGGCATATTGGATTCTAGAACTTGATTCAAATTTTGAGTAGACTTCATCTGTTTTTATGACATATTGCAGTGACAGACGTCAAGAAGGCTATTGAAAAAAATGCTCCCAAACAGATTGGCTTGAC</genome_strand>
        <mrna_strand>GAAGATCAATCTGCAGTCTCACTTAAATTGTATTATCTAAACAATGGAAGTGCAAGACTTGGATTCTG...............................................................................GATACAAGGAAGGGAATACTTGCTTCCTGTTGGTATCATCTTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTGTTGACACCACTGATCACGAGATATACGTCAATTTAACATGTTGCTACAATGAGGAATGTGACCGTGTAAAGGGATCTGTCGGCACCCAGCTTGTTGGTGAAAGAGCAAAAATTATCCTGGATGAAGTTCAGGCCCTATCTCTTTTTACCCGAGCACAGTGCCTGCGACATATTG....................................................................................GGGAGCATTTCCAACCTGTTGTGATCGGAATGCAAAATGATAGTTACAAAACT.............................................................................................................GTTGCTGATGCTGTGCTTAGAGACTACATATTTGTCCATCTGGATAACAATCATGATAAATTTAATCTACTTAT...........................................................................................................CTTTATGTTGCAGAAGCTTTTCTCTCTGATAGATCAGACATCTGTCCTAGACAATCCAGACTCTCTGCAAAATCAAGAAGTTTTGCTGCCGGGTCACTTAATTACCATATATCTGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGCTACAAGATTGGCTACTTAAATTACAACGGTCACTTCAAGAAGAAACTGATGGTGAAAAAAAGAAGTTTGAGCTAAGTAGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGACGTCAAGAAGGCTATTGAAAAAAATGCTCCCAAACAGATTGGCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>34</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="52" PGL_stop="963"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52" e_stop="131"/>
            <exon e_start="258" e_stop="323"/>
            <exon e_start="421" e_stop="489"/>
            <exon e_start="596" e_stop="963"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="0.950"/>
          <exon-intron don_prob="0.992" acc_prob="0.818" e_score="0.985"/>
          <exon-intron don_prob="0.987" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="52" e_stop="131" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="132" i_stop="257" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="258" e_stop="323" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.818">
            <gDNA_intron_boundary i_start="324" i_stop="420" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="421" e_stop="489" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.979">
            <gDNA_intron_boundary i_start="490" i_stop="595" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="596" e_stop="963" e_length="368"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52" stop="131"/>
              <exon start="258" stop="323"/>
              <exon start="421" stop="489"/>
              <exon start="596" stop="963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316032" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTTCCAACAAGATTCAGTGCCTTGCAAAATACGTGCTAAACGAGGCTGTGCTACGCACCCACGAAGTATTGCAGAAAGG : ATGAGACGTACTCGGATTAGTGAAAGAATGAAAAAACTGCAAGATCTTTTCCCAAATATGGACAAG : CAAACAAACACAGCTGATATGTTAGATTTGGCAGTTGATTACATTAAAGACCTTCAGAAACAAGTCCAG : ACACTGACCGATAAAAAGGCGAAATGCTCGTGTACAAGTAAGCAGCTGCAATATTCAAATGGAACAACATGAAATAGTCTTGTGTACAGATAGTAATAGGTGAAGTTAGATGGAAAAGGAGAGTAAATAAACTCTCTTTCTACCCTAATATGCTGGAAATATGGTTCTACTTTGTTTTTATTTTGCAACAAGGCAAGTGTAGTTTTCAATGTATTATTGAGTTTGATTAGATCTAATAACAGTCTAGTGAGTACAATCTAGATGTATAGGAGCACATGATTATTGTATTATGCTGTTGTTTATTGGAATTTAACTATGTTATTAGTTGATTCAAAACTTTATAAGACAAATAATATCGATTGGAAAGA</gDNA_template>
            <first_frame> S  S  N  K  I  Q  C  L  A  K  Y  V  L  N  E  A  V  L  R  T  H  E  V  L  Q  K  G :   *  D  V  L  G  L  V  K  E  *  K  N  C  K  I  F  S  Q  I  W  T  S :   K  Q  T  Q  L  I  C  *  I  W  Q  L  I  T  L  K  T  F  R  N  K  S  R :   H  *  P  I  K  R  R  N  A  R  V  Q  V  S  S  C  N  I  Q  M  E  Q  H  E  I  V  L  C  T  D  S  N  R  *  S  *  M  E  K  E  S  K  *  T  L  F  L  P  *  Y  A  G  N  M  V  L  L  C  F  Y  F  A  T  R  Q  V  *  F  S  M  Y  Y  *  V  *  L  D  L  I  T  V  *  *  V  Q  S  R  C  I  G  A  H  D  Y  C  I  M  L  L  F  I  G  I  *  L  C  Y  *  L  I  Q  N  F  I  R  Q  I  I  S  I  G  K  </first_frame>
            <second_frame>  V  P  T  R  F  S  A  L  Q  N  T  C  *  T  R  L  C  Y  A  P  T  K  Y  C  R  K   : D  E  T  Y  S  D  *  *  K  N  E  K  T  A  R  S  F  P  K  Y  G  Q   : A  N  K  H  S  *  Y  V  R  F  G  S  *  L  H  *  R  P  S  E  T  S  P   : D  T  D  R  *  K  G  E  M  L  V  Y  K  *  A  A  A  I  F  K  W  N  N  M  K  *  S  C  V  Q  I  V  I  G  E  V  R  W  K  R  R  V  N  K  L  S  F  Y  P  N  M  L  E  I  W  F  Y  F  V  F  I  L  Q  Q  G  K  C  S  F  Q  C  I  I  E  F  D  *  I  *  *  Q  S  S  E  Y  N  L  D  V  *  E  H  M  I  I  V  L  C  C  C  L  L  E  F  N  Y  V  I  S  *  F  K  T  L  *  D  K  *  Y  R  L  E  R </second_frame>
            <third_frame>   F  Q  Q  D  S  V  P  C  K  I  R  A  K  R  G  C  A  T  H  P  R  S  I  A  E  R  :  M  R  R  T  R  I  S  E  R  M  K  K  L  Q  D  L  F  P  N  M  D  K  :  Q  T  N  T  A  D  M  L  D  L  A  V  D  Y  I  K  D  L  Q  K  Q  V  Q  :  T  L  T  D  K  K  A  K  C  S  C  T  S  K  Q  L  Q  Y  S  N  G  T  T  *  N  S  L  V  Y  R  *  *  *  V  K  L  D  G  K  G  E  *  I  N  S  L  S  T  L  I  C  W  K  Y  G  S  T  L  F  L  F  C  N  K  A  S  V  V  F  N  V  L  L  S  L  I  R  S  N  N  S  L  V  S  T  I  *  M  Y  R  S  T  *  L  L  Y  Y  A  V  V  Y  W  N  L  T  M  L  L  V  D  S  K  L  Y  K  T  N  N  I  D  W  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54" stop="131"/>
                    <exon start="258" stop="323"/>
                    <exon start="421" stop="489"/>
                    <exon start="596" stop="667"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQQDSVPCKIRAKRGCATHPRSIAERMRRTRISERMKKLQDLFPNMDKQTNTADMLDLAVDYIKDLQKQVQTLTDKKAKCSCTSKQLQYSNGTT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="983" PGL_stop="618"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="983" e_stop="618"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="983" e_stop="618" e_length="366"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="983" stop="618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335446" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTGTGATTTTGGAATTACTCTTTCCAATCGATATTATTTGTCTTATAAAGTTTTGAATCAACTAATAACATAGTTAAATTCCAATAAACAACAGCATAATACAATAATCATGTGCTCCTATACATCTAGATTGTACTCACTAGACTGTTATTAGATCTAATCAAACTCAATAATACATTGAAAACTACACTTGCCTTGTTGCAAAATAAAAACAAAGTAGAACCATATTTCCAGCATATTAGGGTAGAAAGAGAGTTTATTTACTCTCCTTTTCCATCTAACTTCACCTATTACTATCTGTACACAAGACTATTTCATGTTGTTCCATTTGAATATTGCAGCTGCTTACTTGTACACGAGCATT</gDNA_template>
            <first_frame> D  C  D  F  G  I  T  L  S  N  R  Y  Y  L  S  Y  K  V  L  N  Q  L  I  T  *  L  N  S  N  K  Q  Q  H  N  T  I  I  M  C  S  Y  T  S  R  L  Y  S  L  D  C  Y  *  I  *  S  N  S  I  I  H  *  K  L  H  L  P  C  C  K  I  K  T  K  *  N  H  I  S  S  I  L  G  *  K  E  S  L  F  T  L  L  F  H  L  T  S  P  I  T  I  C  T  Q  D  Y  F  M  L  F  H  L  N  I  A  A  A  Y  L  Y  T  S  I </first_frame>
            <second_frame>  I  V  I  L  E  L  L  F  P  I  D  I  I  C  L  I  K  F  *  I  N  *  *  H  S  *  I  P  I  N  N  S  I  I  Q  *  S  C  A  P  I  H  L  D  C  T  H  *  T  V  I  R  S  N  Q  T  Q  *  Y  I  E  N  Y  T  C  L  V  A  K  *  K  Q  S  R  T  I  F  P  A  Y  *  G  R  K  R  V  Y  L  L  S  F  S  I  *  L  H  L  L  L  S  V  H  K  T  I  S  C  C  S  I  *  I  L  Q  L  L  T  C  T  R  A   </second_frame>
            <third_frame>   L  *  F  W  N  Y  S  F  Q  S  I  L  F  V  L  *  S  F  E  S  T  N  N  I  V  K  F  Q  *  T  T  A  *  Y  N  N  H  V  L  L  Y  I  *  I  V  L  T  R  L  L  L  D  L  I  K  L  N  N  T  L  K  T  T  L  A  L  L  Q  N  K  N  K  V  E  P  Y  F  Q  H  I  R  V  E  R  E  F  I  Y  S  P  F  P  S  N  F  T  Y  Y  Y  L  Y  T  R  L  F  H  V  V  P  F  E  Y  C  S  C  L  L  V  H  E  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="852" stop="619"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVLTRLLLDLIKLNNTLKTTLALLQNKNKVEPYFQHIRVEREFIYSPFPSNFTYYYLYTRLFHVVPFEYCSCLLVHEH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="4146" PGL_stop="4657"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4146" e_stop="4657"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="4146" e_stop="4657" e_length="512"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4146" stop="4657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339313" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCAACAACAACACTTAGACAAATTACATATCCGCAATAACAAGCTCAATATTGATCAATCGCAAGTTCCGCAGAAAGGCAATCAGAAGATCAGCAAAATACGATACCAAGTTCACTAATGATAAGTATGTGCAATGCAATGGAAAGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACACGAACCTCGATAATAGTAACCATCGCGGCGCGCGATACGTCCCTTGAAATATAGTATCCATCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTCTTTCTCAATGCACATAACACTTGTCACAACCAATGCCTCAGCATAATGCAGATGAGAAGTTCACACAAGTAATGAGGAGATGACCATTTTCATAACATCGCACAGTTCACAACCACACAAACATGAAGTTACATCAACAATGA</gDNA_template>
            <first_frame> L  N  N  N  T  *  T  N  Y  I  S  A  I  T  S  S  I  L  I  N  R  K  F  R  R  K  A  I  R  R  S  A  K  Y  D  T  K  F  T  N  D  K  Y  V  Q  C  N  G  K  Q  C  Q  V  *  *  C  M  S  D  L  V  I  H  T  R  C  L  S  V  R  D  P  W  G  T  Y  L  S  M  H  L  S  R  R  T  T  R  T  S  I  I  V  T  I  A  A  R  D  T  S  L  E  I  *  Y  P  S  A  R  D  T  S  L  E  M  V  H  P  L  K  Y  P  F  F  L  N  A  H  N  T  C  H  N  Q  C  L  S  I  M  Q  M  R  S  S  H  K  *  *  G  D  D  H  F  H  N  I  A  Q  F  T  T  T  Q  T  *  S  Y  I  N  N   </first_frame>
            <second_frame>  S  T  T  T  L  R  Q  I  T  Y  P  Q  *  Q  A  Q  Y  *  S  I  A  S  S  A  E  R  Q  S  E  D  Q  Q  N  T  I  P  S  S  L  M  I  S  M  C  N  A  M  E  S  N  V  K  Y  N  D  A  C  L  T  *  *  Y  T  P  A  V  S  Q  S  G  T  H  G  G  H  I  C  P  C  I  C  R  G  A  R  H  E  P  R  *  *  *  P  S  R  R  A  I  R  P  L  K  Y  S  I  H  R  R  A  I  R  P  S  K  W  Y  I  L  L  S  T  H  S  F  S  M  H  I  T  L  V  T  T  N  A  S  A  *  C  R  *  E  V  H  T  S  N  E  E  M  T  I  F  I  T  S  H  S  S  Q  P  H  K  H  E  V  T  S  T  M  </second_frame>
            <third_frame>   Q  Q  Q  H  L  D  K  L  H  I  R  N  N  K  L  N  I  D  Q  S  Q  V  P  Q  K  G  N  Q  K  I  S  K  I  R  Y  Q  V  H  *  *  *  V  C  A  M  Q  W  K  A  M  S  S  I  M  M  H  V  *  P  S  D  T  H  P  L  S  L  S  P  G  P  M  G  D  I  S  V  H  A  S  V  A  A  H  D  T  N  L  D  N  S  N  H  R  G  A  R  Y  V  P  *  N  I  V  S  I  G  A  R  Y  V  P  R  N  G  T  S  S  *  V  P  I  L  S  Q  C  T  *  H  L  S  Q  P  M  P  Q  H  N  A  D  E  K  F  T  Q  V  M  R  R  *  P  F  S  *  H  R  T  V  H  N  H  T  N  M  K  L  H  Q  Q  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0323C14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="19317" PGL_stop="10666"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19317" e_stop="19107"/>
            <exon e_start="15472" e_stop="15351"/>
            <exon e_start="11100" e_stop="10666"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.405" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19317" e_stop="19107" e_length="211"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.405">
            <gDNA_intron_boundary i_start="19106" i_stop="15473" i_length="3634"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15472" e_stop="15351" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="15350" i_stop="11101" i_length="4250"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="11100" e_stop="10666" e_length="435"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19317" stop="19107"/>
              <exon start="15472" stop="15351"/>
              <exon start="11100" stop="10666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329883" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCACGCCCACCCAACCCCGATCCACCCCTGATCGGCGCCCATCCCACCCATTCCGACCGGCGCTGCATAGATCAGCAGCAGCAGGAGGTCGCGCCACCTTCCCCGACCGGAGCTCCGTGCGCCTCGATCAGCAGCAGCAGCAGCAGGAGGAGGAGGTCGCAGCATCACCGCAGAGGCGGCAGCAGCAACAGCAAATTCCGGCAGATTAG : TGATTTAGCTTCAGCCGGAAATTGATCTTCAATGTCAGGAGAAGTTCAGATGAGTTCAGAAAAGCAACCACGAAGAGGACTGTCATGCACCCGTTACTTCGATGCACTCTGGTTCTGCTACT : GAAATTTTAGAAACACGCGAGAAAGCGAAGCCTCACCTGTGGTCAACACGAACCCCTGAAGAAGCCGCAGCTTATTGGAGCGAACTCTTTGACCATCTAGATGAAGAGTAAAACTCTTAAGACCTTTTCATCAGACATTTGCTCAATCAATACGAGAAAGTTTATTATATCATTTGAAATAATCTTCTCCCCAATGATGCTTGTTTCAAACATGTCTTAGAGGCACCATGGTTATCAAAGTGGGTTTCTAAAGAGGCACCAGTTTAGGAATGTTTAGAATAGGAACATTGTGTAGGAAAATCTTCTTTTTCCTTGAGTGATTGAAGCAGCATAAACAAATTCCAACAATCTTAAACGTCAGAGTAACACCACCTTCTGATTCAGATGAACTGTGGAGCTTATCATTGCATTATAAAGAGATGGAACAAAACACTA</gDNA_template>
            <first_frame> S  H  A  H  P  T  P  I  H  P  *  S  A  P  I  P  P  I  P  T  G  A  A  *  I  S  S  S  R  R  S  R  H  L  P  R  P  E  L  R  A  P  R  S  A  A  A  A  A  G  G  G  G  R  S  I  T  A  E  A  A  A  A  T  A  N  S  G  R  L   : V  I  *  L  Q  P  E  I  D  L  Q  C  Q  E  K  F  R  *  V  Q  K  S  N  H  E  E  D  C  H  A  P  V  T  S  M  H  S  G  S  A  T  :  E  I  L  E  T  R  E  K  A  K  P  H  L  W  S  T  R  T  P  E  E  A  A  A  Y  W  S  E  L  F  D  H  L  D  E  E  *  N  S  *  D  L  F  I  R  H  L  L  N  Q  Y  E  K  V  Y  Y  I  I  *  N  N  L  L  P  N  D  A  C  F  K  H  V  L  E  A  P  W  L  S  K  W  V  S  K  E  A  P  V  *  E  C  L  E  *  E  H  C  V  G  K  S  S  F  S  L  S  D  *  S  S  I  N  K  F  Q  Q  S  *  T  S  E  *  H  H  L  L  I  Q  M  N  C  G  A  Y  H  C  I  I  K  R  W  N  K  T  L </first_frame>
            <second_frame>  L  T  P  T  Q  P  R  S  T  P  D  R  R  P  S  H  P  F  R  P  A  L  H  R  S  A  A  A  G  G  R  A  T  F  P  D  R  S  S  V  R  L  D  Q  Q  Q  Q  Q  Q  E  E  E  V  A  A  S  P  Q  R  R  Q  Q  Q  Q  Q  I  P  A  D  *  :  *  F  S  F  S  R  K  L  I  F  N  V  R  R  S  S  D  E  F  R  K  A  T  T  K  R  T  V  M  H  P  L  L  R  C  T  L  V  L  L  L :   K  F  *  K  H  A  R  K  R  S  L  T  C  G  Q  H  E  P  L  K  K  P  Q  L  I  G  A  N  S  L  T  I  *  M  K  S  K  T  L  K  T  F  S  S  D  I  C  S  I  N  T  R  K  F  I  I  S  F  E  I  I  F  S  P  M  M  L  V  S  N  M  S  *  R  H  H  G  Y  Q  S  G  F  L  K  R  H  Q  F  R  N  V  *  N  R  N  I  V  *  E  N  L  L  F  P  *  V  I  E  A  A  *  T  N  S  N  N  L  K  R  Q  S  N  T  T  F  *  F  R  *  T  V  E  L  I  I  A  L  *  R  D  G  T  K  H   </second_frame>
            <third_frame>   S  R  P  P  N  P  D  P  P  L  I  G  A  H  P  T  H  S  D  R  R  C  I  D  Q  Q  Q  Q  E  V  A  P  P  S  P  T  G  A  P  C  A  S  I  S  S  S  S  S  R  R  R  R  S  Q  H  H  R  R  G  G  S  S  N  S  K  F  R  Q  I  S :   D  L  A  S  A  G  N  *  S  S  M  S  G  E  V  Q  M  S  S  E  K  Q  P  R  R  G  L  S  C  T  R  Y  F  D  A  L  W  F  C  Y   : *  N  F  R  N  T  R  E  S  E  A  S  P  V  V  N  T  N  P  *  R  S  R  S  L  L  E  R  T  L  *  P  S  R  *  R  V  K  L  L  R  P  F  H  Q  T  F  A  Q  S  I  R  E  S  L  L  Y  H  L  K  *  S  S  P  Q  *  C  L  F  Q  T  C  L  R  G  T  M  V  I  K  V  G  F  *  R  G  T  S  L  G  M  F  R  I  G  T  L  C  R  K  I  F  F  F  L  E  *  L  K  Q  H  K  Q  I  P  T  I  L  N  V  R  V  T  P  P  S  D  S  D  E  L  W  S  L  S  L  H  Y  K  E  M  E  Q  N  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19315" stop="19107"/>
                    <exon start="15472" stop="15448"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRPPNPDPPLIGAHPTHSDRRCIDQQQQEVAPPSPTGAPCASISSSSSRRRRSQHHRRGGSSNSKFRQISDLASAGN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19316" stop="19107"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTPTQPRSTPDRRPSHPFRPALHRSAAAGGRATFPDRSSVRLDQQQQQQEEEVAASPQRRQQQQQIPAD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="22428" PGL_stop="27102"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22428" e_stop="22926"/>
            <exon e_start="26407" e_stop="27102"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22428" e_stop="22926" e_length="499"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="22927" i_stop="26406" i_length="3480"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="26407" e_stop="27102" e_length="696"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22428" stop="22926"/>
              <exon start="26407" stop="27102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326535" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCCTTCCCTCCAACCTGACAACCAACAAATACCCGAATCTCTTATGTAACACTTTTTTCAACAATTGATTGATCATTTGCTCAGTCAAAATCAATATAAATCCTTTCCATTATCTTCCCCATTAAACCCTAACCCTATACTCCGATTGTTCTCTGAACGGGAAAAAGATCAACCCAAGTTTATGAATTAAGCACTACGAAGTTCGAGAACCCGATCTTTCTTCAATTTGATCGATCGGGTTATAGTTTTTTTTTTTTGTTTACAAAGATGTCGAAATTGTATGGAGGGGATTTCAATCAGAAAATAGATTATGTGTTCAAGGCGGTGCTGATCGGAGATTCTGCAGTTGGAAAATCGCAGTTATTGGCAAGATTTTCGAGGAATGAGTTTAGTCTTGATTCAAAGGCGACCATCGGTGTTGAGTTCCAGACGAGGACGTTAGAAATCGATAATAAGACTATTAAGGCTCAGATTTGGGATACTGCTGGTCAGGAGAG : ATATAGGGCAGTGACAAGTGCGTACTACCGAGGTGCTGTTGGAGCAATGCTAGTCTATGACATTACCAAACGTCAATCTTTTGATCATATCGCCAGGTGGTTGGAGGAACTGCGGGGCCATGCTGATAAAAACATTGTCATCATGCTTGTAGGCAACAAGACTGACTTGGGTAGTCTTCGTGCTGTACCTACTGAGGATGCGAAAGAGTTTGCTGAGAAAGAGAACTTGTTCTTTATTGAAACATCGGCCCTAGAATCAACAAATGTGGATACAGCTTTTGTTAATGTCTTGACGGAGATATATAGGGTTGTCAGCAAGAAATCCCTTGTTGCCAATGAGGCAGAATCCGCCGCTGGGAGTTCAGCTCTCCTCAGGGGAAAGGAAATTGTTGTTCCTGGCCAAGGACCTGTACCAAGTGGGAGCTCATACAGCTGTTGCAGATCATAGTAGGAGTCAATCGAAGTGGTTCTCAAAGTTGTATAGGTTTTTACATGTATCAGATTTCAATGCTATGCACGTCTATCAAATGCAAATCTGAGTGCTACTACAACTACATGATGCTACATTGGTATTCATCCACTTTCCTCTCTCTAATTTGCGCTTTCGTCATTTGTGTAAAAAAGAATCACAGTTCAAAACCATTAAATTTCAATCTTGGTCTTATGCTAAATGTGCACTTGACCGTCCCAAAAAGA</gDNA_template>
            <first_frame> V  P  S  L  Q  P  D  N  Q  Q  I  P  E  S  L  M  *  H  F  F  Q  Q  L  I  D  H  L  L  S  Q  N  Q  Y  K  S  F  P  L  S  S  P  L  N  P  N  P  I  L  R  L  F  S  E  R  E  K  D  Q  P  K  F  M  N  *  A  L  R  S  S  R  T  R  S  F  F  N  L  I  D  R  V  I  V  F  F  F  C  L  Q  R  C  R  N  C  M  E  G  I  S  I  R  K  *  I  M  C  S  R  R  C  *  S  E  I  L  Q  L  E  N  R  S  Y  W  Q  D  F  R  G  M  S  L  V  L  I  Q  R  R  P  S  V  L  S  S  R  R  G  R  *  K  S  I  I  R  L  L  R  L  R  F  G  I  L  L  V  R  R   : D  I  G  Q  *  Q  V  R  T  T  E  V  L  L  E  Q  C  *  S  M  T  L  P  N  V  N  L  L  I  I  S  P  G  G  W  R  N  C  G  A  M  L  I  K  T  L  S  S  C  L  *  A  T  R  L  T  W  V  V  F  V  L  Y  L  L  R  M  R  K  S  L  L  R  K  R  T  C  S  L  L  K  H  R  P  *  N  Q  Q  M  W  I  Q  L  L  L  M  S  *  R  R  Y  I  G  L  S  A  R  N  P  L  L  P  M  R  Q  N  P  P  L  G  V  Q  L  S  S  G  E  R  K  L  L  F  L  A  K  D  L  Y  Q  V  G  A  H  T  A  V  A  D  H  S  R  S  Q  S  K  W  F  S  K  L  Y  R  F  L  H  V  S  D  F  N  A  M  H  V  Y  Q  M  Q  I  *  V  L  L  Q  L  H  D  A  T  L  V  F  I  H  F  P  L  S  N  L  R  F  R  H  L  C  K  K  E  S  Q  F  K  T  I  K  F  Q  S  W  S  Y  A  K  C  A  L  D  R  P  K  K  </first_frame>
            <second_frame>  F  L  P  S  N  L  T  T  N  K  Y  P  N  L  L  C  N  T  F  F  N  N  *  L  I  I  C  S  V  K  I  N  I  N  P  F  H  Y  L  P  H  *  T  L  T  L  Y  S  D  C  S  L  N  G  K  K  I  N  P  S  L  *  I  K  H  Y  E  V  R  E  P  D  L  S  S  I  *  S  I  G  L  *  F  F  F  F  V  Y  K  D  V  E  I  V  W  R  G  F  Q  S  E  N  R  L  C  V  Q  G  G  A  D  R  R  F  C  S  W  K  I  A  V  I  G  K  I  F  E  E  *  V  *  S  *  F  K  G  D  H  R  C  *  V  P  D  E  D  V  R  N  R  *  *  D  Y  *  G  S  D  L  G  Y  C  W  S  G  E  :  I  *  G  S  D  K  C  V  L  P  R  C  C  W  S  N  A  S  L  *  H  Y  Q  T  S  I  F  *  S  Y  R  Q  V  V  G  G  T  A  G  P  C  *  *  K  H  C  H  H  A  C  R  Q  Q  D  *  L  G  *  S  S  C  C  T  Y  *  G  C  E  R  V  C  *  E  R  E  L  V  L  Y  *  N  I  G  P  R  I  N  K  C  G  Y  S  F  C  *  C  L  D  G  D  I  *  G  C  Q  Q  E  I  P  C  C  Q  *  G  R  I  R  R  W  E  F  S  S  P  Q  G  K  G  N  C  C  S  W  P  R  T  C  T  K  W  E  L  I  Q  L  L  Q  I  I  V  G  V  N  R  S  G  S  Q  S  C  I  G  F  Y  M  Y  Q  I  S  M  L  C  T  S  I  K  C  K  S  E  C  Y  Y  N  Y  M  M  L  H  W  Y  S  S  T  F  L  S  L  I  C  A  F  V  I  C  V  K  K  N  H  S  S  K  P  L  N  F  N  L  G  L  M  L  N  V  H  L  T  V  P  K  R </second_frame>
            <third_frame>   S  F  P  P  T  *  Q  P  T  N  T  R  I  S  Y  V  T  L  F  S  T  I  D  *  S  F  A  Q  S  K  S  I  *  I  L  S  I  I  F  P  I  K  P  *  P  Y  T  P  I  V  L  *  T  G  K  R  S  T  Q  V  Y  E  L  S  T  T  K  F  E  N  P  I  F  L  Q  F  D  R  S  G  Y  S  F  F  F  L  F  T  K  M  S  K  L  Y  G  G  D  F  N  Q  K  I  D  Y  V  F  K  A  V  L  I  G  D  S  A  V  G  K  S  Q  L  L  A  R  F  S  R  N  E  F  S  L  D  S  K  A  T  I  G  V  E  F  Q  T  R  T  L  E  I  D  N  K  T  I  K  A  Q  I  W  D  T  A  G  Q  E  R :   Y  R  A  V  T  S  A  Y  Y  R  G  A  V  G  A  M  L  V  Y  D  I  T  K  R  Q  S  F  D  H  I  A  R  W  L  E  E  L  R  G  H  A  D  K  N  I  V  I  M  L  V  G  N  K  T  D  L  G  S  L  R  A  V  P  T  E  D  A  K  E  F  A  E  K  E  N  L  F  F  I  E  T  S  A  L  E  S  T  N  V  D  T  A  F  V  N  V  L  T  E  I  Y  R  V  V  S  K  K  S  L  V  A  N  E  A  E  S  A  A  G  S  S  A  L  L  R  G  K  E  I  V  V  P  G  Q  G  P  V  P  S  G  S  S  Y  S  C  C  R  S  *  *  E  S  I  E  V  V  L  K  V  V  *  V  F  T  C  I  R  F  Q  C  Y  A  R  L  S  N  A  N  L  S  A  T  T  T  T  *  C  Y  I  G  I  H  P  L  S  S  L  *  F  A  L  S  S  F  V  *  K  R  I  T  V  Q  N  H  *  I  S  I  L  V  L  C  *  M  C  T  *  P  S  Q  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22586" stop="22926"/>
                    <exon start="26407" stop="26854"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TGKRSTQVYELSTTKFENPIFLQFDRSGYSFFFLFTKMSKLYGGDFNQKIDYVFKAVLIGDSAVGKSQLLARFSRNEFSLDSKATIGVEFQTRTLEIDNKTIKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHIARWLEELRGHADKNIVIMLVGNKTDLGSLRAVPTEDAKEFAEKENLFFIETSALESTNVDTAFVNVLTEIYRVVSKKSLVANEAESAAGSSALLRGKEIVVPGQGPVPSGSSYSCCRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="32850" PGL_stop="31407"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32850" e_stop="32509"/>
            <exon e_start="31781" e_stop="31407"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32850" e_stop="32509" e_length="342"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32508" i_stop="31782" i_length="727"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="31781" e_stop="31407" e_length="375"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32850" stop="32509"/>
              <exon start="31781" stop="31407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319206" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTATAGTATCAATTCAAAAAATATTTTTAAAAAATAAAATGACTAGTCGTACTTTAGTAATGCTGATATTAGTAATAACGTACAATAGTATTGCGGTGAAAGGAAGCAACGGTCATCCCTGTAGCAGCACATTCTTTTCAGCGTTGATTCAGCTGATACCTTGTAGGGCATCGGTGGTTCCGTTCAGTTCGGTACCACCGAGCGAAGCGTGCTGCGCTTCGATCAAGGCTTTAGGGCAGCCATGTCTCTGTGTTCTTATCAATGGCCCTCCTATTTCTGGTGTTGATCGAAACATGGCCGTACAGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAAT : GTGAATTTGGAAAGTAGGAGATACTAGATTGATTCTAGTAGGCGTGGTGAAGGAGAAGTCTATAGATCAATAAATTGTGCAGGGGAGCTTAGCAACTCTGCACAATTAGAAATATTTACTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTTGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATGTAATGCAAAATGGTCGCTTCGAAATGGTAATTAAACATTAGTGATAAGAACTTAGTGAATATTTATCATTTTGATGTCATTACATTAGTTCAAATTTATGCGATTATCAATCTTTACAAAAAAAAAAAAAATTATGAATCGATATATCTATGATATAATT</gDNA_template>
            <first_frame> K  L  *  Y  Q  F  K  K  Y  F  *  K  I  K  *  L  V  V  L  *  *  C  *  Y  *  *  *  R  T  I  V  L  R  *  K  E  A  T  V  I  P  V  A  A  H  S  F  Q  R  *  F  S  *  Y  L  V  G  H  R  W  F  R  S  V  R  Y  H  R  A  K  R  A  A  L  R  S  R  L  *  G  S  H  V  S  V  F  L  S  M  A  L  L  F  L  V  L  I  E  T  W  P  Y  S  F  L  R  S  A  L  P  T  L  N  N  :  V  N  L  E  S  R  R  Y  *  I  D  S  S  R  R  G  E  G  E  V  Y  R  S  I  N  C  A  G  E  L  S  N  S  A  Q  L  E  I  F  T  K  S  N  *  V  F  T  *  L  L  *  *  F  I  *  L  A  L  I  S  L  L  *  *  *  W  P  T  L  I  L  C  N  A  K  W  S  L  R  N  G  N  *  T  L  V  I  R  T  *  *  I  F  I  I  L  M  S  L  H  *  F  K  F  M  R  L  S  I  F  T  K  K  K  K  I  M  N  R  Y  I  Y  D  I  I </first_frame>
            <second_frame>  N  Y  S  I  N  S  K  N  I  F  K  K  *  N  D  *  S  Y  F  S  N  A  D  I  S  N  N  V  Q  *  Y  C  G  E  R  K  Q  R  S  S  L  *  Q  H  I  L  F  S  V  D  S  A  D  T  L  *  G  I  G  G  S  V  Q  F  G  T  T  E  R  S  V  L  R  F  D  Q  G  F  R  A  A  M  S  L  C  S  Y  Q  W  P  S  Y  F  W  C  *  S  K  H  G  R  T  A  S  *  E  V  H  C  Q  L  *  T  M :   *  I  W  K  V  G  D  T  R  L  I  L  V  G  V  V  K  E  K  S  I  D  Q  *  I  V  Q  G  S  L  A  T  L  H  N  *  K  Y  L  L  N  Q  I  K  C  S  L  N  C  Y  N  N  L  F  S  L  P  *  Y  H  C  Y  S  N  N  G  Q  H  *  Y  Y  V  M  Q  N  G  R  F  E  M  V  I  K  H  *  *  *  E  L  S  E  Y  L  S  F  *  C  H  Y  I  S  S  N  L  C  D  Y  Q  S  L  Q  K  K  K  K  L  *  I  D  I  S  M  I  *   </second_frame>
            <third_frame>   T  I  V  S  I  Q  K  I  F  L  K  N  K  M  T  S  R  T  L  V  M  L  I  L  V  I  T  Y  N  S  I  A  V  K  G  S  N  G  H  P  C  S  S  T  F  F  S  A  L  I  Q  L  I  P  C  R  A  S  V  V  P  F  S  S  V  P  P  S  E  A  C  C  A  S  I  K  A  L  G  Q  P  C  L  C  V  L  I  N  G  P  P  I  S  G  V  D  R  N  M  A  V  Q  L  P  E  K  C  T  A  N  F  E  Q   : C  E  F  G  K  *  E  I  L  D  *  F  *  *  A  W  *  R  R  S  L  *  I  N  K  L  C  R  G  A  *  Q  L  C  T  I  R  N  I  Y  *  I  K  L  S  V  H  L  I  V  I  I  I  Y  L  A  C  L  N  I  I  V  I  V  I  M  A  N  I  N  I  M  *  C  K  M  V  A  S  K  W  *  L  N  I  S  D  K  N  L  V  N  I  Y  H  F  D  V  I  T  L  V  Q  I  Y  A  I  I  N  L  Y  K  K  K  K  N  Y  E  S  I  Y  L  *  Y  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32848" stop="32509"/>
                    <exon start="31781" stop="31765"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIVSIQKIFLKNKMTSRTLVMLILVITYNSIAVKGSNGHPCSSTFFSALIQLIPCRASVVPFSSVPPSEACCASIKALGQPCLCVLINGPPISGVDRNMAVQLPEKCTANFEQCEFGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="33852" PGL_stop="34521"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33852" e_stop="34521"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33852" e_stop="34521" e_length="670"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33852" stop="34521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312996" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAACTCGAGTTTTCATCAGTAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTTG</gDNA_template>
            <first_frame> E  L  E  F  S  S  V  K  S  K  M  A  R  T  K  Q  T  A  R  K  S  T  G  G  K  A  P  R  K  Q  L  A  T  K  A  A  R  K  S  A  P  A  T  G  G  V  K  K  P  H  R  F  R  P  G  T  V  A  L  R  E  I  R  K  Y  Q  K  S  T  E  L  L  I  R  K  L  P  F  Q  R  L  V  R  E  I  A  Q  D  F  K  T  D  L  R  F  Q  S  S  A  V  A  A  L  Q  E  A  A  E  A  Y  L  V  G  L  F  E  D  T  N  L  C  A  I  H  A  K  R  V  T  I  M  P  K  D  I  Q  L  A  R  R  I  R  G  E  R  A  *  E  E  T  F  N  G  *  S  *  L  G  F  V  C  *  G  *  W  R  K  S  *  *  I  I  L  V  E  V  G  V  N  C  W  F  T  S  F  W  I  *  L  M  K  I  C  T  F  F  F  L  I  *  D  L  A  L  T  S  V  L  M  Y  S  N  D  *  R  L  K  Q  Y  T  V  F  L  </first_frame>
            <second_frame>  N  S  S  F  H  Q  *  K  A  K  W  P  V  P  S  R  L  L  A  N  P  L  V  E  R  H  Q  G  S  S  *  L  P  R  P  Q  E  S  Q  L  R  L  P  E  E  *  R  S  L  T  V  S  G  Q  E  L  *  L  *  G  K  S  G  S  T  R  S  L  L  S  C  *  S  G  S  F  L  F  R  G  *  *  G  K  S  L  R  I  S  K  Q  I  *  G  F  R  A  V  L  W  L  L  Y  K  R  L  L  R  L  T  S  L  V  S  L  K  I  L  I  S  V  Q  F  T  P  R  G  S  L  S  C  P  K  I  F  S  L  L  G  G  S  V  E  K  G  L  K  K  K  L  L  T  V  K  A  D  *  G  L  S  A  R  V  S  G  V  N  P  N  R  *  F  *  L  K  *  V  *  T  V  G  L  P  V  S  G  S  D  *  *  K  F  V  P  F  S  F  *  S  K  I  L  P  L  R  R  Y  *  C  I  P  M  I  N  D  *  S  N  T  Q  C  F  L </second_frame>
            <third_frame>   T  R  V  F  I  S  K  K  Q  N  G  P  Y  Q  A  D  C  S  Q  I  H  W  W  K  G  T  K  E  A  A  S  Y  Q  G  R  K  K  V  S  S  G  Y  R  R  S  E  E  A  S  P  F  Q  A  R  N  C  S  F  K  G  N  Q  E  V  P  E  V  Y  *  V  V  D  Q  E  A  S  F  S  E  A  S  E  G  N  R  S  G  F  Q  N  R  S  E  V  S  E  Q  C  C  G  C  S  T  R  G  C  *  G  L  P  R  W  S  L  *  R  Y  *  S  L  C  N  S  R  Q  E  G  H  Y  H  A  Q  R  Y  S  A  C  *  E  D  P  W  R  K  G  L  R  R  N  F  *  R  L  K  L  I  R  V  C  L  L  G  L  V  A  *  I  L  I  D  N  F  S  *  S  R  C  K  L  L  V  Y  Q  F  L  D  L  I  N  E  N  L  Y  L  F  L  F  N  L  R  S  C  P  Y  V  G  T  D  V  F  Q  *  L  T  I  E  A  I  H  S  V  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33852" stop="34292"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELEFSSVKSKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="38830" PGL_stop="33858"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38830" e_stop="38812"/>
            <exon e_start="38604" e_stop="38573"/>
            <exon e_start="35626" e_stop="35619"/>
            <exon e_start="34517" e_stop="33858"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.955" acc_prob="0.209" e_score="0.421"/>
          <exon-intron don_prob="0.000" acc_prob="0.027" e_score="0.750"/>
          <exon-intron don_prob="0.956" acc_prob="0.000" e_score="0.750"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.421">
            <gDNA_exon_boundary e_start="38830" e_stop="38812" e_length="19"/>
          </exon>
          <intron i_serial="1" don_prob="0.955" acc_prob="0.209">
            <gDNA_intron_boundary i_start="38811" i_stop="38605" i_length="207"/>
          </intron>
          <exon e_serial="2" e_score="0.750">
            <gDNA_exon_boundary e_start="38604" e_stop="38573" e_length="32"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.027">
            <gDNA_intron_boundary i_start="38572" i_stop="35627" i_length="2946"/>
          </intron>
          <exon e_serial="3" e_score="0.750">
            <gDNA_exon_boundary e_start="35626" e_stop="35619" e_length="8"/>
          </exon>
          <intron i_serial="3" don_prob="0.956" acc_prob="0.000">
            <gDNA_intron_boundary i_start="35618" i_stop="34518" i_length="1101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34517" e_stop="33858" e_length="660"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38830" stop="38812"/>
              <exon start="38604" stop="38573"/>
              <exon start="35626" stop="35619"/>
              <exon start="34517" stop="33858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334063" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGTTCGAAGCCTAAAGG : CGATTTACATTTTTCTTAATTTTTTTTGTTTG : ATGTTCAG : AAACACTGTGTATTGCTTCAATCGTTAATCATTGGAATACATCAGTACCGACGTAAGGGCAAGATCTTAGATTAAAAAGAAAAAGGTACAAATTTTCATTAATCAGATCCAGAAACTGGTAAACCAACAGTTTACACCTACTTCAACTAAAATTATCTATTAGGATTTACGCCACTAACCCTAGCAGACAAACCCTAATCAGCTTTAACCGTTAAAAGTTTCTTCTTAAGCCCTTTCTCCACGGATCCTCCTAGCAAGCTGAATATCTTTGGGCATGATAGTGACCCTCTTGGCGTGAATTGCACAGAGATTAGTATCTTCAAAGAGACCAACGAGGTAAGCCTCAGCAGCCTCTTGTAGAGCAGCCACAGCACTGCTCTGAAACCTCAGATCTGTTTTGAAATCCTGAGCGATTTCCCTCACTAGCCTCTGAAAAGGAAGCTTCCTGATCAACAACTCAGTAGACTTCTGGTACTTCCTGATTTCCCTTAAAGCTACAGTTCCTGGCCTGAAACGGTGAGGCTTCTTCACTCCTCCGGTAGCCGGAGCTGACTTTCTTGCGGCCTTGGTAGCTAGCTGCTTCCTTGGTGCCTTTCCACCAGTGGATTTGCGAGCAGTCTGCTTGGTACGGGCCATTTTGCTTTTTACTGATGAAAACTC</gDNA_template>
            <first_frame> G  V  R  S  L  K   : A  I  Y  I  F  L  N  F  F  C  L  :  M  F  R :   N  T  V  Y  C  F  N  R  *  S  L  E  Y  I  S  T  D  V  R  A  R  S  *  I  K  K  K  K  V  Q  I  F  I  N  Q  I  Q  K  L  V  N  Q  Q  F  T  P  T  S  T  K  I  I  Y  *  D  L  R  H  *  P  *  Q  T  N  P  N  Q  L  *  P  L  K  V  S  S  *  A  L  S  P  R  I  L  L  A  S  *  I  S  L  G  M  I  V  T  L  L  A  *  I  A  Q  R  L  V  S  S  K  R  P  T  R  *  A  S  A  A  S  C  R  A  A  T  A  L  L  *  N  L  R  S  V  L  K  S  *  A  I  S  L  T  S  L  *  K  G  S  F  L  I  N  N  S  V  D  F  W  Y  F  L  I  S  L  K  A  T  V  P  G  L  K  R  *  G  F  F  T  P  P  V  A  G  A  D  F  L  A  A  L  V  A  S  C  F  L  G  A  F  P  P  V  D  L  R  A  V  C  L  V  R  A  I  L  L  F  T  D  E  N   </first_frame>
            <second_frame>  E  F  E  A  *  R  :  R  F  T  F  F  L  I  F  F  V  * :   C  S   : E  T  L  C  I  A  S  I  V  N  H  W  N  T  S  V  P  T  *  G  Q  D  L  R  L  K  R  K  R  Y  K  F  S  L  I  R  S  R  N  W  *  T  N  S  L  H  L  L  Q  L  K  L  S  I  R  I  Y  A  T  N  P  S  R  Q  T  L  I  S  F  N  R  *  K  F  L  L  K  P  F  L  H  G  S  S  *  Q  A  E  Y  L  W  A  *  *  *  P  S  W  R  E  L  H  R  D  *  Y  L  Q  R  D  Q  R  G  K  P  Q  Q  P  L  V  E  Q  P  Q  H  C  S  E  T  S  D  L  F  *  N  P  E  R  F  P  S  L  A  S  E  K  E  A  S  *  S  T  T  Q  *  T  S  G  T  S  *  F  P  L  K  L  Q  F  L  A  *  N  G  E  A  S  S  L  L  R  *  P  E  L  T  F  L  R  P  W  *  L  A  A  S  L  V  P  F  H  Q  W  I  C  E  Q  S  A  W  Y  G  P  F  C  F  L  L  M  K  T  </second_frame>
            <third_frame>   S  S  K  P  K  G :   D  L  H  F  S  *  F  F  L  F   : D  V  Q  :  K  H  C  V  L  L  Q  S  L  I  I  G  I  H  Q  Y  R  R  K  G  K  I  L  D  *  K  E  K  G  T  N  F  H  *  S  D  P  E  T  G  K  P  T  V  Y  T  Y  F  N  *  N  Y  L  L  G  F  T  P  L  T  L  A  D  K  P  *  S  A  L  T  V  K  S  F  F  L  S  P  F  S  T  D  P  P  S  K  L  N  I  F  G  H  D  S  D  P  L  G  V  N  C  T  E  I  S  I  F  K  E  T  N  E  V  S  L  S  S  L  L  *  S  S  H  S  T  A  L  K  P  Q  I  C  F  E  I  L  S  D  F  P  H  *  P  L  K  R  K  L  P  D  Q  Q  L  S  R  L  L  V  L  P  D  F  P  *  S  Y  S  S  W  P  E  T  V  R  L  L  H  S  S  G  S  R  S  *  L  S  C  G  L  G  S  *  L  L  P  W  C  L  S  T  S  G  F  A  S  S  L  L  G  T  G  H  F  A  F  Y  *  *  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0323C14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="43582" PGL_stop="44063"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43582" e_stop="44063"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43582" e_stop="44063" e_length="482"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43582" stop="44063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343605" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGATCCTAGACTTAAGGTGGTTTCGGTGGTGGGAATGGGAGGTTCAGGAAAGACCACCCTGGTTAAGAAAGTGTATGAGGATGCAACAGTCAAGAAAAACTTCAATAGTCTTGCTTGGATAACAGTTTCCAAGTCCTTCAAGGTTGAGGAAGTTTTGAAAGATATGATTCAACAGCTCTACGATGAAGTGAAGCAGCCAGCACCTGAAGGTCTAAACACCATGAGTAGTAACAGACTAAAAACAATTGCGAAAGTATTCCTGCAATCAAGAACATATGTGCTAGTTTTTGATGATGTTTGGAGCATTCAAGCTTGGGAAGCTATCAGATATGCATTGCCTGATGTAAATGACGGAAGTCGTGTTATCCTCACAACACGTCTTTTGGATGTGGCTTCCTTTTGTAGCATAGAGACCAATGGCTATGTTTATGAGGTGAAACCCTTGTCTACTGAAGAGTCATGGATTCTTTTCTGCCAAAAG</gDNA_template>
            <first_frame> M  I  L  D  L  R  W  F  R  W  W  E  W  E  V  Q  E  R  P  P  W  L  R  K  C  M  R  M  Q  Q  S  R  K  T  S  I  V  L  L  G  *  Q  F  P  S  P  S  R  L  R  K  F  *  K  I  *  F  N  S  S  T  M  K  *  S  S  Q  H  L  K  V  *  T  P  *  V  V  T  D  *  K  Q  L  R  K  Y  S  C  N  Q  E  H  M  C  *  F  L  M  M  F  G  A  F  K  L  G  K  L  S  D  M  H  C  L  M  *  M  T  E  V  V  L  S  S  Q  H  V  F  W  M  W  L  P  F  V  A  *  R  P  M  A  M  F  M  R  *  N  P  C  L  L  K  S  H  G  F  F  S  A  K   </first_frame>
            <second_frame>  *  S  *  T  *  G  G  F  G  G  G  N  G  R  F  R  K  D  H  P  G  *  E  S  V  *  G  C  N  S  Q  E  K  L  Q  *  S  C  L  D  N  S  F  Q  V  L  Q  G  *  G  S  F  E  R  Y  D  S  T  A  L  R  *  S  E  A  A  S  T  *  R  S  K  H  H  E  *  *  Q  T  K  N  N  C  E  S  I  P  A  I  K  N  I  C  A  S  F  *  *  C  L  E  H  S  S  L  G  S  Y  Q  I  C  I  A  *  C  K  *  R  K  S  C  Y  P  H  N  T  S  F  G  C  G  F  L  L  *  H  R  D  Q  W  L  C  L  *  G  E  T  L  V  Y  *  R  V  M  D  S  F  L  P  K  </second_frame>
            <third_frame>   D  P  R  L  K  V  V  S  V  V  G  M  G  G  S  G  K  T  T  L  V  K  K  V  Y  E  D  A  T  V  K  K  N  F  N  S  L  A  W  I  T  V  S  K  S  F  K  V  E  E  V  L  K  D  M  I  Q  Q  L  Y  D  E  V  K  Q  P  A  P  E  G  L  N  T  M  S  S  N  R  L  K  T  I  A  K  V  F  L  Q  S  R  T  Y  V  L  V  F  D  D  V  W  S  I  Q  A  W  E  A  I  R  Y  A  L  P  D  V  N  D  G  S  R  V  I  L  T  T  R  L  L  D  V  A  S  F  C  S  I  E  T  N  G  Y  V  Y  E  V  K  P  L  S  T  E  E  S  W  I  L  F  C  Q  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43584" stop="44063"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DPRLKVVSVVGMGGSGKTTLVKKVYEDATVKKNFNSLAWITVSKSFKVEEVLKDMIQQLYDEVKQPAPEGLNTMSSNRLKTIAKVFLQSRTYVLVFDDVWSIQAWEAIRYALPDVNDGSRVILTTRLLDVASFCSIETNGYVYEVKPLSTEESWILFCQK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="44179" PGL_stop="44761"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44179" e_stop="44761"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="44179" e_stop="44761" e_length="583"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44179" stop="44703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44496" stop="44761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339819" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAACAGGAACAACATTAGGGAATGGGGAATGCTTAATCACAGCCTTGGCCCTGAACTGGATTGCAATGACAAATTTGAGAGTATGAGAATAGTTTTGTTACTCAGTTTCAATGATCTCCCCTACTATCTTAAGCCATGTTTCCTGTATTTGAGCATTTATCCTGAGGATTATCTAATTGAGCGCAATACACTGATCTACCGGTGGATAACGGAAGGATTTGTAAAACAAAAAGAACGGAGGACAGTTGAAGACGTTGCAGACGGCTATCTCAATGAGCTCATCAACAGAAGCTTGATCCACCCTGTGCAGTACAATGATGACGGTAGCATGAAATTGGGTAGGATTCATGATCTGTACCGCGAGCTTATTCTATCAAAATCAAGAGATGATAACTTTACTGCAACAGTTGATGAGCATAATAAATTGTGGCCTGAAAAAACTCGACGGCTTTCAATGCATGGCATGTTGGGGAACCTACAAGTGAAAAGGTCAGTCACTAAACTTCGCTCTTTGCTTACATTTGGTGTAGCAGATCCACAGTCCTTGTCTTGCATAAGTCAAGTGCTTGGTAGCTCCCGGAT</gDNA_template>
            <first_frame> R  T  G  T  T  L  G  N  G  E  C  L  I  T  A  L  A  L  N  W  I  A  M  T  N  L  R  V  *  E  *  F  C  Y  S  V  S  M  I  S  P  T  I  L  S  H  V  S  C  I  *  A  F  I  L  R  I  I  *  L  S  A  I  H  *  S  T  G  G  *  R  K  D  L  *  N  K  K  N  G  G  Q  L  K  T  L  Q  T  A  I  S  M  S  S  S  T  E  A  *  S  T  L  C  S  T  M  M  T  V  A  *  N  W  V  G  F  M  I  C  T  A  S  L  F  Y  Q  N  Q  E  M  I  T  L  L  Q  Q  L  M  S  I  I  N  C  G  L  K  K  L  D  G  F  Q  C  M  A  C  W  G  T  Y  K  *  K  G  Q  S  L  N  F  A  L  C  L  H  L  V  *  Q  I  H  S  P  C  L  A  *  V  K  C  L  V  A  P  G  </first_frame>
            <second_frame>  E  Q  E  Q  H  *  G  M  G  N  A  *  S  Q  P  W  P  *  T  G  L  Q  *  Q  I  *  E  Y  E  N  S  F  V  T  Q  F  Q  *  S  P  L  L  S  *  A  M  F  P  V  F  E  H  L  S  *  G  L  S  N  *  A  Q  Y  T  D  L  P  V  D  N  G  R  I  C  K  T  K  R  T  E  D  S  *  R  R  C  R  R  L  S  Q  *  A  H  Q  Q  K  L  D  P  P  C  A  V  Q  *  *  R  *  H  E  I  G  *  D  S  *  S  V  P  R  A  Y  S  I  K  I  K  R  *  *  L  Y  C  N  S  *  *  A  *  *  I  V  A  *  K  N  S  T  A  F  N  A  W  H  V  G  E  P  T  S  E  K  V  S  H  *  T  S  L  F  A  Y  I  W  C  S  R  S  T  V  L  V  L  H  K  S  S  A  W  *  L  P  D </second_frame>
            <third_frame>   N  R  N  N  I  R  E  W  G  M  L  N  H  S  L  G  P  E  L  D  C  N  D  K  F  E  S  M  R  I  V  L  L  L  S  F  N  D  L  P  Y  Y  L  K  P  C  F  L  Y  L  S  I  Y  P  E  D  Y  L  I  E  R  N  T  L  I  Y  R  W  I  T  E  G  F  V  K  Q  K  E  R  R  T  V  E  D  V  A  D  G  Y  L  N  E  L  I  N  R  S  L  I  H  P  V  Q  Y  N  D  D  G  S  M  K  L  G  R  I  H  D  L  Y  R  E  L  I  L  S  K  S  R  D  D  N  F  T  A  T  V  D  E  H  N  K  L  W  P  E  K  T  R  R  L  S  M  H  G  M  L  G  N  L  Q  V  K  R  S  V  T  K  L  R  S  L  L  T  F  G  V  A  D  P  Q  S  L  S  C  I  S  Q  V  L  G  S  S  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44181" stop="44759"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRNNIREWGMLNHSLGPELDCNDKFESMRIVLLLSFNDLPYYLKPCFLYLSIYPEDYLIERNTLIYRWITEGFVKQKERRTVEDVADGYLNELINRSLIHPVQYNDDGSMKLGRIHDLYRELILSKSRDDNFTATVDEHNKLWPEKTRRLSMHGMLGNLQVKRSVTKLRSLLTFGVADPQSLSCISQVLGSSR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="44867" PGL_stop="45327"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44867" e_stop="45327"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="44867" e_stop="45327" e_length="461"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44867" stop="45327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345502" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTACTTCCAAGATCCATTGGAAGACTCAAACAGCTAGAAATATTAGATCTCAAGCAGACACATGTCACTGAGTTGCCTGTGGAGATTTTAAAACTTGAAAATCTCCGTCACCTTTTAGTCTATAGCCATGTATCCTATTCGTATCTTCCTTACAACTGTTCACCAGGTTTTAAGGCTTTCCGAGGAATTGGAGCTTTGAGAGCCTTGCAGAAACTTGTGTATATTGAGGCCACCCCTGGCAGTGGCATACTTAGAGAAGTAGGAATGTTGGGTGAACTGAGACGACTTTGTATTCTGAAGTTGAGAAAAGAAGATGGGAGGACAGTGTGCTCATCAATTCAAAAGCTCCGCAAGCTGGAGTCTTTAAATCTTAAATCGGTGGAAGAGCATGAGATACTTGATCTTTCTTACATGGCATCTCCTCCGCCTCTTCTTCAGCGCCTGTATTTGACAGGACACA</gDNA_template>
            <first_frame> S  T  S  K  I  H  W  K  T  Q  T  A  R  N  I  R  S  Q  A  D  T  C  H  *  V  A  C  G  D  F  K  T  *  K  S  P  S  P  F  S  L  *  P  C  I  L  F  V  S  S  L  Q  L  F  T  R  F  *  G  F  P  R  N  W  S  F  E  S  L  A  E  T  C  V  Y  *  G  H  P  W  Q  W  H  T  *  R  S  R  N  V  G  *  T  E  T  T  L  Y  S  E  V  E  K  R  R  W  E  D  S  V  L  I  N  S  K  A  P  Q  A  G  V  F  K  S  *  I  G  G  R  A  *  D  T  *  S  F  L  H  G  I  S  S  A  S  S  S  A  P  V  F  D  R  T   </first_frame>
            <second_frame>  V  L  P  R  S  I  G  R  L  K  Q  L  E  I  L  D  L  K  Q  T  H  V  T  E  L  P  V  E  I  L  K  L  E  N  L  R  H  L  L  V  Y  S  H  V  S  Y  S  Y  L  P  Y  N  C  S  P  G  F  K  A  F  R  G  I  G  A  L  R  A  L  Q  K  L  V  Y  I  E  A  T  P  G  S  G  I  L  R  E  V  G  M  L  G  E  L  R  R  L  C  I  L  K  L  R  K  E  D  G  R  T  V  C  S  S  I  Q  K  L  R  K  L  E  S  L  N  L  K  S  V  E  E  H  E  I  L  D  L  S  Y  M  A  S  P  P  P  L  L  Q  R  L  Y  L  T  G  H  </second_frame>
            <third_frame>   Y  F  Q  D  P  L  E  D  S  N  S  *  K  Y  *  I  S  S  R  H  M  S  L  S  C  L  W  R  F  *  N  L  K  I  S  V  T  F  *  S  I  A  M  Y  P  I  R  I  F  L  T  T  V  H  Q  V  L  R  L  S  E  E  L  E  L  *  E  P  C  R  N  L  C  I  L  R  P  P  L  A  V  A  Y  L  E  K  *  E  C  W  V  N  *  D  D  F  V  F  *  S  *  E  K  K  M  G  G  Q  C  A  H  Q  F  K  S  S  A  S  W  S  L  *  I  L  N  R  W  K  S  M  R  Y  L  I  F  L  T  W  H  L  L  R  L  F  F  S  A  C  I  *  Q  D  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44868" stop="45326"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLPRSIGRLKQLEILDLKQTHVTELPVEILKLENLRHLLVYSHVSYSYLPYNCSPGFKAFRGIGALRALQKLVYIEATPGSGILREVGMLGELRRLCILKLRKEDGRTVCSSIQKLRKLESLNLKSVEEHEILDLSYMASPPPLLQRLYLTGH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="45352" PGL_stop="45923"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45352" e_stop="45923"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="45352" e_stop="45923" e_length="572"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45352" stop="45923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342488" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGATCTTAATTCCTTAGTCAAAATTTACTTCAGGTGGACTCATTTATCAGAAGATCCACTGAAATATCTCCAAGATTTGCCCAATCTTGTCCATCTTGAATTTCTTGTAGGATACACCGGAAGGGAACTGTACTTTGAGCAAGGCAAGTTTCAAAGGCTTAAGCTTTTAAATTTTGACATGTTGGAAGGACTAAGGCAGGTGACAATCGGGGAAGGTGCAGTACCTCATCTTGAGAAGCTGGTTATCCAGCGATGTGCTTTGCTTGAGACCGTGCCAACTGGAATAGAGTGCCTCCTAAATCTGAAGGTTCTTGAATTCTTTGACATGCCTGATGAATTTATCATGACGTTGCGTCCAGACAAACTAGGTGCTGATGCTTGGAAAGTTTCACATATCCGTGAAGTATTCTATACATATTGGAGGGACGGTTGTTGGATGGTACATTCACTAAAGGAAAAGGAAAACAATCACATTTCTGATCCATCTGGAGCTGTGACTAGGACCTATGGAAGGCGAAATTCACTCTAAGTCGTTTGAAGGACGTAGAGCTCCAGTCTCCTTCCAATTTCT</gDNA_template>
            <first_frame> K  I  L  I  P  *  S  K  F  T  S  G  G  L  I  Y  Q  K  I  H  *  N  I  S  K  I  C  P  I  L  S  I  L  N  F  L  *  D  T  P  E  G  N  C  T  L  S  K  A  S  F  K  G  L  S  F  *  I  L  T  C  W  K  D  *  G  R  *  Q  S  G  K  V  Q  Y  L  I  L  R  S  W  L  S  S  D  V  L  C  L  R  P  C  Q  L  E  *  S  A  S  *  I  *  R  F  L  N  S  L  T  C  L  M  N  L  S  *  R  C  V  Q  T  N  *  V  L  M  L  G  K  F  H  I  S  V  K  Y  S  I  H  I  G  G  T  V  V  G  W  Y  I  H  *  R  K  R  K  T  I  T  F  L  I  H  L  E  L  *  L  G  P  M  E  G  E  I  H  S  K  S  F  E  G  R  R  A  P  V  S  F  Q  F   </first_frame>
            <second_frame>  R  S  *  F  L  S  Q  N  L  L  Q  V  D  S  F  I  R  R  S  T  E  I  S  P  R  F  A  Q  S  C  P  S  *  I  S  C  R  I  H  R  K  G  T  V  L  *  A  R  Q  V  S  K  A  *  A  F  K  F  *  H  V  G  R  T  K  A  G  D  N  R  G  R  C  S  T  S  S  *  E  A  G  Y  P  A  M  C  F  A  *  D  R  A  N  W  N  R  V  P  P  K  S  E  G  S  *  I  L  *  H  A  *  *  I  Y  H  D  V  A  S  R  Q  T  R  C  *  C  L  E  S  F  T  Y  P  *  S  I  L  Y  I  L  E  G  R  L  L  D  G  T  F  T  K  G  K  G  K  Q  S  H  F  *  S  I  W  S  C  D  *  D  L  W  K  A  K  F  T  L  S  R  L  K  D  V  E  L  Q  S  P  S  N  F  </second_frame>
            <third_frame>   D  L  N  S  L  V  K  I  Y  F  R  W  T  H  L  S  E  D  P  L  K  Y  L  Q  D  L  P  N  L  V  H  L  E  F  L  V  G  Y  T  G  R  E  L  Y  F  E  Q  G  K  F  Q  R  L  K  L  L  N  F  D  M  L  E  G  L  R  Q  V  T  I  G  E  G  A  V  P  H  L  E  K  L  V  I  Q  R  C  A  L  L  E  T  V  P  T  G  I  E  C  L  L  N  L  K  V  L  E  F  F  D  M  P  D  E  F  I  M  T  L  R  P  D  K  L  G  A  D  A  W  K  V  S  H  I  R  E  V  F  Y  T  Y  W  R  D  G  C  W  M  V  H  S  L  K  E  K  E  N  N  H  I  S  D  P  S  G  A  V  T  R  T  Y  G  R  R  N  S  L  *  V  V  *  R  T  *  S  S  S  L  L  P  I  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45354" stop="45881"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLNSLVKIYFRWTHLSEDPLKYLQDLPNLVHLEFLVGYTGRELYFEQGKFQRLKLLNFDMLEGLRQVTIGEGAVPHLEKLVIQRCALLETVPTGIECLLNLKVLEFFDMPDEFIMTLRPDKLGADAWKVSHIREVFYTYWRDGCWMVHSLKEKENNHISDPSGAVTRTYGRRNSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="50764" PGL_stop="50020"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50764" e_stop="50539"/>
            <exon e_start="50151" e_stop="50123"/>
            <exon e_start="50032" e_stop="50020"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.448" e_score="0.903"/>
          <exon-intron don_prob="0.406" acc_prob="0.212" e_score="0.586"/>
          <exon-only e_score="0.615"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="50764" e_stop="50539" e_length="226"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.448">
            <gDNA_intron_boundary i_start="50538" i_stop="50152" i_length="387"/>
          </intron>
          <exon e_serial="2" e_score="0.586">
            <gDNA_exon_boundary e_start="50151" e_stop="50123" e_length="29"/>
          </exon>
          <intron i_serial="2" don_prob="0.406" acc_prob="0.212">
            <gDNA_intron_boundary i_start="50122" i_stop="50033" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="0.615">
            <gDNA_exon_boundary e_start="50032" e_stop="50020" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50764" stop="50539"/>
              <exon start="50151" stop="50123"/>
              <exon start="50032" stop="50020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335074" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGAATACTCTTGGTTTAGTCATTTGATTGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATGATAATAATAGTTTTGAATTGT : GTCAGGTGAATATTGAAGATTTGTAGCAA : CAAAGTCAAACAA</gDNA_template>
            <first_frame> S  N  S  S  Q  S  Y  Y  I  G  N  S  G  *  A  N  A  S  S  L  D  W  I  F  F  F  K  S  *  C  L  E  L  P  A  W  T  S  F  L  C  I  F  S  F  *  N  T  L  G  L  V  I  *  L  *  M  F  L  *  *  *  L  P  D  F  G  D  D  N  N  S  F  E  L   : C  Q  V  N  I  E  D  L  *  Q  :  Q  S  Q  T  </first_frame>
            <second_frame>  V  I  Q  A  S  L  T  T  S  E  I  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  S  L  D  A  L  N  F  R  H  G  L  A  S  Y  V  F  L  A  F  R  I  L  L  V  *  S  F  D  C  R  C  S  C  D  D  D  F  Q  I  L  G  M  I  I  I  V  L  N  C  :  V  R  *  I  L  K  I  C  S  N :   K  V  K  Q </second_frame>
            <third_frame>   *  F  K  P  V  L  L  H  R  K  F  R  V  S  *  C  F  *  L  G  L  D  L  L  L  Q  V  L  M  P  *  T  S  G  M  D  *  L  L  M  Y  F  *  L  L  E  Y  S  W  F  S  H  L  I  V  D  V  L  V  M  M  T  S  R  F  W  G  *  *  *  *  F  *  I  V :   S  G  E  Y  *  R  F  V  A   : T  K  S  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0323C14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="52948" PGL_stop="53124"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52948" e_stop="53124"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="52948" e_stop="53124" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52948" stop="53124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATCAATGCTTGAGTGATAGTTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  G  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  D  H  Q  T  L  S  H  T  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  G  H  I  N  A  *  V  I  V  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  T  T  K  L  Y  H  T  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0323C14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="54429" PGL_stop="57138"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54429" e_stop="57138"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="54429" e_stop="57138" e_length="2710"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54429" stop="55141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55018" stop="55775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55628" stop="56186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55632" stop="57067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56707" stop="57138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTATATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACGCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGCTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACGCACGAACTACTGAAACCGACTCAATCGTAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCCTAGCACAAAGAAAGGAGACGATGCGGACCGGATTGGGAGTGTAGTCACCATCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAATCATACCCAGAATCACGTCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTGGAGACACGAATGGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGGTGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCAACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTTTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAAATCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCGATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGCAGTAGCTCGTGACAGTCAACTAGAAAATCATAAGCATCCTCAAATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCTATTGTACTTCCGGAGCCTGAGGTGCTGGTGCAGAGAACACTGGGGGTGTCTGGCCTTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCGTTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGGGGAGTCACTGCCCTAGTATCAGATGGTCTAGGTGCTTGTCCTCTCCCTCTAGAGGACGTCCTCCCACAACCTCTTCCACGGCCCCTTGCCGTTGTTCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  G  S  Y  P  I  L  H  C  L  Y  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  R  I  *  P  K  R  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  G  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  I  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  V  Q  *  L  L  K  L  C  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  G  F  K  I  N  T  E  V  N  I  P  I  R  W  H  T  R  K  I  C  R  E  H  I  Q  K  R  T  N  Y  *  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  P  S  T  K  K  G  D  D  A  D  R  I  G  S  V  V  T  I  P  H  *  R  V  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  C  K  L  R  R  K  P  N  H  T  Q  N  H  V  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  Y  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  G  D  T  N  G  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  R  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  R  L  S  V  A  P  T  M  L  W  C  S  G  P  S  L  P  I  T  S  A  V  L  V  T  T  I  T  S  T  T  T  P  S  R  K  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  V  T  W  S  G  T  I  S  P  N  M  S  N  L  P  T  S  I  T  F  F  G  V  D  H  M  P  L  G  E  V  L  T  G  L  R  W  S  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  S  S  V  R  T  I  K  I  T  S  L  S  K  P  F  *  C  R  C  C  G  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  L  L  E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  A  N  P  L  L  R  T  E  T  E  L  S  G  I  S  G  *  C  T  K  L  S  L  I  S  I  N  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  T  R  E  *  G  P  S  H  R  W  C  L  Y  W  L  T  L  D  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  P  F  Y  Y  T  H  L  V  Q  *  L  V  T  V  N  *  K  I  I  S  I  L  K  F  R  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  Y  C  T  S  G  A  *  G  A  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  V  S  S  F  C  T  C  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  C  P  L  P  L  E  D  V  L  P  Q  P  L  P  R  P  L  A  V  V  L  </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  Y  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  A  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  A  R  T  T  E  T  D  S  I  V  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  I  I  F  L  A  Q  R  K  E  T  M  R  T  G  L  G  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  I  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  M  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  G  V  V  A  P  V  C  P  L  P  L  P  F  W  *  P  L  L  P  Q  P  P  R  P  P  E  K  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  G  L  G  Q  F  L  L  I  C  P  I  S  P  H  P  *  H  S  L  E  S  I  I  C  P  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  L  P  E  P  C  P  L  V  *  E  P  L  K  S  P  P  F  R  S  L  F  D  V  D  V  V  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  R  I  R  S  *  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  *  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  R  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  I  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  N  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  K  R  G  N  V  P  I  S  N  G  T  S  M  R  G  A  I  V  A  A  I  V  L  P  E  P  E  V  L  V  Q  R  T  L  G  V  S  G  L  D  Q  T  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  F  P  H  F  A  L  V  Q  F  P  H  P  P  L  L  L  L  L  P  Q  S  V  G  E  S  L  P  *  Y  Q  M  V  *  V  L  V  L  S  L  *  R  T  S  S  H  N  L  F  H  G  P  L  P  L  F  F </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  W  V  L  P  N  S  S  L  S  I  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  P  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  R  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  N  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  E  A  V  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  R  V  Q  D  Q  Y  R  S  Q  Y  P  Y  P  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  E  L  L  K  P  T  Q  S  *  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  S  F  S  *  H  K  E  R  R  R  C  G  P  D  W  E  C  S  H  H  P  T  L  T  G  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  L  Q  I  A  E  K  A  K  S  Y  P  E  S  R  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  L  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  W  R  H  E  W  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  T  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  S  S  V  R  C  P  Y  H  V  V  V  *  W  P  Q  F  A  H  Y  L  C  R  F  G  D  H  Y  Y  L  N  H  H  A  L  Q  K  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  C  N  L  V  W  D  N  F  S  *  Y  V  Q  S  P  H  I  H  N  I  L  W  S  R  S  Y  A  P  R  R  S  V  D  R  S  E  V  V  P  Q  L  Q  F  V  V  K  T  E  L  V  G  L  S  N  F  P  N  P  V  L  *  C  K  N  H  *  N  H  L  P  F  E  A  F  L  M  S  M  L  W  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  P  L  G  R  I  L  P  L  P  L  S  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  G  E  S  A  L  E  D  *  N  R  V  E  W  H  I  W  I  V  H  E  T  *  P  H  K  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  D  P  S  K  S  G  G  Y  T  S  P  *  T  N  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  R  H  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  Q  T  V  L  L  Y  P  S  C  A  V  A  R  D  S  Q  L  E  N  H  K  H  P  Q  I  P  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  N  V  E  T  C  L  F  P  M  E  H  P  C  G  E  P  *  *  P  L  L  Y  F  R  S  L  R  C  W  C  R  E  H  W  G  C  L  A  L  I  R  Q  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  R  F  L  I  L  H  L  F  S  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  G  S  H  C  P  S  I  R  W  S  R  C  L  S  S  P  S  R  G  R  P  P  T  T  S  S  T  A  P  C  R  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55686" stop="56114"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRYIRKRGSRIKQYRSHAITNQKITCDDSIRCLRFRPPRESVTMGPIVRLSVAPTMLWCSGPSLPITSAVLVTTITSTTTPSRKTASTMTTSTSSYWGSVTWSGTISPNMSNLPTSITFFGVDHMPLGEVLTGLRWSPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56843" stop="57136"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLLYFRSLRCWCREHWGCLALIRQPAKISQNLIDHLWGRLGWRFLILHLFSFPILPFSYYFLSRWGSHCPSIRWSRCLSSPSRGRPPTTSSTAPCRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55156" stop="55401"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNTSRNARTTETDSIVGTWVVSSLRCAKKAKHPLLIIFLAQRKETMRTGLGV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54693" stop="54932"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNPVHQAHERSRGIRKTKGHHYKFVMPIPRSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56170" stop="56364"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLKSPPFRSLFDVDVVVKSSGFTPSTSITKSTTSWKDFAVAAICKAEIRNSDLNPFTNRRIRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="54429" e_stop="55511"/>
            <exon e_start="56256" e_stop="56445"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.106" acc_prob="0.000" e_score="0.930"/>
          <exon-only e_score="0.889"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="54429" e_stop="55511" e_length="1083"/>
          </exon>
          <intron i_serial="1" don_prob="0.106" acc_prob="0.000">
            <gDNA_intron_boundary i_start="55512" i_stop="56255" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.889">
            <gDNA_exon_boundary e_start="56256" e_stop="56445" e_length="190"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54429" stop="55141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55001" stop="55511"/>
              <exon start="56256" stop="56445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTATATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACGCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGCTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACGCACGAACTACTGAAACCGACTCAATCGTAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCCTAGCACAAAGAAAGGAGACGATGCGGACCGGATTGGGAGTGTAGTCACCATCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAATCATACCCAGAATCAC : CACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  G  S  Y  P  I  L  H  C  L  Y  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  R  I  *  P  K  R  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  G  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  I  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  V  Q  *  L  L  K  L  C  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  G  F  K  I  N  T  E  V  N  I  P  I  R  W  H  T  R  K  I  C  R  E  H  I  Q  K  R  T  N  Y  *  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  P  S  T  K  K  G  D  D  A  D  R  I  G  S  V  V  T  I  P  H  *  R  V  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  C  K  L  R  R  K  P  N  H  T  Q  N  H  :  H  K  V  Y  H  L  L  E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  A  N  P  L  L  R  T  E  T  E  L  S  G  I  S  G  *  C  T  K  L  S  L  I  S  I  N  R  H  P  T  L  </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  Y  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  A  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  A  R  T  T  E  T  D  S  I  V  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  I  I  F  L  A  Q  R  K  E  T  M  R  T  G  L  G  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  I  I  P  R  I  T :   T  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  R  I  R  S  *  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  *  A  L  T  D  I  L  P  C </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  W  V  L  P  N  S  S  L  S  I  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  P  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  R  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  N  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  E  A  V  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  R  V  Q  D  Q  Y  R  S  Q  Y  P  Y  P  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  E  L  L  K  P  T  Q  S  *  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  S  F  S  *  H  K  E  R  R  R  C  G  P  D  W  E  C  S  H  H  P  T  L  T  G  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  L  Q  I  A  E  K  A  K  S  Y  P  E  S   : P  Q  S  L  P  P  L  G  R  I  L  P  L  P  L  S  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  G  E  S  A  L  E  D  *  N  R  V  E  W  H  I  W  I  V  H  E  T  *  P  H  K  H  *  P  T  S  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55156" stop="55401"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNTSRNARTTETDSIVGTWVVSSLRCAKKAKHPLLIIFLAQRKETMRTGLGV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54693" stop="54932"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNPVHQAHERSRGIRKTKGHHYKFVMPIPRSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55402" stop="55511"/>
                    <exon start="56256" stop="56364"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPSHTNGSVPGLANVTVLALQSKIANCGESQIIPRITTKSTTSWKDFAVAAICKAEIRNSDLNPFTNRRIRS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54625" stop="54822"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKIPFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="57430" PGL_stop="57145"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57430" e_stop="57145"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="57430" e_stop="57145" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57430" stop="57145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAATAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACATCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  R  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  S  L  F  H  S  F  F  R  A  T  T  *  V  Q  L  V  S  R  R  Y  E  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  S  A  R  Q  E  T  T  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  I  G  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  I  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  R  P  D  K  K  Q  L  S  Q  P  L  G  L  W </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  *  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  *  A  I  R  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  A  N  T  N  I  G  Q  T  R  N  N  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57381" stop="57145"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFILSFVLLLESNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQHRPDKKQLSQPLGLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="63585" PGL_stop="62874"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63585" e_stop="62874"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="63585" e_stop="62874" e_length="712"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63585" stop="62874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333102" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAATAGGATTTTAATAATTTTTAGATAAAAAAAAGGGTTCTCTTCACTGTATTTCCTCTTTCCGGCCAGCTCACTGCCGGAGCACCATCTCCCAAAGGCCACCACCACCAAAAAGTTGGCTAGAACAATTCATATTTTTCGGTGAAGCTCCAACCAGCCACTAAATCGCTGCTAAACTCAGCCTCGTTCCTTCACGAACAGCCAACCAAACAGATCCATGTCCTCCTTTCTTCTTCTCTTCTCCGACCAAACATCGCTCAACCCAAACTTCCCTTCTGTTTTCAGCCAACAACACCAGAAAAAACCTCCAAAACCCCCACCAAAAGCCATCGGAAATAACCATTAACTCCGACCATAACGTTGCCAATAGAAAATCCAACCAGATTTAAACCTCACTGGTCCAGCTTCGCAAAGCCACGACGCCAAATTCCGGCGAAACTAGACCCAAAACCCCACCGCCCAGTCCCTTTCTCTCCCCCTTTACGATTTTGTTCATCTTGTAGGTATTCCGGCGAAACTTCGAACTCCGGCAAGCTGCGAACCAACAACACCAAGAACTTGAAATTTCGATGACCCTTCTCTCTTTTTCACATTGTTTGTATAAAGTTATGTTGATTTTTAGATTCCAGATGTTATTGTTACTTCTTGTTGTTTGTTATCAACTTGGGATTTTAAAGTTTATTTTTTGGCACTTGCTTATGTTTCCAGCTT</gDNA_template>
            <first_frame> R  I  G  F  *  *  F  L  D  K  K  K  G  S  L  H  C  I  S  S  F  R  P  A  H  C  R  S  T  I  S  Q  R  P  P  P  P  K  S  W  L  E  Q  F  I  F  F  G  E  A  P  T  S  H  *  I  A  A  K  L  S  L  V  P  S  R  T  A  N  Q  T  D  P  C  P  P  F  F  F  S  S  P  T  K  H  R  S  T  Q  T  S  L  L  F  S  A  N  N  T  R  K  N  L  Q  N  P  H  Q  K  P  S  E  I  T  I  N  S  D  H  N  V  A  N  R  K  S  N  Q  I  *  T  S  L  V  Q  L  R  K  A  T  T  P  N  S  G  E  T  R  P  K  T  P  P  P  S  P  F  L  S  P  F  T  I  L  F  I  L  *  V  F  R  R  N  F  E  L  R  Q  A  A  N  Q  Q  H  Q  E  L  E  I  S  M  T  L  L  S  F  S  H  C  L  Y  K  V  M  L  I  F  R  F  Q  M  L  L  L  L  L  V  V  C  Y  Q  L  G  I  L  K  F  I  F  W  H  L  L  M  F  P  A  </first_frame>
            <second_frame>  E  *  D  F  N  N  F  *  I  K  K  R  V  L  F  T  V  F  P  L  S  G  Q  L  T  A  G  A  P  S  P  K  G  H  H  H  Q  K  V  G  *  N  N  S  Y  F  S  V  K  L  Q  P  A  T  K  S  L  L  N  S  A  S  F  L  H  E  Q  P  T  K  Q  I  H  V  L  L  S  S  S  L  L  R  P  N  I  A  Q  P  K  L  P  F  C  F  Q  P  T  T  P  E  K  T  S  K  T  P  T  K  S  H  R  K  *  P  L  T  P  T  I  T  L  P  I  E  N  P  T  R  F  K  P  H  W  S  S  F  A  K  P  R  R  Q  I  P  A  K  L  D  P  K  P  H  R  P  V  P  F  S  P  P  L  R  F  C  S  S  C  R  Y  S  G  E  T  S  N  S  G  K  L  R  T  N  N  T  K  N  L  K  F  R  *  P  F  S  L  F  H  I  V  C  I  K  L  C  *  F  L  D  S  R  C  Y  C  Y  F  L  L  F  V  I  N  L  G  F  *  S  L  F  F  G  T  C  L  C  F  Q  L </second_frame>
            <third_frame>   N  R  I  L  I  I  F  R  *  K  K  G  F  S  S  L  Y  F  L  F  P  A  S  S  L  P  E  H  H  L  P  K  A  T  T  T  K  K  L  A  R  T  I  H  I  F  R  *  S  S  N  Q  P  L  N  R  C  *  T  Q  P  R  S  F  T  N  S  Q  P  N  R  S  M  S  S  F  L  L  L  F  S  D  Q  T  S  L  N  P  N  F  P  S  V  F  S  Q  Q  H  Q  K  K  P  P  K  P  P  P  K  A  I  G  N  N  H  *  L  R  P  *  R  C  Q  *  K  I  Q  P  D  L  N  L  T  G  P  A  S  Q  S  H  D  A  K  F  R  R  N  *  T  Q  N  P  T  A  Q  S  L  S  L  P  L  Y  D  F  V  H  L  V  G  I  P  A  K  L  R  T  P  A  S  C  E  P  T  T  P  R  T  *  N  F  D  D  P  S  L  F  F  T  L  F  V  *  S  Y  V  D  F  *  I  P  D  V  I  V  T  S  C  C  L  L  S  T  W  D  F  K  V  Y  F  L  A  L  A  Y  V  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63245" stop="63012"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLTPTITLPIENPTRFKPHWSSFAKPRRQIPAKLDPKPHRPVPFSPPLRFCSSCRYSGETSNSGKLRTNNTKNLKFR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63420" stop="63196"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAAKLSLVPSRTANQTDPCPPFFFSSPTKHRSTQTSLLFSANNTRKNLQNPHQKPSEITINSDHNVANRKSNQI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63461" stop="63246"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNSYFSVKLQPATKSLLNSASFLHEQPTKQIHVLLSSSLLRPNIAQPKLPFCFQPTTPEKTSKTPTKSHRK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63081" stop="62875"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFRRNFELRQAANQQHQELEISMTLLSFSHCLYKVMLIFRFQMLLLLLVVCYQLGILKFIFWHLLMFPA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="70265" PGL_stop="69621"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70265" e_stop="69621"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="70265" e_stop="69621" e_length="645"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70265" stop="69621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCAATAAGCCTTTCACTTTAGCATAAAATTGAAATGGCTCGTACCAAGCAAACTGCCCGCAAATCTACTGGTGGAAAGGCTCCAAGGAAGCAACTGGTCCCCAAGTCTGTTTTCAAGTCAGTTCTAACAAGTGGAAGAGTGAAGAAGCCTCACCGTTTTATGCCAGGAACTGTGGCTCTAAGAGAAATCAGGAAGTACCAGAAATCTACTGAGTTGATGATCAGGAAGTTGCCATTCCAGAGGCTGGTTAGGCAAACTGCTCTGGATTTCAAGAGAGATCTGAGGTTCCAGAGCAGTGCTATGACTATTCTATAAGAGGCTGCTGAGGCTTACCTCGTTGGGCTCTTTGAAGATACCAATCTTTGTGCAATTCACGCAAAGAGGGTTACCATCATGCCCAAGGATATTCAGCTTGCTAGAAGGATTCGCGGAGAAAGGGCTTAGAAATCTTTTTTTATGTTTATGATTAATTTGTGTTTTGTATTGGGGTCTTGTTTACTTCTTCTGTTAAATGCTAGTGTCAATCAAATTATGTAAACCTCTGGTTTAGTTCTATTCTGAGATCTGGTTAATGAAATTTATAGTTCATTTTATTTCAATTGAAGATGCTACCCATACTATAATTCAGAGTATATTTTGAGTTA</gDNA_template>
            <first_frame> I  N  K  P  F  T  L  A  *  N  *  N  G  S  Y  Q  A  N  C  P  Q  I  Y  W  W  K  G  S  K  E  A  T  G  P  Q  V  C  F  Q  V  S  S  N  K  W  K  S  E  E  A  S  P  F  Y  A  R  N  C  G  S  K  R  N  Q  E  V  P  E  I  Y  *  V  D  D  Q  E  V  A  I  P  E  A  G  *  A  N  C  S  G  F  Q  E  R  S  E  V  P  E  Q  C  Y  D  Y  S  I  R  G  C  *  G  L  P  R  W  A  L  *  R  Y  Q  S  L  C  N  S  R  K  E  G  Y  H  H  A  Q  G  Y  S  A  C  *  K  D  S  R  R  K  G  L  E  I  F  F  Y  V  Y  D  *  F  V  F  C  I  G  V  L  F  T  S  S  V  K  C  *  C  Q  S  N  Y  V  N  L  W  F  S  S  I  L  R  S  G  *  *  N  L  *  F  I  L  F  Q  L  K  M  L  P  I  L  *  F  R  V  Y  F  E  L </first_frame>
            <second_frame>  S  I  S  L  S  L  *  H  K  I  E  M  A  R  T  K  Q  T  A  R  K  S  T  G  G  K  A  P  R  K  Q  L  V  P  K  S  V  F  K  S  V  L  T  S  G  R  V  K  K  P  H  R  F  M  P  G  T  V  A  L  R  E  I  R  K  Y  Q  K  S  T  E  L  M  I  R  K  L  P  F  Q  R  L  V  R  Q  T  A  L  D  F  K  R  D  L  R  F  Q  S  S  A  M  T  I  L  *  E  A  A  E  A  Y  L  V  G  L  F  E  D  T  N  L  C  A  I  H  A  K  R  V  T  I  M  P  K  D  I  Q  L  A  R  R  I  R  G  E  R  A  *  K  S  F  F  M  F  M  I  N  L  C  F  V  L  G  S  C  L  L  L  L  L  N  A  S  V  N  Q  I  M  *  T  S  G  L  V  L  F  *  D  L  V  N  E  I  Y  S  S  F  Y  F  N  *  R  C  Y  P  Y  Y  N  S  E  Y  I  L  S   </second_frame>
            <third_frame>   Q  *  A  F  H  F  S  I  K  L  K  W  L  V  P  S  K  L  P  A  N  L  L  V  E  R  L  Q  G  S  N  W  S  P  S  L  F  S  S  Q  F  *  Q  V  E  E  *  R  S  L  T  V  L  C  Q  E  L  W  L  *  E  K  S  G  S  T  R  N  L  L  S  *  *  S  G  S  C  H  S  R  G  W  L  G  K  L  L  W  I  S  R  E  I  *  G  S  R  A  V  L  *  L  F  Y  K  R  L  L  R  L  T  S  L  G  S  L  K  I  P  I  F  V  Q  F  T  Q  R  G  L  P  S  C  P  R  I  F  S  L  L  E  G  F  A  E  K  G  L  R  N  L  F  L  C  L  *  L  I  C  V  L  Y  W  G  L  V  Y  F  F  C  *  M  L  V  S  I  K  L  C  K  P  L  V  *  F  Y  S  E  I  W  L  M  K  F  I  V  H  F  I  S  I  E  D  A  T  H  T  I  I  Q  S  I  F  *  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70243" stop="69950"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HKIEMARTKQTARKSTGGKAPRKQLVPKSVFKSVLTSGRVKKPHRFMPGTVALREIRKYQKSTELMIRKLPFQRLVRQTALDFKRDLRFQSSAMTIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="77998" PGL_stop="75086"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77998" e_stop="77875"/>
            <exon e_start="76460" e_stop="76449"/>
            <exon e_start="75649" e_stop="75086"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.772" e_score="0.895"/>
          <exon-intron don_prob="0.000" acc_prob="0.693" e_score="0.583"/>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.895">
            <gDNA_exon_boundary e_start="77998" e_stop="77875" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.772">
            <gDNA_intron_boundary i_start="77874" i_stop="76461" i_length="1414"/>
          </intron>
          <exon e_serial="2" e_score="0.583">
            <gDNA_exon_boundary e_start="76460" e_stop="76449" e_length="12"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.693">
            <gDNA_intron_boundary i_start="76448" i_stop="75650" i_length="799"/>
          </intron>
          <exon e_serial="3" e_score="0.902">
            <gDNA_exon_boundary e_start="75649" e_stop="75086" e_length="564"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77998" stop="77875"/>
              <exon start="76460" stop="76449"/>
              <exon start="75649" stop="75086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343276" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATATAATATTTTAAATTCCAGTGTTCCCTTATTTAGTCTTTGGAAATTAGATTTGGAGCTTCAAAATTCAATTTTCAACTTTCCACGTTCGGCTTTCGGCGGTCATAAACGTCTACTTTTCG : AGATGACGTACG : AACCTACTGAAGATATTCTCCAATGGTGGAGAAATCGCGGCAAAGGATTTCCAAAACTAGTACCGATGGCTCGAGATATATTAGCAATGCAAGCGTCGTCGGTAGCTTCGGAAGGCGTCTTTAGTACATCAAGGTTCAACTTGGAGAACATAGGCATTCGCTAGCAGCCGACAACTTGGAGATATCTGTATTATTTCGATATTGGATTAATGTCGAGAGAAGAAATTTGGGTCGTGAACCACTACCGACCAAATTTCAAGATGACGTTGATGAAGTAATGCAGGATTATAGTTACAACGGGATTGAAGCAATGGAAGATCTTTTTATTCAACCAATTCCCGAACATGTTACTAAAGAAATTTTGAATGATTTATGAAGGGATTTATATGGTGGCACCAACTATTAGTAAAAGTATGATAATTCAAGATTTAATTCAAACAGAACTCTTCCTAGAAGGTGGTTGTGTAGATTAAATCTTTTAATACTTTATTAATATTTTTGTAAATGTAATTATAATATCAAATAAATATTAATAAAGATTGCTATTCGCCTTAATTTGTTTTT</gDNA_template>
            <first_frame> I  Y  N  I  L  N  S  S  V  P  L  F  S  L  W  K  L  D  L  E  L  Q  N  S  I  F  N  F  P  R  S  A  F  G  G  H  K  R  L  L  F   : E  M  T  Y   : E  P  T  E  D  I  L  Q  W  W  R  N  R  G  K  G  F  P  K  L  V  P  M  A  R  D  I  L  A  M  Q  A  S  S  V  A  S  E  G  V  F  S  T  S  R  F  N  L  E  N  I  G  I  R  *  Q  P  T  T  W  R  Y  L  Y  Y  F  D  I  G  L  M  S  R  E  E  I  W  V  V  N  H  Y  R  P  N  F  K  M  T  L  M  K  *  C  R  I  I  V  T  T  G  L  K  Q  W  K  I  F  L  F  N  Q  F  P  N  M  L  L  K  K  F  *  M  I  Y  E  G  I  Y  M  V  A  P  T  I  S  K  S  M  I  I  Q  D  L  I  Q  T  E  L  F  L  E  G  G  C  V  D  *  I  F  *  Y  F  I  N  I  F  V  N  V  I  I  I  S  N  K  Y  *  *  R  L  L  F  A  L  I  C  F  </first_frame>
            <second_frame>  Y  I  I  F  *  I  P  V  F  P  Y  L  V  F  G  N  *  I  W  S  F  K  I  Q  F  S  T  F  H  V  R  L  S  A  V  I  N  V  Y  F  S  :  R  *  R  T  :  N  L  L  K  I  F  S  N  G  G  E  I  A  A  K  D  F  Q  N  *  Y  R  W  L  E  I  Y  *  Q  C  K  R  R  R  *  L  R  K  A  S  L  V  H  Q  G  S  T  W  R  T  *  A  F  A  S  S  R  Q  L  G  D  I  C  I  I  S  I  L  D  *  C  R  E  K  K  F  G  S  *  T  T  T  D  Q  I  S  R  *  R  *  *  S  N  A  G  L  *  L  Q  R  D  *  S  N  G  R  S  F  Y  S  T  N  S  R  T  C  Y  *  R  N  F  E  *  F  M  K  G  F  I  W  W  H  Q  L  L  V  K  V  *  *  F  K  I  *  F  K  Q  N  S  S  *  K  V  V  V  *  I  K  S  F  N  T  L  L  I  F  L  *  M  *  L  *  Y  Q  I  N  I  N  K  D  C  Y  S  P  *  F  V  F </second_frame>
            <third_frame>   I  *  Y  F  K  F  Q  C  S  L  I  *  S  L  E  I  R  F  G  A  S  K  F  N  F  Q  L  S  T  F  G  F  R  R  S  *  T  S  T  F  R :   D  D  V  R :   T  Y  *  R  Y  S  P  M  V  E  K  S  R  Q  R  I  S  K  T  S  T  D  G  S  R  Y  I  S  N  A  S  V  V  G  S  F  G  R  R  L  *  Y  I  K  V  Q  L  G  E  H  R  H  S  L  A  A  D  N  L  E  I  S  V  L  F  R  Y  W  I  N  V  E  R  R  N  L  G  R  E  P  L  P  T  K  F  Q  D  D  V  D  E  V  M  Q  D  Y  S  Y  N  G  I  E  A  M  E  D  L  F  I  Q  P  I  P  E  H  V  T  K  E  I  L  N  D  L  *  R  D  L  Y  G  G  T  N  Y  *  *  K  Y  D  N  S  R  F  N  S  N  R  T  L  P  R  R  W  L  C  R  L  N  L  L  I  L  Y  *  Y  F  C  K  C  N  Y  N  I  K  *  I  L  I  K  I  A  I  R  L  N  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77998" stop="77875"/>
                    <exon start="76460" stop="76449"/>
                    <exon start="75649" stop="75486"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYNILNSSVPLFSLWKLDLELQNSIFNFPRSAFGGHKRLLFEMTYEPTEDILQWWRNRGKGFPKLVPMARDILAMQASSVASEGVFSTSRFNLENIGIR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75525" stop="75274"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YIKVQLGEHRHSLAADNLEISVLFRYWINVERRNLGREPLPTKFQDDVDEVMQDYSYNGIEAMEDLFIQPIPEHVTKEILNDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="92658" PGL_stop="97920"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92658" e_stop="92735"/>
            <exon e_start="93253" e_stop="93381"/>
            <exon e_start="94175" e_stop="94324"/>
            <exon e_start="94423" e_stop="94491"/>
            <exon e_start="95729" e_stop="95887"/>
            <exon e_start="96037" e_stop="96093"/>
            <exon e_start="96178" e_stop="96218"/>
            <exon e_start="96368" e_stop="96487"/>
            <exon e_start="96627" e_stop="96936"/>
            <exon e_start="97021" e_stop="97200"/>
            <exon e_start="97581" e_stop="97920"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.897"/>
          <exon-intron don_prob="0.307" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.869" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.897">
            <gDNA_exon_boundary e_start="92658" e_stop="92735" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92736" i_stop="93252" i_length="517"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93253" e_stop="93381" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.307" acc_prob="0.999">
            <gDNA_intron_boundary i_start="93382" i_stop="94174" i_length="793"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94175" e_stop="94324" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="94325" i_stop="94422" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="94423" e_stop="94491" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="0.996">
            <gDNA_intron_boundary i_start="94492" i_stop="95728" i_length="1237"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="95729" e_stop="95887" e_length="159"/>
          </exon>
          <intron i_serial="5" don_prob="0.960" acc_prob="0.869">
            <gDNA_intron_boundary i_start="95888" i_stop="96036" i_length="149"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="96037" e_stop="96093" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="96094" i_stop="96177" i_length="84"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="96178" e_stop="96218" e_length="41"/>
          </exon>
          <intron i_serial="7" don_prob="0.927" acc_prob="0.999">
            <gDNA_intron_boundary i_start="96219" i_stop="96367" i_length="149"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="96368" e_stop="96487" e_length="120"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.968">
            <gDNA_intron_boundary i_start="96488" i_stop="96626" i_length="139"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="96627" e_stop="96936" e_length="310"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="96937" i_stop="97020" i_length="84"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="97021" e_stop="97200" e_length="180"/>
          </exon>
          <intron i_serial="10" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="97201" i_stop="97580" i_length="380"/>
          </intron>
          <exon e_serial="11" e_score="0.938">
            <gDNA_exon_boundary e_start="97581" e_stop="97920" e_length="340"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92658" stop="92735"/>
              <exon start="93253" stop="93381"/>
              <exon start="94175" stop="94324"/>
              <exon start="94423" stop="94491"/>
              <exon start="95729" stop="95887"/>
              <exon start="96037" stop="96093"/>
              <exon start="96178" stop="96218"/>
              <exon start="96368" stop="96487"/>
              <exon start="96627" stop="96936"/>
              <exon start="97021" stop="97200"/>
              <exon start="97581" stop="97920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323724" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAACTAGGAACTTGCCTCATTTATGGGATCTTTGTTCCAACGAGATTCTTGTCAGATGTGCAAAGCACATCCTCAAG : GATTTGCTGAGGGATGCTGAGGACCATGATCTTGCAAACACAATCTCACATTTTTACAACTGTTTGTTTGGAAATATGCAAACAGTATCTAATAAAGGCGGCGCCAACAGTTCTAGAAACCAAAAGAAG : GACCACGTTGGGAACCAGCAAAAGTCATCCAAGGGACAGGGAAAGCGAAAAAATGTAGGATCTGCCAAGAAGAAACAGTCCTCCTATTTGAGTATCACGTCTGACAGTTTGTGGTCTGACATCCAAGAATTTGCGAAACTCAAGTATCAG : TTTGAGTTGCCTGACGATGCAAAAATGCTGGTAAAGAAAATTCCAGTTGTACGCAATCTCTGTCAGAAG : GTAGGTGTAACCGTTGCAGCTCGTAAATATGACCTTGACTCTGTTGCACCTTTTCAAGCATCAGATATTATGAATCTCCAACCAGTGGTGAAGCATTCTATCCCAGTTAGTTCAGAAGCTAAGGACCTTGTTGAAACAGGAAAGGCTCAATTAGCTGAG : GGTTTGCTTAGTGAGGCCTACACTTTATTTTCCGAAGCATTCACAATACTTCAGCAG : GTGACGGGTCCGATGCACCGGGAAGTTGCCAATTGTTGTCG : CTACCTTGCTATGGTTCTATATCATGCTGGAGATATGGCTGGTGCTATAATGCAACAGCACAAGGAACTTATCATAAATGAAAGATGCCTTGGACTGGACCATCCTGACACTGCACACAG : TTATGGAAACATGGCTCTTTTCTATCATGGTCTTAACCAAACAGAACTTGCATTGAGGCATATGTCACGGGCCTTGCTTCTTCTTGGCTTGTCATCAGGTCCTGATCATCCGGATGTTGCCGCAACATTTATAAATGTTGCAATGATGTACCAAGATATTGGGAAGATGGATACAGCACTTCGTTATCTCCAAGAAGCATTGAAAAAGAATGAACGGTTGCTTGGGGAGGAACATATTCAGACTGCTGTTTGTTATCATGCTCTGGCAATTGCGTTCAACTGTATGGGTGCTTTCAAGCTTTCGCACCAG : CATGAAAAGAAAACTTATGATATACTAGCCAAACAGCTGGGAGAGGAGGATTCAAGGACACGCGATTCTCAGAACTGGATGAAAACATTTAAGATGCGTGAGCTGCAGATGAATGCACAAAAGCAGAAAGGTCAATCTCTGAATGTGGCTTCTGCACAGAAGGCTTATGATATTTTAAAG : GCTCATCCAAGCTTGTTACACGCATTTCAAGCTGCCGCTGGAGGTACTGGTATTGGTGGAATGAACCAATCATTAAGTTCTGCAGTACTTGGTGATGGGCTTCCTCGGGGAAGAGGAGTTGATGAAAGAGCTGCACGAGCTGCTGCTGAAGTACGGAAAAAAGCTGCAGCAAGGGGTCTTCTTGTACGTCCCAGTGGTGTTCCTGCATCATCTTTACCTCCTCTTACCCAGCTACTCAATGTAATAAATTCTGGCACAACACCGGATGCTGCAAATCCTAGTGGAACTAATGAAGAAAAGAAAGAAGCAAACAGTAATTCTTCTAATGGATCTGGAGATG</gDNA_template>
            <first_frame> G  T  R  N  L  P  H  L  W  D  L  C  S  N  E  I  L  V  R  C  A  K  H  I  L  K  :  D  L  L  R  D  A  E  D  H  D  L  A  N  T  I  S  H  F  Y  N  C  L  F  G  N  M  Q  T  V  S  N  K  G  G  A  N  S  S  R  N  Q  K  K  :  D  H  V  G  N  Q  Q  K  S  S  K  G  Q  G  K  R  K  N  V  G  S  A  K  K  K  Q  S  S  Y  L  S  I  T  S  D  S  L  W  S  D  I  Q  E  F  A  K  L  K  Y  Q  :  F  E  L  P  D  D  A  K  M  L  V  K  K  I  P  V  V  R  N  L  C  Q  K  :  V  G  V  T  V  A  A  R  K  Y  D  L  D  S  V  A  P  F  Q  A  S  D  I  M  N  L  Q  P  V  V  K  H  S  I  P  V  S  S  E  A  K  D  L  V  E  T  G  K  A  Q  L  A  E  :  G  L  L  S  E  A  Y  T  L  F  S  E  A  F  T  I  L  Q  Q  :  V  T  G  P  M  H  R  E  V  A  N  C  C  R :   Y  L  A  M  V  L  Y  H  A  G  D  M  A  G  A  I  M  Q  Q  H  K  E  L  I  I  N  E  R  C  L  G  L  D  H  P  D  T  A  H  S :   Y  G  N  M  A  L  F  Y  H  G  L  N  Q  T  E  L  A  L  R  H  M  S  R  A  L  L  L  L  G  L  S  S  G  P  D  H  P  D  V  A  A  T  F  I  N  V  A  M  M  Y  Q  D  I  G  K  M  D  T  A  L  R  Y  L  Q  E  A  L  K  K  N  E  R  L  L  G  E  E  H  I  Q  T  A  V  C  Y  H  A  L  A  I  A  F  N  C  M  G  A  F  K  L  S  H  Q  :  H  E  K  K  T  Y  D  I  L  A  K  Q  L  G  E  E  D  S  R  T  R  D  S  Q  N  W  M  K  T  F  K  M  R  E  L  Q  M  N  A  Q  K  Q  K  G  Q  S  L  N  V  A  S  A  Q  K  A  Y  D  I  L  K  :  A  H  P  S  L  L  H  A  F  Q  A  A  A  G  G  T  G  I  G  G  M  N  Q  S  L  S  S  A  V  L  G  D  G  L  P  R  G  R  G  V  D  E  R  A  A  R  A  A  A  E  V  R  K  K  A  A  A  R  G  L  L  V  R  P  S  G  V  P  A  S  S  L  P  P  L  T  Q  L  L  N  V  I  N  S  G  T  T  P  D  A  A  N  P  S  G  T  N  E  E  K  K  E  A  N  S  N  S  S  N  G  S  G  D  </first_frame>
            <second_frame>  E  L  G  T  C  L  I  Y  G  I  F  V  P  T  R  F  L  S  D  V  Q  S  T  S  S  R :   I  C  *  G  M  L  R  T  M  I  L  Q  T  Q  S  H  I  F  T  T  V  C  L  E  I  C  K  Q  Y  L  I  K  A  A  P  T  V  L  E  T  K  R  R :   T  T  L  G  T  S  K  S  H  P  R  D  R  E  S  E  K  M  *  D  L  P  R  R  N  S  P  P  I  *  V  S  R  L  T  V  C  G  L  T  S  K  N  L  R  N  S  S  I  S :   L  S  C  L  T  M  Q  K  C  W  *  R  K  F  Q  L  Y  A  I  S  V  R  R :   *  V  *  P  L  Q  L  V  N  M  T  L  T  L  L  H  L  F  K  H  Q  I  L  *  I  S  N  Q  W  *  S  I  L  S  Q  L  V  Q  K  L  R  T  L  L  K  Q  E  R  L  N  *  L  R :   V  C  L  V  R  P  T  L  Y  F  P  K  H  S  Q  Y  F  S  R :   *  R  V  R  C  T  G  K  L  P  I  V  V   : A  T  L  L  W  F  Y  I  M  L  E  I  W  L  V  L  *  C  N  S  T  R  N  L  S  *  M  K  D  A  L  D  W  T  I  L  T  L  H  T   : V  M  E  T  W  L  F  S  I  M  V  L  T  K  Q  N  L  H  *  G  I  C  H  G  P  C  F  F  L  A  C  H  Q  V  L  I  I  R  M  L  P  Q  H  L  *  M  L  Q  *  C  T  K  I  L  G  R  W  I  Q  H  F  V  I  S  K  K  H  *  K  R  M  N  G  C  L  G  R  N  I  F  R  L  L  F  V  I  M  L  W  Q  L  R  S  T  V  W  V  L  S  S  F  R  T  S :   M  K  R  K  L  M  I  Y  *  P  N  S  W  E  R  R  I  Q  G  H  A  I  L  R  T  G  *  K  H  L  R  C  V  S  C  R  *  M  H  K  S  R  K  V  N  L  *  M  W  L  L  H  R  R  L  M  I  F  *  R :   L  I  Q  A  C  Y  T  H  F  K  L  P  L  E  V  L  V  L  V  E  *  T  N  H  *  V  L  Q  Y  L  V  M  G  F  L  G  E  E  E  L  M  K  E  L  H  E  L  L  L  K  Y  G  K  K  L  Q  Q  G  V  F  L  Y  V  P  V  V  F  L  H  H  L  Y  L  L  L  P  S  Y  S  M  *  *  I  L  A  Q  H  R  M  L  Q  I  L  V  E  L  M  K  K  R  K  K  Q  T  V  I  L  L  M  D  L  E  M </second_frame>
            <third_frame>   N  *  E  L  A  S  F  M  G  S  L  F  Q  R  D  S  C  Q  M  C  K  A  H  P  Q   : G  F  A  E  G  C  *  G  P  *  S  C  K  H  N  L  T  F  L  Q  L  F  V  W  K  Y  A  N  S  I  *  *  R  R  R  Q  Q  F  *  K  P  K  E   : G  P  R  W  E  P  A  K  V  I  Q  G  T  G  K  A  K  K  C  R  I  C  Q  E  E  T  V  L  L  F  E  Y  H  V  *  Q  F  V  V  *  H  P  R  I  C  E  T  Q  V  S   : V  *  V  A  *  R  C  K  N  A  G  K  E  N  S  S  C  T  Q  S  L  S  E   : G  R  C  N  R  C  S  S  *  I  *  P  *  L  C  C  T  F  S  S  I  R  Y  Y  E  S  P  T  S  G  E  A  F  Y  P  S  *  F  R  S  *  G  P  C  *  N  R  K  G  S  I  S  *   : G  F  A  *  *  G  L  H  F  I  F  R  S  I  H  N  T  S  A   : G  D  G  S  D  A  P  G  S  C  Q  L  L  S  :  L  P  C  Y  G  S  I  S  C  W  R  Y  G  W  C  Y  N  A  T  A  Q  G  T  Y  H  K  *  K  M  P  W  T  G  P  S  *  H  C  T  Q  :  L  W  K  H  G  S  F  L  S  W  S  *  P  N  R  T  C  I  E  A  Y  V  T  G  L  A  S  S  W  L  V  I  R  S  *  S  S  G  C  C  R  N  I  Y  K  C  C  N  D  V  P  R  Y  W  E  D  G  Y  S  T  S  L  S  P  R  S  I  E  K  E  *  T  V  A  W  G  G  T  Y  S  D  C  C  L  L  S  C  S  G  N  C  V  Q  L  Y  G  C  F  Q  A  F  A  P   : A  *  K  E  N  L  *  Y  T  S  Q  T  A  G  R  G  G  F  K  D  T  R  F  S  E  L  D  E  N  I  *  D  A  *  A  A  D  E  C  T  K  A  E  R  S  I  S  E  C  G  F  C  T  E  G  L  *  Y  F  K   : G  S  S  K  L  V  T  R  I  S  S  C  R  W  R  Y  W  Y  W  W  N  E  P  I  I  K  F  C  S  T  W  *  W  A  S  S  G  K  R  S  *  *  K  S  C  T  S  C  C  *  S  T  E  K  S  C  S  K  G  S  S  C  T  S  Q  W  C  S  C  I  I  F  T  S  S  Y  P  A  T  Q  C  N  K  F  W  H  N  T  G  C  C  K  S  *  W  N  *  *  R  K  E  R  S  K  Q  *  F  F  *  W  I  W  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92658" stop="92735"/>
                    <exon start="93253" stop="93381"/>
                    <exon start="94175" stop="94324"/>
                    <exon start="94423" stop="94491"/>
                    <exon start="95729" stop="95887"/>
                    <exon start="96037" stop="96093"/>
                    <exon start="96178" stop="96218"/>
                    <exon start="96368" stop="96487"/>
                    <exon start="96627" stop="96936"/>
                    <exon start="97021" stop="97200"/>
                    <exon start="97581" stop="97919"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1632</number_coding_nucleotides>
                  <number_encoded_amino_acids>544</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTRNLPHLWDLCSNEILVRCAKHILKDLLRDAEDHDLANTISHFYNCLFGNMQTVSNKGGANSSRNQKKDHVGNQQKSSKGQGKRKNVGSAKKKQSSYLSITSDSLWSDIQEFAKLKYQFELPDDAKMLVKKIPVVRNLCQKVGVTVAARKYDLDSVAPFQASDIMNLQPVVKHSIPVSSEAKDLVETGKAQLAEGLLSEAYTLFSEAFTILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLGLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILAKQLGEEDSRTRDSQNWMKTFKMRELQMNAQKQKGQSLNVASAQKAYDILKAHPSLLHAFQAAAGGTGIGGMNQSLSSAVLGDGLPRGRGVDERAARAAAEVRKKAAARGLLVRPSGVPASSLPPLTQLLNVINSGTTPDAANPSGTNEEKKEANSNSSNGSGD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="98528" PGL_stop="97851"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98528" e_stop="97851"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="98528" e_stop="97851" e_length="678"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98528" stop="97851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331527" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGTCACCTTAATACAGAAAAACGCTTTCATTCCAACGATAAATAAGTAACAAAACAGAAAGTCTAACTTTAACCAGAAACGATAAAGTGTCCAAGAAAGAGCACCTTTCAACTGAAATGGGTGGGCAGCTTCACTCACGAGGTAATGGGAATGAATAAAGGTCAAAAATTTTAGGATGACATCAACACCCAAAACAGATGATGGACCTCTCTACTTAACATTATTCAAAACACCAAAATAATGCATACTAAACCTATCTTCTCAAAACTAGGCCTACAAGTTATGTCATCTCAGCAATAATAATCAAGATGAGAGGAACTACAGCTCGAATACTTAAATCTCCATGAGACTTATTGTAAGAATGGAATAGAAGTATAAGCGTTCACCCGTGCAGTGAGTACCTGAAGCATGAGGTGGCTGCAAGCGAAAATCCATGATATGCTAGAACTGGCCATTGACATGTTTGTTAGTACATTCCGCAATATACACTTCAAGATGCAGCTTTCACTTTTGATTTTTGCTTCTTGGTATCCAACGCCCCCAAACCTGTCCCTAAACCAACAGGAGTTTGATCTTGTTCCCCTGCTTTGGATAAGTCTGCTTGGGCATCTCCAGATCCATTAGAAGAATTACTGTTTGCTTCTTTCTTTTCTTCATTAGTTCCACTAGGATTTGC</gDNA_template>
            <first_frame> *  V  T  L  I  Q  K  N  A  F  I  P  T  I  N  K  *  Q  N  R  K  S  N  F  N  Q  K  R  *  S  V  Q  E  R  A  P  F  N  *  N  G  W  A  A  S  L  T  R  *  W  E  *  I  K  V  K  N  F  R  M  T  S  T  P  K  T  D  D  G  P  L  Y  L  T  L  F  K  T  P  K  *  C  I  L  N  L  S  S  Q  N  *  A  Y  K  L  C  H  L  S  N  N  N  Q  D  E  R  N  Y  S  S  N  T  *  I  S  M  R  L  I  V  R  M  E  *  K  Y  K  R  S  P  V  Q  *  V  P  E  A  *  G  G  C  K  R  K  S  M  I  C  *  N  W  P  L  T  C  L  L  V  H  S  A  I  Y  T  S  R  C  S  F  H  F  *  F  L  L  L  G  I  Q  R  P  Q  T  C  P  *  T  N  R  S  L  I  L  F  P  C  F  G  *  V  C  L  G  I  S  R  S  I  R  R  I  T  V  C  F  F  L  F  F  I  S  S  T  R  I  C </first_frame>
            <second_frame>  K  S  P  *  Y  R  K  T  L  S  F  Q  R  *  I  S  N  K  T  E  S  L  T  L  T  R  N  D  K  V  S  K  K  E  H  L  S  T  E  M  G  G  Q  L  H  S  R  G  N  G  N  E  *  R  S  K  I  L  G  *  H  Q  H  P  K  Q  M  M  D  L  S  T  *  H  Y  S  K  H  Q  N  N  A  Y  *  T  Y  L  L  K  T  R  P  T  S  Y  V  I  S  A  I  I  I  K  M  R  G  T  T  A  R  I  L  K  S  P  *  D  L  L  *  E  W  N  R  S  I  S  V  H  P  C  S  E  Y  L  K  H  E  V  A  A  S  E  N  P  *  Y  A  R  T  G  H  *  H  V  C  *  Y  I  P  Q  Y  T  L  Q  D  A  A  F  T  F  D  F  C  F  L  V  S  N  A  P  K  P  V  P  K  P  T  G  V  *  S  C  S  P  A  L  D  K  S  A  W  A  S  P  D  P  L  E  E  L  L  F  A  S  F  F  S  S  L  V  P  L  G  F   </second_frame>
            <third_frame>   S  H  L  N  T  E  K  R  F  H  S  N  D  K  *  V  T  K  Q  K  V  *  L  *  P  E  T  I  K  C  P  R  K  S  T  F  Q  L  K  W  V  G  S  F  T  H  E  V  M  G  M  N  K  G  Q  K  F  *  D  D  I  N  T  Q  N  R  *  W  T  S  L  L  N  I  I  Q  N  T  K  I  M  H  T  K  P  I  F  S  K  L  G  L  Q  V  M  S  S  Q  Q  *  *  S  R  *  E  E  L  Q  L  E  Y  L  N  L  H  E  T  Y  C  K  N  G  I  E  V  *  A  F  T  R  A  V  S  T  *  S  M  R  W  L  Q  A  K  I  H  D  M  L  E  L  A  I  D  M  F  V  S  T  F  R  N  I  H  F  K  M  Q  L  S  L  L  I  F  A  S  W  Y  P  T  P  P  N  L  S  L  N  Q  Q  E  F  D  L  V  P  L  L  W  I  S  L  L  G  H  L  Q  I  H  *  K  N  Y  C  L  L  L  S  F  L  H  *  F  H  *  D  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98121" stop="97903"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMRWLQAKIHDMLELAIDMFVSTFRNIHFKMQLSLLIFASWYPTPPNLSLNQQEFDLVPLLWISLLGHLQIH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="101999" PGL_stop="101489"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101999" e_stop="101489"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101999" e_stop="101489" e_length="511"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101999" stop="101489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327293" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCAATTGATTGAAGAGTTTGCCAAGGAGGAGCAAGGGGAGTATGATAAAGGGGCCGCAGCAGGAGCCTCGAGGTGAGGGCATGGCACAGTGCTTACAAGGTAGGTTAGGGGATATAGGTTTGAGTCAAAAGTGTGTACTATGACGTATTCTTTCTCTCATGAGCTGGGGAACTTAGCCAGAGCAATTTTGGGGTTTGGTCATTACCATTTTATCAGTTTCCTTTACATTCGAGCGAGGATTTAATTGTTGCTTGATGGAGGAGGGGACAGGTTGGTTATAGTATTATTATTGTGACATTGAGATAATGTAGCACTTGATCTGCAACTTAGTGTTGTATATAAATATGATGAAACAAATAAATGTTTCTCAAGGGAAGTGGAATGTTACCTGCCATTCATCCTTTTTTTTTGCACTTATTGAATAGAATAACAGAACTGGACGATTCTGAACCGAGTAGTAGACTCGATTAAGCTATGTAATATCACTTTTTTAGAAGAGTTTGAAGCCTT</gDNA_template>
            <first_frame> V  N  *  L  K  S  L  P  R  R  S  K  G  S  M  I  K  G  P  Q  Q  E  P  R  G  E  G  M  A  Q  C  L  Q  G  R  L  G  D  I  G  L  S  Q  K  C  V  L  *  R  I  L  S  L  M  S  W  G  T  *  P  E  Q  F  W  G  L  V  I  T  I  L  S  V  S  F  T  F  E  R  G  F  N  C  C  L  M  E  E  G  T  G  W  L  *  Y  Y  Y  C  D  I  E  I  M  *  H  L  I  C  N  L  V  L  Y  I  N  M  M  K  Q  I  N  V  S  Q  G  K  W  N  V  T  C  H  S  S  F  F  F  A  L  I  E  *  N  N  R  T  G  R  F  *  T  E  *  *  T  R  L  S  Y  V  I  S  L  F  *  K  S  L  K  P  </first_frame>
            <second_frame>  S  I  D  *  R  V  C  Q  G  G  A  R  G  V  *  *  R  G  R  S  R  S  L  E  V  R  A  W  H  S  A  Y  K  V  G  *  G  I  *  V  *  V  K  S  V  Y  Y  D  V  F  F  L  S  *  A  G  E  L  S  Q  S  N  F  G  V  W  S  L  P  F  Y  Q  F  P  L  H  S  S  E  D  L  I  V  A  *  W  R  R  G  Q  V  G  Y  S  I  I  I  V  T  L  R  *  C  S  T  *  S  A  T  *  C  C  I  *  I  *  *  N  K  *  M  F  L  K  G  S  G  M  L  P  A  I  H  P  F  F  L  H  L  L  N  R  I  T  E  L  D  D  S  E  P  S  S  R  L  D  *  A  M  *  Y  H  F  F  R  R  V  *  S  L </second_frame>
            <third_frame>   Q  L  I  E  E  F  A  K  E  E  Q  G  E  Y  D  K  G  A  A  A  G  A  S  R  *  G  H  G  T  V  L  T  R  *  V  R  G  Y  R  F  E  S  K  V  C  T  M  T  Y  S  F  S  H  E  L  G  N  L  A  R  A  I  L  G  F  G  H  Y  H  F  I  S  F  L  Y  I  R  A  R  I  *  L  L  L  D  G  G  G  D  R  L  V  I  V  L  L  L  *  H  *  D  N  V  A  L  D  L  Q  L  S  V  V  Y  K  Y  D  E  T  N  K  C  F  S  R  E  V  E  C  Y  L  P  F  I  L  F  F  C  T  Y  *  I  E  *  Q  N  W  T  I  L  N  R  V  V  D  S  I  K  L  C  N  I  T  F  L  E  E  F  E  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0323C14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="112133" PGL_stop="112912"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112133" e_stop="112912"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="112133" e_stop="112912" e_length="780"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112133" stop="112912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321672" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTATGAATTTTGAAACCTTTTTTATAGTATTTATTTACTCTTGATTCCGAATAAAATAGATATCAAATATGAATGTTTATCTTTATCAACTAAAACTAGACTATAGTTGATCAGATTTTATCGAATTTTAATACAAATAACAAATATTAAACAGGAAAGTAAAGACTGAACTGTTTGATATTTTTTTCCATATATATAAGGAGAAAGAAATAACAATATTGTTAAGCACTACTACTAGAGGAAATTGAAAAAATGCAAAGATGTAGCAGTACTTCATGAGTTAATTAGCAACCTAAAAACAAAAGTTCAAGCTACTTTTGCCAATTACAATAGAAGCTTCACTGCCCAAATGAATTTACCAATGTATATACACACAAAAATGCTTTTATATACACTATATAATTTTTCGACGAGACAGATAACTGCTTGTACCATTTTCATGTTTATCACCACACACCAACGTCCTGGCGCTCGCATAGTCCAATCATATCAGCAGTTTTCATCAGCATATCTCGTCCAAATGATCTCGATATCCCTAATTTGATCAGATGATATGAACAATCTCTCAACATCCTGCGATGAATTCGAAGTTTTGAGTACTGCTAAAGAATTATCCTTCAATACTTCATCATCTTCTGGTGCTAGCAAATAAATGCCAATAAACACAGAAATCATTCCAAAAACGAACATGGTTGTTCTTAAAGCATCAAACACCTTGTATTCCTCAAAGTAGACAAATCCAGTACAGATTGAGAAAAACGTCCAAGCGATTTGAAACA</gDNA_template>
            <first_frame> C  M  N  F  E  T  F  F  I  V  F  I  Y  S  *  F  R  I  K  *  I  S  N  M  N  V  Y  L  Y  Q  L  K  L  D  Y  S  *  S  D  F  I  E  F  *  Y  K  *  Q  I  L  N  R  K  V  K  T  E  L  F  D  I  F  F  H  I  Y  K  E  K  E  I  T  I  L  L  S  T  T  T  R  G  N  *  K  N  A  K  M  *  Q  Y  F  M  S  *  L  A  T  *  K  Q  K  F  K  L  L  L  P  I  T  I  E  A  S  L  P  K  *  I  Y  Q  C  I  Y  T  Q  K  C  F  Y  I  H  Y  I  I  F  R  R  D  R  *  L  L  V  P  F  S  C  L  S  P  H  T  N  V  L  A  L  A  *  S  N  H  I  S  S  F  H  Q  H  I  S  S  K  *  S  R  Y  P  *  F  D  Q  M  I  *  T  I  S  Q  H  P  A  M  N  S  K  F  *  V  L  L  K  N  Y  P  S  I  L  H  H  L  L  V  L  A  N  K  C  Q  *  T  Q  K  S  F  Q  K  R  T  W  L  F  L  K  H  Q  T  P  C  I  P  Q  S  R  Q  I  Q  Y  R  L  R  K  T  S  K  R  F  E  T </first_frame>
            <second_frame>  V  *  I  L  K  P  F  L  *  Y  L  F  T  L  D  S  E  *  N  R  Y  Q  I  *  M  F  I  F  I  N  *  N  *  T  I  V  D  Q  I  L  S  N  F  N  T  N  N  K  Y  *  T  G  K  *  R  L  N  C  L  I  F  F  S  I  Y  I  R  R  K  K  *  Q  Y  C  *  A  L  L  L  E  E  I  E  K  M  Q  R  C  S  S  T  S  *  V  N  *  Q  P  K  N  K  S  S  S  Y  F  C  Q  L  Q  *  K  L  H  C  P  N  E  F  T  N  V  Y  T  H  K  N  A  F  I  Y  T  I  *  F  F  D  E  T  D  N  C  L  Y  H  F  H  V  Y  H  H  T  P  T  S  W  R  S  H  S  P  I  I  S  A  V  F  I  S  I  S  R  P  N  D  L  D  I  P  N  L  I  R  *  Y  E  Q  S  L  N  I  L  R  *  I  R  S  F  E  Y  C  *  R  I  I  L  Q  Y  F  I  I  F  W  C  *  Q  I  N  A  N  K  H  R  N  H  S  K  N  E  H  G  C  S  *  S  I  K  H  L  V  F  L  K  V  D  K  S  S  T  D  *  E  K  R  P  S  D  L  K   </second_frame>
            <third_frame>   Y  E  F  *  N  L  F  Y  S  I  Y  L  L  L  I  P  N  K  I  D  I  K  Y  E  C  L  S  L  S  T  K  T  R  L  *  L  I  R  F  Y  R  I  L  I  Q  I  T  N  I  K  Q  E  S  K  D  *  T  V  *  Y  F  F  P  Y  I  *  G  E  R  N  N  N  I  V  K  H  Y  Y  *  R  K  L  K  K  C  K  D  V  A  V  L  H  E  L  I  S  N  L  K  T  K  V  Q  A  T  F  A  N  Y  N  R  S  F  T  A  Q  M  N  L  P  M  Y  I  H  T  K  M  L  L  Y  T  L  Y  N  F  S  T  R  Q  I  T  A  C  T  I  F  M  F  I  T  T  H  Q  R  P  G  A  R  I  V  Q  S  Y  Q  Q  F  S  S  A  Y  L  V  Q  M  I  S  I  S  L  I  *  S  D  D  M  N  N  L  S  T  S  C  D  E  F  E  V  L  S  T  A  K  E  L  S  F  N  T  S  S  S  S  G  A  S  K  *  M  P  I  N  T  E  I  I  P  K  T  N  M  V  V  L  K  A  S  N  T  L  Y  S  S  K  *  T  N  P  V  Q  I  E  K  N  V  Q  A  I  *  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112372" stop="112677"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKLKKCKDVAVLHELISNLKTKVQATFANYNRSFTAQMNLPMYIHTKMLLYTLYNFSTRQITACTIFMFITTHQRPGARIVQSYQQFSSAYLVQMISISLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="113901" PGL_stop="113256"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113901" e_stop="113256"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="113901" e_stop="113256" e_length="646"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113901" stop="113256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333021" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAATCTGCAGTCCGAAGAAATATCATAAATAGTGTTTTAAACAACGTGAAACTATCTTATTCACAGAGAATTCGATTGAATCAAGTTTATCGTAATATTATATTGGGCGATCTGAGTCTTCTAGCATAGTGGCAACAGATGTTGGCTCAAAAATTGTTTTAGGTCACAGGTTTTGTATTTTTTTTTTTGAAAAAAATTTCCTTGTTAAAATTTCTGAATCCGCGAGTGCGTCCATGGGGGATTGGGTGATTGGAGCGTTGATCAATTTGTTAGGAAGCATTTTCATCAACTTCGGAACAAATCTACTTAAATTAGCTCATGATGAGAGAAATTTAAGGGCTAGGATGAAGCCCATTATATACTTCCAAGCATGGAGAATTGGTATTCTCTTCTTCACAATAGGAAATTGTCTCAATTTCATTTCATTTGGTTATGCTGCTCAATCACTTCTAGCAGCTTTGGGATCTATTCAGTTCATTTCAAACATCGGATTCGCGTACTTGGTGTTGAACAAAACAGTGAAAATCAAATTACTGTTAGCCACTGCTTTTGTTGTTGCTGGAAACATTTTCCTTGTAGCTTTTGGTAATCATCAGTCCCCTGTTTACACAACAGAGCAATTGGGTGAAAATTACACAAACATT</gDNA_template>
            <first_frame> L  N  L  Q  S  E  E  I  S  *  I  V  F  *  T  T  *  N  Y  L  I  H  R  E  F  D  *  I  K  F  I  V  I  L  Y  W  A  I  *  V  F  *  H  S  G  N  R  C  W  L  K  N  C  F  R  S  Q  V  L  Y  F  F  F  *  K  K  F  P  C  *  N  F  *  I  R  E  C  V  H  G  G  L  G  D  W  S  V  D  Q  F  V  R  K  H  F  H  Q  L  R  N  K  S  T  *  I  S  S  *  *  E  K  F  K  G  *  D  E  A  H  Y  I  L  P  S  M  E  N  W  Y  S  L  L  H  N  R  K  L  S  Q  F  H  F  I  W  L  C  C  S  I  T  S  S  S  F  G  I  Y  S  V  H  F  K  H  R  I  R  V  L  G  V  E  Q  N  S  E  N  Q  I  T  V  S  H  C  F  C  C  C  W  K  H  F  P  C  S  F  W  *  S  S  V  P  C  L  H  N  R  A  I  G  *  K  L  H  K  H  </first_frame>
            <second_frame>  *  I  C  S  P  K  K  Y  H  K  *  C  F  K  Q  R  E  T  I  L  F  T  E  N  S  I  E  S  S  L  S  *  Y  Y  I  G  R  S  E  S  S  S  I  V  A  T  D  V  G  S  K  I  V  L  G  H  R  F  C  I  F  F  F  E  K  N  F  L  V  K  I  S  E  S  A  S  A  S  M  G  D  W  V  I  G  A  L  I  N  L  L  G  S  I  F  I  N  F  G  T  N  L  L  K  L  A  H  D  E  R  N  L  R  A  R  M  K  P  I  I  Y  F  Q  A  W  R  I  G  I  L  F  F  T  I  G  N  C  L  N  F  I  S  F  G  Y  A  A  Q  S  L  L  A  A  L  G  S  I  Q  F  I  S  N  I  G  F  A  Y  L  V  L  N  K  T  V  K  I  K  L  L  L  A  T  A  F  V  V  A  G  N  I  F  L  V  A  F  G  N  H  Q  S  P  V  Y  T  T  E  Q  L  G  E  N  Y  T  N  I </second_frame>
            <third_frame>   K  S  A  V  R  R  N  I  I  N  S  V  L  N  N  V  K  L  S  Y  S  Q  R  I  R  L  N  Q  V  Y  R  N  I  I  L  G  D  L  S  L  L  A  *  W  Q  Q  M  L  A  Q  K  L  F  *  V  T  G  F  V  F  F  F  L  K  K  I  S  L  L  K  F  L  N  P  R  V  R  P  W  G  I  G  *  L  E  R  *  S  I  C  *  E  A  F  S  S  T  S  E  Q  I  Y  L  N  *  L  M  M  R  E  I  *  G  L  G  *  S  P  L  Y  T  S  K  H  G  E  L  V  F  S  S  S  Q  *  E  I  V  S  I  S  F  H  L  V  M  L  L  N  H  F  *  Q  L  W  D  L  F  S  S  F  Q  T  S  D  S  R  T  W  C  *  T  K  Q  *  K  S  N  Y  C  *  P  L  L  L  L  L  L  E  T  F  S  L  *  L  L  V  I  I  S  P  L  F  T  Q  Q  S  N  W  V  K  I  T  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113804" stop="113256"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYIGRSESSSIVATDVGSKIVLGHRFCIFFFEKNFLVKISESASASMGDWVIGALINLLGSIFINFGTNLLKLAHDERNLRARMKPIIYFQAWRIGILFFTIGNCLNFISFGYAAQSLLAALGSIQFISNIGFAYLVLNKTVKIKLLLATAFVVAGNIFLVAFGNHQSPVYTTEQLGENYTNI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="+" PGL_start="118554" PGL_stop="118983"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118554" e_stop="118983"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="118554" e_stop="118983" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118554" stop="118983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345344" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGCTTGAGACTTGAGTCTTGAGATATCTTGAGAAGAGTTATTTGTTGGTGGCGAAAAACAAGAACAAAAAGGGAGGGAGATATGAAGTTAATAGTAGAAGTAATAGATGCTTATGATCTTATGCCAAAAGATGGTGAAGGATCAGTAAGTGCATTTGTAGAAGTTGATTTTGAAAACCAACTTAGCAAAACTAGAACTGTCCCAAAAAATCTCAACCCCACTTGGAACCATAAACTCATTTTCCATCTTGACGATATAAAGAATCATCGATACAAATACATTGATGTTTCTGTGTATCATGAGAGAAGGCCTATTCCAGGGAGAAACTTTCTTGGAAGGGTGAGAATTCCTTGCTCAAATATAGTCAAGAAAGGGGAAGAAGTTTATCAAAGATTCCAACTTGAAAAGAAATGGTTTTCCTCATTTGTT</gDNA_template>
            <first_frame> L  L  E  T  *  V  L  R  Y  L  E  K  S  Y  L  L  V  A  K  N  K  N  K  K  G  G  R  Y  E  V  N  S  R  S  N  R  C  L  *  S  Y  A  K  R  W  *  R  I  S  K  C  I  C  R  S  *  F  *  K  P  T  *  Q  N  *  N  C  P  K  K  S  Q  P  H  L  E  P  *  T  H  F  P  S  *  R  Y  K  E  S  S  I  Q  I  H  *  C  F  C  V  S  *  E  K  A  Y  S  R  E  K  L  S  W  K  G  E  N  S  L  L  K  Y  S  Q  E  R  G  R  S  L  S  K  I  P  T  *  K  E  M  V  F  L  I  C  </first_frame>
            <second_frame>  C  L  R  L  E  S  *  D  I  L  R  R  V  I  C  W  W  R  K  T  R  T  K  R  E  G  D  M  K  L  I  V  E  V  I  D  A  Y  D  L  M  P  K  D  G  E  G  S  V  S  A  F  V  E  V  D  F  E  N  Q  L  S  K  T  R  T  V  P  K  N  L  N  P  T  W  N  H  K  L  I  F  H  L  D  D  I  K  N  H  R  Y  K  Y  I  D  V  S  V  Y  H  E  R  R  P  I  P  G  R  N  F  L  G  R  V  R  I  P  C  S  N  I  V  K  K  G  E  E  V  Y  Q  R  F  Q  L  E  K  K  W  F  S  S  F  V </second_frame>
            <third_frame>   A  *  D  L  S  L  E  I  S  *  E  E  L  F  V  G  G  E  K  Q  E  Q  K  G  R  E  I  *  S  *  *  *  K  *  *  M  L  M  I  L  C  Q  K  M  V  K  D  Q  *  V  H  L  *  K  L  I  L  K  T  N  L  A  K  L  E  L  S  Q  K  I  S  T  P  L  G  T  I  N  S  F  S  I  L  T  I  *  R  I  I  D  T  N  T  L  M  F  L  C  I  M  R  E  G  L  F  Q  G  E  T  F  L  E  G  *  E  F  L  A  Q  I  *  S  R  K  G  K  K  F  I  K  D  S  N  L  K  R  N  G  F  P  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118576" stop="118983"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DILRRVICWWRKTRTKREGDMKLIVEVIDAYDLMPKDGEGSVSAFVEVDFENQLSKTRTVPKNLNPTWNHKLIFHLDDIKNHRYKYIDVSVYHERRPIPGRNFLGRVRIPCSNIVKKGEEVYQRFQLEKKWFSSFV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="-" PGL_start="136499" PGL_stop="122410"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="134650" e_stop="134493"/>
            <exon e_start="134408" e_stop="134367"/>
            <exon e_start="130264" e_stop="130258"/>
            <exon e_start="124091" e_stop="124006"/>
            <exon e_start="123770" e_stop="123528"/>
            <exon e_start="123035" e_stop="122410"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.771" acc_prob="0.000" e_score="0.857"/>
          <exon-intron don_prob="0.999" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.909" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="134650" e_stop="134493" e_length="158"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.978">
            <gDNA_intron_boundary i_start="134492" i_stop="134409" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="134408" e_stop="134367" e_length="42"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.888">
            <gDNA_intron_boundary i_start="134366" i_stop="130265" i_length="4102"/>
          </intron>
          <exon e_serial="3" e_score="0.857">
            <gDNA_exon_boundary e_start="130264" e_stop="130258" e_length="7"/>
          </exon>
          <intron i_serial="3" don_prob="0.771" acc_prob="0.000">
            <gDNA_intron_boundary i_start="130257" i_stop="124092" i_length="6166"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="124091" e_stop="124006" e_length="86"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.973">
            <gDNA_intron_boundary i_start="124005" i_stop="123771" i_length="235"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="123770" e_stop="123528" e_length="243"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.909">
            <gDNA_intron_boundary i_start="123527" i_stop="123036" i_length="492"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="123035" e_stop="122410" e_length="626"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134650" stop="134493"/>
              <exon start="134408" stop="134367"/>
              <exon start="130264" stop="130258"/>
              <exon start="124091" stop="124006"/>
              <exon start="123770" stop="123547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123604" stop="123528"/>
              <exon start="123035" stop="122410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346444" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAGATATACGTCAATTTAACATGTTGCTACAATGAGGAATGTGACCGTGTAAAGGGATCTGTCGGCACCCAGCTTGTTGGTGAAAGAGCAAAAATTATCCTGGATGAAGTTCAGGCCCTATCTCTTTTTACCCGAGCACAGTGCCTGCGACATATTG : GGGAGCATTTCCAACCTGTTGTGATCGGAATGCAAAATGATA : GTAACAG : GCATGAGGCCAGATCTTATTATTAATCCTCATGCTTTCCCTTCAAGGATGACAATTGCTATGCTGTTGGAGTCGATTGCTGCTAAG : GGGGGTGCTTTACATGGGAAGTTTGTTGATGCAACGCCGTTCTCTAACACAATGAAGGAATCAGAATCGGAATCCAGTTCACTTGTGGATGACCTTGGTTCCATGTTAGCGGTTTGTGGCTTCAATCACCATGGTACGGAAGTACTATATAGTGGAGTATATGGGACAGAACTGACTTGTCGAATATTTATTGGACCTGTTTATTATCAGCGTCTGCGACACATGGTTTCTGATAAATTTCAG : GTCCGTTCTACTGGACAGGTAGACCATATCACTCGGCAGCCTATCAAGGGGAGAAAGCGTGGTGGAGGTGTCCGCTTTGGTGAAATGGAACGAGATTCACTCCTTGCTCATGGAGCATCATATTTGCTGCATGATAGACTCCATACAAGCTCAGATCATCACATTGCAGATGTGTGCTCTGAATGTGGAAGTGTCCTAACATCATCTGTTATTCAGCCGCCAAAACGAGCAGTGCAAGCAATTCTGAAACAGCTACCTGCTAGAGAACCCAAAAAGGTTACTTGTGTCGCTTGTCGTTCAAGTAAAGGAATGGAGACTGTTGCTATGCCTTATGTGTTTAAATATTTAGCGGCTGAACTGGCAGCCATGAACATCAAGATGACCCTCAAACTAAGTAATGAGGCTGGAGCTTGATACACATTTCTGGCGGTTGGAATATTCTAATGTCTAGATGCAAGCTGGGAGCTTGATTACCATTTCATCTGTACCTGTAGTTTCTCAATGTGCAACATGTCCAAAAAGGTGTTTGCAGCATCAGATAACTGGATTCTGGCAACAGTGATTTGGTTTTATAATTTGAAGGCCAGTTTCCTAGTGGGCTACTGAGAAAGAGAGTGTGCTGCAAA</gDNA_template>
            <first_frame> R  D  I  R  Q  F  N  M  L  L  Q  *  G  M  *  P  C  K  G  I  C  R  H  P  A  C  W  *  K  S  K  N  Y  P  G  *  S  S  G  P  I  S  F  Y  P  S  T  V  P  A  T  Y  W :   G  A  F  P  T  C  C  D  R  N  A  K  *  * :   *  Q  :  A  *  G  Q  I  L  L  L  I  L  M  L  S  L  Q  G  *  Q  L  L  C  C  W  S  R  L  L  L  R :   G  V  L  Y  M  G  S  L  L  M  Q  R  R  S  L  T  Q  *  R  N  Q  N  R  N  P  V  H  L  W  M  T  L  V  P  C  *  R  F  V  A  S  I  T  M  V  R  K  Y  Y  I  V  E  Y  M  G  Q  N  *  L  V  E  Y  L  L  D  L  F  I  I  S  V  C  D  T  W  F  L  I  N  F  R :   S  V  L  L  D  R  *  T  I  S  L  G  S  L  S  R  G  E  S  V  V  E  V  S  A  L  V  K  W  N  E  I  H  S  L  L  M  E  H  H  I  C  C  M  I  D  S  I  Q  A  Q  I  I  T  L  Q  M  C  A  L  N  V  E  V  S  *  H  H  L  L  F  S  R  Q  N  E  Q  C  K  Q  F  *  N  S  Y  L  L  E  N  P  K  R  L  L  V  S  L  V  V  Q  V  K  E  W  R  L  L  L  C  L  M  C  L  N  I  *  R  L  N  W  Q  P  *  T  S  R  *  P  S  N  *  V  M  R  L  E  L  D  T  H  F  W  R  L  E  Y  S  N  V  *  M  Q  A  G  S  L  I  T  I  S  S  V  P  V  V  S  Q  C  A  T  C  P  K  R  C  L  Q  H  Q  I  T  G  F  W  Q  Q  *  F  G  F  I  I  *  R  P  V  S  *  W  A  T  E  K  E  S  V  L  Q  </first_frame>
            <second_frame>  E  I  Y  V  N  L  T  C  C  Y  N  E  E  C  D  R  V  K  G  S  V  G  T  Q  L  V  G  E  R  A  K  I  I  L  D  E  V  Q  A  L  S  L  F  T  R  A  Q  C  L  R  H  I   : G  E  H  F  Q  P  V  V  I  G  M  Q  N  D   : S  N  R :   H  E  A  R  S  Y  Y  *  S  S  C  F  P  F  K  D  D  N  C  Y  A  V  G  V  D  C  C  *   : G  G  C  F  T  W  E  V  C  *  C  N  A  V  L  *  H  N  E  G  I  R  I  G  I  Q  F  T  C  G  *  P  W  F  H  V  S  G  L  W  L  Q  S  P  W  Y  G  S  T  I  *  W  S  I  W  D  R  T  D  L  S  N  I  Y  W  T  C  L  L  S  A  S  A  T  H  G  F  *  *  I  S   : G  P  F  Y  W  T  G  R  P  Y  H  S  A  A  Y  Q  G  E  K  A  W  W  R  C  P  L  W  *  N  G  T  R  F  T  P  C  S  W  S  I  I  F  A  A  *  *  T  P  Y  K  L  R  S  S  H  C  R  C  V  L  *  M  W  K  C  P  N  I  I  C  Y  S  A  A  K  T  S  S  A  S  N  S  E  T  A  T  C  *  R  T  Q  K  G  Y  L  C  R  L  S  F  K  *  R  N  G  D  C  C  Y  A  L  C  V  *  I  F  S  G  *  T  G  S  H  E  H  Q  D  D  P  Q  T  K  *  *  G  W  S  L  I  H  I  S  G  G  W  N  I  L  M  S  R  C  K  L  G  A  *  L  P  F  H  L  Y  L  *  F  L  N  V  Q  H  V  Q  K  G  V  C  S  I  R  *  L  D  S  G  N  S  D  L  V  L  *  F  E  G  Q  F  P  S  G  L  L  R  K  R  V  C  C  K </second_frame>
            <third_frame>   R  Y  T  S  I  *  H  V  A  T  M  R  N  V  T  V  *  R  D  L  S  A  P  S  L  L  V  K  E  Q  K  L  S  W  M  K  F  R  P  Y  L  F  L  P  E  H  S  A  C  D  I  L  :  G  S  I  S  N  L  L  *  S  E  C  K  M  I  :  V  T   : G  M  R  P  D  L  I  I  N  P  H  A  F  P  S  R  M  T  I  A  M  L  L  E  S  I  A  A  K  :  G  G  A  L  H  G  K  F  V  D  A  T  P  F  S  N  T  M  K  E  S  E  S  E  S  S  S  L  V  D  D  L  G  S  M  L  A  V  C  G  F  N  H  H  G  T  E  V  L  Y  S  G  V  Y  G  T  E  L  T  C  R  I  F  I  G  P  V  Y  Y  Q  R  L  R  H  M  V  S  D  K  F  Q  :  V  R  S  T  G  Q  V  D  H  I  T  R  Q  P  I  K  G  R  K  R  G  G  G  V  R  F  G  E  M  E  R  D  S  L  L  A  H  G  A  S  Y  L  L  H  D  R  L  H  T  S  S  D  H  H  I  A  D  V  C  S  E  C  G  S  V  L  T  S  S  V  I  Q  P  P  K  R  A  V  Q  A  I  L  K  Q  L  P  A  R  E  P  K  K  V  T  C  V  A  C  R  S  S  K  G  M  E  T  V  A  M  P  Y  V  F  K  Y  L  A  A  E  L  A  A  M  N  I  K  M  T  L  K  L  S  N  E  A  G  A  *  Y  T  F  L  A  V  G  I  F  *  C  L  D  A  S  W  E  L  D  Y  H  F  I  C  T  C  S  F  S  M  C  N  M  S  K  K  V  F  A  A  S  D  N  W  I  L  A  T  V  I  W  F  Y  N  L  K  A  S  F  L  V  G  Y  *  E  R  E  C  A  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134384" stop="134367"/>
                    <exon start="130264" stop="130258"/>
                    <exon start="124091" stop="124006"/>
                    <exon start="123770" stop="123528"/>
                    <exon start="123035" stop="122622"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SECKMIVTGMRPDLIINPHAFPSRMTIAMLLESIAAKGGALHGKFVDATPFSNTMKESESESSSLVDDLGSMLAVCGFNHHGTEVLYSGVYGTELTCRIFIGPVYYQRLRHMVSDKFQVRSTGQVDHITRQPIKGRKRGGGVRFGEMERDSLLAHGASYLLHDRLHTSSDHHIADVCSECGSVLTSSVIQPPKRAVQAILKQLPAREPKKVTCVACRSSKGMETVAMPYVFKYLAAELAAMNIKMTLKLSNEAGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="136499" e_stop="136432"/>
            <exon e_start="136352" e_stop="136307"/>
            <exon e_start="134673" e_stop="134493"/>
            <exon e_start="134408" e_stop="134356"/>
            <exon e_start="134246" e_stop="134173"/>
            <exon e_start="134065" e_stop="133948"/>
            <exon e_start="131212" e_stop="131125"/>
            <exon e_start="130441" e_stop="130387"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.605" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.810" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.889" e_score="1.000"/>
          <exon-intron don_prob="0.858" acc_prob="0.808" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="136499" e_stop="136432" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.605" acc_prob="0.997">
            <gDNA_intron_boundary i_start="136431" i_stop="136353" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="136352" e_stop="136307" e_length="46"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.975">
            <gDNA_intron_boundary i_start="136306" i_stop="134674" i_length="1633"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="134673" e_stop="134493" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.978">
            <gDNA_intron_boundary i_start="134492" i_stop="134409" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="134408" e_stop="134356" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.810" acc_prob="0.998">
            <gDNA_intron_boundary i_start="134355" i_stop="134247" i_length="109"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="134246" e_stop="134173" e_length="74"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.889">
            <gDNA_intron_boundary i_start="134172" i_stop="134066" i_length="107"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="134065" e_stop="133948" e_length="118"/>
          </exon>
          <intron i_serial="6" don_prob="0.858" acc_prob="0.808">
            <gDNA_intron_boundary i_start="133947" i_stop="131213" i_length="2735"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="131212" e_stop="131125" e_length="88"/>
          </exon>
          <intron i_serial="7" don_prob="0.970" acc_prob="0.997">
            <gDNA_intron_boundary i_start="131124" i_stop="130442" i_length="683"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="130441" e_stop="130387" e_length="55"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136499" stop="136432"/>
              <exon start="136352" stop="136307"/>
              <exon start="134673" stop="134493"/>
              <exon start="134408" stop="134356"/>
              <exon start="134246" stop="134173"/>
              <exon start="134065" stop="133948"/>
              <exon start="131212" stop="131125"/>
              <exon start="130441" stop="130387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339609" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGATCAATCTGCAGTCTCACTTAAATTGTATTATCTAAACAATGGAAGTGCAAGACTTGGATTCTG : GATACAAGGAAGGGAATACTTGCTTCCTGTTGGTATCATCTTAAAG : GCCCTTGTTGACACCACTGATCACGAGATATACGTCAATTTAACATGTTGCTACAATGAGGAATGTGACCGTGTAAAGGGATCTGTCGGCACCCAGCTTGTTGGTGAAAGAGCAAAAATTATCCTGGATGAAGTTCAGGCCCTATCTCTTTTTACCCGAGCACAGTGCCTGCGACATATTG : GGGAGCATTTCCAACCTGTTGTGATCGGAATGCAAAATGATAGTTACAAAACT : GTTGCTGATGCTGTGCTTAGAGACTACATATTTGTCCATCTGGATAACAATCATGATAAATTTAATCTACTTAT : CTTTATGTTGCAGAAGCTTTTCTCTCTGATAGATCAGACATCTGTCCTAGACAATCCAGACTCTCTGCAAAATCAAGAAGTTTTGCTGCCGGGTCACTTAATTACCATATATCTGAAG : GAAAAGCTACAAGATTGGCTACTTAAATTACAACGGTCACTTCAAGAAGAAACTGATGGTGAAAAAAAGAAGTTTGAGCTAAGTAGCT : TGACAGACGTCAAGAAGGCTATTGAAAAAAATGCTCCCAAACAGATTGGCTTGAC</gDNA_template>
            <first_frame> E  D  Q  S  A  V  S  L  K  L  Y  Y  L  N  N  G  S  A  R  L  G  F  W :   I  Q  G  R  E  Y  L  L  P  V  G  I  I  L  K  :  A  L  V  D  T  T  D  H  E  I  Y  V  N  L  T  C  C  Y  N  E  E  C  D  R  V  K  G  S  V  G  T  Q  L  V  G  E  R  A  K  I  I  L  D  E  V  Q  A  L  S  L  F  T  R  A  Q  C  L  R  H  I   : G  E  H  F  Q  P  V  V  I  G  M  Q  N  D  S  Y  K  T  :  V  A  D  A  V  L  R  D  Y  I  F  V  H  L  D  N  N  H  D  K  F  N  L  L  I :   F  M  L  Q  K  L  F  S  L  I  D  Q  T  S  V  L  D  N  P  D  S  L  Q  N  Q  E  V  L  L  P  G  H  L  I  T  I  Y  L  K  :  E  K  L  Q  D  W  L  L  K  L  Q  R  S  L  Q  E  E  T  D  G  E  K  K  K  F  E  L  S  S   : L  T  D  V  K  K  A  I  E  K  N  A  P  K  Q  I  G  L   </first_frame>
            <second_frame>  K  I  N  L  Q  S  H  L  N  C  I  I  *  T  M  E  V  Q  D  L  D  S   : G  Y  K  E  G  N  T  C  F  L  L  V  S  S  *  R :   P  L  L  T  P  L  I  T  R  Y  T  S  I  *  H  V  A  T  M  R  N  V  T  V  *  R  D  L  S  A  P  S  L  L  V  K  E  Q  K  L  S  W  M  K  F  R  P  Y  L  F  L  P  E  H  S  A  C  D  I  L  :  G  S  I  S  N  L  L  *  S  E  C  K  M  I  V  T  K  L :   L  L  M  L  C  L  E  T  T  Y  L  S  I  W  I  T  I  M  I  N  L  I  Y  L   : S  L  C  C  R  S  F  S  L  *  *  I  R  H  L  S  *  T  I  Q  T  L  C  K  I  K  K  F  C  C  R  V  T  *  L  P  Y  I  *  R :   K  S  Y  K  I  G  Y  L  N  Y  N  G  H  F  K  K  K  L  M  V  K  K  R  S  L  S  *  V  A  :  *  Q  T  S  R  R  L  L  K  K  M  L  P  N  R  L  A  *  </second_frame>
            <third_frame>   R  S  I  C  S  L  T  *  I  V  L  S  K  Q  W  K  C  K  T  W  I  L  :  D  T  R  K  G  I  L  A  S  C  W  Y  H  L  K   : G  P  C  *  H  H  *  S  R  D  I  R  Q  F  N  M  L  L  Q  *  G  M  *  P  C  K  G  I  C  R  H  P  A  C  W  *  K  S  K  N  Y  P  G  *  S  S  G  P  I  S  F  Y  P  S  T  V  P  A  T  Y  W :   G  A  F  P  T  C  C  D  R  N  A  K  *  *  L  Q  N   : C  C  *  C  C  A  *  R  L  H  I  C  P  S  G  *  Q  S  *  *  I  *  S  T  Y  :  L  Y  V  A  E  A  F  L  S  D  R  S  D  I  C  P  R  Q  S  R  L  S  A  K  S  R  S  F  A  A  G  S  L  N  Y  H  I  S  E   : G  K  A  T  R  L  A  T  *  I  T  T  V  T  S  R  R  N  *  W  *  K  K  E  V  *  A  K  *  L :   D  R  R  Q  E  G  Y  *  K  K  C  S  Q  T  D  W  L  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136499" stop="136432"/>
                    <exon start="136352" stop="136307"/>
                    <exon start="134673" stop="134493"/>
                    <exon start="134408" stop="134356"/>
                    <exon start="134246" stop="134173"/>
                    <exon start="134065" stop="133948"/>
                    <exon start="131212" stop="131125"/>
                    <exon start="130441" stop="130389"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EDQSAVSLKLYYLNNGSARLGFWIQGREYLLPVGIILKALVDTTDHEIYVNLTCCYNEECDRVKGSVGTQLVGERAKIILDEVQALSLFTRAQCLRHIGEHFQPVVIGMQNDSYKTVADAVLRDYIFVHLDNNHDKFNLLIFMLQKLFSLIDQTSVLDNPDSLQNQEVLLPGHLITIYLKEKLQDWLLKLQRSLQEETDGEKKKFELSSLTDVKKAIEKNAPKQIGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 85 chains have been computed
$ 
$ memory statistics:
$ 312256 bytes spliced alignments in total
$ 34 spliced alignments have been stored
$ 9184 bytes was the average size of a spliced alignment
$ 36288 bytes predicted gene locations in total
$ 26 predicted gene locations have been stored
$ 1395 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 104 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 06:06:22
-->
