<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 05:49:39"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411935" ref_strand="-" ref_description="SGN-E411935 [STM-15-B19]">
      <seq>tcagaatgacgaatcaagaaactacactcttctgggtttaactcatcatttaagcttgcctaagacatcttctgagatggctgccatagaaaaatacctacagtttcaacaagattcagtgccttgcaaaatacgtgctaaacgaggctgtgctacgcacccacgaagtattgcagagaggatgagacgtactcggattagtgaaagaatgaaaaaactgcaagatcttttcccaaatatggacaagcaaacaaacacagctgatatgctagatttggcagttgattacattaaagaccttcagaaacaagtccagacactgaacgataaaaaggcgaaatgctcgtgtacaactaagcagctgcaatattcaaatggaacaacatgaaattttcgtctgtacagatatagtaataggtgaagttagatgggaagatggaaaaggagagtaaatgaactctctttctgccctaatatgctggaaatatggtttacttgtttttatttagcaataagacaagtgtagttttcaatgtattattgagtttgagtagatctaataacagtctagtgggtacantctnaaaaaaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="1" stop="1157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="131" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="181" r_length="131" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132" i_stop="257" i_length="126">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258" g_stop="323" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="247" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="324" i_stop="420" i_length="97">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="421" g_stop="489" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="316" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="490" i_stop="595" i_length="106">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="596" g_stop="866" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="595" r_length="279" r_score="0.845"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E411935" ref_strand="-">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E411935" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="131"/>
          <exon e_start="258" e_stop="323"/>
          <exon e_start="421" e_stop="489"/>
          <exon e_start="596" e_stop="866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTTGCCTAAGACATCTTCTGAGATGGCTGCCATAGAGAAATACCTACAGTTCCAACAAGATTCAGTGCCTTGCAAAATACGTGCTAAACGAGGCTGTGCTACGCACCCACGAAGTATTGCAGAAAGGGTAAAAATTCTGTCTTGTTTACCTAGTTTTCCGATTAATCATTATGTTTATACTTGAAGTGCATAACTATGATGAAACTTGTTGTTCGCGTTAAGTTCTCATTTTCTTGTTTAACAATTTGTGTAGATGAGACGTACTCGGATTAGTGAAAGAATGAAAAAACTGCAAGATCTTTTCCCAAATATGGACAAGGTAAATTCTAGTCATGTTTGTTGTATCAATCAATTTTTGTCTAAAAGAAGGTAGAAAGAACTCAACTCACATGTTCTCTTATTGAATGAAATGGCAGCAAACAAACACAGCTGATATGTTAGATTTGGCAGTTGATTACATTAAAGACCTTCAGAAACAAGTCCAGGTAATGACCAAAAAAAGTGTTTTTTCTCCATGAAGTACTCACATGAATCAATCTCTCAAGCAACATTTATATCTTCTTTACCAAATTTACACTTATTTAATGCCAGACACTGACCGATAAAAAGGCGAAATGCTCGTGTACAAGTAAGCAGCTGCAATATTCAAATGGAACAACATGAAATAGTCTTGTGTACAG--ATAGTAATAGGTGAAG-T---T----AGATGGAAAAGGAGAGTAAATAAACTCTCTTTCTACCCTAATATGCTGGAAATATGGTTCTACTTTGTTTTTATTTTGCAACAAGGCAAGTGTAGTTTTCAATGTATTATTGAGTTTGATTAGATCTAATAACAGTCTAGTGAGTACAATCTAGATGTATAGGA</genome_strand>
        <mrna_strand>TAAGCTTGCCTAAGACATCTTCTGAGATGGCTGCCATAGAAAAATACCTACAGTTTCAACAAGATTCAGTGCCTTGCAAAATACGTGCTAAACGAGGCTGTGCTACGCACCCACGAAGTATTGCAGAGAGG..............................................................................................................................ATGAGACGTACTCGGATTAGTGAAAGAATGAAAAAACTGCAAGATCTTTTCCCAAATATGGACAAG.................................................................................................CAAACAAACACAGCTGATATGCTAGATTTGGCAGTTGATTACATTAAAGACCTTCAGAAACAAGTCCAG..........................................................................................................ACACTGAACGATAAAAAGGCGAAATGCTCGTGTACAACTAAGCAGCTGCAATATTCAAATGGAACAACATGAAATTTTCGTCTGTACAGATATAGTAATAGGTGAAGTTAGATGGGAAGATGGAAAAGGAGAGTAAATGAACTCTCTTTCTGCCCTAATATGCTGGAAATATGGTT-TAC-TTGTTTTTATTTAGCAATAAGACAAGTGTAGTTTTCAATGTATTATTGAGTTTGAGTAGATCTAATAACAGTCTAGTGGGTACANTCTNAAAAAAAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395260" ref_strand="-" ref_description="SGN-E395260 [TUS-46-G18]">
      <seq>actttacagttccaacaagattcagtgcctgcaaaaatacgtgttaaacgaggctgtgctacgcacccacgaagtattgcagaaaggatgagatgtactcggattagtgaaagaatgaaaaaactgcaagatcttttcccaaatatggacaagcaaacaaacacagctgatatgttagatttggcagttgattacattaaagaccttcagaaacaagtccagacactgaccgataaaaaggcgaaatgatcgtgtacaagtaagcagctgcaatattcaaatggaacaacatgaaatagtcttgtgtacagatagtaataggtgaagttagatggaaaaggagagtaaataaactctctttgtaccataatatgctggaaatatggttctactttgtttttattttgcaacaaggcaagtgtagttttcaatgtattattgagtttgattagatttaataacagtgtagtgagtacaatctagatgtataggagcgacatgattattgtattatgaatgttgtttattggaatttaactacgttattagttgattcaaaaaaaaaaaaaaaaaaaactcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="1" stop="1231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46" g_stop="131" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132" i_stop="257" i_length="126">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258" g_stop="323" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="153" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="324" i_stop="420" i_length="97">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="421" g_stop="489" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="222" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="490" i_stop="595" i_length="106">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="596" g_stop="955" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="582" r_length="360" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E395260" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395260" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46" e_stop="131"/>
          <exon e_start="258" e_stop="323"/>
          <exon e_start="421" e_stop="489"/>
          <exon e_start="596" e_stop="955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AC-CTACAGTTCCAACAAGATTCAGTGCCTTGCAAAATACGTGCTAAACGAGGCTGTGCTACGCACCCACGAAGTATTGCAGAAAGGGTAAAAATTCTGTCTTGTTTACCTAGTTTTCCGATTAATCATTATGTTTATACTTGAAGTGCATAACTATGATGAAACTTGTTGTTCGCGTTAAGTTCTCATTTTCTTGTTTAACAATTTGTGTAGATGAGACGTACTCGGATTAGTGAAAGAATGAAAAAACTGCAAGATCTTTTCCCAAATATGGACAAGGTAAATTCTAGTCATGTTTGTTGTATCAATCAATTTTTGTCTAAAAGAAGGTAGAAAGAACTCAACTCACATGTTCTCTTATTGAATGAAATGGCAGCAAACAAACACAGCTGATATGTTAGATTTGGCAGTTGATTACATTAAAGACCTTCAGAAACAAGTCCAGGTAATGACCAAAAAAAGTGTTTTTTCTCCATGAAGTACTCACATGAATCAATCTCTCAAGCAACATTTATATCTTCTTTACCAAATTTACACTTATTTAATGCCAGACACTGACCGATAAAAAGGCGAAATGCTCGTGTACAAGTAAGCAGCTGCAATATTCAAATGGAACAACATGAAATAGTCTTGTGTACAGATAGTAATAGGTGAAGTTAGATGGAAAAGGAGAGTAAATAAACTCTCTTTCTACCCTAATATGCTGGAAATATGGTTCTACTTTGTTTTTATTTTGCAACAAGGCAAGTGTAGTTTTCAATGTATTATTGAGTTTGATTAGATCTAATAACAGTCTAGTGAGTACAATCTAGATGTATAGGAGC-ACATGATTATTGTATTATG-CTGTTGTTTATTGGAATTTAACTATGTTATTAGTTGATTCAAAACTTTATAAGACAAATAATATCGAT</genome_strand>
        <mrna_strand>ACTTTACAGTTCCAACAAGATTCAGTGCCTGCAAAAATACGTGTTAAACGAGGCTGTGCTACGCACCCACGAAGTATTGCAGAAAGG..............................................................................................................................ATGAGATGTACTCGGATTAGTGAAAGAATGAAAAAACTGCAAGATCTTTTCCCAAATATGGACAAG.................................................................................................CAAACAAACACAGCTGATATGTTAGATTTGGCAGTTGATTACATTAAAGACCTTCAGAAACAAGTCCAG..........................................................................................................ACACTGACCGATAAAAAGGCGAAATGATCGTGTACAAGTAAGCAGCTGCAATATTCAAATGGAACAACATGAAATAGTCTTGTGTACAGATAGTAATAGGTGAAGTTAGATGGAAAAGGAGAGTAAATAAACTCTCTTTGTACCATAATATGCTGGAAATATGGTTCTACTTTGTTTTTATTTTGCAACAAGGCAAGTGTAGTTTTCAATGTATTATTGAGTTTGATTAGATTTAATAACAGTGTAGTGAGTACAATCTAGATGTATAGGAGCGACATGATTATTGTATTATGAATGTTGTTTATTGGAATTTAACTACGTTATTAGTTGATTCAAAA--AAAAAAAAAAAAAAAACTCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366193" ref_strand="+" ref_description="SGN-E366193 [cLPT-1-I13](-)">
      <seq>agttccaacaagattcagtgccttgcaaaatacgtgctaaacgaggctgtgctacgcacccacgaagtattgcagaaaggatgagacgtactcggattagtgaaagaatgaaaaaactgcaagatcttttcccaaatatggacaagcaaacaaacacagctgatatgttagatttggcagttgattacattaaagaccttcagaaacaagtccagacactgaccgataaaaaggcgaaatgctcgtgtacaagtaagcagctgcaatattcaaatggaacaacatgaaatagtctcgtgtacagatagtaataggtgaagttagatggaaaaggagagtaaataaactctctttctaccctaatatgctggaaatatggttttacttgtttttatttagcaataaggcaagtgtagttttcaatgtattattgagtttgattagatctaatactaatcaaataacagtctagtgagtacaatctagatgtataggagcacatgattattgtattatgctgttgttcattggaatttaactgtgttattagttgattcgaaactttataagacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="1" stop="1250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52" g_stop="131" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132" i_stop="257" i_length="126">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258" g_stop="323" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="146" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="324" i_stop="420" i_length="97">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="421" g_stop="489" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="215" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="490" i_stop="595" i_length="106">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="596" g_stop="954" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="584" r_length="369" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E366193" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52" e_stop="131"/>
          <exon e_start="258" e_stop="323"/>
          <exon e_start="421" e_stop="489"/>
          <exon e_start="596" e_stop="954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCCAACAAGATTCAGTGCCTTGCAAAATACGTGCTAAACGAGGCTGTGCTACGCACCCACGAAGTATTGCAGAAAGGGTAAAAATTCTGTCTTGTTTACCTAGTTTTCCGATTAATCATTATGTTTATACTTGAAGTGCATAACTATGATGAAACTTGTTGTTCGCGTTAAGTTCTCATTTTCTTGTTTAACAATTTGTGTAGATGAGACGTACTCGGATTAGTGAAAGAATGAAAAAACTGCAAGATCTTTTCCCAAATATGGACAAGGTAAATTCTAGTCATGTTTGTTGTATCAATCAATTTTTGTCTAAAAGAAGGTAGAAAGAACTCAACTCACATGTTCTCTTATTGAATGAAATGGCAGCAAACAAACACAGCTGATATGTTAGATTTGGCAGTTGATTACATTAAAGACCTTCAGAAACAAGTCCAGGTAATGACCAAAAAAAGTGTTTTTTCTCCATGAAGTACTCACATGAATCAATCTCTCAAGCAACATTTATATCTTCTTTACCAAATTTACACTTATTTAATGCCAGACACTGACCGATAAAAAGGCGAAATGCTCGTGTACAAGTAAGCAGCTGCAATATTCAAATGGAACAACATGAAATAGTCTTGTGTACAGATAGTAATAGGTGAAGTTAGATGGAAAAGGAGAGTAAATAAACTCTCTTTCTACCCTAATATGCTGGAAATATGGTTCTACTTTGTTTTTATTTTGCAACAAGGCAAGTGTAGTTTTCAATGTATTATTGAGTTTGATTAG-----AT-C---T--AATAACAGTCTAGTGAGTACAATCTAGATGTATAGGAGCACATGATTATTGTATTATGCTGTTGTTTATTGGAATTTAACTATGTTATTAGTTGATTCAAAACTTTATAAGACAAATAATATCGA</genome_strand>
        <mrna_strand>AGTTCCAACAAGATTCAGTGCCTTGCAAAATACGTGCTAAACGAGGCTGTGCTACGCACCCACGAAGTATTGCAGAAAGG..............................................................................................................................ATGAGACGTACTCGGATTAGTGAAAGAATGAAAAAACTGCAAGATCTTTTCCCAAATATGGACAAG.................................................................................................CAAACAAACACAGCTGATATGTTAGATTTGGCAGTTGATTACATTAAAGACCTTCAGAAACAAGTCCAG..........................................................................................................ACACTGACCGATAAAAAGGCGAAATGCTCGTGTACAAGTAAGCAGCTGCAATATTCAAATGGAACAACATGAAATAGTCTCGTGTACAGATAGTAATAGGTGAAGTTAGATGGAAAAGGAGAGTAAATAAACTCTCTTTCTACCCTAATATGCTGGAAATATGGTTTTAC-TTGTTTTTATTTAGCAATAAGGCAAGTGTAGTTTTCAATGTATTATTGAGTTTGATTAGATCTAATACTAATCAAATAACAGTCTAGTGAGTACAATCTAGATGTATAGGAGCACATGATTATTGTATTATGCTGTTGTTCATTGGAATTTAACTGTGTTATTAGTTGATTCGAAACTTTATAAGACAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572848" ref_strand="-" ref_description="SGN-E572848 [32067]">
      <seq>tacgtgctaaacgagcctgtgctacgcacccacgaagtattgcagaaaggatgagacgtactcggattagtgaaagaatgaaaaaactgcaagatcttttcccaaatatggacaagcatactgacacagctgatatgttagatttggcagttgattacattaaagaccttcagaaacaagtccagacactgaacgataaaaaggcgaaatgctcgtgtacaagtaagcagctgcaatattcaaatggaacaacatgaaattttcgtctgtacagatagtaataggtgaagttagatgggaagatggaaaaggagagtaaatgaactctctttctgacctaatatgctggaaatatggtttacttgtttttatttagcaataagacaagtgtagttttcaatgtattattgagtttgagtagatctaataacagtctagtgggtacaatctagatgtataggagcacatgattattgtattatgctgttgtttattggaatttaactatgttgttagttgattcaaaaaaaaaaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="1" stop="1231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82" g_stop="131" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132" i_stop="257" i_length="126">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258" g_stop="323" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="116" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="324" i_stop="420" i_length="97">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="421" g_stop="489" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="185" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="490" i_stop="595" i_length="106">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="596" g_stop="950" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="545" r_length="360" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E572848" ref_strand="-">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572848" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="82" e_stop="131"/>
          <exon e_start="258" e_stop="323"/>
          <exon e_start="421" e_stop="489"/>
          <exon e_start="596" e_stop="950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTGCTAAACGAGGCTGTGCTACGCACCCACGAAGTATTGCAGAAAGGGTAAAAATTCTGTCTTGTTTACCTAGTTTTCCGATTAATCATTATGTTTATACTTGAAGTGCATAACTATGATGAAACTTGTTGTTCGCGTTAAGTTCTCATTTTCTTGTTTAACAATTTGTGTAGATGAGACGTACTCGGATTAGTGAAAGAATGAAAAAACTGCAAGATCTTTTCCCAAATATGGACAAGGTAAATTCTAGTCATGTTTGTTGTATCAATCAATTTTTGTCTAAAAGAAGGTAGAAAGAACTCAACTCACATGTTCTCTTATTGAATGAAATGGCAGCAAACAAACACAGCTGATATGTTAGATTTGGCAGTTGATTACATTAAAGACCTTCAGAAACAAGTCCAGGTAATGACCAAAAAAAGTGTTTTTTCTCCATGAAGTACTCACATGAATCAATCTCTCAAGCAACATTTATATCTTCTTTACCAAATTTACACTTATTTAATGCCAGACACTGACCGATAAAAAGGCGAAATGCTCGTGTACAAGTAAGCAGCTGCAATATTCAAATGGAACAACATGAAATAGTCTTGTGTACAGATAGTAATAGGTGAAG-T---T----AGATGGAAAAGGAGAGTAAATAAACTCTCTTTCTACCCTAATATGCTGGAAATATGGTTCTACTTTGTTTTTATTTTGCAACAAGGCAAGTGTAGTTTTCAATGTATTATTGAGTTTGATTAGATCTAATAACAGTCTAGTGAGTACAATCTAGATGTATAGGAGCACATGATTATTGTATTATGCTGTTGTTTATTGGAATTTAACTATGTTATTAGTTGATTCAAAACTTTATAAGACAAATAATA</genome_strand>
        <mrna_strand>TACGTGCTAAACGAGCCTGTGCTACGCACCCACGAAGTATTGCAGAAAGG..............................................................................................................................ATGAGACGTACTCGGATTAGTGAAAGAATGAAAAAACTGCAAGATCTTTTCCCAAATATGGACAAG.................................................................................................CATACTGACACAGCTGATATGTTAGATTTGGCAGTTGATTACATTAAAGACCTTCAGAAACAAGTCCAG..........................................................................................................ACACTGAACGATAAAAAGGCGAAATGCTCGTGTACAAGTAAGCAGCTGCAATATTCAAATGGAACAACATGAAATTTTCGTCTGTACAGATAGTAATAGGTGAAGTTAGATGGGAAGATGGAAAAGGAGAGTAAATGAACTCTCTTTCTGACCTAATATGCTGGAAATATGGTT-TAC-TTGTTTTTATTTAGCAATAAGACAAGTGTAGTTTTCAATGTATTATTGAGTTTGAGTAGATCTAATAACAGTCTAGTGGGTACAATCTAGATGTATAGGAGCACATGATTATTGTATTATGCTGTTGTTTATTGGAATTTAACTATGTTGTTAGTTGATTCAAAA-AAAAAAAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419202" ref_strand="-" ref_description="SGN-E419202 [STM-29-M5]">
      <seq>cagagaggatgagacgtactcggattagtgaaagaatgaaaaaactgcaagatcttttcccaaatatggacaagcaaacaaacacagctgatatgttagatttggcagttgattacattaaagaccttcagaaacaagtccagacactgaacgataaaaaggtgaaatgctcgtgtacaagtaagcagctgcaatattcaaatggaacaacatgaaattttcgtctgtacagatagtaataggtgaagttagatgggaagatggaaaaggagagtaaatgaactctctttctgccctaatatgctggaaatatggtttacttgtttttatttagcaataagacaagtgtagttttcaatgtattattgagtttgagtagatctaataacagtctagtgggtacaatctagatgtataggagcacatgattattgtattatgctgttgtttattggaatttaactatgttgttagttgattcgaaactttaaaagacagataatatcgattgaaaagagtacataattggcaattactctgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="1" stop="1268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124" g_stop="131" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132" i_stop="257" i_length="126">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258" g_stop="323" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="74" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="324" i_stop="420" i_length="97">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="421" g_stop="489" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="143" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="490" i_stop="595" i_length="106">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="596" g_stop="963" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="517" r_length="374" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="543" polyA_stop="552"/>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E419202" ref_strand="-">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419202" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="124" e_stop="131"/>
          <exon e_start="258" e_stop="323"/>
          <exon e_start="421" e_stop="489"/>
          <exon e_start="596" e_stop="963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAGGGTAAAAATTCTGTCTTGTTTACCTAGTTTTCCGATTAATCATTATGTTTATACTTGAAGTGCATAACTATGATGAAACTTGTTGTTCGCGTTAAGTTCTCATTTTCTTGTTTAACAATTTGTGTAGATGAGACGTACTCGGATTAGTGAAAGAATGAAAAAACTGCAAGATCTTTTCCCAAATATGGACAAGGTAAATTCTAGTCATGTTTGTTGTATCAATCAATTTTTGTCTAAAAGAAGGTAGAAAGAACTCAACTCACATGTTCTCTTATTGAATGAAATGGCAGCAAACAAACACAGCTGATATGTTAGATTTGGCAGTTGATTACATTAAAGACCTTCAGAAACAAGTCCAGGTAATGACCAAAAAAAGTGTTTTTTCTCCATGAAGTACTCACATGAATCAATCTCTCAAGCAACATTTATATCTTCTTTACCAAATTTACACTTATTTAATGCCAGACACTGACCGATAAAAAGGCGAAATGCTCGTGTACAAGTAAGCAGCTGCAATATTCAAATGGAACAACATGAAATAGTCTTGTGTACAGATAGTAATAGGTGAAG-T---T----AGATGGAAAAGGAGAGTAAATAAACTCTCTTTCTACCCTAATATGCTGGAAATATGGTTCTACTTTGTTTTTATTTTGCAACAAGGCAAGTGTAGTTTTCAATGTATTATTGAGTTTGATTAGATCTAATAACAGTCTAGTGAGTACAATCTAGATGTATAGGAGCACATGATTATTGTATTATGCTGTTGTTTATTGGAATTTAACTATGTTATTAGTTGATTCAAAACTTTATAAGACAAATAATATCGATTGGAAAGA</genome_strand>
        <mrna_strand>CAGAGAGG..............................................................................................................................ATGAGACGTACTCGGATTAGTGAAAGAATGAAAAAACTGCAAGATCTTTTCCCAAATATGGACAAG.................................................................................................CAAACAAACACAGCTGATATGTTAGATTTGGCAGTTGATTACATTAAAGACCTTCAGAAACAAGTCCAG..........................................................................................................ACACTGAACGATAAAAAGGTGAAATGCTCGTGTACAAGTAAGCAGCTGCAATATTCAAATGGAACAACATGAAATTTTCGTCTGTACAGATAGTAATAGGTGAAGTTAGATGGGAAGATGGAAAAGGAGAGTAAATGAACTCTCTTTCTGCCCTAATATGCTGGAAATATGGTT-TAC-TTGTTTTTATTTAGCAATAAGACAAGTGTAGTTTTCAATGTATTATTGAGTTTGAGTAGATCTAATAACAGTCTAGTGGGTACAATCTAGATGTATAGGAGCACATGATTATTGTATTATGCTGTTGTTTATTGGAATTTAACTATGTTGTTAGTTGATTCGAAACTTTAAAAGACAGATAATATCGATTGAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227149" ref_strand="+" ref_description="SGN-E227149 [cLED-1-P16](-)">
      <seq>cgtactcggattagtgaaagaatgaaaaaactgcaagatcttttcccaaatatggacaagcaaacaaacacagctgatatgttagatttggcagttgattacattaaagaccttcagaaacaagtccagacactgaccgataaaaaggcgaaatgctcgtgtacaagtaagcagctgcaatattcaaatggaccaacatgaaatagtcttgtgtacagatagtaataggtgaagttagatggaaaaggagagtaaataaactctctttctaccctaatatgctggaaatatggttctactttgtttttattttgcaacaaggcaagtgtagttttcaatgtattattgagtttgattagatctaataacagtctagtgagtacaatctagatgtataggagcacatgattattgtattatgctgttgtttattggaatttaactatgttattagttgattcaaaactttataagacaaataatatcgattggaaagagtaattccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="1" stop="1281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="264" g_stop="323" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="324" i_stop="420" i_length="97">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="421" g_stop="489" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="129" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="490" i_stop="595" i_length="106">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="596" g_stop="963" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="497" r_length="368" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="506" polyA_stop="537"/>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E227149" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="264" e_stop="323"/>
          <exon e_start="421" e_stop="489"/>
          <exon e_start="596" e_stop="963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTACTCGGATTAGTGAAAGAATGAAAAAACTGCAAGATCTTTTCCCAAATATGGACAAGGTAAATTCTAGTCATGTTTGTTGTATCAATCAATTTTTGTCTAAAAGAAGGTAGAAAGAACTCAACTCACATGTTCTCTTATTGAATGAAATGGCAGCAAACAAACACAGCTGATATGTTAGATTTGGCAGTTGATTACATTAAAGACCTTCAGAAACAAGTCCAGGTAATGACCAAAAAAAGTGTTTTTTCTCCATGAAGTACTCACATGAATCAATCTCTCAAGCAACATTTATATCTTCTTTACCAAATTTACACTTATTTAATGCCAGACACTGACCGATAAAAAGGCGAAATGCTCGTGTACAAGTAAGCAGCTGCAATATTCAAATGGAACAACATGAAATAGTCTTGTGTACAGATAGTAATAGGTGAAGTTAGATGGAAAAGGAGAGTAAATAAACTCTCTTTCTACCCTAATATGCTGGAAATATGGTTCTACTTTGTTTTTATTTTGCAACAAGGCAAGTGTAGTTTTCAATGTATTATTGAGTTTGATTAGATCTAATAACAGTCTAGTGAGTACAATCTAGATGTATAGGAGCACATGATTATTGTATTATGCTGTTGTTTATTGGAATTTAACTATGTTATTAGTTGATTCAAAACTTTATAAGACAAATAATATCGATTGGAAAGA</genome_strand>
        <mrna_strand>CGTACTCGGATTAGTGAAAGAATGAAAAAACTGCAAGATCTTTTCCCAAATATGGACAAG.................................................................................................CAAACAAACACAGCTGATATGTTAGATTTGGCAGTTGATTACATTAAAGACCTTCAGAAACAAGTCCAG..........................................................................................................ACACTGACCGATAAAAAGGCGAAATGCTCGTGTACAAGTAAGCAGCTGCAATATTCAAATGGACCAACATGAAATAGTCTTGTGTACAGATAGTAATAGGTGAAGTTAGATGGAAAAGGAGAGTAAATAAACTCTCTTTCTACCCTAATATGCTGGAAATATGGTTCTACTTTGTTTTTATTTTGCAACAAGGCAAGTGTAGTTTTCAATGTATTATTGAGTTTGATTAGATCTAATAACAGTCTAGTGAGTACAATCTAGATGTATAGGAGCACATGATTATTGTATTATGCTGTTGTTTATTGGAATTTAACTATGTTATTAGTTGATTCAAAACTTTATAAGACAAATAATATCGATTGGAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378078" ref_strand="+" ref_description="SGN-E378078 [TUS-21-P16](-)">
      <seq>tgcaagatcttttcccaaaaatggacaagcaaacaaacacagctgatatgttagatttggcagttgattacattaaagcccttcagaaacaagtccagacactgaccgataaaaaggcgaaatgctcgtgtacaagtaagcagctgcaatattcaaatggaacaacatgaaatagtcttgtgtacaaatagtaataggtgaagttaaatggaaaaggaaagtaaataaactctctttttaccctaatatgctggaaaaatggttctactttgtttttattttgcaacaaggcaagtgtagttttcaatgtattattgagtttgattagatttaataacagtttagtgagtacaatttagatgtataggagcccatgattattgtattatgctgttgtttattggaatttaaatatgttattagttgattcaaaactttataagacaaataatatcgattggaaagagtaattcccccaaaaaaaaaaaaaaacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="1" stop="1271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="295" g_stop="323" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="324" i_stop="420" i_length="97">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.818" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="421" g_stop="489" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="98" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="490" i_stop="595" i_length="106">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="596" g_stop="963" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="466" r_length="368" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="478" polyA_stop="507"/>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E378078" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="295" e_stop="323"/>
          <exon e_start="421" e_stop="489"/>
          <exon e_start="596" e_stop="963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAGATCTTTTCCCAAATATGGACAAGGTAAATTCTAGTCATGTTTGTTGTATCAATCAATTTTTGTCTAAAAGAAGGTAGAAAGAACTCAACTCACATGTTCTCTTATTGAATGAAATGGCAGCAAACAAACACAGCTGATATGTTAGATTTGGCAGTTGATTACATTAAAGACCTTCAGAAACAAGTCCAGGTAATGACCAAAAAAAGTGTTTTTTCTCCATGAAGTACTCACATGAATCAATCTCTCAAGCAACATTTATATCTTCTTTACCAAATTTACACTTATTTAATGCCAGACACTGACCGATAAAAAGGCGAAATGCTCGTGTACAAGTAAGCAGCTGCAATATTCAAATGGAACAACATGAAATAGTCTTGTGTACAGATAGTAATAGGTGAAGTTAGATGGAAAAGGAGAGTAAATAAACTCTCTTTCTACCCTAATATGCTGGAAATATGGTTCTACTTTGTTTTTATTTTGCAACAAGGCAAGTGTAGTTTTCAATGTATTATTGAGTTTGATTAGATCTAATAACAGTCTAGTGAGTACAATCTAGATGTATAGGAGCACATGATTATTGTATTATGCTGTTGTTTATTGGAATTTAACTATGTTATTAGTTGATTCAAAACTTTATAAGACAAATAATATCGATTGGAAAGA</genome_strand>
        <mrna_strand>TGCAAGATCTTTTCCCAAAAATGGACAAG.................................................................................................CAAACAAACACAGCTGATATGTTAGATTTGGCAGTTGATTACATTAAAGCCCTTCAGAAACAAGTCCAG..........................................................................................................ACACTGACCGATAAAAAGGCGAAATGCTCGTGTACAAGTAAGCAGCTGCAATATTCAAATGGAACAACATGAAATAGTCTTGTGTACAAATAGTAATAGGTGAAGTTAAATGGAAAAGGAAAGTAAATAAACTCTCTTTTTACCCTAATATGCTGGAAAAATGGTTCTACTTTGTTTTTATTTTGCAACAAGGCAAGTGTAGTTTTCAATGTATTATTGAGTTTGATTAGATTTAATAACAGTTTAGTGAGTACAATTTAGATGTATAGGAGCCCATGATTATTGTATTATGCTGTTGTTTATTGGAATTTAAATATGTTATTAGTTGATTCAAAACTTTATAAGACAAATAATATCGATTGGAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245081" ref_strand="-" ref_description="SGN-E245081 [cLEF-13-F5]">
      <seq>tatgttagatttggcagttgattacattaaagaccttcagaaacaagtccagacactgaccgataaaaaggcgaaatgctcgtgtacaagtaagcagctgcaatattcaaatggaacaacatgaaatagtcttgtgtacagatagtaataggtgaagttagatggaaaaggagagtaaataaactctctttctaccctaatatgctggaaatatggttctactttgtttttattttgcaacaaggcaagtgtagttttcaatgtattattgagtttgattagatctaataacagtctagtgagtacaatctagatgtataggagcacatgattattgtattatgctgttgtttattggaatttaactatgttattagttgattccaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="138" stop="1231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="438" g_stop="489" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="490" i_stop="595" i_length="106">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="596" g_stop="954" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="409" r_length="357" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E245081" ref_strand="-">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245081" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="438" e_stop="489"/>
          <exon e_start="596" e_stop="954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGTTAGATTTGGCAGTTGATTACATTAAAGACCTTCAGAAACAAGTCCAGGTAATGACCAAAAAAAGTGTTTTTTCTCCATGAAGTACTCACATGAATCAATCTCTCAAGCAACATTTATATCTTCTTTACCAAATTTACACTTATTTAATGCCAGACACTGACCGATAAAAAGGCGAAATGCTCGTGTACAAGTAAGCAGCTGCAATATTCAAATGGAACAACATGAAATAGTCTTGTGTACAGATAGTAATAGGTGAAGTTAGATGGAAAAGGAGAGTAAATAAACTCTCTTTCTACCCTAATATGCTGGAAATATGGTTCTACTTTGTTTTTATTTTGCAACAAGGCAAGTGTAGTTTTCAATGTATTATTGAGTTTGATTAGATCTAATAACAGTCTAGTGAGTACAATCTAGATGTATAGGAGCACATGATTATTGTATTATGCTGTTGTTTATTGGAATTTAACTATGTTATTAGTTGATTCAAAACTTTATAAGACAAATAATATCGA</genome_strand>
        <mrna_strand>TATGTTAGATTTGGCAGTTGATTACATTAAAGACCTTCAGAAACAAGTCCAG..........................................................................................................ACACTGACCGATAAAAAGGCGAAATGCTCGTGTACAAGTAAGCAGCTGCAATATTCAAATGGAACAACATGAAATAGTCTTGTGTACAGATAGTAATAGGTGAAGTTAGATGGAAAAGGAGAGTAAATAAACTCTCTTTCTACCCTAATATGCTGGAAATATGGTTCTACTTTGTTTTTATTTTGCAACAAGGCAAGTGTAGTTTTCAATGTATTATTGAGTTTGATTAGATCTAATAACAGTCTAGTGAGTACAATCTAGATGTATAGGAGCACATGATTATTGTATTATGCTGTTGTTTATTGGAATTTAACTATGTTATTAGTTGATTCCAAA--AAAAAAAAAAAAAAAACTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214025" ref_strand="+" ref_description="SGN-E214025 [cLEC-80-N22]">
      <seq>aagtccagacactgaccgataaaaaggcgaaatgctcgtgtacaagtaagcagctgcaatattcaaatggaacaacatgaaatagtcttgtgtacagatagtaataggtgaagttagatggaaaaggagagtaaataaactctctttctaccctaatatgctggaaatatggttctactttgtttttattttgcaacaaggcaagtgtagttttcaatgtattattgagtttgattagatctaataacagtctagtgagtacaatctagatgtataggagcacatgattattgtattatgctgttgtttattggaatttaactatgttattagttgattcaaaactttataagacaaataatatcgattggaaagagtaattccannnnannaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="289" stop="1272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="482" g_stop="489" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="490" i_stop="595" i_length="106">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="596" g_stop="963" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="376" r_length="368" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="393" polyA_stop="403"/>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E214025" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="482" e_stop="489"/>
          <exon e_start="596" e_stop="963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCCAGGTAATGACCAAAAAAAGTGTTTTTTCTCCATGAAGTACTCACATGAATCAATCTCTCAAGCAACATTTATATCTTCTTTACCAAATTTACACTTATTTAATGCCAGACACTGACCGATAAAAAGGCGAAATGCTCGTGTACAAGTAAGCAGCTGCAATATTCAAATGGAACAACATGAAATAGTCTTGTGTACAGATAGTAATAGGTGAAGTTAGATGGAAAAGGAGAGTAAATAAACTCTCTTTCTACCCTAATATGCTGGAAATATGGTTCTACTTTGTTTTTATTTTGCAACAAGGCAAGTGTAGTTTTCAATGTATTATTGAGTTTGATTAGATCTAATAACAGTCTAGTGAGTACAATCTAGATGTATAGGAGCACATGATTATTGTATTATGCTGTTGTTTATTGGAATTTAACTATGTTATTAGTTGATTCAAAACTTTATAAGACAAATAATATCGATTGGAAAGA</genome_strand>
        <mrna_strand>AAGTCCAG..........................................................................................................ACACTGACCGATAAAAAGGCGAAATGCTCGTGTACAAGTAAGCAGCTGCAATATTCAAATGGAACAACATGAAATAGTCTTGTGTACAGATAGTAATAGGTGAAGTTAGATGGAAAAGGAGAGTAAATAAACTCTCTTTCTACCCTAATATGCTGGAAATATGGTTCTACTTTGTTTTTATTTTGCAACAAGGCAAGTGTAGTTTTCAATGTATTATTGAGTTTGATTAGATCTAATAACAGTCTAGTGAGTACAATCTAGATGTATAGGAGCACATGATTATTGTATTATGCTGTTGTTTATTGGAATTTAACTATGTTATTAGTTGATTCAAAACTTTATAAGACAAATAATATCGATTGGAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234752" ref_strand="+" ref_description="SGN-E234752 [cLEL-6-M3](-)">
      <seq>aatgctcgtgcacaagtaagcagctgcaatattcaaatggacacacatgacatagtcttgtgtacacatagtaataggtgtactaagatgaaaaaggatagtaaatatactctctttctaccctaatatgctggaaatatggttctactttgtttttattttgcaacaagccaagtgtagttttcaatgtattattgagtttgattagatctaataacagtctagtgagtgcaatctagatgtataggagcgcatcaatactgtattatgctgttgtttattggaatttaactatgttattagttgattcaaaactttataagacaaataatatcgattggaaagagtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="318" stop="1267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="618" g_stop="963" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="349" polyA_stop="366"/>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E234752" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="618" e_stop="963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCTCGTGTACAAGTAAGCAGCTGCAATATTCAAATGGAACAACATGAAATAGTCTTGTGTACAGATAGTAATAGGTGAAGTTAGATGGAAAAGGAGAGTAAATAAACTCTCTTTCTACCCTAATATGCTGGAAATATGGTTCTACTTTGTTTTTATTTTGCAACAAGGCAAGTGTAGTTTTCAATGTATTATTGAGTTTGATTAGATCTAATAACAGTCTAGTGAGTACAATCTAGATGTATAGGAGCACATGATTATTGTATTATGCTGTTGTTTATTGGAATTTAACTATGTTATTAGTTGATTCAAAACTTTATAAGACAAATAATATCGATTGGAAAGA</genome_strand>
        <mrna_strand>AATGCTCGTGCACAAGTAAGCAGCTGCAATATTCAAATGGACACACATGACATAGTCTTGTGTACACATAGTAATAGGTGTACTAAGATGAAAAAGGATAGTAAATATACTCTCTTTCTACCCTAATATGCTGGAAATATGGTTCTACTTTGTTTTTATTTTGCAACAAGCCAAGTGTAGTTTTCAATGTATTATTGAGTTTGATTAGATCTAATAACAGTCTAGTGAGTGCAATCTAGATGTATAGGAGCGCATCAATACTGTATTATGCTGTTGTTTATTGGAATTTAACTATGTTATTAGTTGATTCAAAACTTTATAAGACAAATAATATCGATTGGAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235040" ref_strand="+" ref_description="SGN-E235040 [cLEL-6-M3](-)">
      <seq>aagtaagcagctgcaatattcaaatggaacaacatgaaatagtcttgtgtacagatagtaataggtgaagttagatggaaaaggagagtaaataaactctctttctaccctaatatgctggaaatatggttctactttgtttttattttgcaacaaggcaagtgtagttttcaatgtattattgagtttgattagatctaataacagtctagtgagtacaatctagatgtataggagcacatgattattgtattatgctgttgtttattggaatttaactatgttattagttgattcaaaactttataagacaaataatatcgattggaaagagtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="331" stop="1267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="631" g_stop="963" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="336" polyA_stop="353"/>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E235040" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="631" e_stop="963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAAGCAGCTGCAATATTCAAATGGAACAACATGAAATAGTCTTGTGTACAGATAGTAATAGGTGAAGTTAGATGGAAAAGGAGAGTAAATAAACTCTCTTTCTACCCTAATATGCTGGAAATATGGTTCTACTTTGTTTTTATTTTGCAACAAGGCAAGTGTAGTTTTCAATGTATTATTGAGTTTGATTAGATCTAATAACAGTCTAGTGAGTACAATCTAGATGTATAGGAGCACATGATTATTGTATTATGCTGTTGTTTATTGGAATTTAACTATGTTATTAGTTGATTCAAAACTTTATAAGACAAATAATATCGATTGGAAAGA</genome_strand>
        <mrna_strand>AAGTAAGCAGCTGCAATATTCAAATGGAACAACATGAAATAGTCTTGTGTACAGATAGTAATAGGTGAAGTTAGATGGAAAAGGAGAGTAAATAAACTCTCTTTCTACCCTAATATGCTGGAAATATGGTTCTACTTTGTTTTTATTTTGCAACAAGGCAAGTGTAGTTTTCAATGTATTATTGAGTTTGATTAGATCTAATAACAGTCTAGTGAGTACAATCTAGATGTATAGGAGCACATGATTATTGTATTATGCTGTTGTTTATTGGAATTTAACTATGTTATTAGTTGATTCAAAACTTTATAAGACAAATAATATCGATTGGAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243101" ref_strand="+" ref_description="SGN-E243101 [cLEE-2-C1]">
      <seq>caaattacatatcctcaacaacaacacttcaacaaattacatatcctcaacaagaatagttcaacaaattatatatccgccataacaagctcaatattaatcaatcacaagttctgcagaaaggcaataagaagatcgagaaaatacgatatcaagttcactaatgataagtgtgtaatgcaatggaatgcaatgtcaagtataatgatgcatgtctgacctagtgatatacacccgctgtctctcagtccgggacccttgggggacatatctgtccatgcatctgtcgcggcgcacgacacgatcctcgataatagtaaccatcacggcgcgcgatacgttcctcgaaatatagtatccatcgcggcgcgcgatacgtccctcgaaatggtacatcctcttaagtacccattatttctcaatgcacataacacttgccacaaccaatgcctcagaataatgcagatgacaagttcacacatataatgaggagatgaccattttcataacatcctacagttcacaaccacacaaacatcaagttacatcaacaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="3846" stop="4957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4146" g_stop="4657" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="557" r_length="512" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E243101" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4146" e_stop="4657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACAACAACACTTAGACAAATTACATATCCGCAATAACAAGCTCAATATTGATCAATCGCAAGTTCCGCAGAAAGGCAATCAGAAGATCAGCAAAATACGATACCAAGTTCACTAATGATAAGTATGTGCAATGCAATGGAAAGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACACGAACCTCGATAATAGTAACCATCGCGGCGCGCGATACGTCCCTTGAAATATAGTATCCAT--CGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTCTTTCTCAATGCACATAACACTTGTCACAACCAATGCCTCAGCATAATGCAGATGAGAAGTTCACACAAGTAATGAGGAGATGACCATTTTCATAACATCGCACAGTTCACAACCACACAAACATGAAGTTACATCAACAATGA</genome_strand>
        <mrna_strand>CTCAACAAGAATAGTTCAACAAATTATATATCCGCCATAACAAGCTCAATATTAATCAATCACAAGTTCTGCAGAAAGGCAATAAGAAGATCGAGAAAATACGATATCAAGTTCACTAATGATAAG--TGTGTAATGCAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATATACACCCGCTGTCTCTCAGTCCGGGACCCTTGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACACGATCCTCGATAATAGTAACCATCACGGCGCGCGATACGTTCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTATTTCTCAATGCACATAACACTTGCCACAACCAATGCCTCAGAATAATGCAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTTCATAACATCCTACAGTTCACAACCACACAAACATCAAGTTACATCAACAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283587" ref_strand="+" ref_description="SGN-E283587 [cLES-1-C17](-)">
      <seq>ctcccgtccatcagatgcagcaatattatagacttggtgcccttgataattgtagtaagaaatggagtggtctcgttgattgtctgactttaaaaaccaaaaggtcttctgaagtggaggaaattttagaaacacgcgagaaagcgaagcctcacctgtggtcaacacgaacccctgaagaagccgcagcttattggagcgaactctttgaccatctagatgaagagtaaaactcttaagaccttttcatcagacatttgctcaatcaatacgagaaagtttattatatcatttgaaataatcttctccccaatgatgcttgtttcaaacatgtcttagaggcaccatggttatcaaagtgggtttctaaagaggcaccagtttaggaatgtttagaataggaacattgtgtaggaaaatcttctttttccttgagtgattgaagcagcataaacaaattccaacaatcttaaacgtcagagtaacaccaccttctgattcagatgaactgtggagcttatcattgcattataaagagatggaacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="12570" stop="10369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12270" g_stop="12152" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12151" i_stop="11101" i_length="1051">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11100" g_stop="10666" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="554" r_length="435" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E283587" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12270" e_stop="12152"/>
          <exon e_start="11100" e_stop="10666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCGTCCATCAGATGCAGCAATATTATAGACTTGGTGCCCTTGATAATTGTAGTAAGAAATGGAGTGGTCTCGTTGATTGTCTGACTTTAAAAACCAAAAGGTCTTCTGAAGTGGAGGTACAGTGTTCTCTTGCATCATTGTCTGGACTGTTCACAATGTTCTTTTTTCGCCTGAGTCATTCAACGCAAGGTTTATTCAATTGCTAGAATGTCGAAACAATAAAATTATTTGTGAGGATGAGGAATATAATTTTATTGTTTCGACATTCTAGCAATTGAATCTGAGTCTCTCCAAATTATAACTCTTTGATTAGAATAATTGTTGCTATAATATCAGAAAAGGAGGTATACTAACACAAAACTTCTCAACTGGGGGAGGTCTTGGATGCAAGTTTTGCTGATGTGCAGCTTTGCTTTTTTGCTTTTTATGTTGTCGAAAACACTTCTAATTTGTTGATAGTCCCATTTAACTGCTCAAATCCTGGGGATTGAAGTAAAGGAGGTATTTTAAATGAGATTAAACTAGAGGGTACATTTTAGGTATTTCACAAACTAGGAGAAGATTCATTTAATTTTGCCAAACCCGAGGTAATGCCTCACCTAGTCACCCCTCACCTACAATTGGTGTGCCTCAACCCATCCAAATTTTTGAGTATGGCTGATAAATTGGTTGTGATTTCATTTGTCAACCACAGTCTTGTGTTGCTGACTTAGGCAGTAATGCTATGGTATTTGCTTTTAATGAGGTTGCTGAGCTAGCAATTTCTCTTTTCGGATGGATGCTTCTCTGAAGATGTTATTATAGATGCAGAGGGTTTTTTTAAAAATCAATAAATACAAAATTTATCATGTGGGAATTTTGTTAGAGCTTTAAGTTGTATACACCGTCAGTGCATGCAATTTTTTACACATTAGGTCATTTAATGGATATTTATAGGTAAGCCTCCTTTAGTTGTGGGACTTGAAATTTTAATAATGAGATATATTACCTGAATACCTGCTATAACAAGTAAAGATGATCTGGTAACAAGTAAAGATGATCTGATAGTGTAAAAAATACTCACACTGACGGTGTTCTTCCCTATATATGCTCGTGAAGTCACTTCTGCTTTCTGTATTATTTTGTTGATTTTGTTTATCATACTCATCATTAGATCATGTGAAGCAGGAAATTTTAGAAACACGCGAGAAAGCGAAGCCTCACCTGTGGTCAACACGAACCCCTGAAGAAGCCGCAGCTTATTGGAGCGAACTCTTTGACCATCTAGATGAAGAGTAAAACTCTTAAGACCTTTTCATCAGACATTTGCTCAATCAATACGAGAAAGTTTATTATATCATTTGAAATAATCTTCTCCCCAATGATGCTTGTTTCAAACATGTCTTAGAGGCACCATGGTTATCAAAGTGGGTTTCTAAAGAGGCACCAGTTTAGGAATGTTTAGAATAGGAACATTGTGTAGGAAAATCTTCTTTTTCCTTGAGTGATTGAAGCAGCATAAACAAATTCCAACAATCTTAAACGTCAGAGTAACACCACCTTCTGATTCAGATGAACTGTGGAGCTTATCATTGCATTATAAAGAGATGGAACAAAACACTA</genome_strand>
        <mrna_strand>CTCCCGTCCATCAGATGCAGCAATATTATAGACTTGGTGCCCTTGATAATTGTAGTAAGAAATGGAGTGGTCTCGTTGATTGTCTGACTTTAAAAACCAAAAGGTCTTCTGAAGTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTTTAGAAACACGCGAGAAAGCGAAGCCTCACCTGTGGTCAACACGAACCCCTGAAGAAGCCGCAGCTTATTGGAGCGAACTCTTTGACCATCTAGATGAAGAGTAAAACTCTTAAGACCTTTTCATCAGACATTTGCTCAATCAATACGAGAAAGTTTATTATATCATTTGAAATAATCTTCTCCCCAATGATGCTTGTTTCAAACATGTCTTAGAGGCACCATGGTTATCAAAGTGGGTTTCTAAAGAGGCACCAGTTTAGGAATGTTTAGAATAGGAACATTGTGTAGGAAAATCTTCTTTTTCCTTGAGTGATTGAAGCAGCATAAACAAATTCCAACAATCTTAAACGTCAGAGTAACACCACCTTCTGATTCAGATGAACTGTGGAGCTTATCATTGCATTATAAAGAGATGGAACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284976" ref_strand="+" ref_description="SGN-E284976 [cLER-19-I23]">
      <seq>gcccacccaaccccgatccacctttgatcggtgcccatcccacccattccgaccggcgctgcatagatcagcagcagcaggaggtcgcgccaccttccccgaccggagctccgtgcgcctcgatcagcagcagcagcagcaggaggaggaggtcgcagcatcaccgcagaggcggcagcagcaacagcaaattccggcagattagtgatttagcttcagccggaaattgatcttcaatgtcaggagaagttcagatgagttcagaaaagcaaccacgaagaggactgtcatgcacccgttacttcgatgcactctggttctgctactgaaattttagaaacacgcgagaaagcgaagcctcacctgtggtcaacacgaacccctgaagaagccgcagcttattggagcgaactctttgaccatctagatgaagagtaaaactcttaagaccttttcatcagacatttgctcaatcaatacgagaaagtttattatatcatttgaaataatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="19611" stop="10615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19311" g_stop="19107" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19106" i_stop="15473" i_length="3634">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.405" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15472" g_stop="15351" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="327" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15350" i_stop="11101" i_length="4250">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11100" g_stop="10915" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="513" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E284976" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19311" e_stop="19107"/>
          <exon e_start="15472" e_stop="15351"/>
          <exon e_start="11100" e_stop="10915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCACCCAACCCCGATCCACCCCTGATCGGCGCCCATCCCACCCATTCCGACCGGCGCTGCATAGATCAGCAGCAGCAGGAGGTCGCGCCACCTTCCCCGACCGGAGCTCCGTGCGCCTCGATCAGCAGCAGCAGCAGCAGGAGGAGGAGGTCGCAGCATCACCGCAGAGGCGGCAGCAGCAACAGCAAATTCCGGCAGATTAGGTAGTGTAATCAAGCTCTTTTATTGTAATTATTTTATAGGGTTGGATGATATTATTATTAGTATGTATTGCTGGAAGTTTGGATAAAAATAATAAACAAGTGTCATCAATAGGTTGGGTTGAACAAATTGAAGGGTTGATTCAATTGAATTTGGTTGTTGTTCAATGTGGATCCTTTGGTTGAGTTTATACACTTCAAAATTTGAACACTTAAATGTGTTCAATTGAGTTTGATTGCTCGTTCTCTTTGATTAACTGTTAAGTGCCAAACTTTCCCATAAGGATGTTGATTTTGGCAAGTTGGACAGTCAATATATTGAAAACGGTTAGAGAATGTTAGTGCATGTTGAATTTTTGTCTAAATTAGTATTTTGCTGTTACAGAGTATCTATGTTTTAGTTGCTCTAATAAACTAGTGACAGTTGCTCTAACAAACTAACCAATACAACATATGCCCATGTCATCATATACAATTCTACCTTTCCAATATTGGACAGTCATACCAATTACATGTGTATGCCTTACAATTCTAACATATACATTACAATAACTAGTGGAAAAAAGAGAGGAAGTATTAAAAATAGGAGAAACCTATTTTGAATTATCAAGAAAACAAAAAAACAACACAAACTTGTTCACTAAGTGTCAACTGTTAATGTTAATAATGACTGAAATCTCTCTATGATGACCACTAAAGAAATTTTCAATTGTTTCTTTTCGCGCTAGGCAACTGAGGAAGCTTAACATCTAAAAAAGTTGATACAAGACTATACTACTTCTTTCATCAAATAGCAGATAAGGTTCGGTGTTTCTAAATTTTTGAAGTTCAAGTACAACTGATTTTTTAATGTGTTTGTGTCCATCTAGTATTGATACTTAACTTTAATTTTGTAATAGTTTATTTGTGTCCATCGAGTGCTTGTTTAGCATAAGTACCAACACTAGTTGATCCCATTGATTACAAAATTGATTTTCTTGCAAAATCGATTTGTGCCCATCTAGTGTTGACACTAAGCTTCAAATTTAGAAATAATATATTTGTTAAGCATAAGTACCAACACTAGTTGATCCTATTGATGACAAAATTGATTTTGTTGCAAGATTTATTTGTGTTCATCTAGTGTTGATATTAAGCTTTAATTTAGGAATAATGTGTTTGTTAAGCATAAGTACCAGTGCTAGTTGATCCTATTGATGACAAAATTGATTTTCTTGCAAGATCGATTTGTGTCCATCTAGTGTTGATATTGAGCTTTAATTTAGAAATAATGTGTTTGTTAAGGATAAATACCAACACTAATTGATACTATTGATGACAAAATTGATTTTCTTGCAAGACCAATTTGTGTCCATCTCGTGTTGATATTAAGTTTTAATTTAGGAATAATGTGTTTGTTAATCATAAGTACCAACACTAGTTGATCCCATTGATGACAAAATTGATTTTCTTTCAATATTGGAGTTTGATTATGACTGGGATTTGGGCGTTTGTGTGTTGAGGCTGTGGGTCTGGGCATTTGTGTGCTGATGCAGATGCTCAAAATCAAAAGAAGGGAGAGTTGCCTTTTGTTCTTTGTCATTTTGATTTTCCCTTTTTGCTTTGTCTGGTTATAGCTAATCTGTATATAGGGGAAAACATCAAGCTTTGAGGGATGGTGCTATGAATCTACTTATTTTTTAATGTAAATAATTTGAAGGTGGTGCAAGTGGATGTTGTTTCTTTTCGAAGACAAGGTTTTATGTCATTTAGCTTTATCCATGTTCATCTAGTTTATTCTCGATCATGCCTTTGGTCTAGCCTTTAGCTTAGAAGGATTTGAAGAGAATATAGGATTGTGGATAATCCTATTCCTTCTTCTTTTTTATTGTACTTTTTTCCTTCTTTTCCTTTGTTCTTCACTTCAAAGTCAAGTTGCATCTTGTCCATTTGGACACTACAACCTTGGTTAATTGAAATAATTTAGTACTCCCTCTATTTATTTGATGCGTCATAATTTTTAGGCACTTTTAAAGAAGAATGCTATTCATATGTATTTATAGAACAGATTTATCTGCTTATGTATCCAGTTTGTCACTTGATTATTTCTACTCTGCTTGTTCTCATTCACTTGTTTCCACCTTTCTAATGTTTAGATCAATGGGAAATACTTTTATTTTTTCTAGAATAAAAATAGGAAGATTGCTACTTTGTTTAAAAGAAAGAGGAAGAGTCATTCCAGAGATGAACCTGACTTATTGATGATGAATTTAAACCATAAGAATTGGAAATAAAATATGCTTTTCGTGTCGATTCCACCCATCTATTGGTACCATTTGGATTATTTACGCTGATACCCTATGCCTAAAAGTCTGACGGCCTGAGTTGCTGGACAATGGGTTTACCATTCAGCATTTTCTGGTTTTATAGTTTACACTCCTTATTCGACTTGAGGTTCAAGAACCGAGGAGAATGAGGAAAAATTCAAAGAAGAAAGAGATAGTGACTAATGTTTTACTCTCTCCGTTTAAAAAAGAATGACCTCCTTTCCTTTTTAGTCTATTCAAAAAGAATGATCTCTTTCTTTTTTTGGTAACATTTTAACTTTAGTTTTCCACGTGACATGTTTAACGCCACAAGATTAAAGAGCAATTTTGTACATTTGGGATAACTTTAATTTAGGACCACAAGATTCAAGAGTTTCTTTATTCACTTAAACTCCGTGTCAAGTCAAACTAGGTCATTCTTTGTGAAGGAAGGAGTGATAAAATATGCTATTGTATCTTCGTTGTTTTCTGTTTGTAGTAGTCCTTGTCGTAATATTAACATTTTAGTAGTTTCTTCTTTTCAATTTAGGATGATTAAAATCAAAGATAGCTAGCATAGTTATCATTTTTTTGTCATGATATTATCATTTCCTTAGTTTCTGCTTTTCATTCATTGCCTCCAATGTCTATTCGTGACAATAGTTAAAATTGGTTGCACTAATGCCCATCTTGAAGTGAATTCCCTTTAATTATTATCCTTTTGGTTCTCTTCAAAACATGGAGAGGAGTATTGTTCTTTGTGCTTTTTATTGGTTTCTTCTAGTTGTAGTTTTCTTAATTTCTATCTTAACTGATTTTAGACAGATGGAAACTGCAATGCTAAGCCAGGAGATGCTGATTTATGTAGCAGCAGTTAATATCACATAACTTTGTTATAGATCTTAATCATTTAGATCTATTTAGACCTATAAGTGATTGTATAATAAAAAGGACGCATAATGTTGAAGATCTAAATGAATTTTATTGGAGAGAGAAGGAACATTAGATATGAATATGTATCATTTAGATCTTAAATATTATGTGTGTTTTCTAATGCTCCTATCTAATGTTCCTTCTCTCTCCTGGGAACAGTGGGTGATTATTGGAGTTTTTCAAGTTTCCACTCACAAAACGTGAATTTTGTTCTCATGTAACTATCACTTTTTATCTTAACTTCAAGTATTTCTTTCCTTTTTTCCTTTCAAATCTCAACCAATTTATGTTCAAATGCCTGTTTAAAATGGTTTGTTTGTTTGTGTGTGTGGGTTGGGGTTGGGGGGGTGGGGAGTTTACCACAATTCATCCATATTCTTCGCAGAAGTCTAAATGCAGCTATCAAAATTTTCTAACAGTGATTTAGCTTCAGCCGGAAATTGATCTTCAATGTCAGGAGAAGTTCAGATGAGTTCAGAAAAGCAACCACGAAGAGGACTGTCATGCACCCGTTACTTCGATGCACTCTGGTTCTGCTACTGTAAGTTGAATTTCTTTAGCTTTATTCATTTGTTGACTGTAATTTTGATAAGGATTTATATGCTCTAAACCATCAAATCTCCTGATCATTAAGACCCTCTTAAAGATGCCTAAAGTTTGATGGTTTTTTGTATGTGGAATCTTGCATCTTCTTCTTAGCGTTGAAACTGAAAATGTGTGTCGGCCTAAAAAATGAATGCAGTTAATTTTTACTTCTTCTTACTTCTATAGCTACTTCAGATTGAGTTTCTTTCTTTACCGAAAATAAGTGCAGACGTCATTAACGTTCGTAAAGCACTGTACAGGCTAGTTATTTCAATTGGGTTCTTTCTTGTGATAAGGGTTGAATCTGACTTTTTTTTGTGTGTACTTAATGATGTTCTCTTATGCTATGCATCTTTATTTTGTGTAACCTGATTTGTATACTCTGACATGTTATATTTGCCAGTATACCTAATCAAATCATCATTTTTTTCTCTTCATAGTCTAACTACGTTTAGGGTGCAGGGCTTTATGCTTTAGGTATCAAAATTCATGTAATCACTATTTAGTAATAGCAACCAAATGGCACGTTTGGAGAACGTAATCGTTAGGCATCAGTGTTATGCTTTTGGTATTTACTGTAGTCTGTATGTGAGGATTCAATTTGTCTTGAACATTGTTTCGAGATACCAATATCCAGTAATCCTTGTTTAGAAATACAATTGTCAGCTGACATATTTCTAATTTGTCACTACAAGAAACTAATTACTGTGTGAATTATATATAGACATATTGGTTATTGTGTGGATGATAGGCAGATCTTGCCAGTCCACCAGGTCATATGAAGCTTGTTGCATCATGGCTCTCAAGAATGACAGTACCAATAACATTCTCCTACTTGATCAAAAACCCACAGGAGAAGGGTTAGACTCCTATCTATAGTATGAGTAATTAAAGCAAGTGAACAATTTGAAATCCGAGTTATATTTTGTGCAAGAGGTCTTTGCTAGTTGTTGATTTTGAAAGAGAAAAAGATCTTCAGTTTCTGTAAATCACAGAAGGTTGAACGAGACTCTTTCTAAAGTATGAGTTTGAAGGAGGATCACCCTTTTTATTGTTGGAATGGAACTGGTGCCCTATCCCAGCTCAATAACGGAATTTATTTTCTACTCTGCTAAGCTGAAGTCTATGGCACAGGATAGCACTTGGACCAGCCTTTCAGATGTAGTAATATGGTTCTTGAGGTGTGTCTGTGCGCATGCCAAAATTGTGAAAGCAATAGGCTACAGGTTGCAATGAGCCAAAGGCTATTAAATCTAGTGCTGCAACTGACATTGAGTTTTTTTGATAGGGATAAAGAAAAGAAAGGCGAAACTCATATCATTCAACCAGGAAGTACTTTCTGGCTGGTACATTTAAGGCAGATTCTAGATATTGCATCACAATCATTTCTTTTTGCAGATTGAATGGAGTTTCACTTTAGAACCTATGAATTTATTGTGCAACAAGTAGGTTTTCTACTTTGGAACCTTTAGGGATCGTTTGGTTGGGAACAAGTTATCTGAGATAATTTATCCCACCATGTATATGGGATAACTTATCCCATCACTATGATATAAATGGTGGGATAACTTATCCCATCACTATGATATAAATGGTGGGATAAGTTATCTCAAAATGGCAACCATACAAGATATAAAATTTTTATCCTATCACTATTTATTTTTATCACTCTCACCAAACGACCCCTTAGAGTGCAACAATCAACCTGATCTTGTGCCACATCAGAACAAGAAATATCCGACTTTTTTATCCAATGAAACCCCGAATTGATTGGTTGGAGTTGTGATTCATAGTAACCCACTTAGAGCCCTTTTGGCTTAACTTAAAAAAAGTAGCTTTTTGAAAGTAGTTTTTAATAAGTCGAACTTTAGTAACTTTTAAGTTGAAAAATGAAAAGTAGGGGAGCTACTTTTAACTTTTAACTTTTTTAAAGTCATTTAAAACTTATATTAAGTTATTTTTAACTTTGCCAAACATATCAAAAAGCTAAATATGACTTAAAAGTAGTGACCAACTTTTAAGCCAATCCAAACAGGCTGTAAATTTTGTTAGAAAGATGGGAAATTAACCTGAATCAAAGGCTTTCCAACAAAAAGCTCACTTGTAATAAACTTGAAGTCAATATCTAATACACTATGTAATCGATTCATATATTTGACGATGGAAGGAGAAAGAGAGGATGGACAGATGACCAAACAATAGCAGAATTTCACTTGATCATCCTTTCAGTTGAAAACATTATTGATTCCCTTTTTTTGGCACCTTGCGATGAATAGTTGGAAAATTACTGTTTGTAAACATATGATTGCCTTAAACGACGATTTCGTAATTGATTAAACAAATGGTAGACGCAGGAGGCTAGTGAATTGCTTATGAAAATATGTTAGTAGTCTTGATACTAACAAATGTGAGACTGGTGTTGGGGTTGTCAGCCGAAAGCTTTGCAAGCATAGATTCTTCAAGGATCTAGACTGCTGTTTAGCTATGCTGGGGTCTTCAAAAGACAAGTGTTGCACTGATCCTTGCCTTTAGTAATCTTAGTTAATCCGCTGCAACTGAGGGGAACTATTAAACACAATAGGGTTATACTGTACTATTAACTTGCTGTATCTTAAGTGATGTGAGTCTTGCTCTTGATTTTTGATGACACTTACGATATAGTTTGCTGCTAGTTTCACTCCTAAAAACTTCTTTTCTATTTGTTCTTTCTCCGTCCTTGTTTAGGATTGAAATTCACGGAAGCTGATTATTTATTTGAGCGACATGCATTTAGACGTTTTCAATAACAAAATGATTCATTTACATGCTGAGAAGGAAACACAATTCTAAACTGAAAAAGAAGGCTCATCACCATACATTCTGTTATATTGCTGTTGTTAATAAATAAGTTTTGGTTGCAATGTCTGTAAGAATATATGAACCAAGTTCAAAGTTAATATCAGTGCGACTTATATGATATCTGTTTGTCTTCTGTTATTACATGCACTTTCTTCTTTGAGAATTAGTTTAGGCTGATGTGTAATTATGTTGTGGCAGCTCCCGTCCATCAGATGCAGCAATATTATAGACTTGGTGCCCTTGATAATTGTAGTAAGAAATGGAGTGGTCTCGTTGATTGTCTGACTTTAAAAACCAAAAGGTCTTCTGAAGTGGAGGTACAGTGTTCTCTTGCATCATTGTCTGGACTGTTCACAATGTTCTTTTTTCGCCTGAGTCATTCAACGCAAGGTTTATTCAATTGCTAGAATGTCGAAACAATAAAATTATTTGTGAGGATGAGGAATATAATTTTATTGTTTCGACATTCTAGCAATTGAATCTGAGTCTCTCCAAATTATAACTCTTTGATTAGAATAATTGTTGCTATAATATCAGAAAAGGAGGTATACTAACACAAAACTTCTCAACTGGGGGAGGTCTTGGATGCAAGTTTTGCTGATGTGCAGCTTTGCTTTTTTGCTTTTTATGTTGTCGAAAACACTTCTAATTTGTTGATAGTCCCATTTAACTGCTCAAATCCTGGGGATTGAAGTAAAGGAGGTATTTTAAATGAGATTAAACTAGAGGGTACATTTTAGGTATTTCACAAACTAGGAGAAGATTCATTTAATTTTGCCAAACCCGAGGTAATGCCTCACCTAGTCACCCCTCACCTACAATTGGTGTGCCTCAACCCATCCAAATTTTTGAGTATGGCTGATAAATTGGTTGTGATTTCATTTGTCAACCACAGTCTTGTGTTGCTGACTTAGGCAGTAATGCTATGGTATTTGCTTTTAATGAGGTTGCTGAGCTAGCAATTTCTCTTTTCGGATGGATGCTTCTCTGAAGATGTTATTATAGATGCAGAGGGTTTTTTTAAAAATCAATAAATACAAAATTTATCATGTGGGAATTTTGTTAGAGCTTTAAGTTGTATACACCGTCAGTGCATGCAATTTTTTACACATTAGGTCATTTAATGGATATTTATAGGTAAGCCTCCTTTAGTTGTGGGACTTGAAATTTTAATAATGAGATATATTACCTGAATACCTGCTATAACAAGTAAAGATGATCTGGTAACAAGTAAAGATGATCTGATAGTGTAAAAAATACTCACACTGACGGTGTTCTTCCCTATATATGCTCGTGAAGTCACTTCTGCTTTCTGTATTATTTTGTTGATTTTGTTTATCATACTCATCATTAGATCATGTGAAGCAGGAAATTTTAGAAACACGCGAGAAAGCGAAGCCTCACCTGTGGTCAACACGAACCCCTGAAGAAGCCGCAGCTTATTGGAGCGAACTCTTTGACCATCTAGATGAAGAGTAAAACTCTTAAGACCTTTTCATCAGACATTTGCTCAATCAATACGAGAAAGTTTATTATATCATTTGAAATAATCTT</genome_strand>
        <mrna_strand>GCCCACCCAACCCCGATCCACCTTTGATCGGTGCCCATCCCACCCATTCCGACCGGCGCTGCATAGATCAGCAGCAGCAGGAGGTCGCGCCACCTTCCCCGACCGGAGCTCCGTGCGCCTCGATCAGCAGCAGCAGCAGCAGGAGGAGGAGGTCGCAGCATCACCGCAGAGGCGGCAGCAGCAACAGCAAATTCCGGCAGATTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTAGCTTCAGCCGGAAATTGATCTTCAATGTCAGGAGAAGTTCAGATGAGTTCAGAAAAGCAACCACGAAGAGGACTGTCATGCACCCGTTACTTCGATGCACTCTGGTTCTGCTACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTTTAGAAACACGCGAGAAAGCGAAGCCTCACCTGTGGTCAACACGAACCCCTGAAGAAGCCGCAGCTTATTGGAGCGAACTCTTTGACCATCTAGATGAAGAGTAAAACTCTTAAGACCTTTTCATCAGACATTTGCTCAATCAATACGAGAAAGTTTATTATATCATTTGAAATAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283586" ref_strand="+" ref_description="SGN-E283586 [cLES-1-C17]">
      <seq>tctcacgcccacccaaccccgatccacccctgatcggcgcccatcccacccattccgaccggcgctgcatagatcagcagcagcaggaggtcgcgccaccttccccgaccggagctccgtgcgcctcgatcagcagcagcagcagcaggaggaggaggtcgcagcatcaccgcagaggcggcagcagcaacagcaaattccggcagattagtgatttagcttcagccggaaattgatcttcaatgtcaggagaagttcagatgagttcagaaaagcaaccacgaagaggactgtcatgcacccgttactcgatgcactctggttctgctactctcccgtccatcagatgcagcaatattatagacttggtgcccttgataattgtagtaagaaatggagtggtctcgttgattgtctgactttaaaaaccaaaaggtcttctgaagtggaggaaaatttagaaacacgcgagaaagcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="19617" stop="10772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19317" g_stop="19107" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19106" i_stop="15473" i_length="3634">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.405" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15472" g_stop="15351" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="332" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15350" i_stop="12271" i_length="3080">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12270" g_stop="12152" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="451" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12151" i_stop="11101" i_length="1051">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11100" g_stop="11072" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="480" r_length="29" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E283586" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19317" e_stop="19107"/>
          <exon e_start="15472" e_stop="15351"/>
          <exon e_start="12270" e_stop="12152"/>
          <exon e_start="11100" e_stop="11072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCACGCCCACCCAACCCCGATCCACCCCTGATCGGCGCCCATCCCACCCATTCCGACCGGCGCTGCATAGATCAGCAGCAGCAGGAGGTCGCGCCACCTTCCCCGACCGGAGCTCCGTGCGCCTCGATCAGCAGCAGCAGCAGCAGGAGGAGGAGGTCGCAGCATCACCGCAGAGGCGGCAGCAGCAACAGCAAATTCCGGCAGATTAGGTAGTGTAATCAAGCTCTTTTATTGTAATTATTTTATAGGGTTGGATGATATTATTATTAGTATGTATTGCTGGAAGTTTGGATAAAAATAATAAACAAGTGTCATCAATAGGTTGGGTTGAACAAATTGAAGGGTTGATTCAATTGAATTTGGTTGTTGTTCAATGTGGATCCTTTGGTTGAGTTTATACACTTCAAAATTTGAACACTTAAATGTGTTCAATTGAGTTTGATTGCTCGTTCTCTTTGATTAACTGTTAAGTGCCAAACTTTCCCATAAGGATGTTGATTTTGGCAAGTTGGACAGTCAATATATTGAAAACGGTTAGAGAATGTTAGTGCATGTTGAATTTTTGTCTAAATTAGTATTTTGCTGTTACAGAGTATCTATGTTTTAGTTGCTCTAATAAACTAGTGACAGTTGCTCTAACAAACTAACCAATACAACATATGCCCATGTCATCATATACAATTCTACCTTTCCAATATTGGACAGTCATACCAATTACATGTGTATGCCTTACAATTCTAACATATACATTACAATAACTAGTGGAAAAAAGAGAGGAAGTATTAAAAATAGGAGAAACCTATTTTGAATTATCAAGAAAACAAAAAAACAACACAAACTTGTTCACTAAGTGTCAACTGTTAATGTTAATAATGACTGAAATCTCTCTATGATGACCACTAAAGAAATTTTCAATTGTTTCTTTTCGCGCTAGGCAACTGAGGAAGCTTAACATCTAAAAAAGTTGATACAAGACTATACTACTTCTTTCATCAAATAGCAGATAAGGTTCGGTGTTTCTAAATTTTTGAAGTTCAAGTACAACTGATTTTTTAATGTGTTTGTGTCCATCTAGTATTGATACTTAACTTTAATTTTGTAATAGTTTATTTGTGTCCATCGAGTGCTTGTTTAGCATAAGTACCAACACTAGTTGATCCCATTGATTACAAAATTGATTTTCTTGCAAAATCGATTTGTGCCCATCTAGTGTTGACACTAAGCTTCAAATTTAGAAATAATATATTTGTTAAGCATAAGTACCAACACTAGTTGATCCTATTGATGACAAAATTGATTTTGTTGCAAGATTTATTTGTGTTCATCTAGTGTTGATATTAAGCTTTAATTTAGGAATAATGTGTTTGTTAAGCATAAGTACCAGTGCTAGTTGATCCTATTGATGACAAAATTGATTTTCTTGCAAGATCGATTTGTGTCCATCTAGTGTTGATATTGAGCTTTAATTTAGAAATAATGTGTTTGTTAAGGATAAATACCAACACTAATTGATACTATTGATGACAAAATTGATTTTCTTGCAAGACCAATTTGTGTCCATCTCGTGTTGATATTAAGTTTTAATTTAGGAATAATGTGTTTGTTAATCATAAGTACCAACACTAGTTGATCCCATTGATGACAAAATTGATTTTCTTTCAATATTGGAGTTTGATTATGACTGGGATTTGGGCGTTTGTGTGTTGAGGCTGTGGGTCTGGGCATTTGTGTGCTGATGCAGATGCTCAAAATCAAAAGAAGGGAGAGTTGCCTTTTGTTCTTTGTCATTTTGATTTTCCCTTTTTGCTTTGTCTGGTTATAGCTAATCTGTATATAGGGGAAAACATCAAGCTTTGAGGGATGGTGCTATGAATCTACTTATTTTTTAATGTAAATAATTTGAAGGTGGTGCAAGTGGATGTTGTTTCTTTTCGAAGACAAGGTTTTATGTCATTTAGCTTTATCCATGTTCATCTAGTTTATTCTCGATCATGCCTTTGGTCTAGCCTTTAGCTTAGAAGGATTTGAAGAGAATATAGGATTGTGGATAATCCTATTCCTTCTTCTTTTTTATTGTACTTTTTTCCTTCTTTTCCTTTGTTCTTCACTTCAAAGTCAAGTTGCATCTTGTCCATTTGGACACTACAACCTTGGTTAATTGAAATAATTTAGTACTCCCTCTATTTATTTGATGCGTCATAATTTTTAGGCACTTTTAAAGAAGAATGCTATTCATATGTATTTATAGAACAGATTTATCTGCTTATGTATCCAGTTTGTCACTTGATTATTTCTACTCTGCTTGTTCTCATTCACTTGTTTCCACCTTTCTAATGTTTAGATCAATGGGAAATACTTTTATTTTTTCTAGAATAAAAATAGGAAGATTGCTACTTTGTTTAAAAGAAAGAGGAAGAGTCATTCCAGAGATGAACCTGACTTATTGATGATGAATTTAAACCATAAGAATTGGAAATAAAATATGCTTTTCGTGTCGATTCCACCCATCTATTGGTACCATTTGGATTATTTACGCTGATACCCTATGCCTAAAAGTCTGACGGCCTGAGTTGCTGGACAATGGGTTTACCATTCAGCATTTTCTGGTTTTATAGTTTACACTCCTTATTCGACTTGAGGTTCAAGAACCGAGGAGAATGAGGAAAAATTCAAAGAAGAAAGAGATAGTGACTAATGTTTTACTCTCTCCGTTTAAAAAAGAATGACCTCCTTTCCTTTTTAGTCTATTCAAAAAGAATGATCTCTTTCTTTTTTTGGTAACATTTTAACTTTAGTTTTCCACGTGACATGTTTAACGCCACAAGATTAAAGAGCAATTTTGTACATTTGGGATAACTTTAATTTAGGACCACAAGATTCAAGAGTTTCTTTATTCACTTAAACTCCGTGTCAAGTCAAACTAGGTCATTCTTTGTGAAGGAAGGAGTGATAAAATATGCTATTGTATCTTCGTTGTTTTCTGTTTGTAGTAGTCCTTGTCGTAATATTAACATTTTAGTAGTTTCTTCTTTTCAATTTAGGATGATTAAAATCAAAGATAGCTAGCATAGTTATCATTTTTTTGTCATGATATTATCATTTCCTTAGTTTCTGCTTTTCATTCATTGCCTCCAATGTCTATTCGTGACAATAGTTAAAATTGGTTGCACTAATGCCCATCTTGAAGTGAATTCCCTTTAATTATTATCCTTTTGGTTCTCTTCAAAACATGGAGAGGAGTATTGTTCTTTGTGCTTTTTATTGGTTTCTTCTAGTTGTAGTTTTCTTAATTTCTATCTTAACTGATTTTAGACAGATGGAAACTGCAATGCTAAGCCAGGAGATGCTGATTTATGTAGCAGCAGTTAATATCACATAACTTTGTTATAGATCTTAATCATTTAGATCTATTTAGACCTATAAGTGATTGTATAATAAAAAGGACGCATAATGTTGAAGATCTAAATGAATTTTATTGGAGAGAGAAGGAACATTAGATATGAATATGTATCATTTAGATCTTAAATATTATGTGTGTTTTCTAATGCTCCTATCTAATGTTCCTTCTCTCTCCTGGGAACAGTGGGTGATTATTGGAGTTTTTCAAGTTTCCACTCACAAAACGTGAATTTTGTTCTCATGTAACTATCACTTTTTATCTTAACTTCAAGTATTTCTTTCCTTTTTTCCTTTCAAATCTCAACCAATTTATGTTCAAATGCCTGTTTAAAATGGTTTGTTTGTTTGTGTGTGTGGGTTGGGGTTGGGGGGGTGGGGAGTTTACCACAATTCATCCATATTCTTCGCAGAAGTCTAAATGCAGCTATCAAAATTTTCTAACAGTGATTTAGCTTCAGCCGGAAATTGATCTTCAATGTCAGGAGAAGTTCAGATGAGTTCAGAAAAGCAACCACGAAGAGGACTGTCATGCACCCGTTACTTCGATGCACTCTGGTTCTGCTACTGTAAGTTGAATTTCTTTAGCTTTATTCATTTGTTGACTGTAATTTTGATAAGGATTTATATGCTCTAAACCATCAAATCTCCTGATCATTAAGACCCTCTTAAAGATGCCTAAAGTTTGATGGTTTTTTGTATGTGGAATCTTGCATCTTCTTCTTAGCGTTGAAACTGAAAATGTGTGTCGGCCTAAAAAATGAATGCAGTTAATTTTTACTTCTTCTTACTTCTATAGCTACTTCAGATTGAGTTTCTTTCTTTACCGAAAATAAGTGCAGACGTCATTAACGTTCGTAAAGCACTGTACAGGCTAGTTATTTCAATTGGGTTCTTTCTTGTGATAAGGGTTGAATCTGACTTTTTTTTGTGTGTACTTAATGATGTTCTCTTATGCTATGCATCTTTATTTTGTGTAACCTGATTTGTATACTCTGACATGTTATATTTGCCAGTATACCTAATCAAATCATCATTTTTTTCTCTTCATAGTCTAACTACGTTTAGGGTGCAGGGCTTTATGCTTTAGGTATCAAAATTCATGTAATCACTATTTAGTAATAGCAACCAAATGGCACGTTTGGAGAACGTAATCGTTAGGCATCAGTGTTATGCTTTTGGTATTTACTGTAGTCTGTATGTGAGGATTCAATTTGTCTTGAACATTGTTTCGAGATACCAATATCCAGTAATCCTTGTTTAGAAATACAATTGTCAGCTGACATATTTCTAATTTGTCACTACAAGAAACTAATTACTGTGTGAATTATATATAGACATATTGGTTATTGTGTGGATGATAGGCAGATCTTGCCAGTCCACCAGGTCATATGAAGCTTGTTGCATCATGGCTCTCAAGAATGACAGTACCAATAACATTCTCCTACTTGATCAAAAACCCACAGGAGAAGGGTTAGACTCCTATCTATAGTATGAGTAATTAAAGCAAGTGAACAATTTGAAATCCGAGTTATATTTTGTGCAAGAGGTCTTTGCTAGTTGTTGATTTTGAAAGAGAAAAAGATCTTCAGTTTCTGTAAATCACAGAAGGTTGAACGAGACTCTTTCTAAAGTATGAGTTTGAAGGAGGATCACCCTTTTTATTGTTGGAATGGAACTGGTGCCCTATCCCAGCTCAATAACGGAATTTATTTTCTACTCTGCTAAGCTGAAGTCTATGGCACAGGATAGCACTTGGACCAGCCTTTCAGATGTAGTAATATGGTTCTTGAGGTGTGTCTGTGCGCATGCCAAAATTGTGAAAGCAATAGGCTACAGGTTGCAATGAGCCAAAGGCTATTAAATCTAGTGCTGCAACTGACATTGAGTTTTTTTGATAGGGATAAAGAAAAGAAAGGCGAAACTCATATCATTCAACCAGGAAGTACTTTCTGGCTGGTACATTTAAGGCAGATTCTAGATATTGCATCACAATCATTTCTTTTTGCAGATTGAATGGAGTTTCACTTTAGAACCTATGAATTTATTGTGCAACAAGTAGGTTTTCTACTTTGGAACCTTTAGGGATCGTTTGGTTGGGAACAAGTTATCTGAGATAATTTATCCCACCATGTATATGGGATAACTTATCCCATCACTATGATATAAATGGTGGGATAACTTATCCCATCACTATGATATAAATGGTGGGATAAGTTATCTCAAAATGGCAACCATACAAGATATAAAATTTTTATCCTATCACTATTTATTTTTATCACTCTCACCAAACGACCCCTTAGAGTGCAACAATCAACCTGATCTTGTGCCACATCAGAACAAGAAATATCCGACTTTTTTATCCAATGAAACCCCGAATTGATTGGTTGGAGTTGTGATTCATAGTAACCCACTTAGAGCCCTTTTGGCTTAACTTAAAAAAAGTAGCTTTTTGAAAGTAGTTTTTAATAAGTCGAACTTTAGTAACTTTTAAGTTGAAAAATGAAAAGTAGGGGAGCTACTTTTAACTTTTAACTTTTTTAAAGTCATTTAAAACTTATATTAAGTTATTTTTAACTTTGCCAAACATATCAAAAAGCTAAATATGACTTAAAAGTAGTGACCAACTTTTAAGCCAATCCAAACAGGCTGTAAATTTTGTTAGAAAGATGGGAAATTAACCTGAATCAAAGGCTTTCCAACAAAAAGCTCACTTGTAATAAACTTGAAGTCAATATCTAATACACTATGTAATCGATTCATATATTTGACGATGGAAGGAGAAAGAGAGGATGGACAGATGACCAAACAATAGCAGAATTTCACTTGATCATCCTTTCAGTTGAAAACATTATTGATTCCCTTTTTTTGGCACCTTGCGATGAATAGTTGGAAAATTACTGTTTGTAAACATATGATTGCCTTAAACGACGATTTCGTAATTGATTAAACAAATGGTAGACGCAGGAGGCTAGTGAATTGCTTATGAAAATATGTTAGTAGTCTTGATACTAACAAATGTGAGACTGGTGTTGGGGTTGTCAGCCGAAAGCTTTGCAAGCATAGATTCTTCAAGGATCTAGACTGCTGTTTAGCTATGCTGGGGTCTTCAAAAGACAAGTGTTGCACTGATCCTTGCCTTTAGTAATCTTAGTTAATCCGCTGCAACTGAGGGGAACTATTAAACACAATAGGGTTATACTGTACTATTAACTTGCTGTATCTTAAGTGATGTGAGTCTTGCTCTTGATTTTTGATGACACTTACGATATAGTTTGCTGCTAGTTTCACTCCTAAAAACTTCTTTTCTATTTGTTCTTTCTCCGTCCTTGTTTAGGATTGAAATTCACGGAAGCTGATTATTTATTTGAGCGACATGCATTTAGACGTTTTCAATAACAAAATGATTCATTTACATGCTGAGAAGGAAACACAATTCTAAACTGAAAAAGAAGGCTCATCACCATACATTCTGTTATATTGCTGTTGTTAATAAATAAGTTTTGGTTGCAATGTCTGTAAGAATATATGAACCAAGTTCAAAGTTAATATCAGTGCGACTTATATGATATCTGTTTGTCTTCTGTTATTACATGCACTTTCTTCTTTGAGAATTAGTTTAGGCTGATGTGTAATTATGTTGTGGCAGCTCCCGTCCATCAGATGCAGCAATATTATAGACTTGGTGCCCTTGATAATTGTAGTAAGAAATGGAGTGGTCTCGTTGATTGTCTGACTTTAAAAACCAAAAGGTCTTCTGAAGTGGAGGTACAGTGTTCTCTTGCATCATTGTCTGGACTGTTCACAATGTTCTTTTTTCGCCTGAGTCATTCAACGCAAGGTTTATTCAATTGCTAGAATGTCGAAACAATAAAATTATTTGTGAGGATGAGGAATATAATTTTATTGTTTCGACATTCTAGCAATTGAATCTGAGTCTCTCCAAATTATAACTCTTTGATTAGAATAATTGTTGCTATAATATCAGAAAAGGAGGTATACTAACACAAAACTTCTCAACTGGGGGAGGTCTTGGATGCAAGTTTTGCTGATGTGCAGCTTTGCTTTTTTGCTTTTTATGTTGTCGAAAACACTTCTAATTTGTTGATAGTCCCATTTAACTGCTCAAATCCTGGGGATTGAAGTAAAGGAGGTATTTTAAATGAGATTAAACTAGAGGGTACATTTTAGGTATTTCACAAACTAGGAGAAGATTCATTTAATTTTGCCAAACCCGAGGTAATGCCTCACCTAGTCACCCCTCACCTACAATTGGTGTGCCTCAACCCATCCAAATTTTTGAGTATGGCTGATAAATTGGTTGTGATTTCATTTGTCAACCACAGTCTTGTGTTGCTGACTTAGGCAGTAATGCTATGGTATTTGCTTTTAATGAGGTTGCTGAGCTAGCAATTTCTCTTTTCGGATGGATGCTTCTCTGAAGATGTTATTATAGATGCAGAGGGTTTTTTTAAAAATCAATAAATACAAAATTTATCATGTGGGAATTTTGTTAGAGCTTTAAGTTGTATACACCGTCAGTGCATGCAATTTTTTACACATTAGGTCATTTAATGGATATTTATAGGTAAGCCTCCTTTAGTTGTGGGACTTGAAATTTTAATAATGAGATATATTACCTGAATACCTGCTATAACAAGTAAAGATGATCTGGTAACAAGTAAAGATGATCTGATAGTGTAAAAAATACTCACACTGACGGTGTTCTTCCCTATATATGCTCGTGAAGTCACTTCTGCTTTCTGTATTATTTTGTTGATTTTGTTTATCATACTCATCATTAGATCATGTGAAGCAGGAAATTTTAGAAACACGCGAGAAAGCGAA</genome_strand>
        <mrna_strand>TCTCACGCCCACCCAACCCCGATCCACCCCTGATCGGCGCCCATCCCACCCATTCCGACCGGCGCTGCATAGATCAGCAGCAGCAGGAGGTCGCGCCACCTTCCCCGACCGGAGCTCCGTGCGCCTCGATCAGCAGCAGCAGCAGCAGGAGGAGGAGGTCGCAGCATCACCGCAGAGGCGGCAGCAGCAACAGCAAATTCCGGCAGATTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTAGCTTCAGCCGGAAATTGATCTTCAATGTCAGGAGAAGTTCAGATGAGTTCAGAAAAGCAACCACGAAGAGGACTGTCATGCACCCGTTAC-TCGATGCACTCTGGTTCTGCTACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCGTCCATCAGATGCAGCAATATTATAGACTTGGTGCCCTTGATAATTGTAGTAAGAAATGGAGTGGTCTCGTTGATTGTCTGACTTTAAAAACCAAAAGGTCTTCTGAAGTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATTTAGAAACACGCGAGAAAGCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539773" ref_strand="+" ref_description="SGN-E539773 [TUS-59-L7]">
      <seq>gttccttccctccaacctgacaaccaacaaatacccgaatctcttatgtaacacttttttcaacaattgattgatcatttgctcagtcaaaatcaatataaatcctttccattatcttccccattaaaccctaaccctatactccgattgttctctgaacgggaaaaagatcaacccaagtttatgaattaagcactacgaagttcgagaacccgatctttcttcaatttgatcgatcgggttatagttttttttttttgtttacaaagatgtcgaaattgtatggaggggatttcaatcagaaaatagattatgtgttcaaggcggtgctgatcggagattctgcagttggaaaatcgcagttattggcaagattttcgaggaatgagtttagtcttgattcaaaggcgaccatcggtgttgagttccagacgaggacgttagaaatcgataataagactattaaggctcagatttgggatactgctggtcaggagagatatagggcagtgacaagtgcgtactaccgaggtgctgttggagcaatgctagtctatgacattaccaaacgtcaatcttttgatcatatcgccaggtggttggaggaactgcggggccatgctgataaaacattgtcatcatgcttgtaggcaacaagactgacttgggtagtcttcgtgctgtacctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="22128" stop="26898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22428" g_stop="22926" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22927" i_stop="26406" i_length="3480">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26407" g_stop="26598" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="690" r_length="191" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E539773" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22428" e_stop="22926"/>
          <exon e_start="26407" e_stop="26598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCTTCCCTCCAACCTGACAACCAACAAATACCCGAATCTCTTATGTAACACTTTTTTCAACAATTGATTGATCATTTGCTCAGTCAAAATCAATATAAATCCTTTCCATTATCTTCCCCATTAAACCCTAACCCTATACTCCGATTGTTCTCTGAACGGGAAAAAGATCAACCCAAGTTTATGAATTAAGCACTACGAAGTTCGAGAACCCGATCTTTCTTCAATTTGATCGATCGGGTTATAGTTTTTTTTTTTTGTTTACAAAGATGTCGAAATTGTATGGAGGGGATTTCAATCAGAAAATAGATTATGTGTTCAAGGCGGTGCTGATCGGAGATTCTGCAGTTGGAAAATCGCAGTTATTGGCAAGATTTTCGAGGAATGAGTTTAGTCTTGATTCAAAGGCGACCATCGGTGTTGAGTTCCAGACGAGGACGTTAGAAATCGATAATAAGACTATTAAGGCTCAGATTTGGGATACTGCTGGTCAGGAGAGGTAGTTTGAACTTCTTCTTCTTTAGCCCTTTCTCTGACTTTTTTTTTTTGTTTTTCGAGATTTATTTATAGTGATCATGATCCAGTGATATGTGTAAGATCTGTTGATATCTCATGGTGATTGTGATTTGGTCCAAGTTGTGGAGTTCGCTTGGTGTATTATGTGTTTGGTAAATATGGCGATGCAGTTTTTTGGCTGATATGTGCTTTTGATCATATGGATATCTGATTTGCTATACAATATCTAACATGCTTTAGTAAGAGATTTTTAAAGGTGATCACTTATTATCACTATGAGAAAGAGAGTATTTCTATATGTGATGGATCTTAATTGCGTTTTGTGGATCTGATCACAACTTATTCAATAGTCTCTTACTGGGCGTTGTTGTTGACCAACCAAATGGTGATCACAACTTACTCAATAGTTTATAGGATTGAGGTTGGTAGGTGGTAGCTGCCATTAACAGTAGTATGTAATAGTTTTCCGTGTTTCTTAAGACTGCCCTTATATGTATTAATTGTAAACAATGGAGTTGGATTACCTTTTAGCATTCATCATATTTGAAATGTGAGTGAATGAATGTTTCATCACCTTTGTTCCTCAGAAGTGGTAATGTATGCCCTTTTTGAAAAAAAAAAGCTGAAAATTTTGAAATGTTAGGACTTAATTGTAGAGTTTATACAATTCGACTAGATGAGCCTTAACCTCAAGATCTTTAGTTTGAATAAGCACAAGTTGTCTAGGGAGTCACTGTATGAAATGCAAAAGGGCCAGGTAATTTGGAGATTTAAAGAAGTAGGGTGAGTATGGGCATCTTAAATTAGTAGAGAGTCAAGAAATCTAAATGGAGACTTTTGTTTTGCCTGCCTCAAGCCTTGGGGATTGGGATACCCGATTTTGTCCCATTTGCGTCTCTTATACATTGGGCAATAAAGTGCACCTTAGGCAAGCCTTTGACGACAATGTTTTCTAGTTAACATTAACCTGCAAGCAAAATGTGACTAGGTAAACAAAATTCATTTCTTTGATGAATCTGTCATGTGGGCTTTTGGGTACTTGGACGGTGATAGATTAGGTCTCTCAACAAGCAACATCCTTTTAGATTGTAAAGGATTGCGCCTGAAAACTTATCTAATGGTTGGCCTCATATTCACCTATTGATTGTTTATCTTTTTCTTACTCATGTTTCATCACCCATAGTCTGAATTACCTTCCAAGTTCCTTTTTCTTTTGATAAAGTAAGCATTTTTCCTATAGTAAGTAAATAATTTCATTGAATAAACTGCACCAAACTGGTGCTTCTTTATACAGCTAATACACACAATGCCTTTAAATTTGTCAAATGTAGGGTACATGAGAGAATCTAGTAAATTTTTCATGTTATGCACATTTCTCAATTTACATCATAATGCCTAAAAGTGCCAAAGGTTCCATTTCCCTGCTCTTTTCATCCTCCTTTTCCTGTTGAATACCCGACTTAGTAATGAATCTCTAACAATTGTTGGCGTTACTTATTCAATACTAAAAAAATTTCAAATTGTGCTACACAACAGTGCACAACCTGAAAGTGAAGTAATAAGTGATTCACATTGTTCCACAGCTTCTTTTCTATTTTGATAACCGAGAGATCTCAAGGGTCAGTGGCACACGGTTCGAACCTCGGTGGCAGACTTTCCGACCTCTTACTGATGAAAACACCAAACAGGACATCAAAATATGCAAATTTTACTTTACATTTGACATTGTTTAAAAGGAAAAATGATTTTTATTATTTATTACTCGAGACTTTTATTAAGTTTCAAGTGAATTAAATGTTTTGCCTTTTGTATGAGATTTTGGTGAAATTTCTTGAAAGAAATGAGTTTGAAGAGGTAATGGGAAAAAACCAAGGTGAAGAAGGAAAAAGGGACAACATTCTGTTGATTTCCTTTTTGAATCAATAGGGGGGGAGGTTTGGTAAATAAAATACACCGATGAGGATATTTTTGTCTCGAAAAAATAGTTTTCTGCTTCTTGGAAGAAGCTACAATTTATAGCTTCTTCCCAAACTGTTTCTGCTACTGCCCAAAATCATTTTTTCTGTTTTGGCCAACACCTCAATTCTCCTAAAAGAAAAAAGGTTATTTTTTAGCTTCCCAAAAGTAGAAATAGGCTATGTATTTTATTTTTCTTTAGACTTGTTCATTTTGTATTTTGTAAAGTTCTTACCATTTCCTTTGCTTATTCTTTTCTGCGTTTTCTGCCCTGGTTTTTGTTTAGACTTTAGAAATTTCTTTAAAAGATAGCTGTTAGTGGATTTTTTTCCCAACCACAGAATGGGCAGGTGCTTGAGCTACCAAAAACTTTTCACAAACTCCCAGGGAACTCCTTTCCCTGATTTTTATAAGCTTACATTTGGAAGTCTGGTTCATGTATCTAAAAAGAAACCACTATAAGTCAGGTAGGTGGACTGTAGCCAAATAGAATCCATTGCCGGCGATGAATGATTACTCTGTATTAAATAAATAACTCAGACTTAGTTCTGCCTTGATTATGGAGAGAATGGTAGTTGCTTCTTTTATTTCCTTGTTTGATTTCAGGAGTGTTGGACTGCGGATATAATTATCAGTACTCTATGTCACCTCGAAGGTAGAATGTATTGTGCATCATTTTATGTGCCTTGGGGAGGGACTGTGAATACATGGCATCTGTTGTAGACTGTCTAACAACAACTATTCTTTTGTTTTTTTGGATTAGTAAAGCCAATGAAATATTATCATGAGCAATTATGAGGAAGTTATCATCTCCACGAGACTAATTACATGCAATGAACACCATAATGCTTAAGAAGTTTAGTCTTGTGTGAAGGTTTATATTTACATGTGGGAAATGAGTACCCTCCCAAGAAATAAAAGAAAGTAAATCGAATTTAAATATGCAGATGAAGATACAAAAGTTCAATGTAATTTCAATCTAATTTGAATCATGAAAACAGAGAGCTGAACTGAATGTTTTTAATAGTTGTTGTTGCTGCACTTATTTAATCTGAATTATGACATTCCTTGTTGCGTTTTTTTCCTTTTCTGGTATATGGCCCCTCTCACGAAGGTAGAAAGAGTTGCAAAAGAAAGAACAGTGTTTTCCTCTAAAAGATAGTTGAAAAGTTTGACCTAGTCCTAATTATTGATCCAGTGTGGAACACCCTAAGCTGGTCTACTCATATTAGCTTAAGTAATTTCATTAGCCTAAATCAGATGGAGAATCAAATAAATGTGCTTTATCATGCATAATTATGCTTGTCTATTATCATGCAGATATATTGTTCTAAATGTGCCAAACCATTCTGGATGTCTTAGTTGTTTTGGTTAAATACGGCTATATGTGGCATTACCATCATCATATGTGATTATACTTGTGCTTGCTCAAAAAATGTCTCTTTCGTTCCTGTGATGCTCCCTGTGGCCTTTTGGGACTAAAAACTTGTATATGGTGTGGCTCCAGATATAGGGCAGTGACAAGTGCGTACTACCGAGGTGCTGTTGGAGCAATGCTAGTCTATGACATTACCAAACGTCAATCTTTTGATCATATCGCCAGGTGGTTGGAGGAACTGCGGGGCCATGCTGATAAAAACATTGTCATCATGCTTGTAGGCAACAAGACTGACTTGGGTAGTCTTCGTGCTGTACCTAC</genome_strand>
        <mrna_strand>GTTCCTTCCCTCCAACCTGACAACCAACAAATACCCGAATCTCTTATGTAACACTTTTTTCAACAATTGATTGATCATTTGCTCAGTCAAAATCAATATAAATCCTTTCCATTATCTTCCCCATTAAACCCTAACCCTATACTCCGATTGTTCTCTGAACGGGAAAAAGATCAACCCAAGTTTATGAATTAAGCACTACGAAGTTCGAGAACCCGATCTTTCTTCAATTTGATCGATCGGGTTATAGTTTTTTTTTTTTGTTTACAAAGATGTCGAAATTGTATGGAGGGGATTTCAATCAGAAAATAGATTATGTGTTCAAGGCGGTGCTGATCGGAGATTCTGCAGTTGGAAAATCGCAGTTATTGGCAAGATTTTCGAGGAATGAGTTTAGTCTTGATTCAAAGGCGACCATCGGTGTTGAGTTCCAGACGAGGACGTTAGAAATCGATAATAAGACTATTAAGGCTCAGATTTGGGATACTGCTGGTCAGGAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAGGGCAGTGACAAGTGCGTACTACCGAGGTGCTGTTGGAGCAATGCTAGTCTATGACATTACCAAACGTCAATCTTTTGATCATATCGCCAGGTGGTTGGAGGAACTGCGGGGCCATGCTGAT-AAAACATTGTCATCATGCTTGTAGGCAACAAGACTGACTTGGGTAGTCTTCGTGCTGTACCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284756" ref_strand="+" ref_description="SGN-E284756 [cLES-3-G10]">
      <seq>ttccttccctccaacctgacaaccaacaaatacccgaatctcttatgtaacacttttttcaacaattgattgatcatttgctcagtcaaaatcaatataaatcctttccattatcttccccattaaaccctaaccctatactccgattgttctctgaacgggaaaaagatcaacccaagtttatgaattaagcactacgaagttcgagaacccgatctttcttcaatttgatcgatcgggttatagttttttttttttgtttacaaagatgtcgaaattgtatggaggggatttcaatcagaaaatagattatgtgttcaaggcggtgctgatcggagattctgcagttggaaaatcgcagttattggcaagattttcgaggaatgagtttagtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="22129" stop="23126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22429" g_stop="22826" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E284756" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22429" e_stop="22826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCCCTCCAACCTGACAACCAACAAATACCCGAATCTCTTATGTAACACTTTTTTCAACAATTGATTGATCATTTGCTCAGTCAAAATCAATATAAATCCTTTCCATTATCTTCCCCATTAAACCCTAACCCTATACTCCGATTGTTCTCTGAACGGGAAAAAGATCAACCCAAGTTTATGAATTAAGCACTACGAAGTTCGAGAACCCGATCTTTCTTCAATTTGATCGATCGGGTTATAGTTTTTTTTTTTTGTTTACAAAGATGTCGAAATTGTATGGAGGGGATTTCAATCAGAAAATAGATTATGTGTTCAAGGCGGTGCTGATCGGAGATTCTGCAGTTGGAAAATCGCAGTTATTGGCAAGATTTTCGAGGAATGAGTTTAGTCTTG</genome_strand>
        <mrna_strand>TTCCTTCCCTCCAACCTGACAACCAACAAATACCCGAATCTCTTATGTAACACTTTTTTCAACAATTGATTGATCATTTGCTCAGTCAAAATCAATATAAATCCTTTCCATTATCTTCCCCATTAAACCCTAACCCTATACTCCGATTGTTCTCTGAACGGGAAAAAGATCAACCCAAGTTTATGAATTAAGCACTACGAAGTTCGAGAACCCGATCTTTCTTCAATTTGATCGATCGGGTTATAGTTTTTTTTTTTTGTTTACAAAGATGTCGAAATTGTATGGAGGGGATTTCAATCAGAAAATAGATTATGTGTTCAAGGCGGTGCTGATCGGAGATTCTGCAGTTGGAAAATCGCAGTTATTGGCAAGATTTTCGAGGAATGAGTTTAGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267810" ref_strand="+" ref_description="SGN-E267810 [cLEI-12-C5]">
      <seq>aaatcaatataaatcctttccattatcttccccattaaaccctaaccctatactccgattgttctctgaacgggaaaaagatcaacccaagtttatgaattaagcactacgaagttcgagaacccgatctttcttcaatttgatcgatcgggttatagttttttttttttgttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="22217" stop="22991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22517" g_stop="22691" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E267810" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>175</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22517" e_stop="22691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCAATATAAATCCTTTCCATTATCTTCCCCATTAAACCCTAACCCTATACTCCGATTGTTCTCTGAACGGGAAAAAGATCAACCCAAGTTTATGAATTAAGCACTACGAAGTTCGAGAACCCGATCTTTCTTCAATTTGATCGATCGGGTTATAGTTTTTTTTTTTTGTTTA</genome_strand>
        <mrna_strand>AAATCAATATAAATCCTTTCCATTATCTTCCCCATTAAACCCTAACCCTATACTCCGATTGTTCTCTGAACGGGAAAAAGATCAACCCAAGTTTATGAATTAAGCACTACGAAGTTCGAGAACCCGATCTTTCTTCAATTTGATCGATCGGGTTATAGTTTTTTTTTTTTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467039" ref_strand="+" ref_description="SGN-E467039 [cPRO-26-J16]">
      <seq>ctcagtcaaaatcaatataaaccctttccattatcttccccatttccccattaaaccctaaccctctactccgattgttctctgaaggggaaaaagatcaacccaagtttatgaattaagcactacgaagttcaagaacccgatctttcttcaatttgatcgatcgggttatagtttttgtttagaaagatgtcaaaattgtatggaggagatttcaatcagaaaatagattatgtgttcaaggcggtgctgatcggagattctgcagttggaaaatcgcagttattggcacggttttcgaggaatgagtttagtctggattcaaaggcaaccatcggtgttgagttccagacgaggacgttagaaatcgatcataagactattaaggctcagatttgggatactgctggtcaggagagatatagggcagtgacaagtgcgtactaccgaggtgctgttggagcaatgctggtctatgacatcaccaaacgtcaatcttttgatcatatcgccaggtggttggaggaactacngggccatgctgataagaacatgtcatcatgcttgtaggcaacaagaccgacttgggtagtcttcgtgctgtacctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="22209" stop="26899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22544" g_stop="22926" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="419" r_length="376" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22927" i_stop="26406" i_length="3480">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26407" g_stop="26599" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="611" r_length="192" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E467039" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22544" e_stop="22926"/>
          <exon e_start="26407" e_stop="26599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCCATTAAACCCTAACCCTATACTCCGATTGTTCTCTGAACGGGAAAAAGATCAACCCAAGTTTATGAATTAAGCACTACGAAGTTCGAGAACCCGATCTTTCTTCAATTTGATCGATCGGGTTATAGTTTTTTTTTTTTGTTTACAAAGATGTCGAAATTGTATGGAGGGGATTTCAATCAGAAAATAGATTATGTGTTCAAGGCGGTGCTGATCGGAGATTCTGCAGTTGGAAAATCGCAGTTATTGGCAAGATTTTCGAGGAATGAGTTTAGTCTTGATTCAAAGGCGACCATCGGTGTTGAGTTCCAGACGAGGACGTTAGAAATCGATAATAAGACTATTAAGGCTCAGATTTGGGATACTGCTGGTCAGGAGAGGTAGTTTGAACTTCTTCTTCTTTAGCCCTTTCTCTGACTTTTTTTTTTTGTTTTTCGAGATTTATTTATAGTGATCATGATCCAGTGATATGTGTAAGATCTGTTGATATCTCATGGTGATTGTGATTTGGTCCAAGTTGTGGAGTTCGCTTGGTGTATTATGTGTTTGGTAAATATGGCGATGCAGTTTTTTGGCTGATATGTGCTTTTGATCATATGGATATCTGATTTGCTATACAATATCTAACATGCTTTAGTAAGAGATTTTTAAAGGTGATCACTTATTATCACTATGAGAAAGAGAGTATTTCTATATGTGATGGATCTTAATTGCGTTTTGTGGATCTGATCACAACTTATTCAATAGTCTCTTACTGGGCGTTGTTGTTGACCAACCAAATGGTGATCACAACTTACTCAATAGTTTATAGGATTGAGGTTGGTAGGTGGTAGCTGCCATTAACAGTAGTATGTAATAGTTTTCCGTGTTTCTTAAGACTGCCCTTATATGTATTAATTGTAAACAATGGAGTTGGATTACCTTTTAGCATTCATCATATTTGAAATGTGAGTGAATGAATGTTTCATCACCTTTGTTCCTCAGAAGTGGTAATGTATGCCCTTTTTGAAAAAAAAAAGCTGAAAATTTTGAAATGTTAGGACTTAATTGTAGAGTTTATACAATTCGACTAGATGAGCCTTAACCTCAAGATCTTTAGTTTGAATAAGCACAAGTTGTCTAGGGAGTCACTGTATGAAATGCAAAAGGGCCAGGTAATTTGGAGATTTAAAGAAGTAGGGTGAGTATGGGCATCTTAAATTAGTAGAGAGTCAAGAAATCTAAATGGAGACTTTTGTTTTGCCTGCCTCAAGCCTTGGGGATTGGGATACCCGATTTTGTCCCATTTGCGTCTCTTATACATTGGGCAATAAAGTGCACCTTAGGCAAGCCTTTGACGACAATGTTTTCTAGTTAACATTAACCTGCAAGCAAAATGTGACTAGGTAAACAAAATTCATTTCTTTGATGAATCTGTCATGTGGGCTTTTGGGTACTTGGACGGTGATAGATTAGGTCTCTCAACAAGCAACATCCTTTTAGATTGTAAAGGATTGCGCCTGAAAACTTATCTAATGGTTGGCCTCATATTCACCTATTGATTGTTTATCTTTTTCTTACTCATGTTTCATCACCCATAGTCTGAATTACCTTCCAAGTTCCTTTTTCTTTTGATAAAGTAAGCATTTTTCCTATAGTAAGTAAATAATTTCATTGAATAAACTGCACCAAACTGGTGCTTCTTTATACAGCTAATACACACAATGCCTTTAAATTTGTCAAATGTAGGGTACATGAGAGAATCTAGTAAATTTTTCATGTTATGCACATTTCTCAATTTACATCATAATGCCTAAAAGTGCCAAAGGTTCCATTTCCCTGCTCTTTTCATCCTCCTTTTCCTGTTGAATACCCGACTTAGTAATGAATCTCTAACAATTGTTGGCGTTACTTATTCAATACTAAAAAAATTTCAAATTGTGCTACACAACAGTGCACAACCTGAAAGTGAAGTAATAAGTGATTCACATTGTTCCACAGCTTCTTTTCTATTTTGATAACCGAGAGATCTCAAGGGTCAGTGGCACACGGTTCGAACCTCGGTGGCAGACTTTCCGACCTCTTACTGATGAAAACACCAAACAGGACATCAAAATATGCAAATTTTACTTTACATTTGACATTGTTTAAAAGGAAAAATGATTTTTATTATTTATTACTCGAGACTTTTATTAAGTTTCAAGTGAATTAAATGTTTTGCCTTTTGTATGAGATTTTGGTGAAATTTCTTGAAAGAAATGAGTTTGAAGAGGTAATGGGAAAAAACCAAGGTGAAGAAGGAAAAAGGGACAACATTCTGTTGATTTCCTTTTTGAATCAATAGGGGGGGAGGTTTGGTAAATAAAATACACCGATGAGGATATTTTTGTCTCGAAAAAATAGTTTTCTGCTTCTTGGAAGAAGCTACAATTTATAGCTTCTTCCCAAACTGTTTCTGCTACTGCCCAAAATCATTTTTTCTGTTTTGGCCAACACCTCAATTCTCCTAAAAGAAAAAAGGTTATTTTTTAGCTTCCCAAAAGTAGAAATAGGCTATGTATTTTATTTTTCTTTAGACTTGTTCATTTTGTATTTTGTAAAGTTCTTACCATTTCCTTTGCTTATTCTTTTCTGCGTTTTCTGCCCTGGTTTTTGTTTAGACTTTAGAAATTTCTTTAAAAGATAGCTGTTAGTGGATTTTTTTCCCAACCACAGAATGGGCAGGTGCTTGAGCTACCAAAAACTTTTCACAAACTCCCAGGGAACTCCTTTCCCTGATTTTTATAAGCTTACATTTGGAAGTCTGGTTCATGTATCTAAAAAGAAACCACTATAAGTCAGGTAGGTGGACTGTAGCCAAATAGAATCCATTGCCGGCGATGAATGATTACTCTGTATTAAATAAATAACTCAGACTTAGTTCTGCCTTGATTATGGAGAGAATGGTAGTTGCTTCTTTTATTTCCTTGTTTGATTTCAGGAGTGTTGGACTGCGGATATAATTATCAGTACTCTATGTCACCTCGAAGGTAGAATGTATTGTGCATCATTTTATGTGCCTTGGGGAGGGACTGTGAATACATGGCATCTGTTGTAGACTGTCTAACAACAACTATTCTTTTGTTTTTTTGGATTAGTAAAGCCAATGAAATATTATCATGAGCAATTATGAGGAAGTTATCATCTCCACGAGACTAATTACATGCAATGAACACCATAATGCTTAAGAAGTTTAGTCTTGTGTGAAGGTTTATATTTACATGTGGGAAATGAGTACCCTCCCAAGAAATAAAAGAAAGTAAATCGAATTTAAATATGCAGATGAAGATACAAAAGTTCAATGTAATTTCAATCTAATTTGAATCATGAAAACAGAGAGCTGAACTGAATGTTTTTAATAGTTGTTGTTGCTGCACTTATTTAATCTGAATTATGACATTCCTTGTTGCGTTTTTTTCCTTTTCTGGTATATGGCCCCTCTCACGAAGGTAGAAAGAGTTGCAAAAGAAAGAACAGTGTTTTCCTCTAAAAGATAGTTGAAAAGTTTGACCTAGTCCTAATTATTGATCCAGTGTGGAACACCCTAAGCTGGTCTACTCATATTAGCTTAAGTAATTTCATTAGCCTAAATCAGATGGAGAATCAAATAAATGTGCTTTATCATGCATAATTATGCTTGTCTATTATCATGCAGATATATTGTTCTAAATGTGCCAAACCATTCTGGATGTCTTAGTTGTTTTGGTTAAATACGGCTATATGTGGCATTACCATCATCATATGTGATTATACTTGTGCTTGCTCAAAAAATGTCTCTTTCGTTCCTGTGATGCTCCCTGTGGCCTTTTGGGACTAAAAACTTGTATATGGTGTGGCTCCAGATATAGGGCAGTGACAAGTGCGTACTACCGAGGTGCTGTTGGAGCAATGCTAGTCTATGACATTACCAAACGTCAATCTTTTGATCATATCGCCAGGTGGTTGGAGGAACTGCGGGGCCATGCTGATAAAAACATTGTCATCATGCTTGTAGGCAACAAGACTGACTTGGGTAGTCTTCGTGCTGTACCTACT</genome_strand>
        <mrna_strand>TTCCCCATTAAACCCTAACCCTCTACTCCGATTGTTCTCTGAAGGGGAAAAAGATCAACCCAAGTTTATGAATTAAGCACTACGAAGTTCAAGAACCCGATCTTTCTTCAATTTGATCGATCGGGTTATAG-------TTTTTGTTTAGAAAGATGTCAAAATTGTATGGAGGAGATTTCAATCAGAAAATAGATTATGTGTTCAAGGCGGTGCTGATCGGAGATTCTGCAGTTGGAAAATCGCAGTTATTGGCACGGTTTTCGAGGAATGAGTTTAGTCTGGATTCAAAGGCAACCATCGGTGTTGAGTTCCAGACGAGGACGTTAGAAATCGATCATAAGACTATTAAGGCTCAGATTTGGGATACTGCTGGTCAGGAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAGGGCAGTGACAAGTGCGTACTACCGAGGTGCTGTTGGAGCAATGCTGGTCTATGACATCACCAAACGTCAATCTTTTGATCATATCGCCAGGTGGTTGGAGGAACTACNGGGCCATGCTGATAAGAACA-TGTCATCATGCTTGTAGGCAACAAGACCGACTTGGGTAGTCTTCGTGCTGTACCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452306" ref_strand="+" ref_description="SGN-E452306 [cSTS-16-I12]">
      <seq>ctccgattgttctctgaagaggaaacagatcaacccaagtttatgaattaagcactacgaaattcaagaacccgatctttcttcaatttgatcgatcgggttatagttttttgtttagaaagatgtcaaaattgtatggaggagatttcaatcagaaaatagattatgtgttcaaggcggtgctgatcggagattctgcagttggaaaatcgcagttattggcacggttttcgaggaatgagtttagtctggattcaaaggcaaccatcggtgttgagttccagacgaggacgttagaaatcgatcataagactattaaggctcagatttgggatactgctggtcaggagagatatagggcagtgacaagtgcatactaccgaggtgctgttggagcaatgctggtctatgacatcaccaaacgccaatcttttgatcatattgccaggtggttggaggaactacggggccatgctgataagaacattgtcatcatgcttgtaggcaacaagaccgacttgggtagtcttcgtgctgtacctactgaggatgcgaaagagtttgctgagaaagagaacctgttctttattgaaacatcggccctagaagcaacanatgtggatacagcttttgttaatgtcttgacggagatatatagggttgtcagcaagaaatcccttgttgccaacgaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="22269" stop="27048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22569" g_stop="22926" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22927" i_stop="26406" i_length="3480">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26407" g_stop="26748" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="694" r_length="342" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E452306" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22569" e_stop="22926"/>
          <exon e_start="26407" e_stop="26748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGATTGTTCTCTGAACGGGAAAAAGATCAACCCAAGTTTATGAATTAAGCACTACGAAGTTCGAGAACCCGATCTTTCTTCAATTTGATCGATCGGGTTATAGTTTTTTTTTTTTGTTTACAAAGATGTCGAAATTGTATGGAGGGGATTTCAATCAGAAAATAGATTATGTGTTCAAGGCGGTGCTGATCGGAGATTCTGCAGTTGGAAAATCGCAGTTATTGGCAAGATTTTCGAGGAATGAGTTTAGTCTTGATTCAAAGGCGACCATCGGTGTTGAGTTCCAGACGAGGACGTTAGAAATCGATAATAAGACTATTAAGGCTCAGATTTGGGATACTGCTGGTCAGGAGAGGTAGTTTGAACTTCTTCTTCTTTAGCCCTTTCTCTGACTTTTTTTTTTTGTTTTTCGAGATTTATTTATAGTGATCATGATCCAGTGATATGTGTAAGATCTGTTGATATCTCATGGTGATTGTGATTTGGTCCAAGTTGTGGAGTTCGCTTGGTGTATTATGTGTTTGGTAAATATGGCGATGCAGTTTTTTGGCTGATATGTGCTTTTGATCATATGGATATCTGATTTGCTATACAATATCTAACATGCTTTAGTAAGAGATTTTTAAAGGTGATCACTTATTATCACTATGAGAAAGAGAGTATTTCTATATGTGATGGATCTTAATTGCGTTTTGTGGATCTGATCACAACTTATTCAATAGTCTCTTACTGGGCGTTGTTGTTGACCAACCAAATGGTGATCACAACTTACTCAATAGTTTATAGGATTGAGGTTGGTAGGTGGTAGCTGCCATTAACAGTAGTATGTAATAGTTTTCCGTGTTTCTTAAGACTGCCCTTATATGTATTAATTGTAAACAATGGAGTTGGATTACCTTTTAGCATTCATCATATTTGAAATGTGAGTGAATGAATGTTTCATCACCTTTGTTCCTCAGAAGTGGTAATGTATGCCCTTTTTGAAAAAAAAAAGCTGAAAATTTTGAAATGTTAGGACTTAATTGTAGAGTTTATACAATTCGACTAGATGAGCCTTAACCTCAAGATCTTTAGTTTGAATAAGCACAAGTTGTCTAGGGAGTCACTGTATGAAATGCAAAAGGGCCAGGTAATTTGGAGATTTAAAGAAGTAGGGTGAGTATGGGCATCTTAAATTAGTAGAGAGTCAAGAAATCTAAATGGAGACTTTTGTTTTGCCTGCCTCAAGCCTTGGGGATTGGGATACCCGATTTTGTCCCATTTGCGTCTCTTATACATTGGGCAATAAAGTGCACCTTAGGCAAGCCTTTGACGACAATGTTTTCTAGTTAACATTAACCTGCAAGCAAAATGTGACTAGGTAAACAAAATTCATTTCTTTGATGAATCTGTCATGTGGGCTTTTGGGTACTTGGACGGTGATAGATTAGGTCTCTCAACAAGCAACATCCTTTTAGATTGTAAAGGATTGCGCCTGAAAACTTATCTAATGGTTGGCCTCATATTCACCTATTGATTGTTTATCTTTTTCTTACTCATGTTTCATCACCCATAGTCTGAATTACCTTCCAAGTTCCTTTTTCTTTTGATAAAGTAAGCATTTTTCCTATAGTAAGTAAATAATTTCATTGAATAAACTGCACCAAACTGGTGCTTCTTTATACAGCTAATACACACAATGCCTTTAAATTTGTCAAATGTAGGGTACATGAGAGAATCTAGTAAATTTTTCATGTTATGCACATTTCTCAATTTACATCATAATGCCTAAAAGTGCCAAAGGTTCCATTTCCCTGCTCTTTTCATCCTCCTTTTCCTGTTGAATACCCGACTTAGTAATGAATCTCTAACAATTGTTGGCGTTACTTATTCAATACTAAAAAAATTTCAAATTGTGCTACACAACAGTGCACAACCTGAAAGTGAAGTAATAAGTGATTCACATTGTTCCACAGCTTCTTTTCTATTTTGATAACCGAGAGATCTCAAGGGTCAGTGGCACACGGTTCGAACCTCGGTGGCAGACTTTCCGACCTCTTACTGATGAAAACACCAAACAGGACATCAAAATATGCAAATTTTACTTTACATTTGACATTGTTTAAAAGGAAAAATGATTTTTATTATTTATTACTCGAGACTTTTATTAAGTTTCAAGTGAATTAAATGTTTTGCCTTTTGTATGAGATTTTGGTGAAATTTCTTGAAAGAAATGAGTTTGAAGAGGTAATGGGAAAAAACCAAGGTGAAGAAGGAAAAAGGGACAACATTCTGTTGATTTCCTTTTTGAATCAATAGGGGGGGAGGTTTGGTAAATAAAATACACCGATGAGGATATTTTTGTCTCGAAAAAATAGTTTTCTGCTTCTTGGAAGAAGCTACAATTTATAGCTTCTTCCCAAACTGTTTCTGCTACTGCCCAAAATCATTTTTTCTGTTTTGGCCAACACCTCAATTCTCCTAAAAGAAAAAAGGTTATTTTTTAGCTTCCCAAAAGTAGAAATAGGCTATGTATTTTATTTTTCTTTAGACTTGTTCATTTTGTATTTTGTAAAGTTCTTACCATTTCCTTTGCTTATTCTTTTCTGCGTTTTCTGCCCTGGTTTTTGTTTAGACTTTAGAAATTTCTTTAAAAGATAGCTGTTAGTGGATTTTTTTCCCAACCACAGAATGGGCAGGTGCTTGAGCTACCAAAAACTTTTCACAAACTCCCAGGGAACTCCTTTCCCTGATTTTTATAAGCTTACATTTGGAAGTCTGGTTCATGTATCTAAAAAGAAACCACTATAAGTCAGGTAGGTGGACTGTAGCCAAATAGAATCCATTGCCGGCGATGAATGATTACTCTGTATTAAATAAATAACTCAGACTTAGTTCTGCCTTGATTATGGAGAGAATGGTAGTTGCTTCTTTTATTTCCTTGTTTGATTTCAGGAGTGTTGGACTGCGGATATAATTATCAGTACTCTATGTCACCTCGAAGGTAGAATGTATTGTGCATCATTTTATGTGCCTTGGGGAGGGACTGTGAATACATGGCATCTGTTGTAGACTGTCTAACAACAACTATTCTTTTGTTTTTTTGGATTAGTAAAGCCAATGAAATATTATCATGAGCAATTATGAGGAAGTTATCATCTCCACGAGACTAATTACATGCAATGAACACCATAATGCTTAAGAAGTTTAGTCTTGTGTGAAGGTTTATATTTACATGTGGGAAATGAGTACCCTCCCAAGAAATAAAAGAAAGTAAATCGAATTTAAATATGCAGATGAAGATACAAAAGTTCAATGTAATTTCAATCTAATTTGAATCATGAAAACAGAGAGCTGAACTGAATGTTTTTAATAGTTGTTGTTGCTGCACTTATTTAATCTGAATTATGACATTCCTTGTTGCGTTTTTTTCCTTTTCTGGTATATGGCCCCTCTCACGAAGGTAGAAAGAGTTGCAAAAGAAAGAACAGTGTTTTCCTCTAAAAGATAGTTGAAAAGTTTGACCTAGTCCTAATTATTGATCCAGTGTGGAACACCCTAAGCTGGTCTACTCATATTAGCTTAAGTAATTTCATTAGCCTAAATCAGATGGAGAATCAAATAAATGTGCTTTATCATGCATAATTATGCTTGTCTATTATCATGCAGATATATTGTTCTAAATGTGCCAAACCATTCTGGATGTCTTAGTTGTTTTGGTTAAATACGGCTATATGTGGCATTACCATCATCATATGTGATTATACTTGTGCTTGCTCAAAAAATGTCTCTTTCGTTCCTGTGATGCTCCCTGTGGCCTTTTGGGACTAAAAACTTGTATATGGTGTGGCTCCAGATATAGGGCAGTGACAAGTGCGTACTACCGAGGTGCTGTTGGAGCAATGCTAGTCTATGACATTACCAAACGTCAATCTTTTGATCATATCGCCAGGTGGTTGGAGGAACTGCGGGGCCATGCTGATAAAAACATTGTCATCATGCTTGTAGGCAACAAGACTGACTTGGGTAGTCTTCGTGCTGTACCTACTGAGGATGCGAAAGAGTTTGCTGAGAAAGAGAACTTGTTCTTTATTGAAACATCGGCCCTAGAATCAACAAATGTGGATACAGCTTTTGTTAATGTCTTGACGGAGATATATAGGGTTGTCAGCAAGAAATCCCTTGTTGCCAATGAGGC</genome_strand>
        <mrna_strand>CTCCGATTGTTCTCTGAAGAGGAAACAGATCAACCCAAGTTTATGAATTAAGCACTACGAAATTCAAGAACCCGATCTTTCTTCAATTTGATCGATCGGGTTATAG------TTTTTTGTTTAGAAAGATGTCAAAATTGTATGGAGGAGATTTCAATCAGAAAATAGATTATGTGTTCAAGGCGGTGCTGATCGGAGATTCTGCAGTTGGAAAATCGCAGTTATTGGCACGGTTTTCGAGGAATGAGTTTAGTCTGGATTCAAAGGCAACCATCGGTGTTGAGTTCCAGACGAGGACGTTAGAAATCGATCATAAGACTATTAAGGCTCAGATTTGGGATACTGCTGGTCAGGAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAGGGCAGTGACAAGTGCATACTACCGAGGTGCTGTTGGAGCAATGCTGGTCTATGACATCACCAAACGCCAATCTTTTGATCATATTGCCAGGTGGTTGGAGGAACTACGGGGCCATGCTGATAAGAACATTGTCATCATGCTTGTAGGCAACAAGACCGACTTGGGTAGTCTTCGTGCTGTACCTACTGAGGATGCGAAAGAGTTTGCTGAGAAAGAGAACCTGTTCTTTATTGAAACATCGGCCCTAGAAGCAACANATGTGGATACAGCTTTTGTTAATGTCTTGACGGAGATATATAGGGTTGTCAGCAAGAAATCCCTTGTTGCCAACGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575034" ref_strand="+" ref_description="SGN-E575034 [34594]">
      <seq>cgagggtctctgaaggggaaaaagatcaaccaagtttatgaattaagcactaccgaagttcaagaacccgatctttcttcaatttgatcgatcgggttatagtttttgtttagaaagatgtcaaaattgtatggaggagatttcaatcagaaaatagattatgtgttcaaggcggtgctgatcggagattctgcagttggaaaatcgcagttattggcacggttttcgaggaatgagtttagtctggattcaaaggcaaccatcggtgttgagttccagacgaggacgttagaaatcgatcataagactattaaggctcagatttgggatactgctggtcaggagagatatagggcagtgacaagtgcgtactaccgaggtgctgttggagcaatgctggtctatgacatcaccaaacgtcaatcttttgatcatatcgccaggtggttggaggaactacggggccatgctgataagaacattgtcatcatgcttgtaggcaacaagaccgacttgggtagtcttcgtgctgtacctactgaggatgcgaaagagtttgctgagaaaggagaacctgttctttattgaaacatcgggccctagaaacaacaatgtggatacagttttgttatgtcttgacggagatatataggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="22277" stop="27016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22572" g_stop="22926" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22927" i_stop="26406" i_length="3480">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26407" g_stop="26715" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="655" r_length="308" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E575034" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22572" e_stop="22926"/>
          <exon e_start="26407" e_stop="26715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTGTTCTCTGAACGGGAAAAAGATCAACCCAAGTTTATGAATTAAGCACTA-CGAAGTTCGAGAACCCGATCTTTCTTCAATTTGATCGATCGGGTTATAGTTTTTTTTTTTTGTTTACAAAGATGTCGAAATTGTATGGAGGGGATTTCAATCAGAAAATAGATTATGTGTTCAAGGCGGTGCTGATCGGAGATTCTGCAGTTGGAAAATCGCAGTTATTGGCAAGATTTTCGAGGAATGAGTTTAGTCTTGATTCAAAGGCGACCATCGGTGTTGAGTTCCAGACGAGGACGTTAGAAATCGATAATAAGACTATTAAGGCTCAGATTTGGGATACTGCTGGTCAGGAGAGGTAGTTTGAACTTCTTCTTCTTTAGCCCTTTCTCTGACTTTTTTTTTTTGTTTTTCGAGATTTATTTATAGTGATCATGATCCAGTGATATGTGTAAGATCTGTTGATATCTCATGGTGATTGTGATTTGGTCCAAGTTGTGGAGTTCGCTTGGTGTATTATGTGTTTGGTAAATATGGCGATGCAGTTTTTTGGCTGATATGTGCTTTTGATCATATGGATATCTGATTTGCTATACAATATCTAACATGCTTTAGTAAGAGATTTTTAAAGGTGATCACTTATTATCACTATGAGAAAGAGAGTATTTCTATATGTGATGGATCTTAATTGCGTTTTGTGGATCTGATCACAACTTATTCAATAGTCTCTTACTGGGCGTTGTTGTTGACCAACCAAATGGTGATCACAACTTACTCAATAGTTTATAGGATTGAGGTTGGTAGGTGGTAGCTGCCATTAACAGTAGTATGTAATAGTTTTCCGTGTTTCTTAAGACTGCCCTTATATGTATTAATTGTAAACAATGGAGTTGGATTACCTTTTAGCATTCATCATATTTGAAATGTGAGTGAATGAATGTTTCATCACCTTTGTTCCTCAGAAGTGGTAATGTATGCCCTTTTTGAAAAAAAAAAGCTGAAAATTTTGAAATGTTAGGACTTAATTGTAGAGTTTATACAATTCGACTAGATGAGCCTTAACCTCAAGATCTTTAGTTTGAATAAGCACAAGTTGTCTAGGGAGTCACTGTATGAAATGCAAAAGGGCCAGGTAATTTGGAGATTTAAAGAAGTAGGGTGAGTATGGGCATCTTAAATTAGTAGAGAGTCAAGAAATCTAAATGGAGACTTTTGTTTTGCCTGCCTCAAGCCTTGGGGATTGGGATACCCGATTTTGTCCCATTTGCGTCTCTTATACATTGGGCAATAAAGTGCACCTTAGGCAAGCCTTTGACGACAATGTTTTCTAGTTAACATTAACCTGCAAGCAAAATGTGACTAGGTAAACAAAATTCATTTCTTTGATGAATCTGTCATGTGGGCTTTTGGGTACTTGGACGGTGATAGATTAGGTCTCTCAACAAGCAACATCCTTTTAGATTGTAAAGGATTGCGCCTGAAAACTTATCTAATGGTTGGCCTCATATTCACCTATTGATTGTTTATCTTTTTCTTACTCATGTTTCATCACCCATAGTCTGAATTACCTTCCAAGTTCCTTTTTCTTTTGATAAAGTAAGCATTTTTCCTATAGTAAGTAAATAATTTCATTGAATAAACTGCACCAAACTGGTGCTTCTTTATACAGCTAATACACACAATGCCTTTAAATTTGTCAAATGTAGGGTACATGAGAGAATCTAGTAAATTTTTCATGTTATGCACATTTCTCAATTTACATCATAATGCCTAAAAGTGCCAAAGGTTCCATTTCCCTGCTCTTTTCATCCTCCTTTTCCTGTTGAATACCCGACTTAGTAATGAATCTCTAACAATTGTTGGCGTTACTTATTCAATACTAAAAAAATTTCAAATTGTGCTACACAACAGTGCACAACCTGAAAGTGAAGTAATAAGTGATTCACATTGTTCCACAGCTTCTTTTCTATTTTGATAACCGAGAGATCTCAAGGGTCAGTGGCACACGGTTCGAACCTCGGTGGCAGACTTTCCGACCTCTTACTGATGAAAACACCAAACAGGACATCAAAATATGCAAATTTTACTTTACATTTGACATTGTTTAAAAGGAAAAATGATTTTTATTATTTATTACTCGAGACTTTTATTAAGTTTCAAGTGAATTAAATGTTTTGCCTTTTGTATGAGATTTTGGTGAAATTTCTTGAAAGAAATGAGTTTGAAGAGGTAATGGGAAAAAACCAAGGTGAAGAAGGAAAAAGGGACAACATTCTGTTGATTTCCTTTTTGAATCAATAGGGGGGGAGGTTTGGTAAATAAAATACACCGATGAGGATATTTTTGTCTCGAAAAAATAGTTTTCTGCTTCTTGGAAGAAGCTACAATTTATAGCTTCTTCCCAAACTGTTTCTGCTACTGCCCAAAATCATTTTTTCTGTTTTGGCCAACACCTCAATTCTCCTAAAAGAAAAAAGGTTATTTTTTAGCTTCCCAAAAGTAGAAATAGGCTATGTATTTTATTTTTCTTTAGACTTGTTCATTTTGTATTTTGTAAAGTTCTTACCATTTCCTTTGCTTATTCTTTTCTGCGTTTTCTGCCCTGGTTTTTGTTTAGACTTTAGAAATTTCTTTAAAAGATAGCTGTTAGTGGATTTTTTTCCCAACCACAGAATGGGCAGGTGCTTGAGCTACCAAAAACTTTTCACAAACTCCCAGGGAACTCCTTTCCCTGATTTTTATAAGCTTACATTTGGAAGTCTGGTTCATGTATCTAAAAAGAAACCACTATAAGTCAGGTAGGTGGACTGTAGCCAAATAGAATCCATTGCCGGCGATGAATGATTACTCTGTATTAAATAAATAACTCAGACTTAGTTCTGCCTTGATTATGGAGAGAATGGTAGTTGCTTCTTTTATTTCCTTGTTTGATTTCAGGAGTGTTGGACTGCGGATATAATTATCAGTACTCTATGTCACCTCGAAGGTAGAATGTATTGTGCATCATTTTATGTGCCTTGGGGAGGGACTGTGAATACATGGCATCTGTTGTAGACTGTCTAACAACAACTATTCTTTTGTTTTTTTGGATTAGTAAAGCCAATGAAATATTATCATGAGCAATTATGAGGAAGTTATCATCTCCACGAGACTAATTACATGCAATGAACACCATAATGCTTAAGAAGTTTAGTCTTGTGTGAAGGTTTATATTTACATGTGGGAAATGAGTACCCTCCCAAGAAATAAAAGAAAGTAAATCGAATTTAAATATGCAGATGAAGATACAAAAGTTCAATGTAATTTCAATCTAATTTGAATCATGAAAACAGAGAGCTGAACTGAATGTTTTTAATAGTTGTTGTTGCTGCACTTATTTAATCTGAATTATGACATTCCTTGTTGCGTTTTTTTCCTTTTCTGGTATATGGCCCCTCTCACGAAGGTAGAAAGAGTTGCAAAAGAAAGAACAGTGTTTTCCTCTAAAAGATAGTTGAAAAGTTTGACCTAGTCCTAATTATTGATCCAGTGTGGAACACCCTAAGCTGGTCTACTCATATTAGCTTAAGTAATTTCATTAGCCTAAATCAGATGGAGAATCAAATAAATGTGCTTTATCATGCATAATTATGCTTGTCTATTATCATGCAGATATATTGTTCTAAATGTGCCAAACCATTCTGGATGTCTTAGTTGTTTTGGTTAAATACGGCTATATGTGGCATTACCATCATCATATGTGATTATACTTGTGCTTGCTCAAAAAATGTCTCTTTCGTTCCTGTGATGCTCCCTGTGGCCTTTTGGGACTAAAAACTTGTATATGGTGTGGCTCCAGATATAGGGCAGTGACAAGTGCGTACTACCGAGGTGCTGTTGGAGCAATGCTAGTCTATGACATTACCAAACGTCAATCTTTTGATCATATCGCCAGGTGGTTGGAGGAACTGCGGGGCCATGCTGATAAAAACATTGTCATCATGCTTGTAGGCAACAAGACTGACTTGGGTAGTCTTCGTGCTGTACCTACTGAGGATGCGAAAGAGTTTGCTGAGAAA-GAGAACTTGTTCTTTATTGAAACATC-GGCCCTAGAATCAACAAATGTGGATACAGCTTTTGTTAATGTCTTGACGGAGATATATAGGGT</genome_strand>
        <mrna_strand>CGAGGG-TCTCTGAAGGGGAAAAAGATCAA-CCAAGTTTATGAATTAAGCACTACCGAAGTTCAAGAACCCGATCTTTCTTCAATTTGATCGATCGGGTTATAG-------TTTTTGTTTAGAAAGATGTCAAAATTGTATGGAGGAGATTTCAATCAGAAAATAGATTATGTGTTCAAGGCGGTGCTGATCGGAGATTCTGCAGTTGGAAAATCGCAGTTATTGGCACGGTTTTCGAGGAATGAGTTTAGTCTGGATTCAAAGGCAACCATCGGTGTTGAGTTCCAGACGAGGACGTTAGAAATCGATCATAAGACTATTAAGGCTCAGATTTGGGATACTGCTGGTCAGGAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAGGGCAGTGACAAGTGCGTACTACCGAGGTGCTGTTGGAGCAATGCTGGTCTATGACATCACCAAACGTCAATCTTTTGATCATATCGCCAGGTGGTTGGAGGAACTACGGGGCCATGCTGATAAGAACATTGTCATCATGCTTGTAGGCAACAAGACCGACTTGGGTAGTCTTCGTGCTGTACCTACTGAGGATGCGAAAGAGTTTGCTGAGAAAGGAGAACCTGTTCTTTATTGAAACATCGGGCCCTAGAAACAAC-AATGTGGATACAG-TTTTGTT-ATGTCTTGACGGAGATATATAGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461753" ref_strand="+" ref_description="SGN-E461753 [cPRO-9-B5]">
      <seq>gttctctgaaggggaaaaagatcaacccaagtttatgaattaagcactacgaagttcaagaacccgatctttcttcaatttgatcgatcgggttatagttttttgtttagaaagatgtcaaaattgtatggaggagatttcaatcagaaaatagattatgtgttcaaggcggtgctgatcggagattctgcagttggaaaatcgcagttattggcacggttttcgaggaacgagtttagtctggattcaaaggcaaccatcggtgttgagttccagacgaggacgttagaaatcgatcataagactattaaggctcagatttgggatactgctggtcaggagagatatagggcagtgacaagtgcatactaccgaggtgctgttggagcaatgttggtctatgacatcaccaaacgtcaatcttttgatcatatcgccaggtggttggaggaactacggggccatgctgataagaacattgtcatcatgcttgtaggcaacaagaccgacttgggtagtcttcgtgctgtacctactgaggatgcgaaagagtttgctgagaaagagaacctgttctttattgaaacatcggccctagaagcaacaaatgtggatacagcttttggtaatgtcttgacggagatatataggggtgtcagcaagaaatcccttggtgccaacgaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="22277" stop="27048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22577" g_stop="22926" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22927" i_stop="26406" i_length="3480">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26407" g_stop="26748" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="686" r_length="342" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E461753" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22577" e_stop="22926"/>
          <exon e_start="26407" e_stop="26748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCTGAACGGGAAAAAGATCAACCCAAGTTTATGAATTAAGCACTACGAAGTTCGAGAACCCGATCTTTCTTCAATTTGATCGATCGGGTTATAGTTTTTTTTTTTTGTTTACAAAGATGTCGAAATTGTATGGAGGGGATTTCAATCAGAAAATAGATTATGTGTTCAAGGCGGTGCTGATCGGAGATTCTGCAGTTGGAAAATCGCAGTTATTGGCAAGATTTTCGAGGAATGAGTTTAGTCTTGATTCAAAGGCGACCATCGGTGTTGAGTTCCAGACGAGGACGTTAGAAATCGATAATAAGACTATTAAGGCTCAGATTTGGGATACTGCTGGTCAGGAGAGGTAGTTTGAACTTCTTCTTCTTTAGCCCTTTCTCTGACTTTTTTTTTTTGTTTTTCGAGATTTATTTATAGTGATCATGATCCAGTGATATGTGTAAGATCTGTTGATATCTCATGGTGATTGTGATTTGGTCCAAGTTGTGGAGTTCGCTTGGTGTATTATGTGTTTGGTAAATATGGCGATGCAGTTTTTTGGCTGATATGTGCTTTTGATCATATGGATATCTGATTTGCTATACAATATCTAACATGCTTTAGTAAGAGATTTTTAAAGGTGATCACTTATTATCACTATGAGAAAGAGAGTATTTCTATATGTGATGGATCTTAATTGCGTTTTGTGGATCTGATCACAACTTATTCAATAGTCTCTTACTGGGCGTTGTTGTTGACCAACCAAATGGTGATCACAACTTACTCAATAGTTTATAGGATTGAGGTTGGTAGGTGGTAGCTGCCATTAACAGTAGTATGTAATAGTTTTCCGTGTTTCTTAAGACTGCCCTTATATGTATTAATTGTAAACAATGGAGTTGGATTACCTTTTAGCATTCATCATATTTGAAATGTGAGTGAATGAATGTTTCATCACCTTTGTTCCTCAGAAGTGGTAATGTATGCCCTTTTTGAAAAAAAAAAGCTGAAAATTTTGAAATGTTAGGACTTAATTGTAGAGTTTATACAATTCGACTAGATGAGCCTTAACCTCAAGATCTTTAGTTTGAATAAGCACAAGTTGTCTAGGGAGTCACTGTATGAAATGCAAAAGGGCCAGGTAATTTGGAGATTTAAAGAAGTAGGGTGAGTATGGGCATCTTAAATTAGTAGAGAGTCAAGAAATCTAAATGGAGACTTTTGTTTTGCCTGCCTCAAGCCTTGGGGATTGGGATACCCGATTTTGTCCCATTTGCGTCTCTTATACATTGGGCAATAAAGTGCACCTTAGGCAAGCCTTTGACGACAATGTTTTCTAGTTAACATTAACCTGCAAGCAAAATGTGACTAGGTAAACAAAATTCATTTCTTTGATGAATCTGTCATGTGGGCTTTTGGGTACTTGGACGGTGATAGATTAGGTCTCTCAACAAGCAACATCCTTTTAGATTGTAAAGGATTGCGCCTGAAAACTTATCTAATGGTTGGCCTCATATTCACCTATTGATTGTTTATCTTTTTCTTACTCATGTTTCATCACCCATAGTCTGAATTACCTTCCAAGTTCCTTTTTCTTTTGATAAAGTAAGCATTTTTCCTATAGTAAGTAAATAATTTCATTGAATAAACTGCACCAAACTGGTGCTTCTTTATACAGCTAATACACACAATGCCTTTAAATTTGTCAAATGTAGGGTACATGAGAGAATCTAGTAAATTTTTCATGTTATGCACATTTCTCAATTTACATCATAATGCCTAAAAGTGCCAAAGGTTCCATTTCCCTGCTCTTTTCATCCTCCTTTTCCTGTTGAATACCCGACTTAGTAATGAATCTCTAACAATTGTTGGCGTTACTTATTCAATACTAAAAAAATTTCAAATTGTGCTACACAACAGTGCACAACCTGAAAGTGAAGTAATAAGTGATTCACATTGTTCCACAGCTTCTTTTCTATTTTGATAACCGAGAGATCTCAAGGGTCAGTGGCACACGGTTCGAACCTCGGTGGCAGACTTTCCGACCTCTTACTGATGAAAACACCAAACAGGACATCAAAATATGCAAATTTTACTTTACATTTGACATTGTTTAAAAGGAAAAATGATTTTTATTATTTATTACTCGAGACTTTTATTAAGTTTCAAGTGAATTAAATGTTTTGCCTTTTGTATGAGATTTTGGTGAAATTTCTTGAAAGAAATGAGTTTGAAGAGGTAATGGGAAAAAACCAAGGTGAAGAAGGAAAAAGGGACAACATTCTGTTGATTTCCTTTTTGAATCAATAGGGGGGGAGGTTTGGTAAATAAAATACACCGATGAGGATATTTTTGTCTCGAAAAAATAGTTTTCTGCTTCTTGGAAGAAGCTACAATTTATAGCTTCTTCCCAAACTGTTTCTGCTACTGCCCAAAATCATTTTTTCTGTTTTGGCCAACACCTCAATTCTCCTAAAAGAAAAAAGGTTATTTTTTAGCTTCCCAAAAGTAGAAATAGGCTATGTATTTTATTTTTCTTTAGACTTGTTCATTTTGTATTTTGTAAAGTTCTTACCATTTCCTTTGCTTATTCTTTTCTGCGTTTTCTGCCCTGGTTTTTGTTTAGACTTTAGAAATTTCTTTAAAAGATAGCTGTTAGTGGATTTTTTTCCCAACCACAGAATGGGCAGGTGCTTGAGCTACCAAAAACTTTTCACAAACTCCCAGGGAACTCCTTTCCCTGATTTTTATAAGCTTACATTTGGAAGTCTGGTTCATGTATCTAAAAAGAAACCACTATAAGTCAGGTAGGTGGACTGTAGCCAAATAGAATCCATTGCCGGCGATGAATGATTACTCTGTATTAAATAAATAACTCAGACTTAGTTCTGCCTTGATTATGGAGAGAATGGTAGTTGCTTCTTTTATTTCCTTGTTTGATTTCAGGAGTGTTGGACTGCGGATATAATTATCAGTACTCTATGTCACCTCGAAGGTAGAATGTATTGTGCATCATTTTATGTGCCTTGGGGAGGGACTGTGAATACATGGCATCTGTTGTAGACTGTCTAACAACAACTATTCTTTTGTTTTTTTGGATTAGTAAAGCCAATGAAATATTATCATGAGCAATTATGAGGAAGTTATCATCTCCACGAGACTAATTACATGCAATGAACACCATAATGCTTAAGAAGTTTAGTCTTGTGTGAAGGTTTATATTTACATGTGGGAAATGAGTACCCTCCCAAGAAATAAAAGAAAGTAAATCGAATTTAAATATGCAGATGAAGATACAAAAGTTCAATGTAATTTCAATCTAATTTGAATCATGAAAACAGAGAGCTGAACTGAATGTTTTTAATAGTTGTTGTTGCTGCACTTATTTAATCTGAATTATGACATTCCTTGTTGCGTTTTTTTCCTTTTCTGGTATATGGCCCCTCTCACGAAGGTAGAAAGAGTTGCAAAAGAAAGAACAGTGTTTTCCTCTAAAAGATAGTTGAAAAGTTTGACCTAGTCCTAATTATTGATCCAGTGTGGAACACCCTAAGCTGGTCTACTCATATTAGCTTAAGTAATTTCATTAGCCTAAATCAGATGGAGAATCAAATAAATGTGCTTTATCATGCATAATTATGCTTGTCTATTATCATGCAGATATATTGTTCTAAATGTGCCAAACCATTCTGGATGTCTTAGTTGTTTTGGTTAAATACGGCTATATGTGGCATTACCATCATCATATGTGATTATACTTGTGCTTGCTCAAAAAATGTCTCTTTCGTTCCTGTGATGCTCCCTGTGGCCTTTTGGGACTAAAAACTTGTATATGGTGTGGCTCCAGATATAGGGCAGTGACAAGTGCGTACTACCGAGGTGCTGTTGGAGCAATGCTAGTCTATGACATTACCAAACGTCAATCTTTTGATCATATCGCCAGGTGGTTGGAGGAACTGCGGGGCCATGCTGATAAAAACATTGTCATCATGCTTGTAGGCAACAAGACTGACTTGGGTAGTCTTCGTGCTGTACCTACTGAGGATGCGAAAGAGTTTGCTGAGAAAGAGAACTTGTTCTTTATTGAAACATCGGCCCTAGAATCAACAAATGTGGATACAGCTTTTGTTAATGTCTTGACGGAGATATATAGGGTTGTCAGCAAGAAATCCCTTGTTGCCAATGAGGC</genome_strand>
        <mrna_strand>GTTCTCTGAAGGGGAAAAAGATCAACCCAAGTTTATGAATTAAGCACTACGAAGTTCAAGAACCCGATCTTTCTTCAATTTGATCGATCGGGTTATAG------TTTTTTGTTTAGAAAGATGTCAAAATTGTATGGAGGAGATTTCAATCAGAAAATAGATTATGTGTTCAAGGCGGTGCTGATCGGAGATTCTGCAGTTGGAAAATCGCAGTTATTGGCACGGTTTTCGAGGAACGAGTTTAGTCTGGATTCAAAGGCAACCATCGGTGTTGAGTTCCAGACGAGGACGTTAGAAATCGATCATAAGACTATTAAGGCTCAGATTTGGGATACTGCTGGTCAGGAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAGGGCAGTGACAAGTGCATACTACCGAGGTGCTGTTGGAGCAATGTTGGTCTATGACATCACCAAACGTCAATCTTTTGATCATATCGCCAGGTGGTTGGAGGAACTACGGGGCCATGCTGATAAGAACATTGTCATCATGCTTGTAGGCAACAAGACCGACTTGGGTAGTCTTCGTGCTGTACCTACTGAGGATGCGAAAGAGTTTGCTGAGAAAGAGAACCTGTTCTTTATTGAAACATCGGCCCTAGAAGCAACAAATGTGGATACAGCTTTTGGTAATGTCTTGACGGAGATATATAGGGGTGTCAGCAAGAAATCCCTTGGTGCCAACGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E609138" ref_strand="+" ref_description="SGN-E609138 [25139]">
      <seq>gatcaacccaagtttatgaattaagcactacgaagttcaagaacccgatctttcttcaatttgatcgatcgggttatagtttttgtttagaaagatgtcaaaattgtatggaggagatttcaatcagaaaatagattatgtgttcaaggcggtgctgatcggagattctgcagttggaaaatcgcagttattggcacggttttcgaggaatgagtttagtctggattcaaaggcaaccatcggtgttgagttccagacgaggacgttagaaatcgatcataagactattaaggctcagatttgggatactgctggtcaggagagatatagggcagtgacaagtgcgtactaccgaggtgctgttggagcaatgctggtctatgacatcaccaaacgtcaatcttttgatcatatcgccaggtggttggaggaactacggggccatgctgataagaacattgtcatcatgcttgtaggcaacaagaccgacttgggtagtcttcgtgctgtacctactgaggatgcgaaagagtttgctgagaaagagaacctgttctttattgaaacatcggncctagaagcacaaatgtggatacagcttttgttaatgtcttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="22296" stop="27000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22596" g_stop="22926" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22927" i_stop="26406" i_length="3480">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26407" g_stop="26700" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="617" r_length="293" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E609138" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E609138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22596" e_stop="22926"/>
          <exon e_start="26407" e_stop="26700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAACCCAAGTTTATGAATTAAGCACTACGAAGTTCGAGAACCCGATCTTTCTTCAATTTGATCGATCGGGTTATAGTTTTTTTTTTTTGTTTACAAAGATGTCGAAATTGTATGGAGGGGATTTCAATCAGAAAATAGATTATGTGTTCAAGGCGGTGCTGATCGGAGATTCTGCAGTTGGAAAATCGCAGTTATTGGCAAGATTTTCGAGGAATGAGTTTAGTCTTGATTCAAAGGCGACCATCGGTGTTGAGTTCCAGACGAGGACGTTAGAAATCGATAATAAGACTATTAAGGCTCAGATTTGGGATACTGCTGGTCAGGAGAGGTAGTTTGAACTTCTTCTTCTTTAGCCCTTTCTCTGACTTTTTTTTTTTGTTTTTCGAGATTTATTTATAGTGATCATGATCCAGTGATATGTGTAAGATCTGTTGATATCTCATGGTGATTGTGATTTGGTCCAAGTTGTGGAGTTCGCTTGGTGTATTATGTGTTTGGTAAATATGGCGATGCAGTTTTTTGGCTGATATGTGCTTTTGATCATATGGATATCTGATTTGCTATACAATATCTAACATGCTTTAGTAAGAGATTTTTAAAGGTGATCACTTATTATCACTATGAGAAAGAGAGTATTTCTATATGTGATGGATCTTAATTGCGTTTTGTGGATCTGATCACAACTTATTCAATAGTCTCTTACTGGGCGTTGTTGTTGACCAACCAAATGGTGATCACAACTTACTCAATAGTTTATAGGATTGAGGTTGGTAGGTGGTAGCTGCCATTAACAGTAGTATGTAATAGTTTTCCGTGTTTCTTAAGACTGCCCTTATATGTATTAATTGTAAACAATGGAGTTGGATTACCTTTTAGCATTCATCATATTTGAAATGTGAGTGAATGAATGTTTCATCACCTTTGTTCCTCAGAAGTGGTAATGTATGCCCTTTTTGAAAAAAAAAAGCTGAAAATTTTGAAATGTTAGGACTTAATTGTAGAGTTTATACAATTCGACTAGATGAGCCTTAACCTCAAGATCTTTAGTTTGAATAAGCACAAGTTGTCTAGGGAGTCACTGTATGAAATGCAAAAGGGCCAGGTAATTTGGAGATTTAAAGAAGTAGGGTGAGTATGGGCATCTTAAATTAGTAGAGAGTCAAGAAATCTAAATGGAGACTTTTGTTTTGCCTGCCTCAAGCCTTGGGGATTGGGATACCCGATTTTGTCCCATTTGCGTCTCTTATACATTGGGCAATAAAGTGCACCTTAGGCAAGCCTTTGACGACAATGTTTTCTAGTTAACATTAACCTGCAAGCAAAATGTGACTAGGTAAACAAAATTCATTTCTTTGATGAATCTGTCATGTGGGCTTTTGGGTACTTGGACGGTGATAGATTAGGTCTCTCAACAAGCAACATCCTTTTAGATTGTAAAGGATTGCGCCTGAAAACTTATCTAATGGTTGGCCTCATATTCACCTATTGATTGTTTATCTTTTTCTTACTCATGTTTCATCACCCATAGTCTGAATTACCTTCCAAGTTCCTTTTTCTTTTGATAAAGTAAGCATTTTTCCTATAGTAAGTAAATAATTTCATTGAATAAACTGCACCAAACTGGTGCTTCTTTATACAGCTAATACACACAATGCCTTTAAATTTGTCAAATGTAGGGTACATGAGAGAATCTAGTAAATTTTTCATGTTATGCACATTTCTCAATTTACATCATAATGCCTAAAAGTGCCAAAGGTTCCATTTCCCTGCTCTTTTCATCCTCCTTTTCCTGTTGAATACCCGACTTAGTAATGAATCTCTAACAATTGTTGGCGTTACTTATTCAATACTAAAAAAATTTCAAATTGTGCTACACAACAGTGCACAACCTGAAAGTGAAGTAATAAGTGATTCACATTGTTCCACAGCTTCTTTTCTATTTTGATAACCGAGAGATCTCAAGGGTCAGTGGCACACGGTTCGAACCTCGGTGGCAGACTTTCCGACCTCTTACTGATGAAAACACCAAACAGGACATCAAAATATGCAAATTTTACTTTACATTTGACATTGTTTAAAAGGAAAAATGATTTTTATTATTTATTACTCGAGACTTTTATTAAGTTTCAAGTGAATTAAATGTTTTGCCTTTTGTATGAGATTTTGGTGAAATTTCTTGAAAGAAATGAGTTTGAAGAGGTAATGGGAAAAAACCAAGGTGAAGAAGGAAAAAGGGACAACATTCTGTTGATTTCCTTTTTGAATCAATAGGGGGGGAGGTTTGGTAAATAAAATACACCGATGAGGATATTTTTGTCTCGAAAAAATAGTTTTCTGCTTCTTGGAAGAAGCTACAATTTATAGCTTCTTCCCAAACTGTTTCTGCTACTGCCCAAAATCATTTTTTCTGTTTTGGCCAACACCTCAATTCTCCTAAAAGAAAAAAGGTTATTTTTTAGCTTCCCAAAAGTAGAAATAGGCTATGTATTTTATTTTTCTTTAGACTTGTTCATTTTGTATTTTGTAAAGTTCTTACCATTTCCTTTGCTTATTCTTTTCTGCGTTTTCTGCCCTGGTTTTTGTTTAGACTTTAGAAATTTCTTTAAAAGATAGCTGTTAGTGGATTTTTTTCCCAACCACAGAATGGGCAGGTGCTTGAGCTACCAAAAACTTTTCACAAACTCCCAGGGAACTCCTTTCCCTGATTTTTATAAGCTTACATTTGGAAGTCTGGTTCATGTATCTAAAAAGAAACCACTATAAGTCAGGTAGGTGGACTGTAGCCAAATAGAATCCATTGCCGGCGATGAATGATTACTCTGTATTAAATAAATAACTCAGACTTAGTTCTGCCTTGATTATGGAGAGAATGGTAGTTGCTTCTTTTATTTCCTTGTTTGATTTCAGGAGTGTTGGACTGCGGATATAATTATCAGTACTCTATGTCACCTCGAAGGTAGAATGTATTGTGCATCATTTTATGTGCCTTGGGGAGGGACTGTGAATACATGGCATCTGTTGTAGACTGTCTAACAACAACTATTCTTTTGTTTTTTTGGATTAGTAAAGCCAATGAAATATTATCATGAGCAATTATGAGGAAGTTATCATCTCCACGAGACTAATTACATGCAATGAACACCATAATGCTTAAGAAGTTTAGTCTTGTGTGAAGGTTTATATTTACATGTGGGAAATGAGTACCCTCCCAAGAAATAAAAGAAAGTAAATCGAATTTAAATATGCAGATGAAGATACAAAAGTTCAATGTAATTTCAATCTAATTTGAATCATGAAAACAGAGAGCTGAACTGAATGTTTTTAATAGTTGTTGTTGCTGCACTTATTTAATCTGAATTATGACATTCCTTGTTGCGTTTTTTTCCTTTTCTGGTATATGGCCCCTCTCACGAAGGTAGAAAGAGTTGCAAAAGAAAGAACAGTGTTTTCCTCTAAAAGATAGTTGAAAAGTTTGACCTAGTCCTAATTATTGATCCAGTGTGGAACACCCTAAGCTGGTCTACTCATATTAGCTTAAGTAATTTCATTAGCCTAAATCAGATGGAGAATCAAATAAATGTGCTTTATCATGCATAATTATGCTTGTCTATTATCATGCAGATATATTGTTCTAAATGTGCCAAACCATTCTGGATGTCTTAGTTGTTTTGGTTAAATACGGCTATATGTGGCATTACCATCATCATATGTGATTATACTTGTGCTTGCTCAAAAAATGTCTCTTTCGTTCCTGTGATGCTCCCTGTGGCCTTTTGGGACTAAAAACTTGTATATGGTGTGGCTCCAGATATAGGGCAGTGACAAGTGCGTACTACCGAGGTGCTGTTGGAGCAATGCTAGTCTATGACATTACCAAACGTCAATCTTTTGATCATATCGCCAGGTGGTTGGAGGAACTGCGGGGCCATGCTGATAAAAACATTGTCATCATGCTTGTAGGCAACAAGACTGACTTGGGTAGTCTTCGTGCTGTACCTACTGAGGATGCGAAAGAGTTTGCTGAGAAAGAGAACTTGTTCTTTATTGAAACATCGGCCCTAGAATCAACAAATGTGGATACAGCTTTTGTTAATGTCTTGAC</genome_strand>
        <mrna_strand>GATCAACCCAAGTTTATGAATTAAGCACTACGAAGTTCAAGAACCCGATCTTTCTTCAATTTGATCGATCGGGTTATAG--TT-TT-T---GTTTAGAAAGATGTCAAAATTGTATGGAGGAGATTTCAATCAGAAAATAGATTATGTGTTCAAGGCGGTGCTGATCGGAGATTCTGCAGTTGGAAAATCGCAGTTATTGGCACGGTTTTCGAGGAATGAGTTTAGTCTGGATTCAAAGGCAACCATCGGTGTTGAGTTCCAGACGAGGACGTTAGAAATCGATCATAAGACTATTAAGGCTCAGATTTGGGATACTGCTGGTCAGGAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAGGGCAGTGACAAGTGCGTACTACCGAGGTGCTGTTGGAGCAATGCTGGTCTATGACATCACCAAACGTCAATCTTTTGATCATATCGCCAGGTGGTTGGAGGAACTACGGGGCCATGCTGATAAGAACATTGTCATCATGCTTGTAGGCAACAAGACCGACTTGGGTAGTCTTCGTGCTGTACCTACTGAGGATGCGAAAGAGTTTGCTGAGAAAGAGAACCTGTTCTTTATTGAAACATCGGNCCTAGAAGC-ACAAATGTGGATACAGCTTTTGTTAATGTCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548275" ref_strand="+" ref_description="SGN-E548275 [TUS-59-L7](-)">
      <seq>cgttagaaatcgatataaagactattaaggctcagatttgggatactgctggtcaggagagatatagggcagtgacaagtgcgtactaccgaggtgctgttggagcaatgctagtctatgacattaccaaacgtcaatcttttgatcatatcgccaggtggttggaggaactgcggggccatgctgataaaaacattgtcatcatgcttgtaggcaacaagactgacttgggtagtcttcgtgctgtacctactgaggatgcgaaagagtttgctgagaaagagaacttgttctttattgaaacatcggccctagaatcaacaaatgtggatacagcttttgttaatgtcttgacggagatatatagggttgtcagcaagaaatcccttgttgccaatgaggcagaatccgccgctgggagttcagctctcctcaggggaaaggaaattgttgttcctggccaaggacctgtaccaagtgggagctcatacagctgttgcagatcatagtaggagtcaatcgaagtggttctcaaagttgtataggtttttacatgtatcagatttcaatgctatgcacgtctatcaaatgcaaatctgagtgctactacaactacatgatgctacattggtattcatccactttcctctccctaatttgcgctttcgtcatttgtgtaaaaaagaatcacagttcaaaaccattaaatttcaatcttggtcttatgctaaatgtgcacttgaccgtcccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="22566" stop="27402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22866" g_stop="22926" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22927" i_stop="26406" i_length="3480">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26407" g_stop="27102" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="757" r_length="696" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E548275" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22866" e_stop="22926"/>
          <exon e_start="26407" e_stop="27102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTAGAAATCGATAATAAGACTATTAAGGCTCAGATTTGGGATACTGCTGGTCAGGAGAGGTAGTTTGAACTTCTTCTTCTTTAGCCCTTTCTCTGACTTTTTTTTTTTGTTTTTCGAGATTTATTTATAGTGATCATGATCCAGTGATATGTGTAAGATCTGTTGATATCTCATGGTGATTGTGATTTGGTCCAAGTTGTGGAGTTCGCTTGGTGTATTATGTGTTTGGTAAATATGGCGATGCAGTTTTTTGGCTGATATGTGCTTTTGATCATATGGATATCTGATTTGCTATACAATATCTAACATGCTTTAGTAAGAGATTTTTAAAGGTGATCACTTATTATCACTATGAGAAAGAGAGTATTTCTATATGTGATGGATCTTAATTGCGTTTTGTGGATCTGATCACAACTTATTCAATAGTCTCTTACTGGGCGTTGTTGTTGACCAACCAAATGGTGATCACAACTTACTCAATAGTTTATAGGATTGAGGTTGGTAGGTGGTAGCTGCCATTAACAGTAGTATGTAATAGTTTTCCGTGTTTCTTAAGACTGCCCTTATATGTATTAATTGTAAACAATGGAGTTGGATTACCTTTTAGCATTCATCATATTTGAAATGTGAGTGAATGAATGTTTCATCACCTTTGTTCCTCAGAAGTGGTAATGTATGCCCTTTTTGAAAAAAAAAAGCTGAAAATTTTGAAATGTTAGGACTTAATTGTAGAGTTTATACAATTCGACTAGATGAGCCTTAACCTCAAGATCTTTAGTTTGAATAAGCACAAGTTGTCTAGGGAGTCACTGTATGAAATGCAAAAGGGCCAGGTAATTTGGAGATTTAAAGAAGTAGGGTGAGTATGGGCATCTTAAATTAGTAGAGAGTCAAGAAATCTAAATGGAGACTTTTGTTTTGCCTGCCTCAAGCCTTGGGGATTGGGATACCCGATTTTGTCCCATTTGCGTCTCTTATACATTGGGCAATAAAGTGCACCTTAGGCAAGCCTTTGACGACAATGTTTTCTAGTTAACATTAACCTGCAAGCAAAATGTGACTAGGTAAACAAAATTCATTTCTTTGATGAATCTGTCATGTGGGCTTTTGGGTACTTGGACGGTGATAGATTAGGTCTCTCAACAAGCAACATCCTTTTAGATTGTAAAGGATTGCGCCTGAAAACTTATCTAATGGTTGGCCTCATATTCACCTATTGATTGTTTATCTTTTTCTTACTCATGTTTCATCACCCATAGTCTGAATTACCTTCCAAGTTCCTTTTTCTTTTGATAAAGTAAGCATTTTTCCTATAGTAAGTAAATAATTTCATTGAATAAACTGCACCAAACTGGTGCTTCTTTATACAGCTAATACACACAATGCCTTTAAATTTGTCAAATGTAGGGTACATGAGAGAATCTAGTAAATTTTTCATGTTATGCACATTTCTCAATTTACATCATAATGCCTAAAAGTGCCAAAGGTTCCATTTCCCTGCTCTTTTCATCCTCCTTTTCCTGTTGAATACCCGACTTAGTAATGAATCTCTAACAATTGTTGGCGTTACTTATTCAATACTAAAAAAATTTCAAATTGTGCTACACAACAGTGCACAACCTGAAAGTGAAGTAATAAGTGATTCACATTGTTCCACAGCTTCTTTTCTATTTTGATAACCGAGAGATCTCAAGGGTCAGTGGCACACGGTTCGAACCTCGGTGGCAGACTTTCCGACCTCTTACTGATGAAAACACCAAACAGGACATCAAAATATGCAAATTTTACTTTACATTTGACATTGTTTAAAAGGAAAAATGATTTTTATTATTTATTACTCGAGACTTTTATTAAGTTTCAAGTGAATTAAATGTTTTGCCTTTTGTATGAGATTTTGGTGAAATTTCTTGAAAGAAATGAGTTTGAAGAGGTAATGGGAAAAAACCAAGGTGAAGAAGGAAAAAGGGACAACATTCTGTTGATTTCCTTTTTGAATCAATAGGGGGGGAGGTTTGGTAAATAAAATACACCGATGAGGATATTTTTGTCTCGAAAAAATAGTTTTCTGCTTCTTGGAAGAAGCTACAATTTATAGCTTCTTCCCAAACTGTTTCTGCTACTGCCCAAAATCATTTTTTCTGTTTTGGCCAACACCTCAATTCTCCTAAAAGAAAAAAGGTTATTTTTTAGCTTCCCAAAAGTAGAAATAGGCTATGTATTTTATTTTTCTTTAGACTTGTTCATTTTGTATTTTGTAAAGTTCTTACCATTTCCTTTGCTTATTCTTTTCTGCGTTTTCTGCCCTGGTTTTTGTTTAGACTTTAGAAATTTCTTTAAAAGATAGCTGTTAGTGGATTTTTTTCCCAACCACAGAATGGGCAGGTGCTTGAGCTACCAAAAACTTTTCACAAACTCCCAGGGAACTCCTTTCCCTGATTTTTATAAGCTTACATTTGGAAGTCTGGTTCATGTATCTAAAAAGAAACCACTATAAGTCAGGTAGGTGGACTGTAGCCAAATAGAATCCATTGCCGGCGATGAATGATTACTCTGTATTAAATAAATAACTCAGACTTAGTTCTGCCTTGATTATGGAGAGAATGGTAGTTGCTTCTTTTATTTCCTTGTTTGATTTCAGGAGTGTTGGACTGCGGATATAATTATCAGTACTCTATGTCACCTCGAAGGTAGAATGTATTGTGCATCATTTTATGTGCCTTGGGGAGGGACTGTGAATACATGGCATCTGTTGTAGACTGTCTAACAACAACTATTCTTTTGTTTTTTTGGATTAGTAAAGCCAATGAAATATTATCATGAGCAATTATGAGGAAGTTATCATCTCCACGAGACTAATTACATGCAATGAACACCATAATGCTTAAGAAGTTTAGTCTTGTGTGAAGGTTTATATTTACATGTGGGAAATGAGTACCCTCCCAAGAAATAAAAGAAAGTAAATCGAATTTAAATATGCAGATGAAGATACAAAAGTTCAATGTAATTTCAATCTAATTTGAATCATGAAAACAGAGAGCTGAACTGAATGTTTTTAATAGTTGTTGTTGCTGCACTTATTTAATCTGAATTATGACATTCCTTGTTGCGTTTTTTTCCTTTTCTGGTATATGGCCCCTCTCACGAAGGTAGAAAGAGTTGCAAAAGAAAGAACAGTGTTTTCCTCTAAAAGATAGTTGAAAAGTTTGACCTAGTCCTAATTATTGATCCAGTGTGGAACACCCTAAGCTGGTCTACTCATATTAGCTTAAGTAATTTCATTAGCCTAAATCAGATGGAGAATCAAATAAATGTGCTTTATCATGCATAATTATGCTTGTCTATTATCATGCAGATATATTGTTCTAAATGTGCCAAACCATTCTGGATGTCTTAGTTGTTTTGGTTAAATACGGCTATATGTGGCATTACCATCATCATATGTGATTATACTTGTGCTTGCTCAAAAAATGTCTCTTTCGTTCCTGTGATGCTCCCTGTGGCCTTTTGGGACTAAAAACTTGTATATGGTGTGGCTCCAGATATAGGGCAGTGACAAGTGCGTACTACCGAGGTGCTGTTGGAGCAATGCTAGTCTATGACATTACCAAACGTCAATCTTTTGATCATATCGCCAGGTGGTTGGAGGAACTGCGGGGCCATGCTGATAAAAACATTGTCATCATGCTTGTAGGCAACAAGACTGACTTGGGTAGTCTTCGTGCTGTACCTACTGAGGATGCGAAAGAGTTTGCTGAGAAAGAGAACTTGTTCTTTATTGAAACATCGGCCCTAGAATCAACAAATGTGGATACAGCTTTTGTTAATGTCTTGACGGAGATATATAGGGTTGTCAGCAAGAAATCCCTTGTTGCCAATGAGGCAGAATCCGCCGCTGGGAGTTCAGCTCTCCTCAGGGGAAAGGAAATTGTTGTTCCTGGCCAAGGACCTGTACCAAGTGGGAGCTCATACAGCTGTTGCAGATCATAGTAGGAGTCAATCGAAGTGGTTCTCAAAGTTGTATAGGTTTTTACATGTATCAGATTTCAATGCTATGCACGTCTATCAAATGCAAATCTGAGTGCTACTACAACTACATGATGCTACATTGGTATTCATCCACTTTCCTCTCTCTAATTTGCGCTTTCGTCATTTGTGTAAAAAAGAATCACAGTTCAAAACCATTAAATTTCAATCTTGGTCTTATGCTAAATGTGCACTTGACCGTCCCAAAAAGA</genome_strand>
        <mrna_strand>CGTTAGAAATCGATATAAAGACTATTAAGGCTCAGATTTGGGATACTGCTGGTCAGGAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAGGGCAGTGACAAGTGCGTACTACCGAGGTGCTGTTGGAGCAATGCTAGTCTATGACATTACCAAACGTCAATCTTTTGATCATATCGCCAGGTGGTTGGAGGAACTGCGGGGCCATGCTGATAAAAACATTGTCATCATGCTTGTAGGCAACAAGACTGACTTGGGTAGTCTTCGTGCTGTACCTACTGAGGATGCGAAAGAGTTTGCTGAGAAAGAGAACTTGTTCTTTATTGAAACATCGGCCCTAGAATCAACAAATGTGGATACAGCTTTTGTTAATGTCTTGACGGAGATATATAGGGTTGTCAGCAAGAAATCCCTTGTTGCCAATGAGGCAGAATCCGCCGCTGGGAGTTCAGCTCTCCTCAGGGGAAAGGAAATTGTTGTTCCTGGCCAAGGACCTGTACCAAGTGGGAGCTCATACAGCTGTTGCAGATCATAGTAGGAGTCAATCGAAGTGGTTCTCAAAGTTGTATAGGTTTTTACATGTATCAGATTTCAATGCTATGCACGTCTATCAAATGCAAATCTGAGTGCTACTACAACTACATGATGCTACATTGGTATTCATCCACTTTCCTCTCCCTAATTTGCGCTTTCGTCATTTGTGTAAAAAAGAATCACAGTTCAAAACCATTAAATTTCAATCTTGGTCTTATGCTAAATGTGCACTTGACCGTCCCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E605085" ref_strand="+" ref_description="SGN-E605085 [20996]">
      <seq>gcaatgctggtctatgacatcaccaaacgtcaatcttttgatcatatcgccaggtggttggaggaactacggggccatgctgataagaacattgtcatcatgcttgtaggcaacaagaccgacttgggtagtcttcgtgctgtacctactgaggatgcgaagagtttgctgagaaagagaacctgttctttattgaaacatcggccctagaagcaacaaatgtggatacagcttttgttaatgtcttgacggagatatatagggttgtcagcaagaaatcccttgttgccaacgaggcagaatccaccgctgggagttcagctctcctcaggggaaaggaaattgttgttcctggccaaggacttgtaccaagtgggagctcatacagctgttgcagatcatcataggagtcggtcaaagtggttctcaaagttgtatatgtttttacgtgtatcagatttcaattccatgcacgtctatcaaatgcaaatttgagtgctacaactacatgatgctacattggtattcatccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="26150" stop="27286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26450" g_stop="26975" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="533" polyA_stop="545"/>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E605085" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E605085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26450" e_stop="26975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATGCTAGTCTATGACATTACCAAACGTCAATCTTTTGATCATATCGCCAGGTGGTTGGAGGAACTGCGGGGCCATGCTGATAAAAACATTGTCATCATGCTTGTAGGCAACAAGACTGACTTGGGTAGTCTTCGTGCTGTACCTACTGAGGATGCGAAAGAGTTTGCTGAGAAAGAGAACTTGTTCTTTATTGAAACATCGGCCCTAGAATCAACAAATGTGGATACAGCTTTTGTTAATGTCTTGACGGAGATATATAGGGTTGTCAGCAAGAAATCCCTTGTTGCCAATGAGGCAGAATCCGCCGCTGGGAGTTCAGCTCTCCTCAGGGGAAAGGAAATTGTTGTTCCTGGCCAAGGACCTGTACCAAGTGGGAGCTCATACAGCTGTTGCAGATCATAGTAGGAGTCAATCGAAGTGGTTCTCAAAGTTGTATAGGTTTTTACATGTATCAGATTTCAATGCTATGCACGTCTATCAAATGCAAATCTGAGTGCTACTACAACTACATGATGCTACATTG</genome_strand>
        <mrna_strand>GCAATGCTGGTCTATGACATCACCAAACGTCAATCTTTTGATCATATCGCCAGGTGGTTGGAGGAACTACGGGGCCATGCTGATAAGAACATTGTCATCATGCTTGTAGGCAACAAGACCGACTTGGGTAGTCTTCGTGCTGTACCTACTGAGGATGCG-AAGAGTTTGCTGAGAAAGAGAACCTGTTCTTTATTGAAACATCGGCCCTAGAAGCAACAAATGTGGATACAGCTTTTGTTAATGTCTTGACGGAGATATATAGGGTTGTCAGCAAGAAATCCCTTGTTGCCAACGAGGCAGAATCCACCGCTGGGAGTTCAGCTCTCCTCAGGGGAAAGGAAATTGTTGTTCCTGGCCAAGGACTTGTACCAAGTGGGAGCTCATACAGCTGTTGCAGATCATCATAGGAGTCGGTCAAAGTGGTTCTCAAAGTTGTATATGTTTTTACGTGTATCAGATTTCAATTCCATGCACGTCTATCAAATGCAAATTTGAGTG---CTACAACTACATGATGCTACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464339" ref_strand="+" ref_description="SGN-E464339 [cPRO-17-P15]">
      <seq>gatatatagggttgtcagcaagaaatcccttgttgccaacgaggcagaatccgccgctgggagttcagctctcctcaggggaaaggaaattgttgttcctggccaaggacctgtaccaagtgggagctcatacagctgttgcagatcatcataggagtcgatcaaagtggttctcaaagttgtatatgtttttacctgtgtcagatttcaattccatgcacgtctatcaaatgcaaatttgagtgctacaactacatgatgctacattggtattcatccactttcctctctctaaatttgcactttcgtcataagtgtaaaaagaattacagttcaaaaccattaaatttcaatcttggtcttatgctaaatgtgtatttgaccatcccaaaaaaggagtctgactaatcatccttcgtgactgaaacttttatgatgaacattttgcaacaaatctttatatgataagacttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="26404" stop="27472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26704" g_stop="27185" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E464339" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E464339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26704" e_stop="27185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATATAGGGTTGTCAGCAAGAAATCCCTTGTTGCCAATGAGGCAGAATCCGCCGCTGGGAGTTCAGCTCTCCTCAGGGGAAAGGAAATTGTTGTTCCTGGCCAAGGACCTGTACCAAGTGGGAGCTCATACAGCTGTTGCAGATCATAGTAGGAGTCAATCGAAGTGGTTCTCAAAGTTGTATAGGTTTTTACATGTATCAGATTTCAATGCTATGCACGTCTATCAAATGCAAATCTGAGTGCTACTACAACTACATGATGCTACATTGGTATTCATCCACTTTCCTCTCTCT-AATTTGCGCTTTCGTCATTTGTGTAAAAAAGAATCACAGTTCAAAACCATTAAATTTCAATCTTGGTCTTATGCTAAATGTGCACTTGACCGTCCC-AAAAA-GAGTCTGATTAATCATCCTCTGTGACTGAAATTTTTATGATGAATATTTTGCAACGAATCTATAATCTGCTACTCTTTCTTGCTT</genome_strand>
        <mrna_strand>GATATATAGGGTTGTCAGCAAGAAATCCCTTGTTGCCAACGAGGCAGAATCCGCCGCTGGGAGTTCAGCTCTCCTCAGGGGAAAGGAAATTGTTGTTCCTGGCCAAGGACCTGTACCAAGTGGGAGCTCATACAGCTGTTGCAGATCATCATAGGAGTCGATCAAAGTGGTTCTCAAAGTTGTATATGTTTTTACCTGTGTCAGATTTCAATTCCATGCACGTCTATCAAATGCAAATTTGAGTG---CTACAACTACATGATGCTACATTGGTATTCATCCACTTTCCTCTCTCTAAATTTGCACTTTCGTCATAAGTGT-AAAAAGAATTACAGTTCAAAACCATTAAATTTCAATCTTGGTCTTATGCTAAATGTGTATTTGACCATCCCAAAAAAGGAGTCTGACTAATCATCCTTCGTGACTGAAACTTTTATGATGAACATTTTGCAACAAATCT-TTATATGATAAGACTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390226" ref_strand="+" ref_description="SGN-E390226 [TUS-39-N24](-)">
      <seq>caaaaaatattttaaaaaataaaatgactagtcgtactttagtaatggcgatattagtaataacgtacaatagtattgcggtgaaaggaagcaacggtcatccctgtagcagcacattcttttcagcgttgattcagctgataccttgtagggcatcggtggttccgttcagttcggtaccaccgagcgaagcgtgctgcgcttcgatcaaggctttagggcagccatgtctctgtgttgttatcaatggccctcttatttttggtgttgatagaaacatggccgtacagcttcttgagaagtgcactgccaactttgaacaatgtgaatttggaaagtaggagatactagattgattctagtaggcgtggtgaaggagaagtttatagatcaataaattgtgcaggggagcttagcaactctgcacaattagaaatatttattaaatcaaattaagtgttcacttaattgttataataatttatttagcttgccttaatatcattgttatagtaataatggccaacattaatattatgtaatgcaaaatggtcgcttcgaaatggtaattaaacattagtgataagaacttagtgaatatttatcattttgatgtcattacattagttcaaatttatgcgattatcaatctttacaaaaaaaaaaataattatgaatcgatatatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33133" stop="31109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32833" g_stop="32509" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32508" i_stop="31782" i_length="727">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31781" g_stop="31407" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="699" r_length="375" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E390226" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32833" e_stop="32509"/>
          <exon e_start="31781" e_stop="31407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAATATTTTTAAAAAATAAAATGACTAGTCGTACTTTAGTAATGCTGATATTAGTAATAACGTACAATAGTATTGCGGTGAAAGGAAGCAACGGTCATCCCTGTAGCAGCACATTCTTTTCAGCGTTGATTCAGCTGATACCTTGTAGGGCATCGGTGGTTCCGTTCAGTTCGGTACCACCGAGCGAAGCGTGCTGCGCTTCGATCAAGGCTTTAGGGCAGCCATGTCTCTGTGTTCTTATCAATGGCCCTCCTATTTCTGGTGTTGATCGAAACATGGCCGTACAGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAATGTAAAAATCTATCCACCTCTCTTTTATCGAACGTTTTCTGCAAAATGTTTTTCGACCAAATGTTATTTCGAAGAAAAAATGACTAGTATAAGAATTAAATAGAAATAATAGTGCAATTTTGAGCTATCGAGAAATTTTTGAATATCTAGTTTGTAAAAATGAATAAGTATCCTTTAGACTATGATCGAAATATCAAAGACACAATTTAACTAAACTAAGGTCCTATTATCCCTGAACTTATTTTTTTTGGTAATTTTGCGCATCTTTTTAGCTTACGATGCACCAAATATCTCCCACGCGCCTCAATTGCGTGGAGTCACAGAGTGTGCCACGTAAGACAAAACATGCAAAAATTTACCAAAAAAAATTAAGTTCATGGATTAATAGGACCTTAATTTAGTTAAAGTGTATCTCTGAAATTTCGATTATAATCTAAGGGGTACTTGTGCATTTATCCTATTTAGTTTTGACGATAGTTAATGAATGTCTATTTTGAGCAATTTTAAAAGTTTGTAAAAGAAAATGATTTGTGTTTGTGAAGGAAGTTATATTTGCCGTTTTTGTTAGGAAGAATCTTAGATGTACAATTATTGACTATCAGAACTTTTACTTTAATAGTGAGGGTTCGATTCTATGCCTTGTAATCTTCCTTTCGTTTCTCCTTCTCACGCTTCCAAATTATTTTTATTTTTATTAGAAAGTTATCTGTTGTTTTTCTCTTTTTCAGGTGAATTTGGAAAGTAGGAGATACTAGATTGATTCTAGTAGGCGTGGTGAAGGAGAAGTCTATAGATCAATAAATTGTGCAGGGGAGCTTAGCAACTCTGCACAATTAGAAATATTTACTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTTGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATGTAATGCAAAATGGTCGCTTCGAAATGGTAATTAAACATTAGTGATAAGAACTTAGTGAATATTTATCATTTTGATGTCATTACATTAGTTCAAATTTATGCGATTATCAATCTTTACAAAAAAAAAAAAAATTATGAATCGATATATCTATGATATAATT</genome_strand>
        <mrna_strand>CAAAAAATA-TTTTAAAAAATAAAATGACTAGTCGTACTTTAGTAATGGCGATATTAGTAATAACGTACAATAGTATTGCGGTGAAAGGAAGCAACGGTCATCCCTGTAGCAGCACATTCTTTTCAGCGTTGATTCAGCTGATACCTTGTAGGGCATCGGTGGTTCCGTTCAGTTCGGTACCACCGAGCGAAGCGTGCTGCGCTTCGATCAAGGCTTTAGGGCAGCCATGTCTCTGTGTTGTTATCAATGGCCCTCTTATTTTTGGTGTTGATAGAAACATGGCCGTACAGCTTCTTGAGAAGTGCACTGCCAACTTTGAACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTTGGAAAGTAGGAGATACTAGATTGATTCTAGTAGGCGTGGTGAAGGAGAAGTTTATAGATCAATAAATTGTGCAGGGGAGCTTAGCAACTCTGCACAATTAGAAATATTTATTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTTGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATGTAATGCAAAATGGTCGCTTCGAAATGGTAATTAAACATTAGTGATAAGAACTTAGTGAATATTTATCATTTTGATGTCATTACATTAGTTCAAATTTATGCGATTATCAATCTTTACAAAAAAAAAAATAATTATGAATCGATATATCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390499" ref_strand="+" ref_description="SGN-E390499 [TUS-40-M23](-)">
      <seq>caaaaaatatttttaaaaaataaaatgactagtcgtactttagtaatgctgatattagtaataacgtacaatagtattgcggtgaaaggaagcaacggtcatccctgtagcagcacattcttttcagcgttgattcagctgataccttgtagggcatcggtggttccgttcagttcggtaccaccgagcgaagcgtgctgcgcttcgatcaaggctttagggcagccatgtctctgtgttcttatcaatggccctcctatttctggtgttgatcgaaacatggccgtacagcttcctgagaagtgcactgccaactttgaacaatgtgaatttggaaagtaggagatactagattgattttagtaggcgtggtgaaggagaagtctatagatcaataaattgtgcaggggagcttagcaactctgcacaattagaaatatttactaaatcaaattaagtgttcacttaattgttataataatttatttagcttgccttaatatcattgttatagtaataatggccaacattaatattatgtaatgcaaaatggtcgcttcgaaatggtaattaaacattagtgataagaacttagtgaatatttatcattttgatgtcattacattagttcaaatttatgcgattatcaatctttacaaaaaaaaaaaaattatgaatcgatatatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33133" stop="31109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32833" g_stop="32509" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32508" i_stop="31782" i_length="727">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31781" g_stop="31407" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="699" r_length="374" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E390499" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32833" e_stop="32509"/>
          <exon e_start="31781" e_stop="31407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAATATTTTTAAAAAATAAAATGACTAGTCGTACTTTAGTAATGCTGATATTAGTAATAACGTACAATAGTATTGCGGTGAAAGGAAGCAACGGTCATCCCTGTAGCAGCACATTCTTTTCAGCGTTGATTCAGCTGATACCTTGTAGGGCATCGGTGGTTCCGTTCAGTTCGGTACCACCGAGCGAAGCGTGCTGCGCTTCGATCAAGGCTTTAGGGCAGCCATGTCTCTGTGTTCTTATCAATGGCCCTCCTATTTCTGGTGTTGATCGAAACATGGCCGTACAGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAATGTAAAAATCTATCCACCTCTCTTTTATCGAACGTTTTCTGCAAAATGTTTTTCGACCAAATGTTATTTCGAAGAAAAAATGACTAGTATAAGAATTAAATAGAAATAATAGTGCAATTTTGAGCTATCGAGAAATTTTTGAATATCTAGTTTGTAAAAATGAATAAGTATCCTTTAGACTATGATCGAAATATCAAAGACACAATTTAACTAAACTAAGGTCCTATTATCCCTGAACTTATTTTTTTTGGTAATTTTGCGCATCTTTTTAGCTTACGATGCACCAAATATCTCCCACGCGCCTCAATTGCGTGGAGTCACAGAGTGTGCCACGTAAGACAAAACATGCAAAAATTTACCAAAAAAAATTAAGTTCATGGATTAATAGGACCTTAATTTAGTTAAAGTGTATCTCTGAAATTTCGATTATAATCTAAGGGGTACTTGTGCATTTATCCTATTTAGTTTTGACGATAGTTAATGAATGTCTATTTTGAGCAATTTTAAAAGTTTGTAAAAGAAAATGATTTGTGTTTGTGAAGGAAGTTATATTTGCCGTTTTTGTTAGGAAGAATCTTAGATGTACAATTATTGACTATCAGAACTTTTACTTTAATAGTGAGGGTTCGATTCTATGCCTTGTAATCTTCCTTTCGTTTCTCCTTCTCACGCTTCCAAATTATTTTTATTTTTATTAGAAAGTTATCTGTTGTTTTTCTCTTTTTCAGGTGAATTTGGAAAGTAGGAGATACTAGATTGATTCTAGTAGGCGTGGTGAAGGAGAAGTCTATAGATCAATAAATTGTGCAGGGGAGCTTAGCAACTCTGCACAATTAGAAATATTTACTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTTGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATGTAATGCAAAATGGTCGCTTCGAAATGGTAATTAAACATTAGTGATAAGAACTTAGTGAATATTTATCATTTTGATGTCATTACATTAGTTCAAATTTATGCGATTATCAATCTTTACAAAAAAAAAAAAAATTATGAATCGATATATCTATGATATAATT</genome_strand>
        <mrna_strand>CAAAAAATATTTTTAAAAAATAAAATGACTAGTCGTACTTTAGTAATGCTGATATTAGTAATAACGTACAATAGTATTGCGGTGAAAGGAAGCAACGGTCATCCCTGTAGCAGCACATTCTTTTCAGCGTTGATTCAGCTGATACCTTGTAGGGCATCGGTGGTTCCGTTCAGTTCGGTACCACCGAGCGAAGCGTGCTGCGCTTCGATCAAGGCTTTAGGGCAGCCATGTCTCTGTGTTCTTATCAATGGCCCTCCTATTTCTGGTGTTGATCGAAACATGGCCGTACAGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTTGGAAAGTAGGAGATACTAGATTGATTTTAGTAGGCGTGGTGAAGGAGAAGTCTATAGATCAATAAATTGTGCAGGGGAGCTTAGCAACTCTGCACAATTAGAAATATTTACTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTTGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATGTAATGCAAAATGGTCGCTTCGAAATGGTAATTAAACATTAGTGATAAGAACTTAGTGAATATTTATCATTTTGATGTCATTACATTAGTTCAAATTTATGCGATTATCAATCTTTAC-AAAAAAAAAAAAATTATGAATCGATATATCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314480" ref_strand="+" ref_description="SGN-E314480 [cTOB-1-O21]">
      <seq>atatttttaaaaaataaaatgactagtcgtactttagtaatgctgatattagtaataacgtacaatagtattgcggtgaaaggaagcaacggtcatccctgtagcagcacattcttttcagcgttgattcagctgataccttgtagggcatcggtggttccgttcagttcggtaccaccgagcgaagcgtgctgcgcttcgatcaaggctttagggcagccatgtctctgtgttcttatcaatggccctcctatttctggtgttgatcgaaacatggccgtacagcttcctgagaagtgcactgccaactttgaacaatgtgaatttggaaagtaggagatactagattgattctagtaggcgtggtgaaggagaagtctatagatcaataaattgtgcaggggagcttagcaactctgcacaattagaaatatttactaaatcaaattaagtgttcacttaattgttataataatttatttagcttgccttaatatcattgttatagtaataatggccaacattaatattatgtaatgcaaaatggtcgcttcgaaatggtaattaaacattagtgaatagaacttagtgaatatttatcattttgatgtcattacattagttcaaatttatgcgattataaatctttacaaaaaaaaaaaaattattaatcgataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33127" stop="31121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32827" g_stop="32509" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32508" i_stop="31782" i_length="727">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31781" g_stop="31424" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="676" r_length="357" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="677" polyA_stop="689"/>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E314480" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32827" e_stop="32509"/>
          <exon e_start="31781" e_stop="31424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTTTAAAAAATAAAATGACTAGTCGTACTTTAGTAATGCTGATATTAGTAATAACGTACAATAGTATTGCGGTGAAAGGAAGCAACGGTCATCCCTGTAGCAGCACATTCTTTTCAGCGTTGATTCAGCTGATACCTTGTAGGGCATCGGTGGTTCCGTTCAGTTCGGTACCACCGAGCGAAGCGTGCTGCGCTTCGATCAAGGCTTTAGGGCAGCCATGTCTCTGTGTTCTTATCAATGGCCCTCCTATTTCTGGTGTTGATCGAAACATGGCCGTACAGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAATGTAAAAATCTATCCACCTCTCTTTTATCGAACGTTTTCTGCAAAATGTTTTTCGACCAAATGTTATTTCGAAGAAAAAATGACTAGTATAAGAATTAAATAGAAATAATAGTGCAATTTTGAGCTATCGAGAAATTTTTGAATATCTAGTTTGTAAAAATGAATAAGTATCCTTTAGACTATGATCGAAATATCAAAGACACAATTTAACTAAACTAAGGTCCTATTATCCCTGAACTTATTTTTTTTGGTAATTTTGCGCATCTTTTTAGCTTACGATGCACCAAATATCTCCCACGCGCCTCAATTGCGTGGAGTCACAGAGTGTGCCACGTAAGACAAAACATGCAAAAATTTACCAAAAAAAATTAAGTTCATGGATTAATAGGACCTTAATTTAGTTAAAGTGTATCTCTGAAATTTCGATTATAATCTAAGGGGTACTTGTGCATTTATCCTATTTAGTTTTGACGATAGTTAATGAATGTCTATTTTGAGCAATTTTAAAAGTTTGTAAAAGAAAATGATTTGTGTTTGTGAAGGAAGTTATATTTGCCGTTTTTGTTAGGAAGAATCTTAGATGTACAATTATTGACTATCAGAACTTTTACTTTAATAGTGAGGGTTCGATTCTATGCCTTGTAATCTTCCTTTCGTTTCTCCTTCTCACGCTTCCAAATTATTTTTATTTTTATTAGAAAGTTATCTGTTGTTTTTCTCTTTTTCAGGTGAATTTGGAAAGTAGGAGATACTAGATTGATTCTAGTAGGCGTGGTGAAGGAGAAGTCTATAGATCAATAAATTGTGCAGGGGAGCTTAGCAACTCTGCACAATTAGAAATATTTACTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTTGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATGTAATGCAAAATGGTCGCTTCGAAATGGTAATTAAACATTAGTGATAAGAACTTAGTGAATATTTATCATTTTGATGTCATTACATTAGTTCAAATTTATGCGATTATCAATCTTTACAAAAAAAAAAAAAATTATGAATCGAT</genome_strand>
        <mrna_strand>ATATTTTTAAAAAATAAAATGACTAGTCGTACTTTAGTAATGCTGATATTAGTAATAACGTACAATAGTATTGCGGTGAAAGGAAGCAACGGTCATCCCTGTAGCAGCACATTCTTTTCAGCGTTGATTCAGCTGATACCTTGTAGGGCATCGGTGGTTCCGTTCAGTTCGGTACCACCGAGCGAAGCGTGCTGCGCTTCGATCAAGGCTTTAGGGCAGCCATGTCTCTGTGTTCTTATCAATGGCCCTCCTATTTCTGGTGTTGATCGAAACATGGCCGTACAGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTTGGAAAGTAGGAGATACTAGATTGATTCTAGTAGGCGTGGTGAAGGAGAAGTCTATAGATCAATAAATTGTGCAGGGGAGCTTAGCAACTCTGCACAATTAGAAATATTTACTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTTGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATGTAATGCAAAATGGTCGCTTCGAAATGGTAATTAAACATTAGTGAATAGAACTTAGTGAATATTTATCATTTTGATGTCATTACATTAGTTCAAATTTATGCGATTATAAATCTTTAC-AAAAAAAAAAAAATTATTAATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228716" ref_strand="+" ref_description="SGN-E228716 [cLEL-29-O2](-)">
      <seq>gcacgaggaaacatggccgtacagcttcctgagaagtgcactgccaactttgaacaatgtgaatttggaaagtaggagatactagattgattctagtaggcgtggtgaaggagaagtctatagatcaataaattgtgcaggggagcttagcaactctgcccaattagaaatatttactaaatcaaattaagtgttcacttaattgttataataatttatttagcttgccttaatatcattgttatagtaataatggccaacattaatattatgtaatgcaaaatggtcgcttcgaaatggtaattaaacattagtgataagaacttagtgaatatttatcattttgatgtcattacattagttcaaatttatgcgattatcaatctttacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="32859" stop="31136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32566" g_stop="32509" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32508" i_stop="31782" i_length="727">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31781" g_stop="31433" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="407" r_length="349" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E228716" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32566" e_stop="32509"/>
          <exon e_start="31781" e_stop="31433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATCGAAACATGGCCGTACAGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAATGTAAAAATCTATCCACCTCTCTTTTATCGAACGTTTTCTGCAAAATGTTTTTCGACCAAATGTTATTTCGAAGAAAAAATGACTAGTATAAGAATTAAATAGAAATAATAGTGCAATTTTGAGCTATCGAGAAATTTTTGAATATCTAGTTTGTAAAAATGAATAAGTATCCTTTAGACTATGATCGAAATATCAAAGACACAATTTAACTAAACTAAGGTCCTATTATCCCTGAACTTATTTTTTTTGGTAATTTTGCGCATCTTTTTAGCTTACGATGCACCAAATATCTCCCACGCGCCTCAATTGCGTGGAGTCACAGAGTGTGCCACGTAAGACAAAACATGCAAAAATTTACCAAAAAAAATTAAGTTCATGGATTAATAGGACCTTAATTTAGTTAAAGTGTATCTCTGAAATTTCGATTATAATCTAAGGGGTACTTGTGCATTTATCCTATTTAGTTTTGACGATAGTTAATGAATGTCTATTTTGAGCAATTTTAAAAGTTTGTAAAAGAAAATGATTTGTGTTTGTGAAGGAAGTTATATTTGCCGTTTTTGTTAGGAAGAATCTTAGATGTACAATTATTGACTATCAGAACTTTTACTTTAATAGTGAGGGTTCGATTCTATGCCTTGTAATCTTCCTTTCGTTTCTCCTTCTCACGCTTCCAAATTATTTTTATTTTTATTAGAAAGTTATCTGTTGTTTTTCTCTTTTTCAGGTGAATTTGGAAAGTAGGAGATACTAGATTGATTCTAGTAGGCGTGGTGAAGGAGAAGTCTATAGATCAATAAATTGTGCAGGGGAGCTTAGCAACTCTGCACAATTAGAAATATTTACTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTTGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATGTAATGCAAAATGGTCGCTTCGAAATGGTAATTAAACATTAGTGATAAGAACTTAGTGAATATTTATCATTTTGATGTCATTACATTAGTTCAAATTTATGCGATTATCAATCTTTACAAAAAAAAAAAAAATTA</genome_strand>
        <mrna_strand>GCACGAGGAAACATGGCCGTACAGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTTGGAAAGTAGGAGATACTAGATTGATTCTAGTAGGCGTGGTGAAGGAGAAGTCTATAGATCAATAAATTGTGCAGGGGAGCTTAGCAACTCTGCCCAATTAGAAATATTTACTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTTGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATGTAATGCAAAATGGTCGCTTCGAAATGGTAATTAAACATTAGTGATAAGAACTTAGTGAATATTTATCATTTTGATGTCATTACATTAGTTCAAATTTATGCGATTATCAATCTTTACAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229196" ref_strand="+" ref_description="SGN-E229196 [cLEL-29-O2](-)">
      <seq>agcttcctgagaagtgcactgccaactttgaacaatgtgaatttggaaagtaggagatactagattgattctagtaggcgtggtgaaggagaagtctatagatcaataaattgtgcaggggagcttagcaactctgcacaattagaaatatttactaaatcaaattaagtgttcacttaattgttataataatttatttagcttgccttaatatcattgttatagtaataatggccaacattaatattatgtaatgcaaaatggtcgcttcgaaatggtaatttaaacattagtgataagaacttagtgaatatttatcattttgatgtcattacattagttcaaatttatgcgattatcaatcttaacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="32844" stop="31136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32544" g_stop="32509" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32508" i_stop="31782" i_length="727">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31781" g_stop="31433" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="386" r_length="350" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E229196" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32544" e_stop="32509"/>
          <exon e_start="31781" e_stop="31433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAATGTAAAAATCTATCCACCTCTCTTTTATCGAACGTTTTCTGCAAAATGTTTTTCGACCAAATGTTATTTCGAAGAAAAAATGACTAGTATAAGAATTAAATAGAAATAATAGTGCAATTTTGAGCTATCGAGAAATTTTTGAATATCTAGTTTGTAAAAATGAATAAGTATCCTTTAGACTATGATCGAAATATCAAAGACACAATTTAACTAAACTAAGGTCCTATTATCCCTGAACTTATTTTTTTTGGTAATTTTGCGCATCTTTTTAGCTTACGATGCACCAAATATCTCCCACGCGCCTCAATTGCGTGGAGTCACAGAGTGTGCCACGTAAGACAAAACATGCAAAAATTTACCAAAAAAAATTAAGTTCATGGATTAATAGGACCTTAATTTAGTTAAAGTGTATCTCTGAAATTTCGATTATAATCTAAGGGGTACTTGTGCATTTATCCTATTTAGTTTTGACGATAGTTAATGAATGTCTATTTTGAGCAATTTTAAAAGTTTGTAAAAGAAAATGATTTGTGTTTGTGAAGGAAGTTATATTTGCCGTTTTTGTTAGGAAGAATCTTAGATGTACAATTATTGACTATCAGAACTTTTACTTTAATAGTGAGGGTTCGATTCTATGCCTTGTAATCTTCCTTTCGTTTCTCCTTCTCACGCTTCCAAATTATTTTTATTTTTATTAGAAAGTTATCTGTTGTTTTTCTCTTTTTCAGGTGAATTTGGAAAGTAGGAGATACTAGATTGATTCTAGTAGGCGTGGTGAAGGAGAAGTCTATAGATCAATAAATTGTGCAGGGGAGCTTAGCAACTCTGCACAATTAGAAATATTTACTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTTGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATGTAATGCAAAATGGTCGCTTCGAAATGGTAA-TTAAACATTAGTGATAAGAACTTAGTGAATATTTATCATTTTGATGTCATTACATTAGTTCAAATTTATGCGATTATCAATCTTTACAAAAAAAAAAAAAATTA</genome_strand>
        <mrna_strand>AGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTTGGAAAGTAGGAGATACTAGATTGATTCTAGTAGGCGTGGTGAAGGAGAAGTCTATAGATCAATAAATTGTGCAGGGGAGCTTAGCAACTCTGCACAATTAGAAATATTTACTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTTGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATGTAATGCAAAATGGTCGCTTCGAAATGGTAATTTAAACATTAGTGATAAGAACTTAGTGAATATTTATCATTTTGATGTCATTACATTAGTTCAAATTTATGCGATTATCAATCTTAACAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687954" ref_strand="+" ref_description="SGN-E687954 [T3_tus_81_M14]">
      <seq>aatatttttaaaaaataaaatgactagtcgtactttagtaatgctgatattagtaataacgtacaatagtattgcggtgaaaggaagcaacggtcatccctgtagcagcacattcttttcagcgttgattcagctgataccttgtagggcatcggtggttccgttcagttcggtaccaccgagcgaagcgtgctgcgcttcgatcaaggctttagggcagccatgtctctgtgttcttatcaatggccctcctatttctggtgttgatcgaaacatggccgtacagcttcctgagaagtgcactgccaactttgaacaatgtgaatttggaaagtaggagatactagattgattctagtaggcgtggtgaaggagaagtctatagatcaataaattgtgcaggggagcttagcaactctgcacaattagaaatatttactaaatcaaattaagtgttcacttaattgttataataatttatttagcttgccttaatatcattgttatagtaataatggccaacattaatattatgtaatgcaaaatggtcgcttcgaaatggtaattaaacattagtgataagaacttagtgaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33128" stop="31206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32828" g_stop="32509" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32508" i_stop="31782" i_length="727">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31781" g_stop="31507" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="595" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31506" i_stop="31450" i_length="57">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31449" g_stop="31439" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="606" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E687954" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32828" e_stop="32509"/>
          <exon e_start="31781" e_stop="31507"/>
          <exon e_start="31449" e_stop="31439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTTTTAAAAAATAAAATGACTAGTCGTACTTTAGTAATGCTGATATTAGTAATAACGTACAATAGTATTGCGGTGAAAGGAAGCAACGGTCATCCCTGTAGCAGCACATTCTTTTCAGCGTTGATTCAGCTGATACCTTGTAGGGCATCGGTGGTTCCGTTCAGTTCGGTACCACCGAGCGAAGCGTGCTGCGCTTCGATCAAGGCTTTAGGGCAGCCATGTCTCTGTGTTCTTATCAATGGCCCTCCTATTTCTGGTGTTGATCGAAACATGGCCGTACAGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAATGTAAAAATCTATCCACCTCTCTTTTATCGAACGTTTTCTGCAAAATGTTTTTCGACCAAATGTTATTTCGAAGAAAAAATGACTAGTATAAGAATTAAATAGAAATAATAGTGCAATTTTGAGCTATCGAGAAATTTTTGAATATCTAGTTTGTAAAAATGAATAAGTATCCTTTAGACTATGATCGAAATATCAAAGACACAATTTAACTAAACTAAGGTCCTATTATCCCTGAACTTATTTTTTTTGGTAATTTTGCGCATCTTTTTAGCTTACGATGCACCAAATATCTCCCACGCGCCTCAATTGCGTGGAGTCACAGAGTGTGCCACGTAAGACAAAACATGCAAAAATTTACCAAAAAAAATTAAGTTCATGGATTAATAGGACCTTAATTTAGTTAAAGTGTATCTCTGAAATTTCGATTATAATCTAAGGGGTACTTGTGCATTTATCCTATTTAGTTTTGACGATAGTTAATGAATGTCTATTTTGAGCAATTTTAAAAGTTTGTAAAAGAAAATGATTTGTGTTTGTGAAGGAAGTTATATTTGCCGTTTTTGTTAGGAAGAATCTTAGATGTACAATTATTGACTATCAGAACTTTTACTTTAATAGTGAGGGTTCGATTCTATGCCTTGTAATCTTCCTTTCGTTTCTCCTTCTCACGCTTCCAAATTATTTTTATTTTTATTAGAAAGTTATCTGTTGTTTTTCTCTTTTTCAGGTGAATTTGGAAAGTAGGAGATACTAGATTGATTCTAGTAGGCGTGGTGAAGGAGAAGTCTATAGATCAATAAATTGTGCAGGGGAGCTTAGCAACTCTGCACAATTAGAAATATTTACTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTTGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATGTAATGCAAAATGGTCGCTTCGAAATGGTAATTAAACATTAGTGATAAGAACTTAGTGAATATTTATCATTTTGATGTCATTACATTAGTTCAAATTTATGCGATTATCAATCTTTACAAAAAAAAAAA</genome_strand>
        <mrna_strand>AATATTTTTAAAAAATAAAATGACTAGTCGTACTTTAGTAATGCTGATATTAGTAATAACGTACAATAGTATTGCGGTGAAAGGAAGCAACGGTCATCCCTGTAGCAGCACATTCTTTTCAGCGTTGATTCAGCTGATACCTTGTAGGGCATCGGTGGTTCCGTTCAGTTCGGTACCACCGAGCGAAGCGTGCTGCGCTTCGATCAAGGCTTTAGGGCAGCCATGTCTCTGTGTTCTTATCAATGGCCCTCCTATTTCTGGTGTTGATCGAAACATGGCCGTACAGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTTGGAAAGTAGGAGATACTAGATTGATTCTAGTAGGCGTGGTGAAGGAGAAGTCTATAGATCAATAAATTGTGCAGGGGAGCTTAGCAACTCTGCACAATTAGAAATATTTACTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTTGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATGTAATGCAAAATGGTCGCTTCGAAATGGTAATTAAACATTAGTGATAAGAACTTAGTGAAT.........................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327932" ref_strand="+" ref_description="SGN-E327932 [cTOC-22-F19]">
      <seq>atatttttaaaaaataaaatgactagtcgtactttagtaatgctgatattagtaataacgtacaatagtattgcggtgaaaggaagcaacggtcatccctgtagcagcacattcttttcagcgttgattcagctgataccttgtagggcatcggtggttccgttcagttcggtaccaccgagcgaagcgtgctgcgcttcgatcaaggctttagggcagccatgtctctgtgttcttatcaatggccctcctatttctggtgttgatcgaaacatggccgtacagcttcctgagaagtgcactgccaactttgaacaatgtgaatttggaaagtaggagatactagattgattctagtaggcgtggtgaaggagaagtctatagatcaataaattgtgcaggggagcttagcaactctgcacaattagaaatatttactaaatcaaattaagtgttcacttaattgttataataatttatttagcttgccttaatatcattgttatagtaataatggccaacattaatattatgtaatgcaaaatggtcgcttcgaaatggtaattaaacattagtgataagaacttagtgaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33127" stop="31206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32827" g_stop="32509" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32508" i_stop="31782" i_length="727">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31781" g_stop="31507" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="594" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31506" i_stop="31450" i_length="57">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31449" g_stop="31439" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="605" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E327932" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32827" e_stop="32509"/>
          <exon e_start="31781" e_stop="31507"/>
          <exon e_start="31449" e_stop="31439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTTTAAAAAATAAAATGACTAGTCGTACTTTAGTAATGCTGATATTAGTAATAACGTACAATAGTATTGCGGTGAAAGGAAGCAACGGTCATCCCTGTAGCAGCACATTCTTTTCAGCGTTGATTCAGCTGATACCTTGTAGGGCATCGGTGGTTCCGTTCAGTTCGGTACCACCGAGCGAAGCGTGCTGCGCTTCGATCAAGGCTTTAGGGCAGCCATGTCTCTGTGTTCTTATCAATGGCCCTCCTATTTCTGGTGTTGATCGAAACATGGCCGTACAGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAATGTAAAAATCTATCCACCTCTCTTTTATCGAACGTTTTCTGCAAAATGTTTTTCGACCAAATGTTATTTCGAAGAAAAAATGACTAGTATAAGAATTAAATAGAAATAATAGTGCAATTTTGAGCTATCGAGAAATTTTTGAATATCTAGTTTGTAAAAATGAATAAGTATCCTTTAGACTATGATCGAAATATCAAAGACACAATTTAACTAAACTAAGGTCCTATTATCCCTGAACTTATTTTTTTTGGTAATTTTGCGCATCTTTTTAGCTTACGATGCACCAAATATCTCCCACGCGCCTCAATTGCGTGGAGTCACAGAGTGTGCCACGTAAGACAAAACATGCAAAAATTTACCAAAAAAAATTAAGTTCATGGATTAATAGGACCTTAATTTAGTTAAAGTGTATCTCTGAAATTTCGATTATAATCTAAGGGGTACTTGTGCATTTATCCTATTTAGTTTTGACGATAGTTAATGAATGTCTATTTTGAGCAATTTTAAAAGTTTGTAAAAGAAAATGATTTGTGTTTGTGAAGGAAGTTATATTTGCCGTTTTTGTTAGGAAGAATCTTAGATGTACAATTATTGACTATCAGAACTTTTACTTTAATAGTGAGGGTTCGATTCTATGCCTTGTAATCTTCCTTTCGTTTCTCCTTCTCACGCTTCCAAATTATTTTTATTTTTATTAGAAAGTTATCTGTTGTTTTTCTCTTTTTCAGGTGAATTTGGAAAGTAGGAGATACTAGATTGATTCTAGTAGGCGTGGTGAAGGAGAAGTCTATAGATCAATAAATTGTGCAGGGGAGCTTAGCAACTCTGCACAATTAGAAATATTTACTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTTGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATGTAATGCAAAATGGTCGCTTCGAAATGGTAATTAAACATTAGTGATAAGAACTTAGTGAATATTTATCATTTTGATGTCATTACATTAGTTCAAATTTATGCGATTATCAATCTTTACAAAAAAAAAAA</genome_strand>
        <mrna_strand>ATATTTTTAAAAAATAAAATGACTAGTCGTACTTTAGTAATGCTGATATTAGTAATAACGTACAATAGTATTGCGGTGAAAGGAAGCAACGGTCATCCCTGTAGCAGCACATTCTTTTCAGCGTTGATTCAGCTGATACCTTGTAGGGCATCGGTGGTTCCGTTCAGTTCGGTACCACCGAGCGAAGCGTGCTGCGCTTCGATCAAGGCTTTAGGGCAGCCATGTCTCTGTGTTCTTATCAATGGCCCTCCTATTTCTGGTGTTGATCGAAACATGGCCGTACAGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTTGGAAAGTAGGAGATACTAGATTGATTCTAGTAGGCGTGGTGAAGGAGAAGTCTATAGATCAATAAATTGTGCAGGGGAGCTTAGCAACTCTGCACAATTAGAAATATTTACTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTTGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATGTAATGCAAAATGGTCGCTTCGAAATGGTAATTAAACATTAGTGATAAGAACTTAGTGAAT.........................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745007" ref_strand="+" ref_description="SGN-E745007 [GI|415832]">
      <seq>aaaaaaaaaaaaactatagtatcaattcaaaaaatatttttaaaaaataaaatgactagtcgtactttagtaatgctgatattagtaataacgtacaatagtattgcggtgaaaggaagcaacggtcatccctgtagcagcacattcttttcagcgttgattcagctgataccttgtagggcatcggtggttccgttcagttcggtaccaccgagcgaagcgtgctgcgcttcgatcaaggctttagggcagccatgtctctgtgttcttatcaatggccctcctatttctggtgttgatcgaaacatggccgtacagcttcctgagaagtgcactgccaactttgaacaatgtgaatttggaaagtaggagatactagattgattctagtaggcgtggtgaaggagaagtctatagatcaataaattgtgcaggggagcttagcaactctgcacaattagaaatatttactaaatcaaattaagtgttcacttaattgttataataatttatttagcttgccttaatatcattgttatagtaataatggccaacattaatattatgtaatgcaaaatggtcgcttcgaaatggtaattaaacattagtgataagaacttagtgaatatttatcattttgatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33152" stop="31189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32850" g_stop="32509" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="352" r_length="342" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32508" i_stop="31782" i_length="727">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31781" g_stop="31489" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="645" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E745007" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32850" e_stop="32509"/>
          <exon e_start="31781" e_stop="31489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTATAGTATCAATTCAAAAAATATTTTTAAAAAATAAAATGACTAGTCGTACTTTAGTAATGCTGATATTAGTAATAACGTACAATAGTATTGCGGTGAAAGGAAGCAACGGTCATCCCTGTAGCAGCACATTCTTTTCAGCGTTGATTCAGCTGATACCTTGTAGGGCATCGGTGGTTCCGTTCAGTTCGGTACCACCGAGCGAAGCGTGCTGCGCTTCGATCAAGGCTTTAGGGCAGCCATGTCTCTGTGTTCTTATCAATGGCCCTCCTATTTCTGGTGTTGATCGAAACATGGCCGTACAGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAATGTAAAAATCTATCCACCTCTCTTTTATCGAACGTTTTCTGCAAAATGTTTTTCGACCAAATGTTATTTCGAAGAAAAAATGACTAGTATAAGAATTAAATAGAAATAATAGTGCAATTTTGAGCTATCGAGAAATTTTTGAATATCTAGTTTGTAAAAATGAATAAGTATCCTTTAGACTATGATCGAAATATCAAAGACACAATTTAACTAAACTAAGGTCCTATTATCCCTGAACTTATTTTTTTTGGTAATTTTGCGCATCTTTTTAGCTTACGATGCACCAAATATCTCCCACGCGCCTCAATTGCGTGGAGTCACAGAGTGTGCCACGTAAGACAAAACATGCAAAAATTTACCAAAAAAAATTAAGTTCATGGATTAATAGGACCTTAATTTAGTTAAAGTGTATCTCTGAAATTTCGATTATAATCTAAGGGGTACTTGTGCATTTATCCTATTTAGTTTTGACGATAGTTAATGAATGTCTATTTTGAGCAATTTTAAAAGTTTGTAAAAGAAAATGATTTGTGTTTGTGAAGGAAGTTATATTTGCCGTTTTTGTTAGGAAGAATCTTAGATGTACAATTATTGACTATCAGAACTTTTACTTTAATAGTGAGGGTTCGATTCTATGCCTTGTAATCTTCCTTTCGTTTCTCCTTCTCACGCTTCCAAATTATTTTTATTTTTATTAGAAAGTTATCTGTTGTTTTTCTCTTTTTCAGGTGAATTTGGAAAGTAGGAGATACTAGATTGATTCTAGTAGGCGTGGTGAAGGAGAAGTCTATAGATCAATAAATTGTGCAGGGGAGCTTAGCAACTCTGCACAATTAGAAATATTTACTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTTGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATGTAATGCAAAATGGTCGCTTCGAAATGGTAATTAAACATTAGTGATAAGAACTTAGTGAATATTTATCATTTTGATGTC</genome_strand>
        <mrna_strand>AAACTATAGTATCAATTCAAAAAATATTTTTAAAAAATAAAATGACTAGTCGTACTTTAGTAATGCTGATATTAGTAATAACGTACAATAGTATTGCGGTGAAAGGAAGCAACGGTCATCCCTGTAGCAGCACATTCTTTTCAGCGTTGATTCAGCTGATACCTTGTAGGGCATCGGTGGTTCCGTTCAGTTCGGTACCACCGAGCGAAGCGTGCTGCGCTTCGATCAAGGCTTTAGGGCAGCCATGTCTCTGTGTTCTTATCAATGGCCCTCCTATTTCTGGTGTTGATCGAAACATGGCCGTACAGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTTGGAAAGTAGGAGATACTAGATTGATTCTAGTAGGCGTGGTGAAGGAGAAGTCTATAGATCAATAAATTGTGCAGGGGAGCTTAGCAACTCTGCACAATTAGAAATATTTACTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTTGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATGTAATGCAAAATGGTCGCTTCGAAATGGTAATTAAACATTAGTGATAAGAACTTAGTGAATATTTATCATTTTGATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321789" ref_strand="+" ref_description="SGN-E321789 [cTOB-25-H5]">
      <seq>aaaaatatttttaaaaaataaaatgactagtcgtactttattaatgctgatattagtaataacgtacaatagtattgcggtgaaaggaagcaacggtcatccctgtagcagcacattcttttcagcgttgattcagctgataccttgtagggcatcggtggttccgttcagttcggtaccaccgagcgaagcgtgctgcgcttcgatcaaggctttagggcagccatgtctctgtgttcttatcaatggccctcctatttctggtgttgatcgaaacatggccgtacagcttcctgagaagtgcactgccaactttgaacaatgtgaatttggaaagtaggagatactagattgattctagtaggcgtggtgaaggagaagtctatagatcaataaattgtgcaggggagcttagcaactctgcacaattagaaatatttactaaatcaaattaagtgttcacttaattgttataataatttatttagcttgccttaatatcattgttatagtaataatggccaacattaatattatgtaatgcaaaatggtcgcttcgaaatggtaattaaacattagtgataagaacttagtgaatatttatcattttgatgtcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33131" stop="31183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32831" g_stop="32509" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32508" i_stop="31782" i_length="727">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31781" g_stop="31489" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="616" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="617" polyA_stop="628"/>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E321789" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32831" e_stop="32509"/>
          <exon e_start="31781" e_stop="31489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATATTTTTAAAAAATAAAATGACTAGTCGTACTTTAGTAATGCTGATATTAGTAATAACGTACAATAGTATTGCGGTGAAAGGAAGCAACGGTCATCCCTGTAGCAGCACATTCTTTTCAGCGTTGATTCAGCTGATACCTTGTAGGGCATCGGTGGTTCCGTTCAGTTCGGTACCACCGAGCGAAGCGTGCTGCGCTTCGATCAAGGCTTTAGGGCAGCCATGTCTCTGTGTTCTTATCAATGGCCCTCCTATTTCTGGTGTTGATCGAAACATGGCCGTACAGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAATGTAAAAATCTATCCACCTCTCTTTTATCGAACGTTTTCTGCAAAATGTTTTTCGACCAAATGTTATTTCGAAGAAAAAATGACTAGTATAAGAATTAAATAGAAATAATAGTGCAATTTTGAGCTATCGAGAAATTTTTGAATATCTAGTTTGTAAAAATGAATAAGTATCCTTTAGACTATGATCGAAATATCAAAGACACAATTTAACTAAACTAAGGTCCTATTATCCCTGAACTTATTTTTTTTGGTAATTTTGCGCATCTTTTTAGCTTACGATGCACCAAATATCTCCCACGCGCCTCAATTGCGTGGAGTCACAGAGTGTGCCACGTAAGACAAAACATGCAAAAATTTACCAAAAAAAATTAAGTTCATGGATTAATAGGACCTTAATTTAGTTAAAGTGTATCTCTGAAATTTCGATTATAATCTAAGGGGTACTTGTGCATTTATCCTATTTAGTTTTGACGATAGTTAATGAATGTCTATTTTGAGCAATTTTAAAAGTTTGTAAAAGAAAATGATTTGTGTTTGTGAAGGAAGTTATATTTGCCGTTTTTGTTAGGAAGAATCTTAGATGTACAATTATTGACTATCAGAACTTTTACTTTAATAGTGAGGGTTCGATTCTATGCCTTGTAATCTTCCTTTCGTTTCTCCTTCTCACGCTTCCAAATTATTTTTATTTTTATTAGAAAGTTATCTGTTGTTTTTCTCTTTTTCAGGTGAATTTGGAAAGTAGGAGATACTAGATTGATTCTAGTAGGCGTGGTGAAGGAGAAGTCTATAGATCAATAAATTGTGCAGGGGAGCTTAGCAACTCTGCACAATTAGAAATATTTACTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTTGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATGTAATGCAAAATGGTCGCTTCGAAATGGTAATTAAACATTAGTGATAAGAACTTAGTGAATATTTATCATTTTGATGTC</genome_strand>
        <mrna_strand>AAAAATATTTTTAAAAAATAAAATGACTAGTCGTACTTTATTAATGCTGATATTAGTAATAACGTACAATAGTATTGCGGTGAAAGGAAGCAACGGTCATCCCTGTAGCAGCACATTCTTTTCAGCGTTGATTCAGCTGATACCTTGTAGGGCATCGGTGGTTCCGTTCAGTTCGGTACCACCGAGCGAAGCGTGCTGCGCTTCGATCAAGGCTTTAGGGCAGCCATGTCTCTGTGTTCTTATCAATGGCCCTCCTATTTCTGGTGTTGATCGAAACATGGCCGTACAGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTTGGAAAGTAGGAGATACTAGATTGATTCTAGTAGGCGTGGTGAAGGAGAAGTCTATAGATCAATAAATTGTGCAGGGGAGCTTAGCAACTCTGCACAATTAGAAATATTTACTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTTGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATGTAATGCAAAATGGTCGCTTCGAAATGGTAATTAAACATTAGTGATAAGAACTTAGTGAATATTTATCATTTTGATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320239" ref_strand="+" ref_description="SGN-E320239 [cTOB-21-K22]">
      <seq>aacggtcatccctgtagcagcacattcttttcagcgttgattcagctgataccttgtagggcatcggtggttccgttcagttcggtaccaccgagcgaagcgtgctgcgcttcgatcaaggctttagggcagccatgtctctgtgttcttatcaatggccctcctatttctggtgttgatcgaaacatggccgtacagcttcctgagaagtgcactgccaactttgaacaatgtgaatttggaaagtaggagatactagattgattctagtaggcgtggtgaaggagaagtctatagatcaataaattgtgcaggggagcttagcaactctgcacaattagaaatatttactaaatcaaattaagtgttcacttaattgttataataatttatttagcttgccttaatatcattgttatagtaataatggccaacattaatattatgtaatgcaaaatggtcgcttcgaaatggtaattaaacattagtgataagaacttagtgaatatttataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33040" stop="31199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32740" g_stop="32509" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32508" i_stop="31782" i_length="727">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31781" g_stop="31503" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="511" r_length="279" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="512" polyA_stop="523"/>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E320239" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32740" e_stop="32509"/>
          <exon e_start="31781" e_stop="31503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGTCATCCCTGTAGCAGCACATTCTTTTCAGCGTTGATTCAGCTGATACCTTGTAGGGCATCGGTGGTTCCGTTCAGTTCGGTACCACCGAGCGAAGCGTGCTGCGCTTCGATCAAGGCTTTAGGGCAGCCATGTCTCTGTGTTCTTATCAATGGCCCTCCTATTTCTGGTGTTGATCGAAACATGGCCGTACAGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAATGTAAAAATCTATCCACCTCTCTTTTATCGAACGTTTTCTGCAAAATGTTTTTCGACCAAATGTTATTTCGAAGAAAAAATGACTAGTATAAGAATTAAATAGAAATAATAGTGCAATTTTGAGCTATCGAGAAATTTTTGAATATCTAGTTTGTAAAAATGAATAAGTATCCTTTAGACTATGATCGAAATATCAAAGACACAATTTAACTAAACTAAGGTCCTATTATCCCTGAACTTATTTTTTTTGGTAATTTTGCGCATCTTTTTAGCTTACGATGCACCAAATATCTCCCACGCGCCTCAATTGCGTGGAGTCACAGAGTGTGCCACGTAAGACAAAACATGCAAAAATTTACCAAAAAAAATTAAGTTCATGGATTAATAGGACCTTAATTTAGTTAAAGTGTATCTCTGAAATTTCGATTATAATCTAAGGGGTACTTGTGCATTTATCCTATTTAGTTTTGACGATAGTTAATGAATGTCTATTTTGAGCAATTTTAAAAGTTTGTAAAAGAAAATGATTTGTGTTTGTGAAGGAAGTTATATTTGCCGTTTTTGTTAGGAAGAATCTTAGATGTACAATTATTGACTATCAGAACTTTTACTTTAATAGTGAGGGTTCGATTCTATGCCTTGTAATCTTCCTTTCGTTTCTCCTTCTCACGCTTCCAAATTATTTTTATTTTTATTAGAAAGTTATCTGTTGTTTTTCTCTTTTTCAGGTGAATTTGGAAAGTAGGAGATACTAGATTGATTCTAGTAGGCGTGGTGAAGGAGAAGTCTATAGATCAATAAATTGTGCAGGGGAGCTTAGCAACTCTGCACAATTAGAAATATTTACTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTTGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATGTAATGCAAAATGGTCGCTTCGAAATGGTAATTAAACATTAGTGATAAGAACTTAGTGAATATTT</genome_strand>
        <mrna_strand>AACGGTCATCCCTGTAGCAGCACATTCTTTTCAGCGTTGATTCAGCTGATACCTTGTAGGGCATCGGTGGTTCCGTTCAGTTCGGTACCACCGAGCGAAGCGTGCTGCGCTTCGATCAAGGCTTTAGGGCAGCCATGTCTCTGTGTTCTTATCAATGGCCCTCCTATTTCTGGTGTTGATCGAAACATGGCCGTACAGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTTGGAAAGTAGGAGATACTAGATTGATTCTAGTAGGCGTGGTGAAGGAGAAGTCTATAGATCAATAAATTGTGCAGGGGAGCTTAGCAACTCTGCACAATTAGAAATATTTACTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTTGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATGTAATGCAAAATGGTCGCTTCGAAATGGTAATTAAACATTAGTGATAAGAACTTAGTGAATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315038" ref_strand="+" ref_description="SGN-E315038 [cTOB-4-M4]">
      <seq>aaaaaatatttttaaaaaataaaatgactagtcgtactttagtaatgctgatattagtaataacgtacaatagtattgcggtgaaaggaagcaacggtcatccctgtagcagcacattcttttcagcgttgattcagctgataccttgtagggcatcggtggttccgttcagttcggtaccaccgagcgaagcgtgctgcgcttcgatcaaagctttagggcagccatgtctctgtgttcttatcaatggccctcctatttctggtgttgatcgaaacatggccgtacagcttcctgagaagtgcactgccaactttgaacaatgtgaatttggaaagtacgagatactacattgattctagtaagcgtggtgaaggagaagtctatagatcaataaattgtgcaggggagcttatcaactctgcacaattagaaatatttactaaatcaaattaagtgttcacttaattgttataataatttatttagctagccttaatatcattgttatagtaataatggccaacattaatattatgtaatgcaaaatggtcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33132" stop="31250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32832" g_stop="32509" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32508" i_stop="31782" i_length="727">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31781" g_stop="31550" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="556" r_length="232" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E315038" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32832" e_stop="32509"/>
          <exon e_start="31781" e_stop="31550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATATTTTTAAAAAATAAAATGACTAGTCGTACTTTAGTAATGCTGATATTAGTAATAACGTACAATAGTATTGCGGTGAAAGGAAGCAACGGTCATCCCTGTAGCAGCACATTCTTTTCAGCGTTGATTCAGCTGATACCTTGTAGGGCATCGGTGGTTCCGTTCAGTTCGGTACCACCGAGCGAAGCGTGCTGCGCTTCGATCAAGGCTTTAGGGCAGCCATGTCTCTGTGTTCTTATCAATGGCCCTCCTATTTCTGGTGTTGATCGAAACATGGCCGTACAGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAATGTAAAAATCTATCCACCTCTCTTTTATCGAACGTTTTCTGCAAAATGTTTTTCGACCAAATGTTATTTCGAAGAAAAAATGACTAGTATAAGAATTAAATAGAAATAATAGTGCAATTTTGAGCTATCGAGAAATTTTTGAATATCTAGTTTGTAAAAATGAATAAGTATCCTTTAGACTATGATCGAAATATCAAAGACACAATTTAACTAAACTAAGGTCCTATTATCCCTGAACTTATTTTTTTTGGTAATTTTGCGCATCTTTTTAGCTTACGATGCACCAAATATCTCCCACGCGCCTCAATTGCGTGGAGTCACAGAGTGTGCCACGTAAGACAAAACATGCAAAAATTTACCAAAAAAAATTAAGTTCATGGATTAATAGGACCTTAATTTAGTTAAAGTGTATCTCTGAAATTTCGATTATAATCTAAGGGGTACTTGTGCATTTATCCTATTTAGTTTTGACGATAGTTAATGAATGTCTATTTTGAGCAATTTTAAAAGTTTGTAAAAGAAAATGATTTGTGTTTGTGAAGGAAGTTATATTTGCCGTTTTTGTTAGGAAGAATCTTAGATGTACAATTATTGACTATCAGAACTTTTACTTTAATAGTGAGGGTTCGATTCTATGCCTTGTAATCTTCCTTTCGTTTCTCCTTCTCACGCTTCCAAATTATTTTTATTTTTATTAGAAAGTTATCTGTTGTTTTTCTCTTTTTCAGGTGAATTTGGAAAGTAGGAGATACTAGATTGATTCTAGTAGGCGTGGTGAAGGAGAAGTCTATAGATCAATAAATTGTGCAGGGGAGCTTAGCAACTCTGCACAATTAGAAATATTTACTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTTGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATGTAATGCAAAATGGTCGC</genome_strand>
        <mrna_strand>AAAAAATATTTTTAAAAAATAAAATGACTAGTCGTACTTTAGTAATGCTGATATTAGTAATAACGTACAATAGTATTGCGGTGAAAGGAAGCAACGGTCATCCCTGTAGCAGCACATTCTTTTCAGCGTTGATTCAGCTGATACCTTGTAGGGCATCGGTGGTTCCGTTCAGTTCGGTACCACCGAGCGAAGCGTGCTGCGCTTCGATCAAAGCTTTAGGGCAGCCATGTCTCTGTGTTCTTATCAATGGCCCTCCTATTTCTGGTGTTGATCGAAACATGGCCGTACAGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTTGGAAAGTACGAGATACTACATTGATTCTAGTAAGCGTGGTGAAGGAGAAGTCTATAGATCAATAAATTGTGCAGGGGAGCTTATCAACTCTGCACAATTAGAAATATTTACTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTAGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATGTAATGCAAAATGGTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390227" ref_strand="+" ref_description="SGN-E390227 [TUS-39-N24]">
      <seq>caaaaaatatttttaaaaaataaaatgactagtcgtactttagtaatgctgatattagtaataacgtacaatagtattgcggtgaaaggaagcaacggtcatccctgtagcagcacattcttttcagcgttgattcagctgataccttgtagggcatcggtggttccgttcagttcggtaccaccgagcgaagcgtgctgcgcttcgatcaaggctttagggcagccatgtctctgtgttcttatcaatggccctcctatttctggtgttgatcgaaacatggccgtacagcttcctgagaagtgcactgccaactttgaacaatgtgaatttggaaagtaggagatactacattgattctagtaggcgtggtgaaggagaagtctatagatcaataaattgtgcaggggagcttagcaactctgcacaattagaaatatttactagatcaaattaagtgttcacttaattgttatgataatttatttagcttgccttaatatcattgttatagtaataatggccaacattaatattatgtaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33133" stop="31262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32833" g_stop="32509" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32508" i_stop="31782" i_length="727">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31781" g_stop="31562" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="545" r_length="220" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E390227" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32833" e_stop="32509"/>
          <exon e_start="31781" e_stop="31562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAATATTTTTAAAAAATAAAATGACTAGTCGTACTTTAGTAATGCTGATATTAGTAATAACGTACAATAGTATTGCGGTGAAAGGAAGCAACGGTCATCCCTGTAGCAGCACATTCTTTTCAGCGTTGATTCAGCTGATACCTTGTAGGGCATCGGTGGTTCCGTTCAGTTCGGTACCACCGAGCGAAGCGTGCTGCGCTTCGATCAAGGCTTTAGGGCAGCCATGTCTCTGTGTTCTTATCAATGGCCCTCCTATTTCTGGTGTTGATCGAAACATGGCCGTACAGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAATGTAAAAATCTATCCACCTCTCTTTTATCGAACGTTTTCTGCAAAATGTTTTTCGACCAAATGTTATTTCGAAGAAAAAATGACTAGTATAAGAATTAAATAGAAATAATAGTGCAATTTTGAGCTATCGAGAAATTTTTGAATATCTAGTTTGTAAAAATGAATAAGTATCCTTTAGACTATGATCGAAATATCAAAGACACAATTTAACTAAACTAAGGTCCTATTATCCCTGAACTTATTTTTTTTGGTAATTTTGCGCATCTTTTTAGCTTACGATGCACCAAATATCTCCCACGCGCCTCAATTGCGTGGAGTCACAGAGTGTGCCACGTAAGACAAAACATGCAAAAATTTACCAAAAAAAATTAAGTTCATGGATTAATAGGACCTTAATTTAGTTAAAGTGTATCTCTGAAATTTCGATTATAATCTAAGGGGTACTTGTGCATTTATCCTATTTAGTTTTGACGATAGTTAATGAATGTCTATTTTGAGCAATTTTAAAAGTTTGTAAAAGAAAATGATTTGTGTTTGTGAAGGAAGTTATATTTGCCGTTTTTGTTAGGAAGAATCTTAGATGTACAATTATTGACTATCAGAACTTTTACTTTAATAGTGAGGGTTCGATTCTATGCCTTGTAATCTTCCTTTCGTTTCTCCTTCTCACGCTTCCAAATTATTTTTATTTTTATTAGAAAGTTATCTGTTGTTTTTCTCTTTTTCAGGTGAATTTGGAAAGTAGGAGATACTAGATTGATTCTAGTAGGCGTGGTGAAGGAGAAGTCTATAGATCAATAAATTGTGCAGGGGAGCTTAGCAACTCTGCACAATTAGAAATATTTACTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTTGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATGTAATG</genome_strand>
        <mrna_strand>CAAAAAATATTTTTAAAAAATAAAATGACTAGTCGTACTTTAGTAATGCTGATATTAGTAATAACGTACAATAGTATTGCGGTGAAAGGAAGCAACGGTCATCCCTGTAGCAGCACATTCTTTTCAGCGTTGATTCAGCTGATACCTTGTAGGGCATCGGTGGTTCCGTTCAGTTCGGTACCACCGAGCGAAGCGTGCTGCGCTTCGATCAAGGCTTTAGGGCAGCCATGTCTCTGTGTTCTTATCAATGGCCCTCCTATTTCTGGTGTTGATCGAAACATGGCCGTACAGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTTGGAAAGTAGGAGATACTACATTGATTCTAGTAGGCGTGGTGAAGGAGAAGTCTATAGATCAATAAATTGTGCAGGGGAGCTTAGCAACTCTGCACAATTAGAAATATTTACTAGATCAAATTAAGTGTTCACTTAATTGTTATGATAATTTATTTAGCTTGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATGTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320697" ref_strand="+" ref_description="SGN-E320697 [cTOB-27-D15]">
      <seq>aataacgtacaatagtattgcggtgaaaggaagcaacggtcatccctgtagcagcacattcttttcagcgttgattcagctgataccttgtagggcatcggtggttccgttcagttcggtaccaccgagcgaagcgtgctgcgcttcgatcaaggctttatggcagccatgtctctgtgttcttatcaatggccctcctatttctggtgttgatcgaaacatggccgtacagcttcctgagaagtgcactgccaactttgaacaatgtgaatttggaaagtaggagatactagattgattctagtaggcgtggggaaggagaagtctatagatcaataaattgtgcaggggagcttagcaactctgcacaattagaaatatttactaaatcaaattaagtgttcacttaattgttataataatttatttagcttgccttaatatcattgttatagtaataatggccaacattaatattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33074" stop="31267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32774" g_stop="32509" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32508" i_stop="31782" i_length="727">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31781" g_stop="31567" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="481" r_length="215" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E320697" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32774" e_stop="32509"/>
          <exon e_start="31781" e_stop="31567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAACGTACAATAGTATTGCGGTGAAAGGAAGCAACGGTCATCCCTGTAGCAGCACATTCTTTTCAGCGTTGATTCAGCTGATACCTTGTAGGGCATCGGTGGTTCCGTTCAGTTCGGTACCACCGAGCGAAGCGTGCTGCGCTTCGATCAAGGCTTTAGGGCAGCCATGTCTCTGTGTTCTTATCAATGGCCCTCCTATTTCTGGTGTTGATCGAAACATGGCCGTACAGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAATGTAAAAATCTATCCACCTCTCTTTTATCGAACGTTTTCTGCAAAATGTTTTTCGACCAAATGTTATTTCGAAGAAAAAATGACTAGTATAAGAATTAAATAGAAATAATAGTGCAATTTTGAGCTATCGAGAAATTTTTGAATATCTAGTTTGTAAAAATGAATAAGTATCCTTTAGACTATGATCGAAATATCAAAGACACAATTTAACTAAACTAAGGTCCTATTATCCCTGAACTTATTTTTTTTGGTAATTTTGCGCATCTTTTTAGCTTACGATGCACCAAATATCTCCCACGCGCCTCAATTGCGTGGAGTCACAGAGTGTGCCACGTAAGACAAAACATGCAAAAATTTACCAAAAAAAATTAAGTTCATGGATTAATAGGACCTTAATTTAGTTAAAGTGTATCTCTGAAATTTCGATTATAATCTAAGGGGTACTTGTGCATTTATCCTATTTAGTTTTGACGATAGTTAATGAATGTCTATTTTGAGCAATTTTAAAAGTTTGTAAAAGAAAATGATTTGTGTTTGTGAAGGAAGTTATATTTGCCGTTTTTGTTAGGAAGAATCTTAGATGTACAATTATTGACTATCAGAACTTTTACTTTAATAGTGAGGGTTCGATTCTATGCCTTGTAATCTTCCTTTCGTTTCTCCTTCTCACGCTTCCAAATTATTTTTATTTTTATTAGAAAGTTATCTGTTGTTTTTCTCTTTTTCAGGTGAATTTGGAAAGTAGGAGATACTAGATTGATTCTAGTAGGCGTGGTGAAGGAGAAGTCTATAGATCAATAAATTGTGCAGGGGAGCTTAGCAACTCTGCACAATTAGAAATATTTACTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTTGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATG</genome_strand>
        <mrna_strand>AATAACGTACAATAGTATTGCGGTGAAAGGAAGCAACGGTCATCCCTGTAGCAGCACATTCTTTTCAGCGTTGATTCAGCTGATACCTTGTAGGGCATCGGTGGTTCCGTTCAGTTCGGTACCACCGAGCGAAGCGTGCTGCGCTTCGATCAAGGCTTTATGGCAGCCATGTCTCTGTGTTCTTATCAATGGCCCTCCTATTTCTGGTGTTGATCGAAACATGGCCGTACAGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTTGGAAAGTAGGAGATACTAGATTGATTCTAGTAGGCGTGGGGAAGGAGAAGTCTATAGATCAATAAATTGTGCAGGGGAGCTTAGCAACTCTGCACAATTAGAAATATTTACTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTTGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E618695" ref_strand="-" ref_description="SGN-E618695 [69376]">
      <seq>tagtagtccaaaattttaaaaatatgagcaaaaacatgatgactagtcgtactttagtaatgctaatattagtaataacatacagtatcgcggtgaaaggaagcaatggtcatccttgtagcagcacattcttttcagcgttgattcagctgataccttgtagggcatcggtggttccgttcagttcggtaccaccgagcgaagcgtgctgcgcttccatcaaggcattagggcagccgtgtctgtgtgttcttatcaatggccctcctatttctggtgttgatcgaagcatggccgtacagcttcctgataagtgcactgctaactttgaacaatgtgaatttggaaagtaggaatactagattgattctagtaggtatggtgaaggaagaagtctagatcaataaatatgtgcaggggagcttagcaactctgaacaattagaaatatgtactaaatcaaattaagtgtttacttaattgttataatagtttatttagctcgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33118" stop="31310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32809" g_stop="32509" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="336" r_length="298" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32508" i_stop="31782" i_length="727">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31781" g_stop="31610" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="507" r_length="171" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E618695" ref_strand="-">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E618695" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32809" e_stop="32509"/>
          <exon e_start="31781" e_stop="31610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACTAGTCGTACTTTAGTAATGCTGATATTAGTAATAACGTACAATAGTATTGCGGTGAAAGGAAGCAACGGTCATCCCTGTAGCAGCACATTCTTTTCAGCGTTGATTCAGCTGATACCTTGTAGGGCATCGGTGGTTCCGTTCAGTTCGGTACCACCGAGCGAAGCGTGCTGCGCTTCGATCAAGGCTTTAGGGCAGCCATGTCTCTGTGTTCTTATCAATGGCCCTCCTATTTCTGGTGTTGATCGAAACATGGCCGTACAGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAATGTAAAAATCTATCCACCTCTCTTTTATCGAACGTTTTCTGCAAAATGTTTTTCGACCAAATGTTATTTCGAAGAAAAAATGACTAGTATAAGAATTAAATAGAAATAATAGTGCAATTTTGAGCTATCGAGAAATTTTTGAATATCTAGTTTGTAAAAATGAATAAGTATCCTTTAGACTATGATCGAAATATCAAAGACACAATTTAACTAAACTAAGGTCCTATTATCCCTGAACTTATTTTTTTTGGTAATTTTGCGCATCTTTTTAGCTTACGATGCACCAAATATCTCCCACGCGCCTCAATTGCGTGGAGTCACAGAGTGTGCCACGTAAGACAAAACATGCAAAAATTTACCAAAAAAAATTAAGTTCATGGATTAATAGGACCTTAATTTAGTTAAAGTGTATCTCTGAAATTTCGATTATAATCTAAGGGGTACTTGTGCATTTATCCTATTTAGTTTTGACGATAGTTAATGAATGTCTATTTTGAGCAATTTTAAAAGTTTGTAAAAGAAAATGATTTGTGTTTGTGAAGGAAGTTATATTTGCCGTTTTTGTTAGGAAGAATCTTAGATGTACAATTATTGACTATCAGAACTTTTACTTTAATAGTGAGGGTTCGATTCTATGCCTTGTAATCTTCCTTTCGTTTCTCCTTCTCACGCTTCCAAATTATTTTTATTTTTATTAGAAAGTTATCTGTTGTTTTTCTCTTTTTCAGGTGAATTTGGAAAGTAGGAGATACTAGATTGATTCTAGTAGGCGTGGTGAAGG-AGAAGTCTATAGATCAATAAAT-TGTGCAGGGGAGCTTAGCAACTCTGCACAATTAGAAATATTTACTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTTGCCT</genome_strand>
        <mrna_strand>ATGACTAGTCGTACTTTAGTAATGCTAATATTAGTAATAACATAC---AGTATCGCGGTGAAAGGAAGCAATGGTCATCCTTGTAGCAGCACATTCTTTTCAGCGTTGATTCAGCTGATACCTTGTAGGGCATCGGTGGTTCCGTTCAGTTCGGTACCACCGAGCGAAGCGTGCTGCGCTTCCATCAAGGCATTAGGGCAGCCGTGTCTGTGTGTTCTTATCAATGGCCCTCCTATTTCTGGTGTTGATCGAAGCATGGCCGTACAGCTTCCTGATAAGTGCACTGCTAACTTTGAACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTTGGAAAGTAGGA-ATACTAGATTGATTCTAGTAGGTATGGTGAAGGAAGAAGTC--TAGATCAATAAATATGTGCAGGGGAGCTTAGCAACTCTGAACAATTAGAAATATGTACTAAATCAAATTAAGTGTTTACTTAATTGTTATAATAGTTTATTTAGCTCGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733239" ref_strand="+" ref_description="SGN-E733239 [LB04BD07]">
      <seq>cgctaactcgagttttcatcagtaaaaagcaaaatggcccgtaccaagcagactgctcgcaaatccactggtggaaaggcaccaaggaagcagctagctaccaaggccgcaagaaagtcagctccggctaccggaggagtgaagaagcctcaccgtttcaggccaggaactgtagctttaagggaaatcaggaagtaccagaagtctactgagttgttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgttggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattagggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtaggtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttttaatctaagatcttgcccttacgtcggtactgatgtattccaatgattaacgattgaagcaatacacagtgtttcttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33553" stop="34822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33849" g_stop="34521" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="674" polyA_stop="686"/>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E733239" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33849" e_stop="34521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAACTCGAGTTTTCATCAGTAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTTG</genome_strand>
        <mrna_strand>CGCTAACTCGAGTTTTCATCAGTAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347484" ref_strand="+" ref_description="SGN-E347484 [cTOF-33-F6]">
      <seq>gaactcgagttttcatcagtaaaaagcaaaatggcccgtaccaagcagactgctcgcaaatccactggtggaaaggcaccaaggaagcagctagctaccaaggccgcaagaaagtcagctccggctaccggaggagtgaagaagcctcaccgtttcaggccaggaactgtagctttaagggaaatcaggaagtaccagaagtctactgagttgttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgttggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattagggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtaggtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttttaatctaagatcttgcccttacgtcggtactgatgtattccaatgattaacgattgaagcatacacagtgtttcttgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33552" stop="34822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33852" g_stop="34529" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E347484" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33852" e_stop="34529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTCGAGTTTTCATCAGTAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTTGATTCGAGT</genome_strand>
        <mrna_strand>GAACTCGAGTTTTCATCAGTAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGC-ATACACAGTGTTTCTTGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343151" ref_strand="+" ref_description="SGN-E343151 [cTOF-17-O6]">
      <seq>tcgagttttcatcagtaaaaagcaaaatggcccgtaccaagcagactgctcgcaaatccactggtggaaaggcaccaaggaagcagctagctaccaaggccgcaagaaagtcagctccggctaccggaggagtgaagaagcctcaccgtttcaggccaggaactgtagctttaagggaaatcaggaagtaccagaagtctactgagttgttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgttggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattagggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtaggtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttttaatctaagatcttgcccttacgtcggtactgatgtattccaatgattaacgattgaagcatacacagtgtttcttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33556" stop="34823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33856" g_stop="34523" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E343151" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33856" e_stop="34523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGTTTTCATCAGTAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTTGAT</genome_strand>
        <mrna_strand>TCGAGTTTTCATCAGTAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGC-ATACACAGTGTTTCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348209" ref_strand="+" ref_description="SGN-E348209 [cTOF-27-E17]">
      <seq>tcgagttttcatcagtaaaaagcaaaatggcccgtaccaagcagactgctcgcaaatccactggtggaaaggcaccaaggaagcagctagctaccaaggccgcaagaaagtcagctccggctaccggaggagtgaagaagcctcaccgtttcaggccaggaactgtagctttaagggaaatcaggaagtaccagaagtctactgagttgttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttaccccgttggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattagggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtangtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttttaatctaagatcttgccctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33556" stop="34764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33856" g_stop="34464" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E348209" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33856" e_stop="34464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGTTTTCATCAGTAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTA</genome_strand>
        <mrna_strand>TCGAGTTTTCATCAGTAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCCCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTANGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286376" ref_strand="+" ref_description="SGN-E286376 [cLES-11-H23]">
      <seq>tcgagttttcatcagtaaaaagcaaaatggcccgtaccaagcagactgctcgcaaatccactggtggaaaggcaccaaggaagcagctagctaccaaggccgcaagaaagtcagctccggctaccggaggagtgaagaagcctcaccgtttcaggccaggaactgtagctttaagggaaatcaggaagtaccagaagtctactgagttgttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgttggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattagggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtaggtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33556" stop="62825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33856" g_stop="34458" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E286376" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33856" e_stop="34458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGTTTTCATCAGTAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTG</genome_strand>
        <mrna_strand>TCGAGTTTTCATCAGTAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318576" ref_strand="+" ref_description="SGN-E318576 [cTOB-9-K3]">
      <seq>gcgagttttcatcagtaaaaagcaaaatggcccgtaccaagcagactgctcgcaaatccactggtggaaaggcaccaaggaagcagctagctaccaaagccgcaagaaagtcagctccggctaccggaggagtgaagaagcctcaccgtttcagagccaggaactgtagctttaagggaaatcaggaagtaccagaagtctactgagttgttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaagatttcaaaacagatctgaggtttcagagcagtgctgaggctgctctacaagaggctgctgaggcttacctcgctggtctctttgaagatactaatctctgagcaattcacgccaagagggtcactatcatgcccaaagatattcagctcgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattatggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtaggagtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33557" stop="34743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33856" g_stop="34443" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E318576" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33856" e_stop="34443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGTTTTCATCAGTAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAG-GCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTT</genome_strand>
        <mrna_strand>GCGAGTTTTCATCAGTAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAAGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGAGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAAGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGAGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGCTGGTCTCTTTGAAGATACTAATCTCTGAGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTCGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTATGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGAGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543907" ref_strand="+" ref_description="SGN-E543907 [TUS-65-P12](-)">
      <seq>gagttttcatcagtaaaaagcaaaatggcccgtaccaagcagactgctcgcaaatccactggtggaaaggcaccaaggaagcagctagctaccaaggccgcaagaaagtcagctccggctaccggaggagtgaagaagcctcaccgtttcaggccaggaactgtagctttaagggaaatcaggaagtaccagaagtctactgagttgttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgttggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattagggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtaggtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttttaatctaagatcttgcccttacgtcggtactgatgtattccaatgattaacgattgaagcaatacacagtgtttctgaaaaaaaaaaaaaaaaaaataagaaaaaaaaaaaactcgaggggggcccgtaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33558" stop="144014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33858" g_stop="34577" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="719" r_length="719" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E543907" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33858" e_stop="34577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTTCATCAGTAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTTGATTCGAGTTTTCTTAAAATTTTGATTTAAATAGATCTATTAATTTACAACTGCACA</genome_strand>
        <mrna_strand>GAGTTTTCATCAGTAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTC-TGAAAAAAAAAAAAAAAAAAATAAGAAAAAAAAAAAACTCGAGGGGGGCCCGTACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344348" ref_strand="+" ref_description="SGN-E344348 [cTOF-16-P19]">
      <seq>gagttttcatcagtaaaaagcaaaatggcccgtaccaagcagactgctcgcaaatccactggtggaaaggcaccaaggaagcagctagctaccaaggccgcaagaaagtcagctccggctaccggaggagtgaagaagcctcaccgtttcaggccaggaactgtagctttaagggaaatcaggaagtaccagaagtctactgagttgttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgttggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattagggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtaggtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttttaatctaagatcttgcccttacgtcggtactgatgtattccaatgattaacgattgaagcaatacacagtgtttcttgattaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33558" stop="34824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33858" g_stop="34527" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E344348" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33858" e_stop="34527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTTCATCAGTAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTTGATTCGA</genome_strand>
        <mrna_strand>GAGTTTTCATCAGTAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTTGATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543908" ref_strand="+" ref_description="SGN-E543908 [TUS-65-P12]">
      <seq>gagttttcatcagtaaaaagcaaaatggcccgtaccaagcagactgctcgcaaatccactggtggaaaggcaccaaggaagcagctagctaccaaggccgcaagaaagtcagctccggctaccggaggagtgaagaagcctcaccgtttcaggccaggaactgtagctttaagggaaatcaggaagtaccagaagtctactgagttgttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgttggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattagggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtaggtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttttaatctaagatcttgcccttacgtcggtactgatgtattccaatgattaacgattgaagcaatacacagtgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33558" stop="34818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33858" g_stop="34518" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E543908" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33858" e_stop="34518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTTCATCAGTAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTC</genome_strand>
        <mrna_strand>GAGTTTTCATCAGTAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305734" ref_strand="+" ref_description="SGN-E305734 [cLEX-14-A4]">
      <seq>agttttcatcagtaaaaagcaaaatggcccgtaccaagcagactgctcgcaaatccactggtggaaaggcaccaaggaagcagctagctaccaaggccgcaagaaagtcagctccggctaccggaggagtgaagaagcctcaccgtttcaggccaggaactgtagctttaagggaaatcaggaagtaccagaagtctactgagttgttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgttggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattagggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtaggtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttttaatctaagatcttgcccttacgtcggtactgatgtattccaatgattaacgattgaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33559" stop="34803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33859" g_stop="34503" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E305734" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33859" e_stop="34503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTTCATCAGTAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGC</genome_strand>
        <mrna_strand>AGTTTTCATCAGTAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346394" ref_strand="+" ref_description="SGN-E346394 [cTOF-23-E24]">
      <seq>agttttcatcagtaaaaagcaaaatggcccgtaccaagcagactgctcgcaaatccactggtggaaaggcaccaaggaagcagctagctaccaaggccgcaagaaagtcagctccggctaccggaggagtgaagaagcctcaccgtttcaggccaggaactgtagctttaagggaaatcaggaagtaccagaagtctactgagttgttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgttggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattagggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtaggtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttttaatctaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33559" stop="34753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33859" g_stop="34452" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="595" polyA_stop="607"/>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E346394" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33859" e_stop="34452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTTCATCAGTAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAG</genome_strand>
        <mrna_strand>AGTTTTCATCAGTAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469970" ref_strand="+" ref_description="SGN-E469970 [cSTB-16-E21]">
      <seq>gttttcttcagtaaaaattaaaatggccccgtcccaagccaaactgcccgccaaatccactggtggaaaggcacccaaggaagccagctagccacctaagggctgcaaggaagtcagctccggctacccggaggagtgaagaagcctcaccgtttcaggccaggaacctgtggctttaagggaaatcaggaagtacccagaagtctactgagttgttgatcaggaagcttccatttcagaggctagtgagggaaattgctcaggatttcaaaacagatctgaggttccagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgttggtctctttgaagatactaatctctgtgcaatccatgccaagagggtcactatcatgcccaaggatattcagcttgctaggaggatccgcggagaaagggcttaagaagaaacttttaatggttaaaagttaattagggtttatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33560" stop="34634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33860" g_stop="34334" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E469970" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33860" e_stop="34334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCATCAGTAAAAAGCAAAATGG-CCCGTACCAAG-CAGACTGCTCG-CAAATCCACTGGTGGAAAGGCA-CCAAGGAAG-CAGCTAGCTACC-AA-GGCCGCAAGAAAGTCAGCTCCGGCTA-CCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAA-CTGTAGCTTTAAGGGAAATCAGGAAGTA-CCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTT-AAAGCTGATTAGGGTTTGTCTGC</genome_strand>
        <mrna_strand>GTTTTCTTCAGTAAAAATTAAAATGGCCCCGTCCCAAGCCAAACTGCCCGCCAAATCCACTGGTGGAAAGGCACCCAAGGAAGCCAGCTAGCCACCTAAGGGCTGCAAGGAAGTCAGCTCCGGCTACCCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACCTGTGGCTTTAAGGGAAATCAGGAAGTACCCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCATTTCAGAGGCTAGTGAGGGAAATTGCTCAGGATTTCAAAACAGATCTGAGGTTCCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATCCATGCCAAGAGGGTCACTATCATGCCCAAGGATATTCAGCTTGCTAGGAGGATCCGCGGAGAAAGGGCTTAAGAAGAAACTTTTAATGGTTAAAAGTTAATTAGGGTTTATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345098" ref_strand="+" ref_description="SGN-E345098 [cTOF-22-B13]">
      <seq>tttcatcagtaaaaagcaaaatggcccgtaccaagcagactgctcgcaaatccactggtggaaaggcaccaaggaagcagctagctaccaaggccgcaagaaagtcagctccggctaccggaggagtgaagaagcctcaccgtttcaggccaggaactgtagctttaagggaaatcaggaagtaccagaagtctactgagttgttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgttggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattagggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtaggtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttttaaaaaaaaaaaannnnnnnnaaannnnnnaaaaaaaaaaaaaaaaaannaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33562" stop="62825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33862" g_stop="34509" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E345098" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33862" e_stop="34509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCAGTAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACA</genome_strand>
        <mrna_strand>TTTCATCAGTAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAA-AAAAAAAAAANNNNNNNNAAANNNNNNAAAAAAAAAAAAAAAAAANNAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715204" ref_strand="+" ref_description="SGN-E715204 [FB13CE10]">
      <seq>gtaaaaagcaaaatggcccgtaccaagcagactgctcgcaaatccactggtggaaaggcaccaaggaagcagctagctaccaaggccgcaagaaagtcagctccggctaccggaggagtgaagaagcctcaccgtttcaggccaggaactgtagctttaagggaaatcaggaagtaccagaagtctactgagttgttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgttggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattagggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtaggtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttttannaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33570" stop="34745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33870" g_stop="34445" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="579" polyA_stop="600"/>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E715204" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33870" e_stop="34445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTA</genome_strand>
        <mrna_strand>GTAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344912" ref_strand="+" ref_description="SGN-E344912 [cTOF-21-D18]">
      <seq>taaaaagcaaaatggcccgtaccaagcagactgctcgcaaatccactggtggaaaggcaccaaggaagcagctagctaccaaggccgcaagaaagtcagctccggctaccggaggagtgaagaagcctcaccgtttcaggccaggaactgtagctttaagggaaatcaggaagtaccagaagtctactgagttgttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgttggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattagggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtaggtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttttaatctaagatcttgcccttacgtcggtactgatgtattccaatgattaacgattgaagcatacacagtgtttcttgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33571" stop="34822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33871" g_stop="34530" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E344912" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33871" e_stop="34530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTTGATTCGAGTT</genome_strand>
        <mrna_strand>TAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGC-ATACACAGTGTTTCTTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747267" ref_strand="+" ref_description="SGN-E747267 [GI|47104695]">
      <seq>aaaaagcaaaatggcccgtaccaagcagactgctcgcaaatccactggtggaaaggcaccaaggaagcagctagctaccaaggccgcaagaaagtcagctccggctaccggaggagtgaagaagcctcaccgtttcaggccaggaactgtagctttaagggaaatcaggaagtaccagaagtctactgagttgttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgttggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattagggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtaggtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttttaatctaagatcttgcccttacgtcggtactgatgtattccaatgattaacgattgaagcaatacacagtgtttcttgattaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33572" stop="34824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33872" g_stop="34527" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="657" polyA_stop="674"/>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E747267" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33872" e_stop="34527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTTGATTCGA</genome_strand>
        <mrna_strand>AAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTTGATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288920" ref_strand="+" ref_description="SGN-E288920 [cLES-17-K15]">
      <seq>aagcaaaatggcccgtaccaagcagactgctcgcaaatccactggtggaaaggcaccaaggaagcagctagctaccaaggccgcaagaaagtcagctccggctaccggaggagtgaagaagcctcaccgtttcaggccaggaactgtagctttaagggaaatcaggaagtaccagaagtctactgagttgttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgttggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattagggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33575" stop="34679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33875" g_stop="34379" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E288920" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33875" e_stop="34379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTA</genome_strand>
        <mrna_strand>AAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301754" ref_strand="+" ref_description="SGN-E301754 [cLEX-9-J14]">
      <seq>tactttctgtctgtgtttttatcaatttcaaatggcccgtactaagcaaacagctcgcaaatccacaggtggaaaggcaccaaggaagcagctagctaccaaggctgcaagaaagtcagctccggcaacgggaggagtgaagaagcctcaccgtttccgtccaggaactgtggctttgagggaaatcaggaagtatcagaagtccacggagttgttgattaggaagcttccatttcaaagattggtgagggaaattgctcaggatttcaagacagatctgaggtttcagagtagtgctgttgctgctctacaagaggctgctgaggcttaccttgttggtctctttgaagatactaatctttgtgcaattcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33580" stop="34524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33878" g_stop="34224" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="374" r_length="346" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E301754" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33878" e_stop="34224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACG</genome_strand>
        <mrna_strand>C-AAATGGCCCGTACTAAGCAAACAGCTCGCAAATCCACAGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCTGCAAGAAAGTCAGCTCCGGCAACGGGAGGAGTGAAGAAGCCTCACCGTTTCCGTCCAGGAACTGTGGCTTTGAGGGAAATCAGGAAGTATCAGAAGTCCACGGAGTTGTTGATTAGGAAGCTTCCATTTCAAAGATTGGTGAGGGAAATTGCTCAGGATTTCAAGACAGATCTGAGGTTTCAGAGTAGTGCTGTTGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTTGTTGGTCTCTTTGAAGATACTAATCTTTGTGCAATTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330669" ref_strand="+" ref_description="SGN-E330669 [cTOD-8-E7]">
      <seq>tggcccgtaccaagcagactgctcgcaaatccactggtggaaaggcaccaaggaagcagctagctaccaaggccgcaagaaagtcagctccggctaccggaggagtgaagaagcctcaccgtttcaggccaggaactgtagctttaagggaaatcaggaagtaccagaagtctactgagttgttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgttggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33583" stop="34619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33883" g_stop="34319" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E330669" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33883" e_stop="34319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGA</genome_strand>
        <mrna_strand>TGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316639" ref_strand="+" ref_description="SGN-E316639 [cTOB-7-J13]">
      <seq>ccaagcagactggtcgcaaatccactgggggaaaggcaccaaggaagcagctagctaccaaggccgcaagaaagtcagctccggctaccggaggagtgaagaagcctcaccgtttcaagccaggaactgtagctttaagggaaatcaggaagtaccagaagtctactgagttgttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagagctgtggctgctctacaagaggctgctgaggcttacctcgttgggctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcaactcgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33592" stop="34618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33892" g_stop="34318" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E316639" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33892" e_stop="34318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTG</genome_strand>
        <mrna_strand>CCAAGCAGACTGGTCGCAAATCCACTGGGGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAAGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGAGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGGCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAACTCGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339202" ref_strand="+" ref_description="SGN-E339202 [cTOF-4-G15]">
      <seq>cagactgctcgcaaatccactggtggaaaggcaccaaggaagcagctagctaccaaggccgcaagaaagtcagctccggctaccggaggagtgaagaagcctcaccgtttcaggccaggaactgtagctttaagggaaatcaggaagtaccagaagtctactgagttgttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgttggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattagggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtaggtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttttaatctaagatcttgcccttacgtcggtactgatgtattccaatgattaacgattgaagcaatacacagtgtttcttgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33597" stop="34822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33897" g_stop="34521" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="626" polyA_stop="640"/>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E339202" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33897" e_stop="34521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTTG</genome_strand>
        <mrna_strand>CAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308936" ref_strand="+" ref_description="SGN-E308936 [cLEY-23-E7]">
      <seq>actggtggaaaggcaccaaggaagcagctagctaccaaggccgcaagaaagtcagctccggctaccggaggagtgaagaagcctcaccgtttcaggccaggaactgtagctttaagggaaatcaggaagtaccagaagtctactgagttgttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgttggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattagggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtaggtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttttaatctaagatcttgcccttacgtcggtactgatgtattccaatgattaacgattgaagcaatacacagtgtttcttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33615" stop="34822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33915" g_stop="34525" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E308936" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33915" e_stop="34525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTTGATTC</genome_strand>
        <mrna_strand>ACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357449" ref_strand="+" ref_description="SGN-E357449 [cTOS-23-G3]">
      <seq>gagtgaagaagcctcaccgtttcaggccaggaactgtagctttaagggaaatcaggaagtaccagaagtctactgagttgttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgttggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattaaggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtaagtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttttaatctaagatcttgcccttacgtcggtactgatgtattccaatgattaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33685" stop="34793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33985" g_stop="34495" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E357449" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33985" e_stop="34495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACG</genome_strand>
        <mrna_strand>GAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAAGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAAGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349635" ref_strand="+" ref_description="SGN-E349635 [cTOS-1-N24]">
      <seq>tttcaggccaggaactgtagctttaagggaaatcaggaagtaccagaagtctactgagttgttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgttggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattagggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtaggtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttttaatctaagatcttgcccttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33704" stop="34764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34004" g_stop="34465" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="463" polyA_stop="473"/>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E349635" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34004" e_stop="34465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTAC</genome_strand>
        <mrna_strand>TTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351318" ref_strand="+" ref_description="SGN-E351318 [cTOS-6-P18]">
      <seq>tttcaggccaggaactgtagctttaagggaaatcaggaagtaccagaagtctactgagttgttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgttggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattagggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtaggtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttttaatctaagatcttgcccttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33704" stop="34764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34004" g_stop="34465" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="463" polyA_stop="473"/>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E351318" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34004" e_stop="34465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTAC</genome_strand>
        <mrna_strand>TTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351882" ref_strand="+" ref_description="SGN-E351882 [cTOS-8-D1]">
      <seq>ttcaggccaggaactgtagctttaagggaaatcaggaagtaccagaagtctactgagttgttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgtcggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattagggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtaggtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttttaatctaagatcttgcccttacgtcggtactgatgtattccaatgattaacgattgaagcaatacacagtgtttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33705" stop="34820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34005" g_stop="34520" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E351882" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34005" e_stop="34520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTT</genome_strand>
        <mrna_strand>TTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTCGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356564" ref_strand="+" ref_description="SGN-E356564 [cTOS-21-I24]">
      <seq>ggccaggaactgtagctttaagggaaatcaggaagtaccagaagtctactgagttgttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgttggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattagggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtaggtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttttaatctaagatcttgcccttacgtcggtactgatgtattccaatgattaacgattgaagcaatacacagtggttcttgataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33709" stop="34823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34009" g_stop="34521" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="514" polyA_stop="526"/>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E356564" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34009" e_stop="34521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTTG</genome_strand>
        <mrna_strand>GGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGGTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350454" ref_strand="+" ref_description="SGN-E350454 [cTOS-5-J14]">
      <seq>ggccaggaactgtagctttaagggaaatcaggaagtaccagaagtctactgagttgttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgttggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattagggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtaggtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttttaatctaagatcttgcccttacgtcggtactgatgtattccaatgattaacgattgaagcaatacacagtgtttcttgataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33709" stop="34823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34009" g_stop="34521" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="514" polyA_stop="526"/>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E350454" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34009" e_stop="34521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTTG</genome_strand>
        <mrna_strand>GGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352971" ref_strand="+" ref_description="SGN-E352971 [cTOS-14-K17]">
      <seq>ggccaggaactgtagctttaagggaaatcaggaagtaccagaagtctactgagttgttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgttggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattagggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtaggtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttttaatctaagatcttgcccttacgtcggtactgatgtattccaatgattaacgattgaagcaatacacagtgtttcttgataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33709" stop="34823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34009" g_stop="34521" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="514" polyA_stop="526"/>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E352971" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34009" e_stop="34521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTTG</genome_strand>
        <mrna_strand>GGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351273" ref_strand="+" ref_description="SGN-E351273 [cTOS-6-N5]">
      <seq>ggaaatcaggaagtaccagaagtctactgagttgttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgttggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattagggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtaggtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttttaatctaagatcttgcccttacgtcggtactgatgtattccaatgattaacgattgaagcaatacacagtgtttcttgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33731" stop="34822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34031" g_stop="34530" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E351273" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34031" e_stop="34530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTTGATTCGAGTT</genome_strand>
        <mrna_strand>GGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373173" ref_strand="+" ref_description="SGN-E373173 [TUS-32-I11](-)">
      <seq>gttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgttggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattagggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtaggtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33764" stop="62825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34064" g_stop="34455" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E373173" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34064" e_stop="34455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATC</genome_strand>
        <mrna_strand>GTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373007" ref_strand="+" ref_description="SGN-E373007 [TUS-32-J11](-)">
      <seq>gttgatcaggaagcttccttttcagaggctagtaagggaaatcgctcaggatttcaaaacagatctgaggtttcacagcagttctgtggctgctctacaagaggatgatgaggcttacctcgttggtctctttcaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcaacattctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattacggtttgtttgttagggttagtggcgtaaatcccaatagataattttagttgaagtaggtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctaattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33764" stop="34738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34064" g_stop="34434" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="376" polyA_stop="392"/>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E373007" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34064" e_stop="34434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCT</genome_strand>
        <mrna_strand>GTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTAAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCACAGCAGTTCTGTGGCTGCTCTACAAGAGGATGATGAGGCTTACCTCGTTGGTCTCTTTCAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAACATTCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTACGGTTTGTTTGTTAGGGTTAGTGGCGTAAATCCCAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292865" ref_strand="+" ref_description="SGN-E292865 [cLET-11-O16]">
      <seq>ttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgttggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattagggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtaggtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33765" stop="62825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34065" g_stop="34456" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E292865" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34065" e_stop="34456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCT</genome_strand>
        <mrna_strand>TTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373174" ref_strand="+" ref_description="SGN-E373174 [TUS-32-I11]">
      <seq>ttgatcaggaagcttccttttcagaggctagtgagggaaatcgctcaggatttcaaaacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgttggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattagggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtaggtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33765" stop="62825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34065" g_stop="34456" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E373174" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34065" e_stop="34456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCT</genome_strand>
        <mrna_strand>TTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239336" ref_strand="+" ref_description="SGN-E239336 [cLEL-9-M6](-)">
      <seq>agtgctgtggctgctctacaagaggctgctgaggcttacctcgttggtctctttgaagatactaatctctgtgcaattcacgccaagagggtcactatcatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattagggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtaggtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttttaatctaagatcttgcccttacgtcggtactgatgtattccaatgattaacgattgaagcaatacacagtgtttcttgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33843" stop="34822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34143" g_stop="34521" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="380" polyA_stop="399"/>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E239336" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34143" e_stop="34521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTTG</genome_strand>
        <mrna_strand>AGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238989" ref_strand="+" ref_description="SGN-E238989 [cLEL-9-M6](-)">
      <seq>gcttacctcgttggtctctttgaagatactaatctctgtgcaattcacgccaaaagggtcactatccatgcccaaagatattcagcttgctaggaggatccgtggagaaagggcttaagaagaaacttttaacggttaaagctgattagggtttgtctgctagggttagtggcgtaaatcctaatagataattttagttgaagtaggtgtaaactgttggtttaccagtttctggatctgattaatgaaaatttgtacctttttctttttaatctaagatcttgcccttacgtcggtactgatgtattccaatgattaacgattgaagcaatacacagtgtttcttgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="33876" stop="34822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34176" g_stop="34521" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="348" polyA_stop="367"/>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E238989" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34176" e_stop="34521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTAT-CATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTTG</genome_strand>
        <mrna_strand>GCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAAAGGGTCACTATCCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207330" ref_strand="+" ref_description="SGN-E207330 [cLEC-30-L12]">
      <seq>atgatcctagacttaaggtggtttcggtggtgggaatgggaggttcaggaaagaccaccctggttaagaaagtgtatgaggatgcaacagtcaagaaaaacttcaatagtcttgcttggataacagtttccaagtccttcaaggttgaggaagttttgaaagatatgattcaacagctctacgatgaagtgaagcagccagcacctgaaggtctaaacaccatgagtagtaacagactaaaaacaattgcgaaagtattcctgcaatcaagaacatatgtgctagtttttgatgatgtttggagcattcaagcttgggaagctatcagatatgcattgcctgatgtaaatgacggaagtcgtgttatcctcacaacacgtcttttggatgtggcttccttttgtagcatagagaccaatggctatgtttatgaggtgaaacccttgtctactgaagagtcatggattcttttctgccaaaaggccccaattttttttttcatggcttttcatgtccttcacatttggagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="43282" stop="44402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43582" g_stop="44063" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E207330" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43582" e_stop="44063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATCCTAGACTTAAGGTGGTTTCGGTGGTGGGAATGGGAGGTTCAGGAAAGACCACCCTGGTTAAGAAAGTGTATGAGGATGCAACAGTCAAGAAAAACTTCAATAGTCTTGCTTGGATAACAGTTTCCAAGTCCTTCAAGGTTGAGGAAGTTTTGAAAGATATGATTCAACAGCTCTACGATGAAGTGAAGCAGCCAGCACCTGAAGGTCTAAACACCATGAGTAGTAACAGACTAAAAACAATTGCGAAAGTATTCCTGCAATCAAGAACATATGTGCTAGTTTTTGATGATGTTTGGAGCATTCAAGCTTGGGAAGCTATCAGATATGCATTGCCTGATGTAAATGACGGAAGTCGTGTTATCCTCACAACACGTCTTTTGGATGTGGCTTCCTTTTGTAGCATAGAGACCAATGGCTATGTTTATGAGGTGAAACCCTTGTCTACTGAAGAGTCATGGATTCTTTTCTGCCAAAAG</genome_strand>
        <mrna_strand>ATGATCCTAGACTTAAGGTGGTTTCGGTGGTGGGAATGGGAGGTTCAGGAAAGACCACCCTGGTTAAGAAAGTGTATGAGGATGCAACAGTCAAGAAAAACTTCAATAGTCTTGCTTGGATAACAGTTTCCAAGTCCTTCAAGGTTGAGGAAGTTTTGAAAGATATGATTCAACAGCTCTACGATGAAGTGAAGCAGCCAGCACCTGAAGGTCTAAACACCATGAGTAGTAACAGACTAAAAACAATTGCGAAAGTATTCCTGCAATCAAGAACATATGTGCTAGTTTTTGATGATGTTTGGAGCATTCAAGCTTGGGAAGCTATCAGATATGCATTGCCTGATGTAAATGACGGAAGTCGTGTTATCCTCACAACACGTCTTTTGGATGTGGCTTCCTTTTGTAGCATAGAGACCAATGGCTATGTTTATGAGGTGAAACCCTTGTCTACTGAAGAGTCATGGATTCTTTTCTGCCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246136" ref_strand="+" ref_description="SGN-E246136 [cLEF-40-K20]">
      <seq>agaacaggaacaacattagggaatggggaatgcttaatcacagccttggccctgaactggatagcaatgacaaatttgagagtatgagaatagttttgttactcagtttcaatgatctcccctactatcttaagccatgtttcctgtaattgagcacttatcctgaggattatctaattgagcgcaatacactgatctaccggtggataacgtaaggatttgtaaaacaaaaagatcggaggacagttgaagacgttgcagactgctatctcaatgagctcatcaacagaagcttgatccatcctgtgcagtacagtgatgacagtagcatgaaattgggtaggattcatgatctgtaccacgagcttattctatcagaatcaagagatgataactttactgcaacagttgatgagcataatagattgtggcctgaaaaaactcgacggctttcaatgcatggcatgttggggaacctacaagtgaaaaggtcagtcactaaacttcgctctttgcttacatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="43879" stop="45003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44179" g_stop="44703" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E246136" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44179" e_stop="44703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACAGGAACAACATTAGGGAATGGGGAATGCTTAATCACAGCCTTGGCCCTGAACTGGATTGCAATGACAAATTTGAGAGTATGAGAATAGTTTTGTTACTCAGTTTCAATGATCTCCCCTACTATCTTAAGCCATGTTTCCTGTATTTGAGCATTTATCCTGAGGATTATCTAATTGAGCGCAATACACTGATCTACCGGTGGATAACGGAAGGATTTGTAAAACAAAAAGAACGGAGGACAGTTGAAGACGTTGCAGACGGCTATCTCAATGAGCTCATCAACAGAAGCTTGATCCACCCTGTGCAGTACAATGATGACGGTAGCATGAAATTGGGTAGGATTCATGATCTGTACCGCGAGCTTATTCTATCAAAATCAAGAGATGATAACTTTACTGCAACAGTTGATGAGCATAATAAATTGTGGCCTGAAAAAACTCGACGGCTTTCAATGCATGGCATGTTGGGGAACCTACAAGTGAAAAGGTCAGTCACTAAACTTCGCTCTTTGCTTACATTTG</genome_strand>
        <mrna_strand>AGAACAGGAACAACATTAGGGAATGGGGAATGCTTAATCACAGCCTTGGCCCTGAACTGGATAGCAATGACAAATTTGAGAGTATGAGAATAGTTTTGTTACTCAGTTTCAATGATCTCCCCTACTATCTTAAGCCATGTTTCCTGTAATTGAGCACTTATCCTGAGGATTATCTAATTGAGCGCAATACACTGATCTACCGGTGGATAACGTAAGGATTTGTAAAACAAAAAGATCGGAGGACAGTTGAAGACGTTGCAGACTGCTATCTCAATGAGCTCATCAACAGAAGCTTGATCCATCCTGTGCAGTACAGTGATGACAGTAGCATGAAATTGGGTAGGATTCATGATCTGTACCACGAGCTTATTCTATCAGAATCAAGAGATGATAACTTTACTGCAACAGTTGATGAGCATAATAGATTGTGGCCTGAAAAAACTCGACGGCTTTCAATGCATGGCATGTTGGGGAACCTACAAGTGAAAAGGTCAGTCACTAAACTTCGCTCTTTGCTTACATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368598" ref_strand="+" ref_description="SGN-E368598 [TUS-23-L4]">
      <seq>gatgacagaaccatgaacttgattatgattcatgatctgtgccaggagcttattctatcagaatcaagagatgataactttactgcaacagttgatgagcataatagattgtggcctgaaaaaactcgacggctttcaatgcatggcatgttggggaacctacaagtgaaaaggtcagtcactaaacttcgctctttgcttacatttggtgtagcagaaccacagtccttgtcttgcataagtcaagtgcttggtcgctcccggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="44196" stop="45061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44496" g_stop="44761" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E368598" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44496" e_stop="44761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGACGGTAGCATGAAATTGGGTAGGATTCATGATCTGTACCGCGAGCTTATTCTATCAAAATCAAGAGATGATAACTTTACTGCAACAGTTGATGAGCATAATAAATTGTGGCCTGAAAAAACTCGACGGCTTTCAATGCATGGCATGTTGGGGAACCTACAAGTGAAAAGGTCAGTCACTAAACTTCGCTCTTTGCTTACATTTGGTGTAGCAGATCCACAGTCCTTGTCTTGCATAAGTCAAGTGCTTGGTAGCTCCCGGAT</genome_strand>
        <mrna_strand>GATGACAGAACCATGAACTTGATTATGATTCATGATCTGTGCCAGGAGCTTATTCTATCAGAATCAAGAGATGATAACTTTACTGCAACAGTTGATGAGCATAATAGATTGTGGCCTGAAAAAACTCGACGGCTTTCAATGCATGGCATGTTGGGGAACCTACAAGTGAAAAGGTCAGTCACTAAACTTCGCTCTTTGCTTACATTTGGTGTAGCAGAACCACAGTCCTTGTCTTGCATAAGTCAAGTGCTTGGTCGCTCCCGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331072" ref_strand="+" ref_description="SGN-E331072 [cTOD-6-G20]">
      <seq>agtacctctgagatccattggaagactcaaacagctagaaatattagatctcaagcagacacatgtcactgagttgcctgtggagattttaaaacttgaaaatctccgtcaccttttagtctatagccatgtatcctattcgtatcttccttacaactgttcaccaggttttaaggctttccgaggaattggagctttgagagccttgcagaaacttgtgtatattgaggcaacccctggcagtggcatacttagagaagtaggaatgttgggtgaactgagacgactttgtattctgaagttgagaaaagaagatgggaggacagtgtgctcatcaattcaaaagctccgcaagcttgagtctttaaatcttaaatcggtggaagagcatgagatacttgatctttcttacatggcatctcctccgcctcttcttcagcgcctgtatttgacaggacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="44567" stop="45627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44867" g_stop="45327" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E331072" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44867" e_stop="45327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTACTTCCAAGATCCATTGGAAGACTCAAACAGCTAGAAATATTAGATCTCAAGCAGACACATGTCACTGAGTTGCCTGTGGAGATTTTAAAACTTGAAAATCTCCGTCACCTTTTAGTCTATAGCCATGTATCCTATTCGTATCTTCCTTACAACTGTTCACCAGGTTTTAAGGCTTTCCGAGGAATTGGAGCTTTGAGAGCCTTGCAGAAACTTGTGTATATTGAGGCCACCCCTGGCAGTGGCATACTTAGAGAAGTAGGAATGTTGGGTGAACTGAGACGACTTTGTATTCTGAAGTTGAGAAAAGAAGATGGGAGGACAGTGTGCTCATCAATTCAAAAGCTCCGCAAGCTGGAGTCTTTAAATCTTAAATCGGTGGAAGAGCATGAGATACTTGATCTTTCTTACATGGCATCTCCTCCGCCTCTTCTTCAGCGCCTGTATTTGACAGGACACA</genome_strand>
        <mrna_strand>AGTACCTCTGAGATCCATTGGAAGACTCAAACAGCTAGAAATATTAGATCTCAAGCAGACACATGTCACTGAGTTGCCTGTGGAGATTTTAAAACTTGAAAATCTCCGTCACCTTTTAGTCTATAGCCATGTATCCTATTCGTATCTTCCTTACAACTGTTCACCAGGTTTTAAGGCTTTCCGAGGAATTGGAGCTTTGAGAGCCTTGCAGAAACTTGTGTATATTGAGGCAACCCCTGGCAGTGGCATACTTAGAGAAGTAGGAATGTTGGGTGAACTGAGACGACTTTGTATTCTGAAGTTGAGAAAAGAAGATGGGAGGACAGTGTGCTCATCAATTCAAAAGCTCCGCAAGCTTGAGTCTTTAAATCTTAAATCGGTGGAAGAGCATGAGATACTTGATCTTTCTTACATGGCATCTCCTCCGCCTCTTCTTCAGCGCCTGTATTTGACAGGACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572551" ref_strand="+" ref_description="SGN-E572551 [31722]">
      <seq>cctcgtgccgggaatgttgggtgaactgagacgactttgtattctgaagttgagaaaagaagatggttggactgtgtgctcatcaattcaaaagctccgcaagcttgagtctttaaatcttaaatcagtggaagagcatgagatccttgatctttcttatctgtcgtctcctccgcctcttcttcagcgcctgtatttgacaggacacattgttaagttgcctgcgtggattcaagatcttaattccttggtcaaaatttacttcaggtggactcatttaacagaagatccactgaaatatctacaagatttgcccaatcttgtccatcttgaatttcttgtaggatacacaggaaaggaactctactttgagcaagggaaatttcaaaggcttaagcttttaaatttggacaagctggaaggactaaggcaggtgacaatcggcgaaggtgcagtacctcatcttgagaagctggttatccagagatgtgctttgcttgaaactgtgccaactggaatcgagtacctcctaaatctgaaggttcttgaattttttgacatgcctgatgaatttatcatgacattggtccagaaaaactaggtgctgatgcttggacaagtttcacatatccctgaagtattctatacatattgcagggacggttgttggatggtacattcactaaaggaaaaaggagaacaatccagatttctgatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="44829" stop="46136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45117" g_stop="45836" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E572551" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45117" e_stop="45836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGAGAAGTAGGAATGTTGGGTGAACTGAGACGACTTTGTATTCTGAAGTTGAGAAAAGAAGATGGGAGGACAGTGTGCTCATCAATTCAAAAGCTCCGCAAGCTGGAGTCTTTAAATCTTAAATCGGTGGAAGAGCATGAGATACTTGATCTTTCTTACATGGCATCTCCTCCGCCTCTTCTTCAGCGCCTGTATTTGACAGGACACATTGTTAAGTTGCCTGCGTGGATTCAAGATCTTAATTCCTTAGTCAAAATTTACTTCAGGTGGACTCATTTATCAGAAGATCCACTGAAATATCTCCAAGATTTGCCCAATCTTGTCCATCTTGAATTTCTTGTAGGATACACCGGAAGGGAACTGTACTTTGAGCAAGGCAAGTTTCAAAGGCTTAAGCTTTTAAATTTTGACATGTTGGAAGGACTAAGGCAGGTGACAATCGGGGAAGGTGCAGTACCTCATCTTGAGAAGCTGGTTATCCAGCGATGTGCTTTGCTTGAGACCGTGCCAACTGGAATAGAGTGCCTCCTAAATCTGAAGGTTCTTGAATTCTTTGACATGCCTGATGAATTTATCATGACGTTGCGTCCAGACAAACTAGGTGCTGATGCTTGGA-AAGTTTCACATATCCGTGAAGTATTCTATACATATTGGAGGGACGGTTGTTGGATGGTACATTCACTAAAGG-AAAAGGAAAACAAT-CACATTTCTGATCCA</genome_strand>
        <mrna_strand>CCTCGTGCCG--GGAATGTTGGGTGAACTGAGACGACTTTGTATTCTGAAGTTGAGAAAAGAAGATGGTTGGACTGTGTGCTCATCAATTCAAAAGCTCCGCAAGCTTGAGTCTTTAAATCTTAAATCAGTGGAAGAGCATGAGATCCTTGATCTTTCTTATCTGTCGTCTCCTCCGCCTCTTCTTCAGCGCCTGTATTTGACAGGACACATTGTTAAGTTGCCTGCGTGGATTCAAGATCTTAATTCCTTGGTCAAAATTTACTTCAGGTGGACTCATTTAACAGAAGATCCACTGAAATATCTACAAGATTTGCCCAATCTTGTCCATCTTGAATTTCTTGTAGGATACACAGGAAAGGAACTCTACTTTGAGCAAGGGAAATTTCAAAGGCTTAAGCTTTTAAATTTGGACAAGCTGGAAGGACTAAGGCAGGTGACAATCGGCGAAGGTGCAGTACCTCATCTTGAGAAGCTGGTTATCCAGAGATGTGCTTTGCTTGAAACTGTGCCAACTGGAATCGAGTACCTCCTAAATCTGAAGGTTCTTGAATTTTTTGACATGCCTGATGAATTTATCATGACATTG-GTCCAGAAAAACTAGGTGCTGATGCTTGGACAAGTTTCACATATCCCTGAAGTATTCTATACATATTGCAGGGACGGTTGTTGGATGGTACATTCACTAAAGGAAAAAGGAGAACAATCCAGATTTCTGATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337743" ref_strand="+" ref_description="SGN-E337743 [cTOE-17-P8]">
      <seq>aagatcttaattccttagtcattatttacttcaggtggacccgtttatcagaagatccactgaaatatctccaagatttgcccaatcttgaatttcttgtaggatacaccggaagggaactgtactttgagcaaggcaaatttcaaaggcttaagcttttaaattttgacatgttggaaggactaaggcaggtgacaatcggggaaggtgcagtacctcattttgagaagctggttatccagcgatgtgctttgcttgagaccgtgccaactggaatagagtgcctcctaaatctgaaggttcttgaattctttgacatgcctgatgaatttatcatgacgttgcgtccagacaaactaggtgctgatgcttggaaagtttcacatatccgtgaagtattctatacatattggagggacggttgttggatggtacattcactaaaggaaaaggaaaacaatcacatttctgatccatctggagctgtgactaggacctatggaaggcgaaattcactctaagtcgtttgaaggacgtanagctccagtctccttccaatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="45052" stop="46223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45352" g_stop="45923" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E337743" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45352" e_stop="45923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCTTAATTCCTTAGTCAAAATTTACTTCAGGTGGACTCATTTATCAGAAGATCCACTGAAATATCTCCAAGATTTGCCCAATCTTGTCCATCTTGAATTTCTTGTAGGATACACCGGAAGGGAACTGTACTTTGAGCAAGGCAAGTTTCAAAGGCTTAAGCTTTTAAATTTTGACATGTTGGAAGGACTAAGGCAGGTGACAATCGGGGAAGGTGCAGTACCTCATCTTGAGAAGCTGGTTATCCAGCGATGTGCTTTGCTTGAGACCGTGCCAACTGGAATAGAGTGCCTCCTAAATCTGAAGGTTCTTGAATTCTTTGACATGCCTGATGAATTTATCATGACGTTGCGTCCAGACAAACTAGGTGCTGATGCTTGGAAAGTTTCACATATCCGTGAAGTATTCTATACATATTGGAGGGACGGTTGTTGGATGGTACATTCACTAAAGGAAAAGGAAAACAATCACATTTCTGATCCATCTGGAGCTGTGACTAGGACCTATGGAAGGCGAAATTCACTCTAAGTCGTTTGAAGGACGTAGAGCTCCAGTCTCCTTCCAATTTCT</genome_strand>
        <mrna_strand>AAGATCTTAATTCCTTAGTCATTATTTACTTCAGGTGGACCCGTTTATCAGAAGATCCACTGAAATATCTCCAAGATTTGCCCAATCTTG---A------ATTTCTTGTAGGATACACCGGAAGGGAACTGTACTTTGAGCAAGGCAAATTTCAAAGGCTTAAGCTTTTAAATTTTGACATGTTGGAAGGACTAAGGCAGGTGACAATCGGGGAAGGTGCAGTACCTCATTTTGAGAAGCTGGTTATCCAGCGATGTGCTTTGCTTGAGACCGTGCCAACTGGAATAGAGTGCCTCCTAAATCTGAAGGTTCTTGAATTCTTTGACATGCCTGATGAATTTATCATGACGTTGCGTCCAGACAAACTAGGTGCTGATGCTTGGAAAGTTTCACATATCCGTGAAGTATTCTATACATATTGGAGGGACGGTTGTTGGATGGTACATTCACTAAAGGAAAAGGAAAACAATCACATTTCTGATCCATCTGGAGCTGTGACTAGGACCTATGGAAGGCGAAATTCACTCTAAGTCGTTTGAAGGACGTANAGCTCCAGTCTCCTTCCAATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283821" ref_strand="+" ref_description="SGN-E283821 [cLES-1-F22]">
      <seq>ggtgactaggacctatggaaggcgaaattcactctaagtcgtttgaaggacgtagagctccagtctccttccaatttctgttgtaaataatctctctctgatccttcatcacttcacttttcctgttgtaataagcagtgtatataaatttgttatgttttctttacattgcaagagtgaacttagtgtatgtaatatactgcaactttcagtaatttgtttagaagagttttgtggattctcagagttgcattttgcaaaaacaacaaccacataatgcctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="45546" stop="46404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45845" g_stop="46104" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E283821" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>260</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45845" e_stop="46104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGACTAGGACCTATGGAAGGCGAAATTCACTCTAAGTCGTTTGAAGGACGTAGAGCTCCAGTCTCCTTCCAATTTCTGTTGTAAATAATCTCTCTCTGATCCTTCATCACTTCACTTTTCCTGTTGTAATAAGCAGTGTATATAAATTTGTTATGTTTTCTTTACATTGCAAGAGTGAACTTAGTGTATGTAATATGGTGCAACTTTCAGTAATTTGTTTAGAAGAGTTTTGTGGATTCTCAGAGTTGCATTTTGCAA</genome_strand>
        <mrna_strand>GGTGACTAGGACCTATGGAAGGCGAAATTCACTCTAAGTCGTTTGAAGGACGTAGAGCTCCAGTCTCCTTCCAATTTCTGTTGTAAATAATCTCTCTCTGATCCTTCATCACTTCACTTTTCCTGTTGTAATAAGCAGTGTATATAAATTTGTTATGTTTTCTTTACATTGCAAGAGTGAACTTAGTGTATGTAATATACTGCAACTTTCAGTAATTTGTTTAGAAGAGTTTTGTGGATTCTCAGAGTTGCATTTTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745143" ref_strand="+" ref_description="SGN-E745143 [GI|47105985]">
      <seq>attctaagcttttctcaattcttacttcatcttagcatacgatcgatatggctcgtaccaagcaaactgcccgtaaatcaactggtggaaaggctccaaggaagcagctagccaccaaggctgccagaaagtcagctccggccaccggaggagtgaagaagcctcaccgtttcaggccaggaactgtggctctaagagaaatcaggaaataccaaaagtcaaccgagttgttgatcaggaagctcccatttcagaggctagtgagggaaattgctcaggattttaaaacagatctgaggttttagagcagtgttgtggctgctctacaagaggctgctgaggcctaccttgttgggctctttgaagataccaatctctgtgcaatccatgccaagagggtaactatcatgcccaaggatattcagcttgctaggaggcttcgtggagaaagggcttaggagtttttgttgaatgttaggattggttatgtaaatcatattccttgatgtgtaaacctttggtttagtactattctggaatctgattaatgaaacctgtagttcattttgtttcagctaaagctgatgctcattctatgatctggattagagtaatttacatttccttctttattgcttttgccttttggttgtgtagagtgtacagttctcataagtgtttctcttctccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="48655" stop="130586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48955" g_stop="49648" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49649" i_stop="49994" i_length="346">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.120" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49995" g_stop="50005" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="706" r_length="11" r_score="0.636"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E745143" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48955" e_stop="49648"/>
          <exon e_start="49995" e_stop="50005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTC-AAGCTTTTCTCAATTCTTACTTCATCTTAGCATACGATCGATATGGCTCGTACCAAGCAAACTGCCCGTAAATCAACTGGTGGAAAGGCTCCAAGGAAGCAGCTAGCCACCAAGGCTGCCAGAAAGTCAGTTGCGGCCACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTGGCTCTAAGAGAAATCAGGAAATACCAAAAGTCAACCGAGTTGTTGATCAGGAAGCTCCCATTTCAGAGGCTAGTGAGGGAAATTGCTCAGGATTTTAAAACAGATCTGAGGTTTTAGAGCAGTGTTGTGGCTGCTCTACAAGAGGCTGCTGAGGCCTACCTTGTTGGGCTCTTTGAAGATACCAATCTCTGTGCAATCCATGCCAAGAGGGTAACTATCATGCCCAAGGATATTCAGCTTGCTAGGAGGCTTCGTGGAGAAAGGGCTTAGGAGTTTTTGTTGAATGTTAGGATTGGTTATGTAAATCATATTCCTTGATGTGTAAACCTTTGGTTTAGTACTATTCTGGAATCTGATTAATGAAACCTGTAGTTCATTTTGTTTCAGCTAAAGCTGATGCTCATTCTATGATCTGGATTAGAGTAATTTACATTTCCTTCTTTATTGCTTTTGCCTTTTGGTTGTGTAGAGTGTACAGTTCTCATAAGTGTTTCTCTTCTCCAGAAAGTTGCAATTGTTAAATTATTTGCTAGCTTGTACGATTGCTATCGAGGAAAGAAATATAAGCATTTAGATCTCAATTACTGCAAAAAGATTCCCAACTGGTGTTGACACATTTGTTAATACATTATATGGAAAAGTACATCATTTATGGACCCTCATTCAACGAATCTACTTTCAGATATCTTGTCTCCTGCAAGTCTTTCTACATTGAATATGAACTTAGAGCTGATTGAGTTTTTGAAATGTAGGACTATATAAAGGGATGTGTTGGTTATTAATTACAGTCTTATATTATCAGAAAGCCCTTTCTAACTGTTTGTTGCTTAAATAGGTAATTAAGTTTCTGCAGAGATAGAAAGA</genome_strand>
        <mrna_strand>ATTCTAAGCTTTTCTCAATTCTTACTTCATCTTAGCATACGATCGATATGGCTCGTACCAAGCAAACTGCCCGTAAATCAACTGGTGGAAAGGCTCCAAGGAAGCAGCTAGCCACCAAGGCTGCCAGAAAGTCAGCTCCGGCCACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTGGCTCTAAGAGAAATCAGGAAATACCAAAAGTCAACCGAGTTGTTGATCAGGAAGCTCCCATTTCAGAGGCTAGTGAGGGAAATTGCTCAGGATTTTAAAACAGATCTGAGGTTTTAGAGCAGTGTTGTGGCTGCTCTACAAGAGGCTGCTGAGGCCTACCTTGTTGGGCTCTTTGAAGATACCAATCTCTGTGCAATCCATGCCAAGAGGGTAACTATCATGCCCAAGGATATTCAGCTTGCTAGGAGGCTTCGTGGAGAAAGGGCTTAGGAGTTTTTGTTGAATGTTAGGATTGGTTATGTAAATCATATTCCTTGATGTGTAAACCTTTGGTTTAGTACTATTCTGGAATCTGATTAATGAAACCTGTAGTTCATTTTGTTTCAGCTAAAGCTGATGCTCATTCTATGATCTGGATTAGAGTAATTTACATTTCCTTCTTTATTGCTTTTGCCTTTTGGTTGTGTAGAGTGTACAGTTCTCATAAGTGTTTCTCTTCTCCAAAAA..........................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282343" ref_strand="+" ref_description="SGN-E282343 [cLER-18-M21]">
      <seq>ttcatcttagcatacgatcgatatggctcgtaccaagcaaactgcccgtaaatcaactggtggaaaggctccaaggaagcagctagccaccaaggctgccagaaagtcagctccggccaccggaggagtgaagaagcctcaccgtttcaggccaggaactgtggctctaagagaaatcaggaaataccaaaagtcaaccgagttgttgatcaggaagctcccatttcagaggctagtgagggaaattgctcaggattttaaaacagatctgaggtttcagagcagtgctgtggcagctctacaagaggctgcggaggcctaccttgttgggctctttgaagataccaatctttgtgcaatccatgccaagagggtaactatcatgcccaaggatattcagcttgctaggaggattcgtggagaaagggcataagaatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="48679" stop="49719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48979" g_stop="49419" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E282343" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48979" e_stop="49419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCTTAGCATACGATCGATATGGCTCGTACCAAGCAAACTGCCCGTAAATCAACTGGTGGAAAGGCTCCAAGGAAGCAGCTAGCCACCAAGGCTGCCAGAAAGTCAGTTGCGGCCACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTGGCTCTAAGAGAAATCAGGAAATACCAAAAGTCAACCGAGTTGTTGATCAGGAAGCTCCCATTTCAGAGGCTAGTGAGGGAAATTGCTCAGGATTTTAAAACAGATCTGAGGTTTTAGAGCAGTGTTGTGGCTGCTCTACAAGAGGCTGCTGAGGCCTACCTTGTTGGGCTCTTTGAAGATACCAATCTCTGTGCAATCCATGCCAAGAGGGTAACTATCATGCCCAAGGATATTCAGCTTGCTAGGAGGCTTCGTGGAGAAAGGGCTTAGGAGTTTTT</genome_strand>
        <mrna_strand>TTCATCTTAGCATACGATCGATATGGCTCGTACCAAGCAAACTGCCCGTAAATCAACTGGTGGAAAGGCTCCAAGGAAGCAGCTAGCCACCAAGGCTGCCAGAAAGTCAGCTCCGGCCACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTGGCTCTAAGAGAAATCAGGAAATACCAAAAGTCAACCGAGTTGTTGATCAGGAAGCTCCCATTTCAGAGGCTAGTGAGGGAAATTGCTCAGGATTTTAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCAGCTCTACAAGAGGCTGCGGAGGCCTACCTTGTTGGGCTCTTTGAAGATACCAATCTTTGTGCAATCCATGCCAAGAGGGTAACTATCATGCCCAAGGATATTCAGCTTGCTAGGAGGATTCGTGGAGAAAGGGCATAAGAATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280180" ref_strand="+" ref_description="SGN-E280180 [cLEL-7-M8](-)">
      <seq>tcctagcaagctgaatatccttgggcatgatggtaaccctctttgcgtggattgcacagagattggtatcttcaaagagcccaacgaggtaagcttcagcagcctcttgtagcgcagccacagcactgctctgaaatctcagatctgtcttgaaatcctgagcgatttccctcactagcctctgaaatggcagcttcctgatcaacagctcggtggacttctggtacttcctgatttctctcagggccacagttcctggcctgaaacggtgaggcttcttcactcctccggtggccggagctgactttctggcagccttgggagctagttgcttccttggagcttccccaccagtggatttgcgggctgtatgcttggtacgagctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="49688" stop="48701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49388" g_stop="48998" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E280180" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49388" e_stop="48998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTAGCAAGCTGAATATCCTTGGGCATGATAGTTACCCTCTTGGCATGGATTGCACAGAGATTGGTATCTTCAAAGAGCCCAACAAGGTAGGCCTCAGCAGCCTCTTGTAGAGCAGCCACAACACTGCTCTAAAACCTCAGATCTGTTTTAAAATCCTGAGCAATTTCCCTCACTAGCCTCTGAAATGGGAGCTTCCTGATCAACAACTCGGTTGACTTTTGGTATTTCCTGATTTCTCTTAGAGCCACAGTTCCTGGCCTGAAACGGTGAGGCTTCTTCACTCCTCCGGTGGCCGCAACTGACTTTCTGGCAGCCTTGGTGGCTAGCTGCTTCCTTGGAGCCTTTCCACCAGTTGATTTACGGGCAGTTTGCTTGGTACGAGCCATATC</genome_strand>
        <mrna_strand>TCCTAGCAAGCTGAATATCCTTGGGCATGATGGTAACCCTCTTTGCGTGGATTGCACAGAGATTGGTATCTTCAAAGAGCCCAACGAGGTAAGCTTCAGCAGCCTCTTGTAGCGCAGCCACAGCACTGCTCTGAAATCTCAGATCTGTCTTGAAATCCTGAGCGATTTCCCTCACTAGCCTCTGAAATGGCAGCTTCCTGATCAACAGCTCGGTGGACTTCTGGTACTTCCTGATTTCTCTCAGGGCCACAGTTCCTGGCCTGAAACGGTGAGGCTTCTTCACTCCTCCGGTGGCCGGAGCTGACTTTCTGGCAGCCTTGGGAGCTAGTTGCTTCCTTGGAGCTTCCCCACCAGTGGATTTGCGGGCTGTATGCTTGGTACGAGCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216150" ref_strand="+" ref_description="SGN-E216150 [cLEL-13-M23](-)">
      <seq>agtaactcaagccagtcctactacatcggaaattcagggtgagctaatgcttctaggtttgactggatcttcttcttcaagtcttgatgccttgaacttccggcatggactagcttcgtatgtatttttagcttcttagaatactcttagtttagtaattttatgatagaggctctggtgatgatgacttccagattttggggaatgataagttttgagttatacaagttgattattgatttttattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="58109" stop="40863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50764" g_stop="50539" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50538" i_stop="50152" i_length="387">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.448" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50151" g_stop="50123" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="252" r_length="29" r_score="0.586"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50122" i_stop="50033" i_length="90">
            <donor d_prob="0.406" d_score="0.00"/>
            <acceptor a_prob="0.212" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50032" g_stop="50020" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="265" r_length="13" r_score="0.615"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E216150" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50764" e_stop="50539"/>
          <exon e_start="50151" e_stop="50123"/>
          <exon e_start="50032" e_stop="50020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTT-TTAGAATACTCTTGGTTTAGTCATTTGATTGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATGATAATAATAGTTTTGAATTGTTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGATATACGTTGAAATGTTAAGGGTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCTCGGATTTGGGTCGTGACATGTCCCAAGGTAAATTATCTTTTAATCCGAGTCTTGAATCTTTTTGATGATTAGGAATTTAGTTATTGTATATTTTTATCTTATGGTTTAGTCACACTCTCCCTTACACTAGTACTTATGCAATTAGGATGGTATTGGATTCTCTGGTCTCACCATCTACTAACCTGCCTGAGTTTAAAAGTTCCAATCTTGAATATACATAAGGCTGCTCAATTTACAAATCTTGTAATAGCATACATATAAATGTTCAGGTCAGGTGAATATTGAAGATTTGTAGCAAGTATATGACTGTAACACTACTTATCCTAATAGATTAAGTTTACTGATTCCATCACTTCTTTTCTTTTGGCATAATATCAATATCATTCAGCAAAGTCAAACAA</genome_strand>
        <mrna_strand>AGTAACTCAAGCCAGTCCTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGGTTTGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCGTATGTATTTTTAGCTTCTTAGAATACTCTTAGTTTAGTAATTTTATGATAGAGGCTCTGGTGATGATGACTTCCAGATTTTGGGGA--ATGAT-A-AGTTTTGAGTTAT...................................................................................................................................................................................................................................................................................................................................................................................................ACAAGTTGATTATTGATTTTTATTAAAAA..........................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="51477" stop="50401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51177" g_stop="50701" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51177" e_stop="50701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACATAGATATAGGGGATCGGAGTGTCACGTACCGACACAAGAGGAATAATGAATA-TGAGGGATCGGAGTGTCACGTACCGACACCAGAGAATTAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAACGAACATAATTCCCAAATGAGTATGGTGTTGAGGCTTGAGCCCTCATGGATGAACTTGATGGTACTTATTGATGATTATAATACTTGTTGTGGCTACATGTTGAGTTTTATAGTTGA-TTTACGATAATA-TT-G-ATATATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTACAGCAAACGTGCCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGA-TATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="52648" stop="53425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52948" g_stop="53124" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52948" e_stop="53124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATCAATGCTTGAGTGATAGTTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="54129" stop="55441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54429" g_stop="55141" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54429" e_stop="55141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTATATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACGCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGCTGTGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="54129" stop="55324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54429" g_stop="55024" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54429" e_stop="55024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTATATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACGCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="54129" stop="55254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54429" g_stop="54954" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54429" e_stop="54954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTATATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACGCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="54200" stop="55478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54500" g_stop="55179" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54500" e_stop="55179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTATATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACGCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGCTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="54200" stop="55158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54500" g_stop="54858" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54500" e_stop="54858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTATATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACGCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="+" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>tgtagtctatgcacattcaaaaactgccgatctttacaacaaaaccggagcaccccaaggagatgcacttggtctaatgaagcctttgttcaataactcttgaagttgtgcctttaactctcttaactctgcgggagccattctataagggggtataaaaatggggcgtgtgcccggttcgagatcaatacagaagtcaatatccctatccggtggcataccaggatgatctgcagggaacacatccataaactcacgaactactgaaactgagtcaatcgaaggtacttgggtagtgttatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatacgcaccggattggaagtgtagtcaccctcctacactaacagatctgtcccaggcttggctaacgtcacggttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcgaagtcaaccatttcttgcaaggattttgccgtagccgctacctgtaacgctgaaatccgcaactctgacctcaaccctttcacaaaacgacgaatcctctcttgtggactgaaacaaagttgagtggcatatctggatagtgcacgaaacttagcctcatatgcattgacctacatcctaccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="54737" stop="56745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55001" g_stop="55511" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55512" i_stop="56255" i_length="744">
            <donor d_prob="0.106" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56256" g_stop="56445" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="694" r_length="190" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E353359" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55001" e_stop="55511"/>
          <exon e_start="56256" e_stop="56445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGCTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACGCACGAACTACTGAAACCGACTCAATCGTAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCCTAGCACAAAGAAAGGAGACGATGCGGACCGGATTGGGAGTGTAGTCACCATCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAATCATACCCAGAATCACGTCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTGGAGACACGAATGGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGGTGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCAACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTTTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAAATCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGC</genome_strand>
        <mrna_strand>TGTAGTCTATGCACATTCAAAAACT-GC--CGATC-T-T-TACAA-CAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAAAAATGGGGCGTGTGCCCGGTTCGAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGATGATCTGCAGGGAACACATCCATAAACTCACGAACTACTGAAACTGAGTCAATCGAAGGTACTTGGGTAGTGTTATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCTACACTAACAGATCTGTCCCAGGCTTGGCTAACGTCACGGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAGTCAACCATTTCTTGCAAGGATTTTGCCGTAGCCGCTACCTGTAACGCTGAAATCCGCAACTCTGACCTCAACCCTTTCACAAAACGACGAATCCTCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCTACATCCTACCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="54718" stop="56079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55018" g_stop="55779" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55018" e_stop="55779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGCTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACGCACGAACTACTGAAACCGACTCAATCGTAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCCTAGCACAAAGAAAGGAGACGATGCGGACCGGATTGGGAGTGTAGTCACCATCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAATCATACCCAGAATCACGTCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTGGAGACACGAATGGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="54718" stop="55978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55018" g_stop="55678" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55018" e_stop="55678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGCTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACGCACGAACTACTGAAACCGACTCAATCGTAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCCTAGCACAAAGAAAGGAGACGATGCGGACCGGATTGGGAGTGTAGTCACCATCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAATCATACCCAGAATCACGTCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTGGAGACACGAATGGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="55328" stop="56486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55628" g_stop="56186" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55628" e_stop="56186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACGAATGGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGGTGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCAACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTTTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAAATCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214046" ref_strand="+" ref_description="SGN-E214046 [cLEC-80-E17]">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaacaagaagattacctgtgatgacagcatcagatgcctccgctttagaccgcccagggaaagcgtaacaatgggccctatagtttgtttgtccattgcccctaccatgtcgtgatgtagtggccccagtttgtccattacctctgccgttttggtgaccaccattgcctcgaccaccacgtcctccaaaataacggcctctaccatgacaacctctacctctaactattgggggtctataacttggtccgggaaaatttctcctaatatgtccaatctccccacatccataacattctctagagtcactcataggcccctcggagaagtgttgaccggtctgaggtggacccccaactacagtttgtagtgaagactgaatgggtcgaactgagtaacctccagaaccttgtcctctagagtaagaacccttaaactcatctcccctttgaaacctcatcgatgtcgatgtcgtggtgaagtcgtctggtttcactccttccacttctatcaaaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaagggcgaaatccgcaattctgacctcaaccccttcacaaccggcgaatccgctcttgagggactgaacagagttgagtggcatatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="55332" stop="56695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55632" g_stop="56395" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E214046" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55632" e_stop="56395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATGGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGGTGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCAACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTTTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAAATCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGA-GGACTGAAACAGAGTTGAGTGGCATATCTGG</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACAAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTTAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATAGTTTGTTTGTCCATTGCCCCTACCATGTCGTGATGTAGTGGCCCCAGTTTGTCCATTACCTCTGCCGTTTTGGTGACCACCATTGCCTCGACCACCACGTCCTCCAAAATAACGGCCTCTACCATGACAACCTCTACCTCTAACTATTGGGGGTCTATAACTTGGTCCGGGAAAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTAGAGTCACTCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTTTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCAGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCATCTCCCCTTTGAAACCTCATCGATGTCGATGTCGTGGTGAAGTCGTCTGGTTTCACTCCTTCCACTTCTATCAAAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGGCGAAATCCGCAATTCTGACCTCAACCCCTTCAC-AACCGGCGAATCCGCTCTTGAGGGACTG-AACAGAGTTGAGTGGCATATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="55412" stop="56801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55712" g_stop="56501" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55712" e_stop="56501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGGTGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCAACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTTTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAAATCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCGATCCCTCAAAGTCCGGGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353805" ref_strand="+" ref_description="SGN-E353805 [cTOS-10-C24]">
      <seq>ggatcaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctaaagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="55414" stop="56547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55714" g_stop="56247" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E353805" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55714" e_stop="56247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGGTGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCAACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTTTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAAATCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</genome_strand>
        <mrna_strand>GGATC-AACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAAAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="55488" stop="56785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55788" g_stop="56485" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55788" e_stop="56485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGGTGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCAACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTTTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAAATCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCGATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="56049" stop="57367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56349" g_stop="57067" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56349" e_stop="57067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCGATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGCAGTAGCTCGTGACAGTCAACTAGAAAATCATAAGCATCCTCAAATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGC-TATTGTACTTCCGGAGCCTGAGGTGCTGGTGCAGAGAACACTGGGGGTGTCTGGCCTTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCGTTTCCTCATTTTGCACTTGTTCAGTTTCCCCAT-CCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGGGGAGTCACTGCCCTAGTATCAGATGGTCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="56052" stop="57314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56352" g_stop="57014" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56352" e_stop="57014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCGATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGCAGTAGCTCGTGACAGTCAACTAGAAAATCATAAGCATCCTCAAATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGC-TATTGTACTTCCGGAGCCTGAGGTGCTGGTGCAGAGAACACTGGGGGTGTCTGGCCTTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCGTTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="56407" stop="57439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56707" g_stop="57138" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56707" e_stop="57138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGC-TATTGTACTTCCGGAGCCTGAGGTGCTGGTGCAGAGAACACTGGGGGTGTCTGGCCTTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCGTTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGGGGAGTCACTGCCCTAGTATCAGATGGTCTAGGTGCTTGTCCTCTCCCTCTAGAGGACGTCCTCCCACAACCTCTTCCACGGCCCCTTGCCGTTGTTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="57730" stop="56845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57430" g_stop="57145" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57430" e_stop="57145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAATAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACATCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="58522" stop="57446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58222" g_stop="57746" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58222" e_stop="57746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACATAGATATAGGGGATCGGAGTGTCACGTACCGACACAAGAGGAATAATGAATA-TGAGGGATCGGAGTGTCACGTACCGACACCAGAGAATTAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAACGAACATAATTCCCAAATGAGTATGGTGTTGAGGCTTGAGCCCTCATGGATGAACTTGATGGTACTTATTGATGATTATAATACTTGTTGTGGCTACATGTTGAGTTTTATAGTTGA-TTTACGATAATA-TT-G-ATATATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTACAGCAAACGTGCCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGA-TATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341740" ref_strand="+" ref_description="SGN-E341740 [cTOF-9-A9]">
      <seq>gaataggattttaataatttttagataaaaaaaagggttctcttcactgtatttcctctttccggccagctcactgccggagcaccatctcccaaaggccaccaccaccaaaaagttggctagaacaattcatatttttcggtgaagctccaaccagccactaaatcgctgctaaactcagcctcgttccttcacgaacagccaaccaaacagatccatgtcctcctttcttcttctcttctccgaccaaacatcgctcaacccaaacttcccttctgttttcagccaacaacaccagaaaaaacctccaaaacccccaccaaaagccatcggaaataaccattaactccgaccataacgttgccaatagaaaatccaaccagatttaaacctcactggtccagcttcgcaaagccacgacgccaaattccggcgaaactagacccaaaaccccaccgcccagtccctttctctccccctttacgattttgttcatcttgtaggtattccggcgaaacttcgaactccgggcagctgcgaaccaacaacaccaagaacttgaaatttcgatgacccttctctctttttcacattgnttgtataaggntatgttgatttttagattccagatgttattgttacttcttgttngttgttatcacttgggattntaaagtttattttttggcacttgcttatgtttccagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="63884" stop="62574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63584" g_stop="62874" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E341740" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63584" e_stop="62874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAGGATTTTAATAATTTTTAGATAAAAAAAAGGGTTCTCTTCACTGTATTTCCTCTTTCCGGCCAGCTCACTGCCGGAGCACCATCTCCCAAAGGCCACCACCACCAAAAAGTTGGCTAGAACAATTCATATTTTTCGGTGAAGCTCCAACCAGCCACTAAATCGCTGCTAAACTCAGCCTCGTTCCTTCACGAACAGCCAACCAAACAGATCCATGTCCTCCTTTCTTCTTCTCTTCTCCGACCAAACATCGCTCAACCCAAACTTCCCTTCTGTTTTCAGCCAACAACACCAGAAAAAACCTCCAAAACCCCCACCAAAAGCCATCGGAAATAACCATTAACTCCGACCATAACGTTGCCAATAGAAAATCCAACCAGATTTAAACCTCACTGGTCCAGCTTCGCAAAGCCACGACGCCAAATTCCGGCGAAACTAGACCCAAAACCCCACCGCCCAGTCCCTTTCTCTCCCCCTTTACGATTTTGTTCATCTTGTAGGTATTCCGGCGAAACTTCGAACTCCGGCAAGCTGCGAACCAACAACACCAAGAACTTGAAATTTCGATGACCCTTCTCTCTTTTTCACATTGTTTGTATAAAGTTATGTTGATTTTTAGATTCCAGATGTTATTGTTACTTCTTGTTGTTTGTTATCAACTTGGGATTTTAAAGTTTATTTTTTGGCACTTGCTTATGTTTCCAGCTT</genome_strand>
        <mrna_strand>GAATAGGATTTTAATAATTTTTAGATAAAAAAAAGGGTTCTCTTCACTGTATTTCCTCTTTCCGGCCAGCTCACTGCCGGAGCACCATCTCCCAAAGGCCACCACCACCAAAAAGTTGGCTAGAACAATTCATATTTTTCGGTGAAGCTCCAACCAGCCACTAAATCGCTGCTAAACTCAGCCTCGTTCCTTCACGAACAGCCAACCAAACAGATCCATGTCCTCCTTTCTTCTTCTCTTCTCCGACCAAACATCGCTCAACCCAAACTTCCCTTCTGTTTTCAGCCAACAACACCAGAAAAAACCTCCAAAACCCCCACCAAAAGCCATCGGAAATAACCATTAACTCCGACCATAACGTTGCCAATAGAAAATCCAACCAGATTTAAACCTCACTGGTCCAGCTTCGCAAAGCCACGACGCCAAATTCCGGCGAAACTAGACCCAAAACCCCACCGCCCAGTCCCTTTCTCTCCCCCTTTACGATTTTGTTCATCTTGTAGGTATTCCGGCGAAACTTCGAACTCCGGGCAGCTGCGAACCAACAACACCAAGAACTTGAAATTTCGATGACCCTTCTCTCTTTTTCACATTGNTTGTATAAGGNTATGTTGATTTTTAGATTCCAGATGTTATTGTTACTTCTTGTTNGTTGTTATC-ACTTGGGATTNTAAAGTTTATTTTTTGGCACTTGCTTATGTTTCCAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293298" ref_strand="+" ref_description="SGN-E293298 [cLET-18-F15]">
      <seq>agaataggattttaataattttgagataaaaaaaagggttctcttcactgtatttcctctttccggccagctcactgccggagcaccatctcccaaaggccaccaccaccaaaaagttggctagaacaattcatatttttcggtgaagctccaaccagccactaaatcgctgctaaactcagcctcgttccttcacgaacagccaaccaaacagatccatgtcctcctttcttcttctcttctccgaccaaacatcgctcaacccaaacttcccttctgttttcagccaacaacaccagaaaaaacctccaaaacccccaccaaaagccatcggaaataaccattaactccgaccataacgttgccaatagaaaatccaaccagatttaaacctcactggtccagcttcgcaaagccacgacgccaaattccggcgaaactagacccaaaaccccaccggccagtccctttctctccccctttacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="63885" stop="62800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63585" g_stop="63100" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E293298" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63585" e_stop="63100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATAGGATTTTAATAATTTTTAGATAAAAAAAAGGGTTCTCTTCACTGTATTTCCTCTTTCCGGCCAGCTCACTGCCGGAGCACCATCTCCCAAAGGCCACCACCACCAAAAAGTTGGCTAGAACAATTCATATTTTTCGGTGAAGCTCCAACCAGCCACTAAATCGCTGCTAAACTCAGCCTCGTTCCTTCACGAACAGCCAACCAAACAGATCCATGTCCTCCTTTCTTCTTCTCTTCTCCGACCAAACATCGCTCAACCCAAACTTCCCTTCTGTTTTCAGCCAACAACACCAGAAAAAACCTCCAAAACCCCCACCAAAAGCCATCGGAAATAACCATTAACTCCGACCATAACGTTGCCAATAGAAAATCCAACCAGATTTAAACCTCACTGGTCCAGCTTCGCAAAGCCACGACGCCAAATTCCGGCGAAACTAGACCCAAAACCCCACCGCCCAGTCCCTTTCTCTCCCCCTTTACG</genome_strand>
        <mrna_strand>AGAATAGGATTTTAATAATTTTGAGATAAAAAAAAGGGTTCTCTTCACTGTATTTCCTCTTTCCGGCCAGCTCACTGCCGGAGCACCATCTCCCAAAGGCCACCACCACCAAAAAGTTGGCTAGAACAATTCATATTTTTCGGTGAAGCTCCAACCAGCCACTAAATCGCTGCTAAACTCAGCCTCGTTCCTTCACGAACAGCCAACCAAACAGATCCATGTCCTCCTTTCTTCTTCTCTTCTCCGACCAAACATCGCTCAACCCAAACTTCCCTTCTGTTTTCAGCCAACAACACCAGAAAAAACCTCCAAAACCCCCACCAAAAGCCATCGGAAATAACCATTAACTCCGACCATAACGTTGCCAATAGAAAATCCAACCAGATTTAAACCTCACTGGTCCAGCTTCGCAAAGCCACGACGCCAAATTCCGGCGAAACTAGACCCAAAACCCCACCGGCCAGTCCCTTTCTCTCCCCCTTTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714131" ref_strand="+" ref_description="SGN-E714131 [FB10CD10]">
      <seq>atctataagcctttcactttagcataaaattgaaatggctcgtaccaagcaaactgcccgcaaatctactggtggaaaggctccaaggaagcaactggtccccaagtctgttttcaagtcagttctaacaagtggaagagtgaagaagcctcaccgttttatgccaggaactgtggctctaagagaaatcaggaagtaccagaaatctactgagttgatgatcaggaagttgccattccagaggctggttaggcaaactgctctggatttcaagagagatctgaggttccagagcagtgctatgactattctataagaggctgctgaggcttacctcgttgggctctttgaagataccaatctttgtgcaattcacgcaaagagggttaccatcatgcccaaggatattcagcttgctagaaggattcgcggagaaagggcttagaaatctttttttatgtttatgattaatttgtgttttgtattggggtcttgtttacttcttctgttaaatgctagtgtcaatcaaattatgtaaacctctggtttagttctattctgagatctggttaatgaaatttatagttcattttatttcaattgaagatgctacccatactataattcagagtatattttgagttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="70565" stop="69320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70265" g_stop="69621" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E714131" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70265" e_stop="69621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATAAGCCTTTCACTTTAGCATAAAATTGAAATGGCTCGTACCAAGCAAACTGCCCGCAAATCTACTGGTGGAAAGGCTCCAAGGAAGCAACTGGTCCCCAAGTCTGTTTTCAAGTCAGTTCTAACAAGTGGAAGAGTGAAGAAGCCTCACCGTTTTATGCCAGGAACTGTGGCTCTAAGAGAAATCAGGAAGTACCAGAAATCTACTGAGTTGATGATCAGGAAGTTGCCATTCCAGAGGCTGGTTAGGCAAACTGCTCTGGATTTCAAGAGAGATCTGAGGTTCCAGAGCAGTGCTATGACTATTCTATAAGAGGCTGCTGAGGCTTACCTCGTTGGGCTCTTTGAAGATACCAATCTTTGTGCAATTCACGCAAAGAGGGTTACCATCATGCCCAAGGATATTCAGCTTGCTAGAAGGATTCGCGGAGAAAGGGCTTAGAAATCTTTTTTTATGTTTATGATTAATTTGTGTTTTGTATTGGGGTCTTGTTTACTTCTTCTGTTAAATGCTAGTGTCAATCAAATTATGTAAACCTCTGGTTTAGTTCTATTCTGAGATCTGGTTAATGAAATTTATAGTTCATTTTATTTCAATTGAAGATGCTACCCATACTATAATTCAGAGTATATTTTGAGTTA</genome_strand>
        <mrna_strand>ATCTATAAGCCTTTCACTTTAGCATAAAATTGAAATGGCTCGTACCAAGCAAACTGCCCGCAAATCTACTGGTGGAAAGGCTCCAAGGAAGCAACTGGTCCCCAAGTCTGTTTTCAAGTCAGTTCTAACAAGTGGAAGAGTGAAGAAGCCTCACCGTTTTATGCCAGGAACTGTGGCTCTAAGAGAAATCAGGAAGTACCAGAAATCTACTGAGTTGATGATCAGGAAGTTGCCATTCCAGAGGCTGGTTAGGCAAACTGCTCTGGATTTCAAGAGAGATCTGAGGTTCCAGAGCAGTGCTATGACTATTCTATAAGAGGCTGCTGAGGCTTACCTCGTTGGGCTCTTTGAAGATACCAATCTTTGTGCAATTCACGCAAAGAGGGTTACCATCATGCCCAAGGATATTCAGCTTGCTAGAAGGATTCGCGGAGAAAGGGCTTAGAAATCTTTTTTTATGTTTATGATTAATTTGTGTTTTGTATTGGGGTCTTGTTTACTTCTTCTGTTAAATGCTAGTGTCAATCAAATTATGTAAACCTCTGGTTTAGTTCTATTCTGAGATCTGGTTAATGAAATTTATAGTTCATTTTATTTCAATTGAAGATGCTACCCATACTATAATTCAGAGTATATTTTGAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412629" ref_strand="+" ref_description="SGN-E412629 [STM-16-H11]">
      <seq>tttcaatttagcataaaatcaaaatggctcgtaccaagcaaactgcccgcaaatccactggtggaaaggctccaaggaagcaactggccaccaaggctgccagaaagtcagctccggccaccggaggagtgaagaagcctcaccgtttcaggccaggaactgtggctctaagagaaatcaggaagtaccagaagtctactgagttgttgatcaggaagttgccatttcagaggctggttagggaaattgctcaggatttcaagacagatctgaggtttcagagcagtgctgtggctgctctacaagaggctgctgaggcttacctcgttgggctctttgaagataccaatctctgtgcaatccacgcaaagagggttaccattatgcccaaggatattcagcttgctaggaggattcgaggagaaagggcttaggaatcttcttttatgtttatggttaatgtgtgttttgtattagggctttgtttgtttcttctgttgaatgatagtgtaaatcaaattatgtaaacctctggtttagtactattttgagatctggttagtgaaatctgtagttcattttgtttcaattgaaggtgctgcccatactatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="70554" stop="69341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70254" g_stop="69641" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E412629" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E412629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70254" e_stop="69641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACTTTAGCATAAAATTGAAATGGCTCGTACCAAGCAAACTGCCCGCAAATCTACTGGTGGAAAGGCTCCAAGGAAGCAACTGGTCCCCAAGTCTGTTTTCAAGTCAGTTCTAACAAGTGGAAGAGTGAAGAAGCCTCACCGTTTTATGCCAGGAACTGTGGCTCTAAGAGAAATCAGGAAGTACCAGAAATCTACTGAGTTGATGATCAGGAAGTTGCCATTCCAGAGGCTGGTTAGGCAAACTGCTCTGGATTTCAAGAGAGATCTGAGGTTCCAGAGCAGTGCTATGACTATTCTATAAGAGGCTGCTGAGGCTTACCTCGTTGGGCTCTTTGAAGATACCAATCTTTGTGCAATTCACGCAAAGAGGGTTACCATCATGCCCAAGGATATTCAGCTTGCTAGAAGGATTCGCGGAGAAAGGGCTTAGAAATCTTTTTTTATGTTTATGATTAATTTGTGTTTTGTATTGGGGTCTTGTTTACTTCTTCTGTTAAATGCTAGTGTCAATCAAATTATGTAAACCTCTGGTTTAGTTCTATTCTGAGATCTGGTTAATGAAATTTATAGTTCATTTTATTTCAATTGAAGATGCTACCCATACTATAAT</genome_strand>
        <mrna_strand>TTTCAATTTAGCATAAAATCAAAATGGCTCGTACCAAGCAAACTGCCCGCAAATCCACTGGTGGAAAGGCTCCAAGGAAGCAACTGGCCACCAAGGCTGCCAGAAAGTCAGCTCCGGCCACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTGGCTCTAAGAGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGTTGCCATTTCAGAGGCTGGTTAGGGAAATTGCTCAGGATTTCAAGACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGGCTCTTTGAAGATACCAATCTCTGTGCAATCCACGCAAAGAGGGTTACCATTATGCCCAAGGATATTCAGCTTGCTAGGAGGATTCGAGGAGAAAGGGCTTAGGAATCTTCTTTTATGTTTATGGTTAATGTGTGTTTTGTATTAGGGCTTTGTTTGTTTCTTCTGTTGAATGATAGTGTAAATCAAATTATGTAAACCTCTGGTTTAGTACTATTTTGAGATCTGGTTAGTGAAATCTGTAGTTCATTTTGTTTCAATTGAAGGTGCTGCCCATACTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346281" ref_strand="+" ref_description="SGN-E346281 [cTOF-23-J11]">
      <seq>atatataataatcttaaattccggtgttgccttatttggtctttgaaaatttgatttgaagcttcaaaattcaactttcaacttttcacgttcggctttcggcggtcataaacgtctacttttttaagtagacgttcgaacctactgaagatattctagcatgctggagaaatcgcggcaaaggatttccaaaactacaaccgatggctcgagaatatattagcaatgcaagcgtcgtcagtagcttcggaaggcgtctttagtgcagcaaggtttcaacttggagaacatagacattcattagcagccgacagcttggatatatcggtattattttgagcttggattaatgccgagagaagaaatttgagtcgtgaaccaccaccgaccaaatttcaagatgacgttgatgaagtaatgttggattatagtgacgacgagattgaagtaatggaaaatctttctattcaaccaattcccgaacatgttactaaggaaatgttgaatgatttacgaagagatttatatggtggcacgaactattagtaaaagtatgataattcgagatttaattcaaacagaacccttcctagaaggtgggctgtgtaaattaaatcttttaatactctactaatatttttgtaaatgtaattgtaatatcaaataaatattaataaaaatataggctattcgccttaatttattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="78298" stop="74786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77998" g_stop="77875" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77874" i_stop="76461" i_length="1414">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.772" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76460" g_stop="76449" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="138" r_length="13" r_score="0.583"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76448" i_stop="75650" i_length="799">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.693" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75649" g_stop="75086" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="708" r_length="570" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E346281" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77998" e_stop="77875"/>
          <exon e_start="76460" e_stop="76449"/>
          <exon e_start="75649" e_stop="75086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATAAT-ATTTTAAATTCCAGTGTTCCCTTATTTAGTCTTTGGAAATTAGATTTGGAGCTTCAAAATTCAATTTTCAACTTTCCACGTTCGGCTTTCGGCGGTCATAAACGTCTACTTTTCGGTACATTTGTTTCAACTTTTATTTTACGTTTAATTTATATTTAAATAATTATTTATTTATTTTGTGATTTATTATTTGCATTACATTTTTCGTATTATATATAATCTCACGTTTAATTTTTTAATATGGATTTCGATAAAAATATTGTTCAAAAAGGAAAAGAGAAAAAAAGTGCAATAGAGCGTGTAAAAAATATTTGTAACTTTACATCCTCCGATAATGCAAAAATCGATAGTTCTTCTAAATCAAAAACTAAAAAATCTACTATATTAAGAATAAATACAGATGATTATACACATGTTGATGATACGGTTTTTAATATCGATAGTAATTCATGATTAGATCCTTATCATGAACATTTACAACGTTGTTTTGATAATTTTGATGAGAATTTGCCTAGTGATAATGATAATGATAATGATATTGATAATTATACTAATACGCCTACTTTTGATGATGATGATGATGAAACTGAGCCACCTACGGCTACTAATACTCCCAGTCTTGCTCCCTTTTGTTGTCTTGCCCCTGTTCCCCCAGTACACCCTAGGCCTAAGGTAGAACGTGTTAAAAAATCGATTGTTTGGCAATTTATGACACAAAACGAAGATAAAACACAAGCTATTTGTAATAAATGTAAACATAGATTAAATCATAAAATTGTTGGTAAATCTGGCGGGACGAGACATTTGAGTAGTCATTTAATGTCTTGTTGTAAAAATGAATTTTTGCATGCTAAAGCGGTAGCAAAGCTAAAAAAAAATGGTACCCCCTTCTTGAAAATGTAGGAGTAGGCGTCTCTAACATGGTACAAACACAATTAAATCTGTATAATGTTTTTGGCTCTAGTTTACCACTTTCATATAGTAGAGAAAAAGATCTTCAAGAACTAGCTAAAATGATATGTGTTATGAGTTTCCCATTTAGTTTTGCTGAAAATTTCAATTTTATACATTATATTCAAATTGTATATAATCCAAATTTTAAAGGTTTTGCTAGAAATACAATAAAAAATGATGTATTTGATTATCATGCACCACATTTTCAATATCTTCGTCGTTTATTCAATTATAATACTTGTAAAATAGCTATTACTTCTGATATGGGTCATAGTGTAAGTGGTAACGATTATTTGACTATTACTGCAAATTGGATTGATGAAAATTGGTATATGCAAAAAAGAATTTTTGGTTATAAATATTGTCAAATGTAAAAAACTGGTAGTTATATTGCTCAAACTATTTTTAGATGTTTTACAAAGTTATGAAATATGTGATAAAATAAGTAGTATAACCTTAGATAATGCTTCAAGTAATAAAGTTGTTGTTGAATATTTAAAACCTATTCTCTGTCCTTTCTATGGTGATAATTATCATATTATGTGTACTGCACATATATATAATTTGATGGTTAG-AGATGACGTACGGATGTATGATAACGAATGTACGAAAGTTGAAAATGTATGTCATTTTATATTTAAATGTCAAGTTAAGTCTAGGCGTAAAGATTTTCAAAATTGTTGTTTTGACAATAATCTTCCACCTAGAAAAATTCCAAAAACAGTAGCTACTAGATGGAATACTTTATATGAAATGCATCTAGTCACTCGTGAATTTAAAAAACCCTTACAAATGGTTTCGAATGCTTATAATTCTGATATGACATATAAACTAGATGATAGTGATTGACGTGATATAAATGAAGTTATAGATTTTCTAAAAGTTTTTTACTTAACTACAAAAGAATATTTGTACTTTATAGTCCATTAATTTGTATTGTTTTGCCTGATATTTGTAGGATTTCTTCTAAATTATATCAGTTTAATAATAAACGAAGATTTCAACAAACCATTGAAAAAATGATTCTAAAATTTAAAAAATATTATATTTCTATTCCTCAAATTTATTTAACCGCGTGTTTGTTAAACTCTCATTATAAAGATGTAGGTGCATCAAAAATGGTTGAAAAAATGTATTTTAACTTAGATATTAATGATGTATTAGAAGAAATTCCTAGTTGTCAACAAGTTAAAGATAGCATAAAAATTGAAGCTAGAAAATTGTATGATTTATATAATGCTAATATAAATTTATCAAGTGAATATGAACTTCAAAACTCTAGGGTTAGATTTGATGAAAATAATATTGATGATTATTTACATGATTATCTTGAACTTTCTCACGATAATAGAAATGATTTTGATGCCTATGTTACTCAAAATACAGAACCTACTGAAGATATTCTCCAATGGTGGAGAAATCGCGGCAAAGGATTTCCAAAACTAGTACCGATGGCTCGAG-ATATATTAGCAATGCAAGCGTCGTCGGTAGCTTCGGAAGGCGTCTTTAGTACATCAAGG-TTCAACTTGGAGAACATAGGCATTCGCTAGCAGCCGACAACTTGGAGATATCTGTATTATTTCGATATTGGATTAATGTCGAGAGAAGAAATTTGGGTCGTGAACCACTACCGACCAAATTTCAAGATGACGTTGATGAAGTAATGCAGGATTATAGTTACAACGGGATTGAAGCAATGGAAGATCTTTTTATTCAACCAATTCCCGAACATGTTACTAAAGAAATTTTGAATGATTTATGAAGGGATTTATATGGTGGCACCAACTATTAGTAAAAGTATGATAATTCAAGATTTAATTCAAACAGAACTCTTCCTAGAAGGT-GGTTGTGTAGATTAAATCTTTTAATACTTTATTAATATTTTTGTAAATGTAATTATAATATCAAATAAATATTAATAAAGAT-T--GCTATTCGCCTTAATTTGTTTTT</genome_strand>
        <mrna_strand>ATATATAATAATCTTAAATTCCGGTGTTGCCTTATTTGGTCTTTGAAAATTTGATTTGAAGCTTCAAAATTCAACTTTCAACTTTTCACGTTCGGCTTTCGGCGGTCATAAACGTCTACTTTTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTAGACGTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTACTGAAGATATTCTAGCATGCTGGAGAAATCGCGGCAAAGGATTTCCAAAACTACAACCGATGGCTCGAGAATATATTAGCAATGCAAGCGTCGTCAGTAGCTTCGGAAGGCGTCTTTAGTGCAGCAAGGTTTCAACTTGGAGAACATAGACATTCATTAGCAGCCGACAGCTTGGATATATCGGTATTATTTTGAGCTTGGATTAATGCCGAGAGAAGAAATTTGAGTCGTGAACCACCACCGACCAAATTTCAAGATGACGTTGATGAAGTAATGTTGGATTATAGTGACGACGAGATTGAAGTAATGGAAAATCTTTCTATTCAACCAATTCCCGAACATGTTACTAAGGAAATGTTGAATGATTTACGAAGAGATTTATATGGTGGCACGAACTATTAGTAAAAGTATGATAATTCGAGATTTAATTCAAACAGAACCCTTCCTAGAAGGTGGGCTGTGTAAATTAAATCTTTTAATACTCTACTAATATTTTTGTAAATGTAATTGTAATATCAAATAAATATTAATAAAAATATAGGCTATTCGCCTTAATTTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419067" ref_strand="+" ref_description="SGN-E419067 [STM-28-L14]">
      <seq>tttttctctctccgacgaggttaattggggataaaaatggccgggaaatcaaacaaagggaagaatcggaaggcagttcaaaatgctaccagttcttcagagcaagcagccccacctgatgctaatgtgaatgatactgcaacgcatgcggagtctaatggaaccacagttgtgactgggggaactgatacaaaaacagaggcaaaggagtctggaaatgagacctccacacaggaggcaaagcaaggtgacatccatctttatcctgtttctgtcaaaacccaaggaggggataagctagatctacagttgagtcctggtgattctgttatggatgtgcggcagattcttcttgatgctccagagacatgcttcggtgcatgctgtgatctatcgtggcgtgtaaaggatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="81839" stop="84908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82139" g_stop="82165" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82166" i_stop="82665" i_length="500">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82666" g_stop="82885" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="247" r_length="220" r_score="0.932"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82886" i_stop="84015" i_length="1130">
            <donor d_prob="0.979" d_score="0.94"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84016" g_stop="84077" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="309" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84078" i_stop="84517" i_length="440">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.874" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84518" g_stop="84622" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="414" r_length="105" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E419067" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82139" e_stop="82165"/>
          <exon e_start="82666" e_stop="82885"/>
          <exon e_start="84016" e_stop="84077"/>
          <exon e_start="84518" e_stop="84622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTCTCCGACGAAGTCAATTTGTATGCTTCTATTTCACCTTTTGCTTGTTACGTCTCTCTAATTCAGTGAAATAGGGTATTGTTTTTGCTATTGTTGAATGTTAAAAACATTTTTTTTTTAGTGAATTGGTGCTTGTGATTATTGAATTGTTAATGAACATGTTATTGCTATTTTATGTTTTGATTTTTATACTCCAGTGAATTAATAATGTTATGAGCTCATTAGGTAGATTGAGTTAGTAATCTTTTTGAAAATTGTTTGTCTATTTCTTCACATTATGTATAATGAGTTACTACTTTCAAGTGTTACTCTTTTTGACTATTTAAGAGTATTCCTAGAGTAATTGAGGTTATGCGATTAGTTTGTTTATTGGGTTGTTTGTATTTAGATGCTTAGAGTTTGTAGTTTTTCAATCTAAAGATTAATTATAATCATTTTATCTGGATTTAGGTCACAAAGTACTTGAGAAAGAAACTTTTATTTGATTCTTGGATTAAACGACTGATTATGTATATTTCAGGGGATAAGAATGGCCGGGAAGTCAAACAAAGGGAAGAATCGGAAGGCAGTTCAAAATGCTACTAGTTCTTCAGAGCAAGCAGCGCCACCTGATGCTAATGTGAATGATACTGCAACACATGCGGAGTCTAATGGAACCACAGCTGTGACTGCTCAAGCTGATACGAAAACAGAAGCAAAAGAATCTGGAAATGAGACCTCCACACAGGAGGCAAAGCAAGGTGAAACTTGGCAATATCAAAGTTTGATTTAAATATGTAAATAACTCATCACACCCGTCACACCCTAGGATGTGACGTAGTGGACGGTCAATTAAGTGGGTCTTGACATGTAGAGACAATAAAAATCAGGTGATTCCTACCTGGTACATTTGGATTTAGAACATTAACCATTTTTGCTAATCATTTACTCCCAGTTGAGTTTAGAGTCTAGACATTCTCCCTTGGATTTCTGCTCTGTCTCCTTTATTGCCAAAGAGACGAGTGCTGGTTTTACAAATTGGTGGCTTACTTGTTTGGGACTGTGCTGCTATTGGAATCAGTATCAGCATTTTTTGGTTTCAGCTATTCATGTAGTTGGAAATTCCCAGTATTAAGTTGTATACAAAAGGTCACACAGTTATCTATACTGATTGAAACCTCATGGATGCACCAAAAGCTTATCAAATATGGAAGACAAGCCTTCATCTGTTGTTTCAGCTTTCAACTTATCCAAAAAAGAAAGAAAAAACCAAGAGAACCTGATTTTTTCAATGTTGCAGGATCAAGCTGTAGATGGTCAGTCGCAAGGTCTATTGTGTAATATGTGAATGCAATCTGTTTGCTATGTTCTTTCACTATATTCTTGTTGGATAAGTTTCCATGACCCCTTTAATAATCCGGTAAAGCATATGCAGCAAACGGTAATACTTATGTCACCACACATGTCTGTTTGGTGATTCTTGAAGTATAAGATCTTACTTATTACAGTGGCTAGTGTATTCCATACATGATGTGCCTCCTTCTGTCATGAGCCATGAAATTTGTTGTTTTATTCTAGATCTGCCATATGTCTGTTTTTGAATTCAGAGCAATGTACAATGCTAGCCTCATAACAACATTTCTTCACGTGTGTATTATTCTCGTCGAACTATCTCTGTTTTTCTGCCTATGTATTTGTTGGTTCATGTAGATGCCACATGTATCAAACTCATACTAATTGAGTATAGGTTCTCTTCCAGTTTTACTTTCCCATATTACTTGAAGATAACGGTCTTACATTCTTGTATGGATTTTGTTTAATGGTCTAAATTTCTTTCTAATTCAGAAACTGGATGAAATGAAGAGCCTTTCTGCCTTAATCTATTTTGCAGGTGACATCCATCTTTATCCTGTTTCTGTCAAAACCCAAGGAGGGGATAAGCTAGAACTACAGGTAAGATGTGTTTCTAATTTTATTGGCTTTATTTTTTGTTGATAGTTTTGTTAGAAAACTTGTTTTTTCTTTATCATTCTCCTTCATCCTTCAGATTTAAGAGAGTGGCTAAAATTCTTCCATTGCATGCAATTGCATACATGTGTAGTCTTATTAGTATGTGCCATCACTCACACGCTTCTTTTATTTTAGATCTGGATTGTCAATACTGAAAAACTATTCTTTCTCTTTGTTTTTATATTTTATATCTGGATTGTCAATCATTAAAAGCCACTCGTCCTCTTTTGATTTTGACTTTCTGAACTTGTCATTTCTTATCCTGCCTTCCATATGTGTAGATGTTTATCTTTAGGCATTTAGGACCAACTTATACATAAATATTTGTGATTCTCGTGCGTTAGTCTGTCTAATTTGGAGTTTCTGATGGTTACGTGTTTCAGTTGAGTCCTGGTGATTCTGTTATGGATGTGCGGCAGTTTCTTCTTGATGCTCCAGAGACATGCTTCGTTACATGCTATGATCTATCATTGCACATAAAGGACGGA</genome_strand>
        <mrna_strand>TTTTTCTCTCTCCGACGAGGTTAATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATAAAAATGGCCGGGAAATCAAACAAAGGGAAGAATCGGAAGGCAGTTCAAAATGCTACCAGTTCTTCAGAGCAAGCAGCCCCACCTGATGCTAATGTGAATGATACTGCAACGCATGCGGAGTCTAATGGAACCACAGTTGTGACTGGGGGAACTGATACAAAAACAGAGGCAAAGGAGTCTGGAAATGAGACCTCCACACAGGAGGCAAAGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACATCCATCTTTATCCTGTTTCTGTCAAAACCCAAGGAGGGGATAAGCTAGATCTACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTCCTGGTGATTCTGTTATGGATGTGCGGCAGATTCTTCTTGATGCTCCAGAGACATGCTTCGGTGCATGCTGTGATCTATCGTGGCGTGTAAAGGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443403" ref_strand="+" ref_description="SGN-E443403 [cSTA-37-B2]">
      <seq>tttttctctctccgacgaaggtaatttgggataaaaatggccgggaaatcaaacaaagggaagaatcggaaggcagttcaaaatgctaccagttcttcatagcaagcagccccacctgatgctaatgtgaatgatactgcaacgcatgcggagtctaatggaaccacagttgtgactgctcaaactgatacaaaaacagaggcaaaggagtctggaaatgagaccttcacacaggaggcaaagcaaggtgacatccatctttatcctgtttctgtcaaaacccaaggaggggataagctagatctacagttgagtcctggtgattctgttatggatgtgcggcaggatcttcttgatgctccagagacatgcttcgttacatgctatgatctatcgatgcatataaaggatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="81839" stop="84921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82139" g_stop="82165" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82166" i_stop="82665" i_length="500">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82666" g_stop="82885" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="247" r_length="220" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82886" i_stop="84015" i_length="1130">
            <donor d_prob="0.979" d_score="0.92"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84016" g_stop="84077" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="309" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84078" i_stop="84517" i_length="440">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.874" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84518" g_stop="84621" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="413" r_length="104" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E443403" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82139" e_stop="82165"/>
          <exon e_start="82666" e_stop="82885"/>
          <exon e_start="84016" e_stop="84077"/>
          <exon e_start="84518" e_stop="84621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTCTCCGACGAAGTCAATTTGTATGCTTCTATTTCACCTTTTGCTTGTTACGTCTCTCTAATTCAGTGAAATAGGGTATTGTTTTTGCTATTGTTGAATGTTAAAAACATTTTTTTTTTAGTGAATTGGTGCTTGTGATTATTGAATTGTTAATGAACATGTTATTGCTATTTTATGTTTTGATTTTTATACTCCAGTGAATTAATAATGTTATGAGCTCATTAGGTAGATTGAGTTAGTAATCTTTTTGAAAATTGTTTGTCTATTTCTTCACATTATGTATAATGAGTTACTACTTTCAAGTGTTACTCTTTTTGACTATTTAAGAGTATTCCTAGAGTAATTGAGGTTATGCGATTAGTTTGTTTATTGGGTTGTTTGTATTTAGATGCTTAGAGTTTGTAGTTTTTCAATCTAAAGATTAATTATAATCATTTTATCTGGATTTAGGTCACAAAGTACTTGAGAAAGAAACTTTTATTTGATTCTTGGATTAAACGACTGATTATGTATATTTCAGGGGATAAGAATGGCCGGGAAGTCAAACAAAGGGAAGAATCGGAAGGCAGTTCAAAATGCTACTAGTTCTTCAGAGCAAGCAGCGCCACCTGATGCTAATGTGAATGATACTGCAACACATGCGGAGTCTAATGGAACCACAGCTGTGACTGCTCAAGCTGATACGAAAACAGAAGCAAAAGAATCTGGAAATGAGACCTCCACACAGGAGGCAAAGCAAGGTGAAACTTGGCAATATCAAAGTTTGATTTAAATATGTAAATAACTCATCACACCCGTCACACCCTAGGATGTGACGTAGTGGACGGTCAATTAAGTGGGTCTTGACATGTAGAGACAATAAAAATCAGGTGATTCCTACCTGGTACATTTGGATTTAGAACATTAACCATTTTTGCTAATCATTTACTCCCAGTTGAGTTTAGAGTCTAGACATTCTCCCTTGGATTTCTGCTCTGTCTCCTTTATTGCCAAAGAGACGAGTGCTGGTTTTACAAATTGGTGGCTTACTTGTTTGGGACTGTGCTGCTATTGGAATCAGTATCAGCATTTTTTGGTTTCAGCTATTCATGTAGTTGGAAATTCCCAGTATTAAGTTGTATACAAAAGGTCACACAGTTATCTATACTGATTGAAACCTCATGGATGCACCAAAAGCTTATCAAATATGGAAGACAAGCCTTCATCTGTTGTTTCAGCTTTCAACTTATCCAAAAAAGAAAGAAAAAACCAAGAGAACCTGATTTTTTCAATGTTGCAGGATCAAGCTGTAGATGGTCAGTCGCAAGGTCTATTGTGTAATATGTGAATGCAATCTGTTTGCTATGTTCTTTCACTATATTCTTGTTGGATAAGTTTCCATGACCCCTTTAATAATCCGGTAAAGCATATGCAGCAAACGGTAATACTTATGTCACCACACATGTCTGTTTGGTGATTCTTGAAGTATAAGATCTTACTTATTACAGTGGCTAGTGTATTCCATACATGATGTGCCTCCTTCTGTCATGAGCCATGAAATTTGTTGTTTTATTCTAGATCTGCCATATGTCTGTTTTTGAATTCAGAGCAATGTACAATGCTAGCCTCATAACAACATTTCTTCACGTGTGTATTATTCTCGTCGAACTATCTCTGTTTTTCTGCCTATGTATTTGTTGGTTCATGTAGATGCCACATGTATCAAACTCATACTAATTGAGTATAGGTTCTCTTCCAGTTTTACTTTCCCATATTACTTGAAGATAACGGTCTTACATTCTTGTATGGATTTTGTTTAATGGTCTAAATTTCTTTCTAATTCAGAAACTGGATGAAATGAAGAGCCTTTCTGCCTTAATCTATTTTGCAGGTGACATCCATCTTTATCCTGTTTCTGTCAAAACCCAAGGAGGGGATAAGCTAGAACTACAGGTAAGATGTGTTTCTAATTTTATTGGCTTTATTTTTTGTTGATAGTTTTGTTAGAAAACTTGTTTTTTCTTTATCATTCTCCTTCATCCTTCAGATTTAAGAGAGTGGCTAAAATTCTTCCATTGCATGCAATTGCATACATGTGTAGTCTTATTAGTATGTGCCATCACTCACACGCTTCTTTTATTTTAGATCTGGATTGTCAATACTGAAAAACTATTCTTTCTCTTTGTTTTTATATTTTATATCTGGATTGTCAATCATTAAAAGCCACTCGTCCTCTTTTGATTTTGACTTTCTGAACTTGTCATTTCTTATCCTGCCTTCCATATGTGTAGATGTTTATCTTTAGGCATTTAGGACCAACTTATACATAAATATTTGTGATTCTCGTGCGTTAGTCTGTCTAATTTGGAGTTTCTGATGGTTACGTGTTTCAGTTGAGTCCTGGTGATTCTGTTATGGATGTGCGGCAGTTTCTTCTTGATGCTCCAGAGACATGCTTCGTTACATGCTATGATCTATCATTGCACATAAAGGACGG</genome_strand>
        <mrna_strand>TTTTTCTCTCTCCGACGAAGGTAATTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATAAAAATGGCCGGGAAATCAAACAAAGGGAAGAATCGGAAGGCAGTTCAAAATGCTACCAGTTCTTCATAGCAAGCAGCCCCACCTGATGCTAATGTGAATGATACTGCAACGCATGCGGAGTCTAATGGAACCACAGTTGTGACTGCTCAAACTGATACAAAAACAGAGGCAAAGGAGTCTGGAAATGAGACCTTCACACAGGAGGCAAAGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACATCCATCTTTATCCTGTTTCTGTCAAAACCCAAGGAGGGGATAAGCTAGATCTACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTCCTGGTGATTCTGTTATGGATGTGCGGCAGGATCTTCTTGATGCTCCAGAGACATGCTTCGTTACATGCTATGATCTATCGATGCATATAAAGGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557815" ref_strand="+" ref_description="SGN-E557815 [16673]">
      <seq>gttaatttgggataaaaatggccgggaaatcaaacaaagggaagaatcggaaggcagttcaaaatgctaccagttcttcagagcaagcagccccacctgatgctaatgtgaatgatactgcaacgcatgcggagtctaatggaaccacagttgtgactgctcaaactgatacaaaaacagaggcaaaggagtctggaaatgagacctccacacaggaggcaaagcaaggtgacatccatctttatcctgtttctgtcaaaacccaaggaggggataagctagatctacagttgagtcctggtgattctgttatggatgtgcggcagtttcttcttgatgctccagagacatgcttcgttacatgctatgatctatcgttgcatataaaggatgggtctgtttcatcatctagaagattataacgaaatctctgaagtagctgatatcaccacaggagattgcttcctggagattgtgcagcattgtatgatgatcgatccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="82366" stop="85253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82666" g_stop="82885" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="228" r_length="220" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82886" i_stop="84015" i_length="1130">
            <donor d_prob="0.979" d_score="0.94"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84016" g_stop="84077" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="290" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84078" i_stop="84517" i_length="440">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84518" g_stop="84707" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="480" r_length="190" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84708" i_stop="84930" i_length="223">
            <donor d_prob="0.968" d_score="0.96"/>
            <acceptor a_prob="0.608" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84931" g_stop="84953" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="503" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E557815" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82666" e_stop="82885"/>
          <exon e_start="84016" e_stop="84077"/>
          <exon e_start="84518" e_stop="84707"/>
          <exon e_start="84931" e_stop="84953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATAAGAATGGCCGGGAAGTCAAACAAAGGGAAGAATCGGAAGGCAGTTCAAAATGCTACTAGTTCTTCAGAGCAAGCAGCGCCACCTGATGCTAATGTGAATGATACTGCAACACATGCGGAGTCTAATGGAACCACAGCTGTGACTGCTCAAGCTGATACGAAAACAGAAGCAAAAGAATCTGGAAATGAGACCTCCACACAGGAGGCAAAGCAAGGTGAAACTTGGCAATATCAAAGTTTGATTTAAATATGTAAATAACTCATCACACCCGTCACACCCTAGGATGTGACGTAGTGGACGGTCAATTAAGTGGGTCTTGACATGTAGAGACAATAAAAATCAGGTGATTCCTACCTGGTACATTTGGATTTAGAACATTAACCATTTTTGCTAATCATTTACTCCCAGTTGAGTTTAGAGTCTAGACATTCTCCCTTGGATTTCTGCTCTGTCTCCTTTATTGCCAAAGAGACGAGTGCTGGTTTTACAAATTGGTGGCTTACTTGTTTGGGACTGTGCTGCTATTGGAATCAGTATCAGCATTTTTTGGTTTCAGCTATTCATGTAGTTGGAAATTCCCAGTATTAAGTTGTATACAAAAGGTCACACAGTTATCTATACTGATTGAAACCTCATGGATGCACCAAAAGCTTATCAAATATGGAAGACAAGCCTTCATCTGTTGTTTCAGCTTTCAACTTATCCAAAAAAGAAAGAAAAAACCAAGAGAACCTGATTTTTTCAATGTTGCAGGATCAAGCTGTAGATGGTCAGTCGCAAGGTCTATTGTGTAATATGTGAATGCAATCTGTTTGCTATGTTCTTTCACTATATTCTTGTTGGATAAGTTTCCATGACCCCTTTAATAATCCGGTAAAGCATATGCAGCAAACGGTAATACTTATGTCACCACACATGTCTGTTTGGTGATTCTTGAAGTATAAGATCTTACTTATTACAGTGGCTAGTGTATTCCATACATGATGTGCCTCCTTCTGTCATGAGCCATGAAATTTGTTGTTTTATTCTAGATCTGCCATATGTCTGTTTTTGAATTCAGAGCAATGTACAATGCTAGCCTCATAACAACATTTCTTCACGTGTGTATTATTCTCGTCGAACTATCTCTGTTTTTCTGCCTATGTATTTGTTGGTTCATGTAGATGCCACATGTATCAAACTCATACTAATTGAGTATAGGTTCTCTTCCAGTTTTACTTTCCCATATTACTTGAAGATAACGGTCTTACATTCTTGTATGGATTTTGTTTAATGGTCTAAATTTCTTTCTAATTCAGAAACTGGATGAAATGAAGAGCCTTTCTGCCTTAATCTATTTTGCAGGTGACATCCATCTTTATCCTGTTTCTGTCAAAACCCAAGGAGGGGATAAGCTAGAACTACAGGTAAGATGTGTTTCTAATTTTATTGGCTTTATTTTTTGTTGATAGTTTTGTTAGAAAACTTGTTTTTTCTTTATCATTCTCCTTCATCCTTCAGATTTAAGAGAGTGGCTAAAATTCTTCCATTGCATGCAATTGCATACATGTGTAGTCTTATTAGTATGTGCCATCACTCACACGCTTCTTTTATTTTAGATCTGGATTGTCAATACTGAAAAACTATTCTTTCTCTTTGTTTTTATATTTTATATCTGGATTGTCAATCATTAAAAGCCACTCGTCCTCTTTTGATTTTGACTTTCTGAACTTGTCATTTCTTATCCTGCCTTCCATATGTGTAGATGTTTATCTTTAGGCATTTAGGACCAACTTATACATAAATATTTGTGATTCTCGTGCGTTAGTCTGTCTAATTTGGAGTTTCTGATGGTTACGTGTTTCAGTTGAGTCCTGGTGATTCTGTTATGGATGTGCGGCAGTTTCTTCTTGATGCTCCAGAGACATGCTTCGTTACATGCTATGATCTATCATTGCACATAAAGGACGGATCTG-TTCATCATCTAGAAGATTATAACGAAATCTCTGAAGTAGCTGATATCACCACAGGAGATTGCTTCCTGGAGATGGTGCCAGGTCTGTCTTATTTATGTGGACCACGAGTTATTGATTTTAGCCTAAGTTGCGTGGACTCTTCACTTTCGATGCCCCACCCATGTCAGATTCTTTAAAAATACACTACATTTGGAGAATCTGGCACGCACCCATTGACATTTTTGAAGAGTCCGAGCAACATAGATTTTAACAGTTACCAACGAGCTCATTACATGTTTCTTCTAACTTAAACCTGGCTGTGCAGCATTGTATGATGATCGATCCATA</genome_strand>
        <mrna_strand>GGGATAAAAATGGCCGGGAAATCAAACAAAGGGAAGAATCGGAAGGCAGTTCAAAATGCTACCAGTTCTTCAGAGCAAGCAGCCCCACCTGATGCTAATGTGAATGATACTGCAACGCATGCGGAGTCTAATGGAACCACAGTTGTGACTGCTCAAACTGATACAAAAACAGAGGCAAAGGAGTCTGGAAATGAGACCTCCACACAGGAGGCAAAGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACATCCATCTTTATCCTGTTTCTGTCAAAACCCAAGGAGGGGATAAGCTAGATCTACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTCCTGGTGATTCTGTTATGGATGTGCGGCAGTTTCTTCTTGATGCTCCAGAGACATGCTTCGTTACATGCTATGATCTATCGTTGCATATAAAGGATGGGTCTGTTTCATCATCTAGAAGATTATAACGAAATCTCTGAAGTAGCTGATATCACCACAGGAGATTGCTTCCTGGAGATTGTG-CAG...............................................................................................................................................................................................................................CATTGTATGATGATCGATCCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423687" ref_strand="-" ref_description="SGN-E423687 [STM-42-M10]">
      <seq>gcttcgttacatgctatgatctatcgtgccatacaaaggatgggtctgttcatcatctagaagatantaacgaaatctctgaagtagctgatatcaccacaggagatgcttccctggagatggtgccagcattgtatgatgatcgatccataagggctcatgttcaccgcactcgagaattgctctctctttccacattgcactcctcactatcaacgtcacttgcactgcagcatgaaatcggaagtaatgttgcgaaatctggagagcctgtgaaggccaatgtaccagaacttgaaaacttgggttttgtggaggatgtttctggttcagtctctagtttgctgtcagcaccttcaaaggaaattaaatgtgttgaaagcattgtgttctcttcgtttaatcatcctcctagctacagaaggctctccggggacttgatttatttggatgtagtcacactggaaggaaataagtattgtattactggaacaaccaaaactttttatgtcaattccagtaccacaactgttcttgatcctaggcctaataaaactggttcagaagcaactactcttattgggctcttgcaaaagatcagctccagatttaagaaagcttttcgggagatattggagcggaaggcttctgcacatccttttgaaaatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="84279" stop="86106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84579" g_stop="84707" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84708" i_stop="84930" i_length="223">
            <donor d_prob="0.968" d_score="0.94"/>
            <acceptor a_prob="0.608" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84931" g_stop="85068" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="267" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85069" i_stop="85162" i_length="94">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85163" g_stop="85319" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="424" r_length="157" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85320" i_stop="85414" i_length="95">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85415" g_stop="85608" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="618" r_length="194" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85609" i_stop="85752" i_length="144">
            <donor d_prob="0.112" d_score="1.00"/>
            <acceptor a_prob="0.827" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85753" g_stop="85806" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="672" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E423687" ref_strand="-">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423687" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="84579" e_stop="84707"/>
          <exon e_start="84931" e_stop="85068"/>
          <exon e_start="85163" e_stop="85319"/>
          <exon e_start="85415" e_stop="85608"/>
          <exon e_start="85753" e_stop="85806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCGTTACATGCTATGATCTATCATTGCACATAAAGGACGGATCTGTTCATCATCTAGAAGATTATAACGAAATCTCTGAAGTAGCTGATATCACCACAGGAGATTGCTT-CCTGGAGATGGTGCCAGGTCTGTCTTATTTATGTGGACCACGAGTTATTGATTTTAGCCTAAGTTGCGTGGACTCTTCACTTTCGATGCCCCACCCATGTCAGATTCTTTAAAAATACACTACATTTGGAGAATCTGGCACGCACCCATTGACATTTTTGAAGAGTCCGAGCAACATAGATTTTAACAGTTACCAACGAGCTCATTACATGTTTCTTCTAACTTAAACCTGGCTGTGCAGCATTGTATGATGATCGATCCATAAGGGCTCATGTTCACCGCACTCGAGAATTGCTCTCTCTTTCCACATTGCACTCCTCACTATCAACGTCACTTGCACTGCAGCATGAAATCGGAAGTAATGTTGCGAAATCTGGAGGTTTGCTGTTCATTTGTTTATCTTTGCTTCTTGCTGATGTTTGTGTTGTTTAATTTCATTGTCTAACAAACATTTTTGCTTTTTTGTGTTTTAGAGCCTGTGAAGGCCGATGTACCAGAACTTGAAAACTTGGGTTTTGTGGAGGATGTTTCTGGTTCAGTCTATAGTTTGCTGTCGGTACCTTCAAAGGAAATTAAATGTGTCGAAAGCATTGTGTTCTCTTCGTTTAATCCTCCTCCTAGCTACAGAAGGTTTCTACTTATTATTTTACTAATTATGATCCAACTAATTTTTCTCTCAGGAAGGCTCATTCTGACATTCTTACCATGGTTTCTCTTGAATCCAGGCTCTCCGGGGACTTGATTTATCTGGATGTAGTCACACTAGAAGGAAATAAGTATTGTATTACTGGAACAACCAAAGCTTTTTATGTCAATTCCAGCACCACAACTGTTCTTGATCCTAGGCCAAATAAAACTGGTACAGAAGCAACTACTCTTATTGGGCTCTTGCAAAAGATCAGCTCCAGATTTAAGAAAGGTAGGAGCATGGTAGAAAGTAATTTATTCCTCCCTCACCCAAAAAAAAAAATAATAAGAAAAAAAATTCTCTTGCACTTCATTTGGAGTCCAATTGTCAATCATCTTGTCTTATTGTAATAAAAGATTTTATCTTCGAATGAAGCTTTTCGTGAGATATTGGAGCGGAAGGCTTCTGCACATCCTTTTGAAAATGTTC</genome_strand>
        <mrna_strand>GCTTCGTTACATGCTATGATCTATCGTGCCATACAAAGGATGGGTCTGTTCATCATCTAGAAGATANTAACGAAATCTCTGAAGTAGCTGATATCACCACAGGAGA-TGCTTCCCTGGAGATGGTGCCAG...............................................................................................................................................................................................................................CATTGTATGATGATCGATCCATAAGGGCTCATGTTCACCGCACTCGAGAATTGCTCTCTCTTTCCACATTGCACTCCTCACTATCAACGTCACTTGCACTGCAGCATGAAATCGGAAGTAATGTTGCGAAATCTGGAG..............................................................................................AGCCTGTGAAGGCCAATGTACCAGAACTTGAAAACTTGGGTTTTGTGGAGGATGTTTCTGGTTCAGTCTCTAGTTTGCTGTCAGCACCTTCAAAGGAAATTAAATGTGTTGAAAGCATTGTGTTCTCTTCGTTTAATCATCCTCCTAGCTACAGAAG...............................................................................................GCTCTCCGGGGACTTGATTTATTTGGATGTAGTCACACTGGAAGGAAATAAGTATTGTATTACTGGAACAACCAAAACTTTTTATGTCAATTCCAGTACCACAACTGTTCTTGATCCTAGGCCTAATAAAACTGGTTCAGAAGCAACTACTCTTATTGGGCTCTTGCAAAAGATCAGCTCCAGATTTAAGAAAG................................................................................................................................................CTTTTCGGGAGATATTGGAGCGGAAGGCTTCTGCACATCCTTTTGAAAATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451042" ref_strand="-" ref_description="SGN-E451042 [cSTS-11-G2]">
      <seq>tgatatcaccacaggagattgcttcctggagatggtgccagcattgtatgatgatcgatccataagggctcatgttcaccgcactcgagaattgctctctctttccacattgcactcctcactatcaacgtcacttgcactgcagcatgaaatcggaagtaatgttgcgaaatctggagagcctgtgaaggccaatgtaccagaacttgaaaacttgggttttgtggaggatgtttctggttcagtctctagtttgctgtcagcaccttcaaaggaaattaaatgtgttgaaagcattgtgttctcttcgtttaatcatcctcctagctacagaaggctctccggggacttgatttatttggatgtagtcacactggaaggaaataagtattgtattactggaacaaccaaaactttttatgtcaattccagtaccacaactgttcttgatcctaggcctaataaaactggttcagaagcaactactcttattgggctcttgcaaaagatcagctccagatttaagaaagcttttcgggagatattggagcggaaggcttctgcacatccttttgaaaatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="84367" stop="86106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84667" g_stop="84707" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84708" i_stop="84930" i_length="223">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.608" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84931" g_stop="85068" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="179" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85069" i_stop="85162" i_length="94">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85163" g_stop="85319" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="336" r_length="157" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85320" i_stop="85414" i_length="95">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85415" g_stop="85608" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="530" r_length="194" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85609" i_stop="85752" i_length="144">
            <donor d_prob="0.112" d_score="1.00"/>
            <acceptor a_prob="0.827" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85753" g_stop="85806" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="584" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E451042" ref_strand="-">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451042" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="84667" e_stop="84707"/>
          <exon e_start="84931" e_stop="85068"/>
          <exon e_start="85163" e_stop="85319"/>
          <exon e_start="85415" e_stop="85608"/>
          <exon e_start="85753" e_stop="85806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATCACCACAGGAGATTGCTTCCTGGAGATGGTGCCAGGTCTGTCTTATTTATGTGGACCACGAGTTATTGATTTTAGCCTAAGTTGCGTGGACTCTTCACTTTCGATGCCCCACCCATGTCAGATTCTTTAAAAATACACTACATTTGGAGAATCTGGCACGCACCCATTGACATTTTTGAAGAGTCCGAGCAACATAGATTTTAACAGTTACCAACGAGCTCATTACATGTTTCTTCTAACTTAAACCTGGCTGTGCAGCATTGTATGATGATCGATCCATAAGGGCTCATGTTCACCGCACTCGAGAATTGCTCTCTCTTTCCACATTGCACTCCTCACTATCAACGTCACTTGCACTGCAGCATGAAATCGGAAGTAATGTTGCGAAATCTGGAGGTTTGCTGTTCATTTGTTTATCTTTGCTTCTTGCTGATGTTTGTGTTGTTTAATTTCATTGTCTAACAAACATTTTTGCTTTTTTGTGTTTTAGAGCCTGTGAAGGCCGATGTACCAGAACTTGAAAACTTGGGTTTTGTGGAGGATGTTTCTGGTTCAGTCTATAGTTTGCTGTCGGTACCTTCAAAGGAAATTAAATGTGTCGAAAGCATTGTGTTCTCTTCGTTTAATCCTCCTCCTAGCTACAGAAGGTTTCTACTTATTATTTTACTAATTATGATCCAACTAATTTTTCTCTCAGGAAGGCTCATTCTGACATTCTTACCATGGTTTCTCTTGAATCCAGGCTCTCCGGGGACTTGATTTATCTGGATGTAGTCACACTAGAAGGAAATAAGTATTGTATTACTGGAACAACCAAAGCTTTTTATGTCAATTCCAGCACCACAACTGTTCTTGATCCTAGGCCAAATAAAACTGGTACAGAAGCAACTACTCTTATTGGGCTCTTGCAAAAGATCAGCTCCAGATTTAAGAAAGGTAGGAGCATGGTAGAAAGTAATTTATTCCTCCCTCACCCAAAAAAAAAAATAATAAGAAAAAAAATTCTCTTGCACTTCATTTGGAGTCCAATTGTCAATCATCTTGTCTTATTGTAATAAAAGATTTTATCTTCGAATGAAGCTTTTCGTGAGATATTGGAGCGGAAGGCTTCTGCACATCCTTTTGAAAATGTTC</genome_strand>
        <mrna_strand>TGATATCACCACAGGAGATTGCTTCCTGGAGATGGTGCCAG...............................................................................................................................................................................................................................CATTGTATGATGATCGATCCATAAGGGCTCATGTTCACCGCACTCGAGAATTGCTCTCTCTTTCCACATTGCACTCCTCACTATCAACGTCACTTGCACTGCAGCATGAAATCGGAAGTAATGTTGCGAAATCTGGAG..............................................................................................AGCCTGTGAAGGCCAATGTACCAGAACTTGAAAACTTGGGTTTTGTGGAGGATGTTTCTGGTTCAGTCTCTAGTTTGCTGTCAGCACCTTCAAAGGAAATTAAATGTGTTGAAAGCATTGTGTTCTCTTCGTTTAATCATCCTCCTAGCTACAGAAG...............................................................................................GCTCTCCGGGGACTTGATTTATTTGGATGTAGTCACACTGGAAGGAAATAAGTATTGTATTACTGGAACAACCAAAACTTTTTATGTCAATTCCAGTACCACAACTGTTCTTGATCCTAGGCCTAATAAAACTGGTTCAGAAGCAACTACTCTTATTGGGCTCTTGCAAAAGATCAGCTCCAGATTTAAGAAAG................................................................................................................................................CTTTTCGGGAGATATTGGAGCGGAAGGCTTCTGCACATCCTTTTGAAAATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598914" ref_strand="+" ref_description="SGN-E598914 [51890]">
      <seq>atctcgagcaactgtccaggaaacaggtggctgatcctaaagttgagggcacaggcttattacgtaatttgtcagagaaaaccaccaataatttgcctcaggnagtctccgaagtttccaatggaaatgagcataccggctcagttgtagaagctgcaaacatcaacttggattgtcctcctgaagtgtctggtgaaactcagttgactgaaagtgagcaagccacttatgcaagcgcaaataatgacttgaaaggcacaaaagcatatcaggaagctgatgtccatggactatacaacctagctatggcgataattgattatagaggacatagagtggtggcccagagtgttttacctggtatccttcaaggtgataaatcagattccctcttgtacggttctgttgataatggcaagaaaatctgctggagtgacgagtttcattccaaggtgctagaagctgcaaaacgtctgcacttgaaggaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="88474" stop="90786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88774" g_stop="89120" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89121" i_stop="89805" i_length="685">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89806" g_stop="89910" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="452" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89911" i_stop="90447" i_length="537">
            <donor d_prob="0.753" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90448" g_stop="90486" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="491" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E598914" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E598914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88774" e_stop="89120"/>
          <exon e_start="89806" e_stop="89910"/>
          <exon e_start="90448" e_stop="90486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTGAGCAACTGTCCAAGAAACAGGTGGCTGATTCTAAAGTTGAGGGTACAGGCTTATTACGTAATTTGTCAGAGAAAACCACCAATAATTTGCCACAGGGAGTCTCCGATGTTTCCAATGGAAATGAGCATGTTGGCTCAGTTGTAGAAGCTGCAAACATCATCTTGGATTGTCCTCCTGAAGTGTCCGGTGAAACTCAGTTGACTGAAAGCGAGCAAGCCACTTATGCAAGCGCAAATAATGACTTGAAAGGCACAAAAGCATATCAGGAAGTTGATATCCATGGACTGTACAACCTAGCTATGGCGATAATTGATTATAGAGGACATAGAGTGGTGGCCCAGGTGCTTATTGAACTTGCAGTGATCTATATTTAGTTGTATGCTGTAGTGTAATGCTTTACACAAGTTCAGACGTGAATGTCAGAGTGCTAATGAACATGAGTTTTGCTAATCTGTCCCATTTAGTGTGAAGGCGTTAGACTGCGCGGTAAACAAAAGAAATTAAAGTAGACCTTGGACATGTAACCCAAATATATACGAAGTACATAACTTATCCTTTCAATAATGAGTGATGAGAGTTCCTCAGGTCTTTGCCTTTTCTCTCTTTATATAAAAGAATGAGCGATCAAGTGGGTCTCAGCTCCCAATAAGTCATGTCAGAAGGTTTAATAGTTTTCAGACGGAGGTGTCCTTCTTTCTGGGGTAAGGCTAAAAAGGGAAGTGTATTAAAGTGGCACATAGTATACCACAATTAGGTTACCAAATCTAGCCATTTGGAGATCTATAAGTGAACTGTACTTGTAATAATTAATTGTGACATAAGCAGGGTTTTTAGATGTACTATTGTTGCATTTCCTATTAATAATAACAAGCTTATATGGATCTTTTCAGTGGGTACTCTTCTTGATATTTGTATTTAATTTAATCTTCTAATTTTACTTTCAGCTGCAAGGCTTACTGTGATAGATGTATTATTCTGCTTATTTATCGAAAGATTATAGATTCTTTTTTCTGTTTTTCTTTGTAGAGTGTTTTACCTGGTATCCTTCAAGGTGATAAATCAGATTCCCTCTTATACGGTTCTGTTGATAATGGCAAGAAAATCTGCTGGAGTGACGAGTTCCATTCTAAGGTAGGAGCGGACCGTAAACTTTTGATTTCTTTTTCCCTTGTATGGTTTGCACAACAATTTAGGATGTGTATGCCTCTCTGGTGTTGGCATAGTTGTGGGAAGTATAAGGCCTATTAGGATTTCTTTTGGTTTATCATGATTCTTTACTAACTATCGATTTGGTCCTATATGTTGTCATAATAATTTCATTTGAAGAATCTGAGCTTCTAGGTTGTGCTCAAGTGGACATGATTGATCAACATGTCTTGCTGGATTATTCATCTTTTCCTTTTGTGCCTTTGGTTATTGTGAGCAATCATTTAAATTCCTTTTTTTTGGTGTGAGGGGTGGGGTTGTGGGGAGCTTCCTTATTCCTGATAATTTAGATGGTAAAGAATGATATTTGTTGATAGGTTTCACAGGGGTGATATCTCAATGTGAATGTAATGATGGGTGATGTTACTTTTCCTTTTTATCATTCTTGATTCATCTTGTTCATTTGAATTCTATCTGTTTCTCTCTTGTACCTGAAATTTCATCCTGCTATATTTGTCTTAGGTGCTAGAAGCTGCAAAACGTCTGCACTTGAAGGAACAT</genome_strand>
        <mrna_strand>ATCTCGAGCAACTGTCCAGGAAACAGGTGGCTGATCCTAAAGTTGAGGGCACAGGCTTATTACGTAATTTGTCAGAGAAAACCACCAATAATTTGCCTCAGGNAGTCTCCGAAGTTTCCAATGGAAATGAGCATACCGGCTCAGTTGTAGAAGCTGCAAACATCAACTTGGATTGTCCTCCTGAAGTGTCTGGTGAAACTCAGTTGACTGAAAGTGAGCAAGCCACTTATGCAAGCGCAAATAATGACTTGAAAGGCACAAAAGCATATCAGGAAGCTGATGTCCATGGACTATACAACCTAGCTATGGCGATAATTGATTATAGAGGACATAGAGTGGTGGCCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTTTACCTGGTATCCTTCAAGGTGATAAATCAGATTCCCTCTTGTACGGTTCTGTTGATAATGGCAAGAAAATCTGCTGGAGTGACGAGTTTCATTCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGAAGCTGCAAAACGTCTGCACTTGAAGGAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330349" ref_strand="+" ref_description="SGN-E330349 [cTOD-4-A1]">
      <seq>ggaactatgaacttttctcatttatgggatctttgttggaacgagggtcttgtcagatgtgcaaagcacatcctcaaagatttgctgagggatgctgaggaccatgatcttgcaaacacaatctcacatttttacaactgtttgtttggaaatatgcaaacagtatctaataaaggcggcgccaacagttctagaaaccaaaagaaggaccacgttgggaaccagcaaaagtcatccaagggacagggaaagcgaaaaaatgtaggatctgccaagaagaaacagtcctcctatttgagtatcacgtctgacagtttgtggtctgacatccaagaattggccaaactcaggtatcagtttgagttgcctgacgatgcaaaaatgctggtaaagaaaattccagttgtacgcaatctctgtcagaaggtaagtgtaaccgttgcagctcgtaaatatgaccttgactctgttgcaccttttcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="92358" stop="96086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92658" g_stop="92735" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92736" i_stop="93252" i_length="517">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93253" g_stop="93381" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="207" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93382" i_stop="94174" i_length="793">
            <donor d_prob="0.307" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94175" g_stop="94324" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="357" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94325" i_stop="94422" i_length="98">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94423" g_stop="94491" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="426" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94492" i_stop="95728" i_length="1237">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95729" g_stop="95786" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="484" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E330349" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92658" e_stop="92735"/>
          <exon e_start="93253" e_stop="93381"/>
          <exon e_start="94175" e_stop="94324"/>
          <exon e_start="94423" e_stop="94491"/>
          <exon e_start="95729" e_stop="95786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACTAGGAACTTGCCTCATTTATGGGATCTTTGTTCCAACGAGATTCTTGTCAGATGTGCAAAGCACATCCTCAAGGTGATTAATTTTGTTCTTCAGATTGTTATAGGGTTTTGAATGTTGTTCATAAAAAATAAGTTTTTCATTGCTACTTTAAAAAGCCTTAATAATATTGGATCGTGAATGTACTTTATCTTATGCTTTGACAAGTGTGGTCCCACTTGAGAACATGCTTCACCATTTGGTCCTGAACAGCATTTTTGTATTTCTCTCAAAGGATCAATTATTTTGTGTCTCATGTGTCTCAACATTTTTGTTTAGCATTATTAGTAGAATGATGAAGTGTTATTTTTTTCACCTGCTTTTATTTCTTAATTCTTCTGGTCAAAAGCTCTCTTAAATCAACAAAAGGGCATTTTTAGGCTCTAGTGGTTTCAAAATATTCATTTACGCTTAACCACATAATGTGTAAGCTGGAGCACACGTGATATTTTACTCTGATTATCTTGATGCAGGGAACTGAAGAAATTGAATATTAATTTATATGTTTATGGATTTTTGAATTACTAACAATTTGATCTGATGGGACACGCAGGATTTGCTGAGGGATGCTGAGGACCATGATCTTGCAAACACAATCTCACATTTTTACAACTGTTTGTTTGGAAATATGCAAACAGTATCTAATAAAGGCGGCGCCAACAGTTCTAGAAACCAAAAGAAGGTAGAGAGAGAGAGAGCGCTTATTGTCATAACTTACTGCCATTTATTGCTATTTCTTGTAGTAAAATACCATGAGGAAGTTCTGTTGAATTGAGTGTACCACCTCATCTAAAAGCTTAACCTATTAAAACTTAGGGGAAAGTTTTATTTATTTATTTAGGTTTACAACATGCCCCTCAAGTGCTGATGTGATTCTTTTTATTTGGCCATCACTGAAAATATATTGTTGATGAGTAACAGTGACTTAGTATAACATCTCTAGCAGATCTAATACCATGTTGAGTTATGCATACCACACCTCCTGTAAAAGCTTGAGTTATTAGGGTGGGTTGCTTTCTCCCCTCTTTTTATAGCATTCCCGTGCTTGGCCAATATTATTCATTTGTATGCTGATATTTGAAGATGCATATGGAGATTATTAGTTTCATTGTTTGAAAATTTATGTTGGCTGTATAGAGAAAGCATTTTCTAGAATCATTTAAGCTTTATGTGCATAATGAGAATAATACATAGAATATATTCTTCATTGTACGTGATCTATTTTCATCATTTGTTTGATGATGAGCCTTTTGTGAAGACACAGTTACCTTCACCTATATATATATACATACATATACATACATGTACATATATACACACACACACACACATATATATATATACACATACATATACATACATATACATATATACACACACACACACACATATATATATATTCTTCATTATTTCTCAGAGAAGAGTATATGGTAAATGATTTTAATAAAATTAATTCTATGAAACACATTTCATAGGACCACGTTGGGAACCAGCAAAAGTCATCCAAGGGACAGGGAAAGCGAAAAAATGTAGGATCTGCCAAGAAGAAACAGTCCTCCTATTTGAGTATCACGTCTGACAGTTTGTGGTCTGACATCCAAGAATTTGCGAAACTCAAGTATCAGGTATCATATTCTTTTAAGAACCTCTTCCAGTTGCTTTCCCAGATGTTTTAAGTTACCAGTTAAGGTTGATTTCTCTCTCTCTCTCTCTCTCTCTTCAGTTTGAGTTGCCTGACGATGCAAAAATGCTGGTAAAGAAAATTCCAGTTGTACGCAATCTCTGTCAGAAGGTATTTTCATCCAGGAATTCTTAGATTTAGTTGTGATTATGCATTTCTTACTATTGCTATTTTCCCTTTATCCCTGTATTATCTTATATTGGTCAATCATTATCATCTTTTCGAAGTGGCTATGGTGCCATATAGAGGTGTCAAATTGGGTTGAACTGGACGGGTTGGGTTGAAATGGACTAAAATGCAGGTCATAACCCAACCCACACAATTCTACCAAGTTTTAATTGCTTTATTTGTTCTTTTATAAACTTTTATGGCCTAATAATTTTCTTTTTCTTTATTATGACTATATAATAAAGATATCAAACGAAACCTCTTTTTTCCAGTTTTTTTAAAAAATGTCTTTTTTACAAGATTTTTCATGAGTAAATTTGGGCTACATACCAGCCCAAATTTCAATGGGCTGAAATGGGTTGAGCTAATATATGGGTACCCCTAGCGACATGTCATAATTCATATATCGAGATCCCTAGGATTCATATGGTGAAAACACACATCTTGTTTATTTTACTGTGACCACTGACTCAAAATTTTGCTGCTAAGTGAAGATGGAACTTGTTTGGTGTTAACTTTTGTACTTTCTATATGCATGACAGTTTCGTTATATTTTAGGAGTTGAGACTCTCTGTGGATTATCCAGAGGTAGTCCGCTGGAAGTCGTTTACAGTCTATTATCCTGCTTTAGAGACAGCCAGCATTTTATTTATATGTTGTGTGTGAACTGCTCTTTGTGGCATTAATTCTCTTGGCGCAAGTGAAGTTGGGAAAAAGTTGTCCCTGTTCTTTCAGGTGTTCAACTTGTCAAGATCATCAAAGTCAAGTAGTGAAATTTCCTTCCAGATATGCAAATCTTAATATTGGTTATAAGGCACAGTGAAAAGTTTGTGGTGTTATTTGACACAGTAATTTTATTGTTGTCTTTTATGTTTAAATTAAATTAAATTTTTTATTTGAATATGAGCTGTTAGAAGGAGATCACTATACCTTGGTGGTAGAGATGACTGGAGGTTATTAACTTGTCCATGCCGTGGTTGATGAAATTTTGTTCAGATAAATTTCCCCTCTTAGTATTCGGGCTAAAGATTAATAAAGCATCTTTTCAGCTTATATTAGATAGCTATAAGTAATACGAGTTCAATTTGATAATAGTCTTCCCTTTGAAATCCGCGGGTTGTTAGACACTGAATCTACCTTCATATGTCCAAGTGACTCCTAGAACTTTTTCTTTTAACAGGTAGGTGTAACCGTTGCAGCTCGTAAATATGACCTTGACTCTGTTGCACCTTTTCAAG</genome_strand>
        <mrna_strand>GGAACTATGAACTTTTCTCATTTATGGGATCTTTGTTGGAACGAGGGTCTTGTCAGATGTGCAAAGCACATCCTCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGCTGAGGGATGCTGAGGACCATGATCTTGCAAACACAATCTCACATTTTTACAACTGTTTGTTTGGAAATATGCAAACAGTATCTAATAAAGGCGGCGCCAACAGTTCTAGAAACCAAAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCACGTTGGGAACCAGCAAAAGTCATCCAAGGGACAGGGAAAGCGAAAAAATGTAGGATCTGCCAAGAAGAAACAGTCCTCCTATTTGAGTATCACGTCTGACAGTTTGTGGTCTGACATCCAAGAATTGGCCAAACTCAGGTATCAG..................................................................................................TTTGAGTTGCCTGACGATGCAAAAATGCTGGTAAAGAAAATTCCAGTTGTACGCAATCTCTGTCAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTGTAACCGTTGCAGCTCGTAAATATGACCTTGACTCTGTTGCACCTTTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400178" ref_strand="+" ref_description="SGN-E400178 [cSTC-5-B15]">
      <seq>tgcaaagcacatcctcaaggatttgctgaaggatgctgaggaccatgatcttgcaaacacaatctcacatttttacaactgtttgtttggaaatatgcaaacagtatctaataaaggcggcgccaacagttctagaaaccaaaagaaggaccacatcgggaaccagcaaaagtcatccaagggacaaggaaagcgaaaaaatgtaggatctgccaagaagaaacagtcctcctatttgagcatcacgtctgacagtttgtggtctgacatccaagaatttgcgaaactcaagtatcagtttgagttgcctgaggatgcaaaagtgctggtaaagaaaattccagttgtacgcaatctctgtcagaaggtaggtgtaaccgttgcagctcgtaaatatgaccttgactctgctgcaccttttcaagcatcagatattatgaatctccaaccagtggtgaagcattcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="92417" stop="96128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92717" g_stop="92735" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92736" i_stop="93252" i_length="517">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93253" g_stop="93381" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="148" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93382" i_stop="94174" i_length="793">
            <donor d_prob="0.307" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94175" g_stop="94324" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="298" r_length="150" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94325" i_stop="94422" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94423" g_stop="94491" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="367" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94492" i_stop="95728" i_length="1237">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95729" g_stop="95828" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="467" r_length="100" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E400178" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92717" e_stop="92735"/>
          <exon e_start="93253" e_stop="93381"/>
          <exon e_start="94175" e_stop="94324"/>
          <exon e_start="94423" e_stop="94491"/>
          <exon e_start="95729" e_stop="95828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAAGCACATCCTCAAGGTGATTAATTTTGTTCTTCAGATTGTTATAGGGTTTTGAATGTTGTTCATAAAAAATAAGTTTTTCATTGCTACTTTAAAAAGCCTTAATAATATTGGATCGTGAATGTACTTTATCTTATGCTTTGACAAGTGTGGTCCCACTTGAGAACATGCTTCACCATTTGGTCCTGAACAGCATTTTTGTATTTCTCTCAAAGGATCAATTATTTTGTGTCTCATGTGTCTCAACATTTTTGTTTAGCATTATTAGTAGAATGATGAAGTGTTATTTTTTTCACCTGCTTTTATTTCTTAATTCTTCTGGTCAAAAGCTCTCTTAAATCAACAAAAGGGCATTTTTAGGCTCTAGTGGTTTCAAAATATTCATTTACGCTTAACCACATAATGTGTAAGCTGGAGCACACGTGATATTTTACTCTGATTATCTTGATGCAGGGAACTGAAGAAATTGAATATTAATTTATATGTTTATGGATTTTTGAATTACTAACAATTTGATCTGATGGGACACGCAGGATTTGCTGAGGGATGCTGAGGACCATGATCTTGCAAACACAATCTCACATTTTTACAACTGTTTGTTTGGAAATATGCAAACAGTATCTAATAAAGGCGGCGCCAACAGTTCTAGAAACCAAAAGAAGGTAGAGAGAGAGAGAGCGCTTATTGTCATAACTTACTGCCATTTATTGCTATTTCTTGTAGTAAAATACCATGAGGAAGTTCTGTTGAATTGAGTGTACCACCTCATCTAAAAGCTTAACCTATTAAAACTTAGGGGAAAGTTTTATTTATTTATTTAGGTTTACAACATGCCCCTCAAGTGCTGATGTGATTCTTTTTATTTGGCCATCACTGAAAATATATTGTTGATGAGTAACAGTGACTTAGTATAACATCTCTAGCAGATCTAATACCATGTTGAGTTATGCATACCACACCTCCTGTAAAAGCTTGAGTTATTAGGGTGGGTTGCTTTCTCCCCTCTTTTTATAGCATTCCCGTGCTTGGCCAATATTATTCATTTGTATGCTGATATTTGAAGATGCATATGGAGATTATTAGTTTCATTGTTTGAAAATTTATGTTGGCTGTATAGAGAAAGCATTTTCTAGAATCATTTAAGCTTTATGTGCATAATGAGAATAATACATAGAATATATTCTTCATTGTACGTGATCTATTTTCATCATTTGTTTGATGATGAGCCTTTTGTGAAGACACAGTTACCTTCACCTATATATATATACATACATATACATACATGTACATATATACACACACACACACACATATATATATATACACATACATATACATACATATACATATATACACACACACACACACATATATATATATTCTTCATTATTTCTCAGAGAAGAGTATATGGTAAATGATTTTAATAAAATTAATTCTATGAAACACATTTCATAGGACCACGTTGGGAACCAGCAAAAGTCATCCAAGGGACAGGGAAAGCGAAAAAATGTAGGATCTGCCAAGAAGAAACAGTCCTCCTATTTGAGTATCACGTCTGACAGTTTGTGGTCTGACATCCAAGAATTTGCGAAACTCAAGTATCAGGTATCATATTCTTTTAAGAACCTCTTCCAGTTGCTTTCCCAGATGTTTTAAGTTACCAGTTAAGGTTGATTTCTCTCTCTCTCTCTCTCTCTCTTCAGTTTGAGTTGCCTGACGATGCAAAAATGCTGGTAAAGAAAATTCCAGTTGTACGCAATCTCTGTCAGAAGGTATTTTCATCCAGGAATTCTTAGATTTAGTTGTGATTATGCATTTCTTACTATTGCTATTTTCCCTTTATCCCTGTATTATCTTATATTGGTCAATCATTATCATCTTTTCGAAGTGGCTATGGTGCCATATAGAGGTGTCAAATTGGGTTGAACTGGACGGGTTGGGTTGAAATGGACTAAAATGCAGGTCATAACCCAACCCACACAATTCTACCAAGTTTTAATTGCTTTATTTGTTCTTTTATAAACTTTTATGGCCTAATAATTTTCTTTTTCTTTATTATGACTATATAATAAAGATATCAAACGAAACCTCTTTTTTCCAGTTTTTTTAAAAAATGTCTTTTTTACAAGATTTTTCATGAGTAAATTTGGGCTACATACCAGCCCAAATTTCAATGGGCTGAAATGGGTTGAGCTAATATATGGGTACCCCTAGCGACATGTCATAATTCATATATCGAGATCCCTAGGATTCATATGGTGAAAACACACATCTTGTTTATTTTACTGTGACCACTGACTCAAAATTTTGCTGCTAAGTGAAGATGGAACTTGTTTGGTGTTAACTTTTGTACTTTCTATATGCATGACAGTTTCGTTATATTTTAGGAGTTGAGACTCTCTGTGGATTATCCAGAGGTAGTCCGCTGGAAGTCGTTTACAGTCTATTATCCTGCTTTAGAGACAGCCAGCATTTTATTTATATGTTGTGTGTGAACTGCTCTTTGTGGCATTAATTCTCTTGGCGCAAGTGAAGTTGGGAAAAAGTTGTCCCTGTTCTTTCAGGTGTTCAACTTGTCAAGATCATCAAAGTCAAGTAGTGAAATTTCCTTCCAGATATGCAAATCTTAATATTGGTTATAAGGCACAGTGAAAAGTTTGTGGTGTTATTTGACACAGTAATTTTATTGTTGTCTTTTATGTTTAAATTAAATTAAATTTTTTATTTGAATATGAGCTGTTAGAAGGAGATCACTATACCTTGGTGGTAGAGATGACTGGAGGTTATTAACTTGTCCATGCCGTGGTTGATGAAATTTTGTTCAGATAAATTTCCCCTCTTAGTATTCGGGCTAAAGATTAATAAAGCATCTTTTCAGCTTATATTAGATAGCTATAAGTAATACGAGTTCAATTTGATAATAGTCTTCCCTTTGAAATCCGCGGGTTGTTAGACACTGAATCTACCTTCATATGTCCAAGTGACTCCTAGAACTTTTTCTTTTAACAGGTAGGTGTAACCGTTGCAGCTCGTAAATATGACCTTGACTCTGTTGCACCTTTTCAAGCATCAGATATTATGAATCTCCAACCAGTGGTGAAGCATTCTA</genome_strand>
        <mrna_strand>TGCAAAGCACATCCTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGCTGAAGGATGCTGAGGACCATGATCTTGCAAACACAATCTCACATTTTTACAACTGTTTGTTTGGAAATATGCAAACAGTATCTAATAAAGGCGGCGCCAACAGTTCTAGAAACCAAAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCACATCGGGAACCAGCAAAAGTCATCCAAGGGACAAGGAAAGCGAAAAAATGTAGGATCTGCCAAGAAGAAACAGTCCTCCTATTTGAGCATCACGTCTGACAGTTTGTGGTCTGACATCCAAGAATTTGCGAAACTCAAGTATCAG..................................................................................................TTTGAGTTGCCTGAGGATGCAAAAGTGCTGGTAAAGAAAATTCCAGTTGTACGCAATCTCTGTCAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTGTAACCGTTGCAGCTCGTAAATATGACCTTGACTCTGCTGCACCTTTTCAAGCATCAGATATTATGAATCTCCAACCAGTGGTGAAGCATTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738401" ref_strand="+" ref_description="SGN-E738401 [LC13CA06]">
      <seq>ccattaaacagtcctcctatttgagtatcacgtctgacagtttgtggtctgacatccaagaatttgcgaaactcaagtatcagtttgagttgcctgacgatgcaaaaatgctggtaaagaaaattccagttgtacgcaatctctgtcagaaggtaggtgtaaccgttgcagctcgtaaatatgaccttgactctgttgcaccttttcaagcatcagatattatgaatctccaaccagtggtgaagcattctatcccagttagttcagaagctaaggaccttgttgaaacaggaaaggctcaattagctgagggtttgcttagtgaggcctacactttattttccgaagcattcacaatacttcagcaggtgacgggtccgatgcaccgggaagttgccaattgttgtcgctaccttgctatggttctatatcatgctggagatatggctggtgctataatgcaacagcacaaggaacttatcataaatgaaagatgccttggactggaccatcctgacactgcacacagttatggaaacatggctcttttctatcatggtcttaaccaaacagaacttgcattgaggcatatgtcacgggccttgcttcttcttggcttgtcatcaggtcctgatcatccggatgttgccgcaacatttataaatgttgcaatgatgtaccaagatattgggaagatggatacagcacttcgttatctccaagaagcattgaaaaagaatgaacggttgcttggggaggaacatattcagactgctgtttgttatcatgctctggcaattgcgttcaactgtatgggtgctttcaagctttcgcaccagcatgaaaagaaaacttatgatatactacccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="93947" stop="97353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94242" g_stop="94324" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94325" i_stop="94422" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94423" g_stop="94491" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="152" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94492" i_stop="95728" i_length="1237">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95729" g_stop="95887" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="311" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95888" i_stop="96036" i_length="149">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96037" g_stop="96093" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="368" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96094" i_stop="96177" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96178" g_stop="96218" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="409" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96219" i_stop="96367" i_length="149">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96368" g_stop="96487" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="529" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96488" i_stop="96626" i_length="139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96627" g_stop="96936" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="839" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="96937" i_stop="97020" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97021" g_stop="97053" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="840" r_stop="872" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E738401" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94242" e_stop="94324"/>
          <exon e_start="94423" e_stop="94491"/>
          <exon e_start="95729" e_stop="95887"/>
          <exon e_start="96037" e_stop="96093"/>
          <exon e_start="96178" e_stop="96218"/>
          <exon e_start="96368" e_stop="96487"/>
          <exon e_start="96627" e_stop="96936"/>
          <exon e_start="97021" e_stop="97053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAACAGTCCTCCTATTTGAGTATCACGTCTGACAGTTTGTGGTCTGACATCCAAGAATTTGCGAAACTCAAGTATCAGGTATCATATTCTTTTAAGAACCTCTTCCAGTTGCTTTCCCAGATGTTTTAAGTTACCAGTTAAGGTTGATTTCTCTCTCTCTCTCTCTCTCTCTTCAGTTTGAGTTGCCTGACGATGCAAAAATGCTGGTAAAGAAAATTCCAGTTGTACGCAATCTCTGTCAGAAGGTATTTTCATCCAGGAATTCTTAGATTTAGTTGTGATTATGCATTTCTTACTATTGCTATTTTCCCTTTATCCCTGTATTATCTTATATTGGTCAATCATTATCATCTTTTCGAAGTGGCTATGGTGCCATATAGAGGTGTCAAATTGGGTTGAACTGGACGGGTTGGGTTGAAATGGACTAAAATGCAGGTCATAACCCAACCCACACAATTCTACCAAGTTTTAATTGCTTTATTTGTTCTTTTATAAACTTTTATGGCCTAATAATTTTCTTTTTCTTTATTATGACTATATAATAAAGATATCAAACGAAACCTCTTTTTTCCAGTTTTTTTAAAAAATGTCTTTTTTACAAGATTTTTCATGAGTAAATTTGGGCTACATACCAGCCCAAATTTCAATGGGCTGAAATGGGTTGAGCTAATATATGGGTACCCCTAGCGACATGTCATAATTCATATATCGAGATCCCTAGGATTCATATGGTGAAAACACACATCTTGTTTATTTTACTGTGACCACTGACTCAAAATTTTGCTGCTAAGTGAAGATGGAACTTGTTTGGTGTTAACTTTTGTACTTTCTATATGCATGACAGTTTCGTTATATTTTAGGAGTTGAGACTCTCTGTGGATTATCCAGAGGTAGTCCGCTGGAAGTCGTTTACAGTCTATTATCCTGCTTTAGAGACAGCCAGCATTTTATTTATATGTTGTGTGTGAACTGCTCTTTGTGGCATTAATTCTCTTGGCGCAAGTGAAGTTGGGAAAAAGTTGTCCCTGTTCTTTCAGGTGTTCAACTTGTCAAGATCATCAAAGTCAAGTAGTGAAATTTCCTTCCAGATATGCAAATCTTAATATTGGTTATAAGGCACAGTGAAAAGTTTGTGGTGTTATTTGACACAGTAATTTTATTGTTGTCTTTTATGTTTAAATTAAATTAAATTTTTTATTTGAATATGAGCTGTTAGAAGGAGATCACTATACCTTGGTGGTAGAGATGACTGGAGGTTATTAACTTGTCCATGCCGTGGTTGATGAAATTTTGTTCAGATAAATTTCCCCTCTTAGTATTCGGGCTAAAGATTAATAAAGCATCTTTTCAGCTTATATTAGATAGCTATAAGTAATACGAGTTCAATTTGATAATAGTCTTCCCTTTGAAATCCGCGGGTTGTTAGACACTGAATCTACCTTCATATGTCCAAGTGACTCCTAGAACTTTTTCTTTTAACAGGTAGGTGTAACCGTTGCAGCTCGTAAATATGACCTTGACTCTGTTGCACCTTTTCAAGCATCAGATATTATGAATCTCCAACCAGTGGTGAAGCATTCTATCCCAGTTAGTTCAGAAGCTAAGGACCTTGTTGAAACAGGAAAGGCTCAATTAGCTGAGGTATTAACTGTTTCAATTGGTTAAAGAAATGGAGATTCTCATGTTAGTCATGGATATCTTGAGAGGCTAGCTGTCAATTTTTTTTGCCTTCTGTTGTACTCTTTAGTTTGTAACTTACCTTGGTGGAATAATATCCTCATACATTTCAGGGTTTGCTTAGTGAGGCCTACACTTTATTTTCCGAAGCATTCACAATACTTCAGCAGGTATATTACTGATTATTTTTTCTCTGCAATGCTTTGAAGTCTTATATTATTTAAGTTCTGATTCCAATAATTTTAAAAATGCAGGTGACGGGTCCGATGCACCGGGAAGTTGCCAATTGTTGTCGGTGAGTAGTATTGTGCTCTACACGTCACTCTTTTTGTGAGAGAATATGATTGTGCATTGTAGTCTTTGGTTATTGTGTTTTCTGTCTTTTGCTTTCATTGGTTTTTCTGTCTTATCTTTATTCTTTTCTATAATTTTTTTCTCTTTCAGCTACCTTGCTATGGTTCTATATCATGCTGGAGATATGGCTGGTGCTATAATGCAACAGCACAAGGAACTTATCATAAATGAAAGATGCCTTGGACTGGACCATCCTGACACTGCACACAGGCAATTTTCTTGTCTTTGAACTCTTTTTCTTTCTTTTGCTATATGTTGCCTATTAGCTTGCTGGTGTCGATTTGATGCCGGAAACCTGTATTTCCGGATAATTATGTCTAGTAACGTGAGTTTGGTAATGTTGCTGCAGTTATGGAAACATGGCTCTTTTCTATCATGGTCTTAACCAAACAGAACTTGCATTGAGGCATATGTCACGGGCCTTGCTTCTTCTTGGCTTGTCATCAGGTCCTGATCATCCGGATGTTGCCGCAACATTTATAAATGTTGCAATGATGTACCAAGATATTGGGAAGATGGATACAGCACTTCGTTATCTCCAAGAAGCATTGAAAAAGAATGAACGGTTGCTTGGGGAGGAACATATTCAGACTGCTGTTTGTTATCATGCTCTGGCAATTGCGTTCAACTGTATGGGTGCTTTCAAGCTTTCGCACCAGGCATGTACTTTAACTGGACAGTTTACTGTGCTAAGAAAATGATAGTTACTGTTTTAACCATTTTAATTAATTTCTTTTCAACAGCATGAAAAGAAAACTTATGATATACTAGCCAAA</genome_strand>
        <mrna_strand>CCATTAAACAGTCCTCCTATTTGAGTATCACGTCTGACAGTTTGTGGTCTGACATCCAAGAATTTGCGAAACTCAAGTATCAG..................................................................................................TTTGAGTTGCCTGACGATGCAAAAATGCTGGTAAAGAAAATTCCAGTTGTACGCAATCTCTGTCAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTGTAACCGTTGCAGCTCGTAAATATGACCTTGACTCTGTTGCACCTTTTCAAGCATCAGATATTATGAATCTCCAACCAGTGGTGAAGCATTCTATCCCAGTTAGTTCAGAAGCTAAGGACCTTGTTGAAACAGGAAAGGCTCAATTAGCTGAG.....................................................................................................................................................GGTTTGCTTAGTGAGGCCTACACTTTATTTTCCGAAGCATTCACAATACTTCAGCAG....................................................................................GTGACGGGTCCGATGCACCGGGAAGTTGCCAATTGTTGTCG.....................................................................................................................................................CTACCTTGCTATGGTTCTATATCATGCTGGAGATATGGCTGGTGCTATAATGCAACAGCACAAGGAACTTATCATAAATGAAAGATGCCTTGGACTGGACCATCCTGACACTGCACACAG...........................................................................................................................................TTATGGAAACATGGCTCTTTTCTATCATGGTCTTAACCAAACAGAACTTGCATTGAGGCATATGTCACGGGCCTTGCTTCTTCTTGGCTTGTCATCAGGTCCTGATCATCCGGATGTTGCCGCAACATTTATAAATGTTGCAATGATGTACCAAGATATTGGGAAGATGGATACAGCACTTCGTTATCTCCAAGAAGCATTGAAAAAGAATGAACGGTTGCTTGGGGAGGAACATATTCAGACTGCTGTTTGTTATCATGCTCTGGCAATTGCGTTCAACTGTATGGGTGCTTTCAAGCTTTCGCACCAG....................................................................................CATGAAAAGAAAACTTATGATATACTACCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447814" ref_strand="+" ref_description="SGN-E447814 [cSTS-3-C3]">
      <seq>caagtatcagtttgagttgcctgaggatgcaaaagtgctggtaaagaaaattccagttgtacgcaatctctgtcaaaaggtaggtgtaaccgttgcagctcgtaaatatgaccttgactctgctgcaccttttcaagcatcagatattatgaatctccaaccagtggtgaagcattctatcccagttagtccagaagctaaggacctcgttgaaacagggaaggctcaattagctgagggtttgcttagtgaggcctacactttattttccgaagcattcacaatacttcagcaggtgacgggtccaatgcactggggaagttgccaattgttgtcgctaccttgctatggttctatatcatgctggagatatggctggtgctataatgcaacagcacaaggaacttatcataaatgaaagatgccttggactggaccatcctgacactgcacacagttatggaaacatggctcttttctaccatggtcttaaccaaacagaacttgcattgaggcatatgtcacgggccttgcttcttcttggcttgtcatcaggtcctgatcatccggatgttgctgcaacatttataaatgttgcaatgatgtaccaagatattggaaagatggatacagcacttcgttatctccaagaagcattgaaaaagaatgaacggttgcttggggaggaacatattcagactgctgntttgntatcatgctctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="94119" stop="97192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94315" g_stop="94324" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94325" i_stop="94422" i_length="98">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94423" g_stop="94491" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="79" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94492" i_stop="95728" i_length="1237">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95729" g_stop="95887" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="238" r_length="159" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95888" i_stop="96036" i_length="149">
            <donor d_prob="0.960" d_score="0.94"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96037" g_stop="96093" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="295" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96094" i_stop="96177" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96178" g_stop="96218" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="337" r_length="42" r_score="0.902"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96219" i_stop="96367" i_length="149">
            <donor d_prob="0.927" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96368" g_stop="96487" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="457" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96488" i_stop="96626" i_length="139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96627" g_stop="96892" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="724" r_length="267" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E447814" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94315" e_stop="94324"/>
          <exon e_start="94423" e_stop="94491"/>
          <exon e_start="95729" e_stop="95887"/>
          <exon e_start="96037" e_stop="96093"/>
          <exon e_start="96178" e_stop="96218"/>
          <exon e_start="96368" e_stop="96487"/>
          <exon e_start="96627" e_stop="96892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTATCAGGTATCATATTCTTTTAAGAACCTCTTCCAGTTGCTTTCCCAGATGTTTTAAGTTACCAGTTAAGGTTGATTTCTCTCTCTCTCTCTCTCTCTCTTCAGTTTGAGTTGCCTGACGATGCAAAAATGCTGGTAAAGAAAATTCCAGTTGTACGCAATCTCTGTCAGAAGGTATTTTCATCCAGGAATTCTTAGATTTAGTTGTGATTATGCATTTCTTACTATTGCTATTTTCCCTTTATCCCTGTATTATCTTATATTGGTCAATCATTATCATCTTTTCGAAGTGGCTATGGTGCCATATAGAGGTGTCAAATTGGGTTGAACTGGACGGGTTGGGTTGAAATGGACTAAAATGCAGGTCATAACCCAACCCACACAATTCTACCAAGTTTTAATTGCTTTATTTGTTCTTTTATAAACTTTTATGGCCTAATAATTTTCTTTTTCTTTATTATGACTATATAATAAAGATATCAAACGAAACCTCTTTTTTCCAGTTTTTTTAAAAAATGTCTTTTTTACAAGATTTTTCATGAGTAAATTTGGGCTACATACCAGCCCAAATTTCAATGGGCTGAAATGGGTTGAGCTAATATATGGGTACCCCTAGCGACATGTCATAATTCATATATCGAGATCCCTAGGATTCATATGGTGAAAACACACATCTTGTTTATTTTACTGTGACCACTGACTCAAAATTTTGCTGCTAAGTGAAGATGGAACTTGTTTGGTGTTAACTTTTGTACTTTCTATATGCATGACAGTTTCGTTATATTTTAGGAGTTGAGACTCTCTGTGGATTATCCAGAGGTAGTCCGCTGGAAGTCGTTTACAGTCTATTATCCTGCTTTAGAGACAGCCAGCATTTTATTTATATGTTGTGTGTGAACTGCTCTTTGTGGCATTAATTCTCTTGGCGCAAGTGAAGTTGGGAAAAAGTTGTCCCTGTTCTTTCAGGTGTTCAACTTGTCAAGATCATCAAAGTCAAGTAGTGAAATTTCCTTCCAGATATGCAAATCTTAATATTGGTTATAAGGCACAGTGAAAAGTTTGTGGTGTTATTTGACACAGTAATTTTATTGTTGTCTTTTATGTTTAAATTAAATTAAATTTTTTATTTGAATATGAGCTGTTAGAAGGAGATCACTATACCTTGGTGGTAGAGATGACTGGAGGTTATTAACTTGTCCATGCCGTGGTTGATGAAATTTTGTTCAGATAAATTTCCCCTCTTAGTATTCGGGCTAAAGATTAATAAAGCATCTTTTCAGCTTATATTAGATAGCTATAAGTAATACGAGTTCAATTTGATAATAGTCTTCCCTTTGAAATCCGCGGGTTGTTAGACACTGAATCTACCTTCATATGTCCAAGTGACTCCTAGAACTTTTTCTTTTAACAGGTAGGTGTAACCGTTGCAGCTCGTAAATATGACCTTGACTCTGTTGCACCTTTTCAAGCATCAGATATTATGAATCTCCAACCAGTGGTGAAGCATTCTATCCCAGTTAGTTCAGAAGCTAAGGACCTTGTTGAAACAGGAAAGGCTCAATTAGCTGAGGTATTAACTGTTTCAATTGGTTAAAGAAATGGAGATTCTCATGTTAGTCATGGATATCTTGAGAGGCTAGCTGTCAATTTTTTTTGCCTTCTGTTGTACTCTTTAGTTTGTAACTTACCTTGGTGGAATAATATCCTCATACATTTCAGGGTTTGCTTAGTGAGGCCTACACTTTATTTTCCGAAGCATTCACAATACTTCAGCAGGTATATTACTGATTATTTTTTCTCTGCAATGCTTTGAAGTCTTATATTATTTAAGTTCTGATTCCAATAATTTTAAAAATGCAGGTGACGGGTCCGATGCAC-CGGGAAGTTGCCAATTGTTGTCGGTGAGTAGTATTGTGCTCTACACGTCACTCTTTTTGTGAGAGAATATGATTGTGCATTGTAGTCTTTGGTTATTGTGTTTTCTGTCTTTTGCTTTCATTGGTTTTTCTGTCTTATCTTTATTCTTTTCTATAATTTTTTTCTCTTTCAGCTACCTTGCTATGGTTCTATATCATGCTGGAGATATGGCTGGTGCTATAATGCAACAGCACAAGGAACTTATCATAAATGAAAGATGCCTTGGACTGGACCATCCTGACACTGCACACAGGCAATTTTCTTGTCTTTGAACTCTTTTTCTTTCTTTTGCTATATGTTGCCTATTAGCTTGCTGGTGTCGATTTGATGCCGGAAACCTGTATTTCCGGATAATTATGTCTAGTAACGTGAGTTTGGTAATGTTGCTGCAGTTATGGAAACATGGCTCTTTTCTATCATGGTCTTAACCAAACAGAACTTGCATTGAGGCATATGTCACGGGCCTTGCTTCTTCTTGGCTTGTCATCAGGTCCTGATCATCCGGATGTTGCCGCAACATTTATAAATGTTGCAATGATGTACCAAGATATTGGGAAGATGGATACAGCACTTCGTTATCTCCAAGAAGCATTGAAAAAGAATGAACGGTTGCTTGGGGAGGAACATATTCAGACTGCTG-TTTGTTATCATGCTCTGG</genome_strand>
        <mrna_strand>CAAGTATCAG..................................................................................................TTTGAGTTGCCTGAGGATGCAAAAGTGCTGGTAAAGAAAATTCCAGTTGTACGCAATCTCTGTCAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTGTAACCGTTGCAGCTCGTAAATATGACCTTGACTCTGCTGCACCTTTTCAAGCATCAGATATTATGAATCTCCAACCAGTGGTGAAGCATTCTATCCCAGTTAGTCCAGAAGCTAAGGACCTCGTTGAAACAGGGAAGGCTCAATTAGCTGAG.....................................................................................................................................................GGTTTGCTTAGTGAGGCCTACACTTTATTTTCCGAAGCATTCACAATACTTCAGCAG....................................................................................GTGACGGGTCCAATGCACTGGGGAAGTTGCCAATTGTTGTCG.....................................................................................................................................................CTACCTTGCTATGGTTCTATATCATGCTGGAGATATGGCTGGTGCTATAATGCAACAGCACAAGGAACTTATCATAAATGAAAGATGCCTTGGACTGGACCATCCTGACACTGCACACAG...........................................................................................................................................TTATGGAAACATGGCTCTTTTCTACCATGGTCTTAACCAAACAGAACTTGCATTGAGGCATATGTCACGGGCCTTGCTTCTTCTTGGCTTGTCATCAGGTCCTGATCATCCGGATGTTGCTGCAACATTTATAAATGTTGCAATGATGTACCAAGATATTGGAAAGATGGATACAGCACTTCGTTATCTCCAAGAAGCATTGAAAAAGAATGAACGGTTGCTTGGGGAGGAACATATTCAGACTGCTGNTTTGNTATCATGCTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478130" ref_strand="+" ref_description="SGN-E478130 [cSTD-3-C22]">
      <seq>tttttccagaagctaacgacctcgttgaaacagggaaggctcaattagctgagggtttgcttagtgaggcctacactttattttccgaagcattcacaatacttcagcaggtgacgggtccaatgcaccgggaagttgccaattgttgtcgctaccttgctatggttctatatcatgctggagatatggctggtgctataatgcaacagcacaaggaacttatcataaatgaaagatgccttggactggaccatcctgacactgcacacagttatggaaacatggctcttttctatcatggtcttaaccaaacagaacttgcattgaggcatatgtcacgggccttgcttcttcttggcttgtcatcaggtcctgatcatccggatgttgctgcaacatttataaatgttgcaatgatgtaccaagatattggaaagatggatacagcacttcgttatctccaagaagcattgaaaaagaatgaacggttgcttggggaggaacatattcagactgctgtttgttatcatgctctggcaattgcgttcaactgtatgggtgctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="95539" stop="97221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95835" g_stop="95887" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.887"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95888" i_stop="96036" i_length="149">
            <donor d_prob="0.960" d_score="0.90"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96037" g_stop="96093" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="110" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96094" i_stop="96177" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96178" g_stop="96218" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="151" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96219" i_stop="96367" i_length="149">
            <donor d_prob="0.927" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96368" g_stop="96487" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="271" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96488" i_stop="96626" i_length="139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96627" g_stop="96921" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="566" r_length="295" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E478130" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95835" e_stop="95887"/>
          <exon e_start="96037" e_stop="96093"/>
          <exon e_start="96178" e_stop="96218"/>
          <exon e_start="96368" e_stop="96487"/>
          <exon e_start="96627" e_stop="96921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTTCAGAAGCTAAGGACCTTGTTGAAACAGGAAAGGCTCAATTAGCTGAGGTATTAACTGTTTCAATTGGTTAAAGAAATGGAGATTCTCATGTTAGTCATGGATATCTTGAGAGGCTAGCTGTCAATTTTTTTTGCCTTCTGTTGTACTCTTTAGTTTGTAACTTACCTTGGTGGAATAATATCCTCATACATTTCAGGGTTTGCTTAGTGAGGCCTACACTTTATTTTCCGAAGCATTCACAATACTTCAGCAGGTATATTACTGATTATTTTTTCTCTGCAATGCTTTGAAGTCTTATATTATTTAAGTTCTGATTCCAATAATTTTAAAAATGCAGGTGACGGGTCCGATGCACCGGGAAGTTGCCAATTGTTGTCGGTGAGTAGTATTGTGCTCTACACGTCACTCTTTTTGTGAGAGAATATGATTGTGCATTGTAGTCTTTGGTTATTGTGTTTTCTGTCTTTTGCTTTCATTGGTTTTTCTGTCTTATCTTTATTCTTTTCTATAATTTTTTTCTCTTTCAGCTACCTTGCTATGGTTCTATATCATGCTGGAGATATGGCTGGTGCTATAATGCAACAGCACAAGGAACTTATCATAAATGAAAGATGCCTTGGACTGGACCATCCTGACACTGCACACAGGCAATTTTCTTGTCTTTGAACTCTTTTTCTTTCTTTTGCTATATGTTGCCTATTAGCTTGCTGGTGTCGATTTGATGCCGGAAACCTGTATTTCCGGATAATTATGTCTAGTAACGTGAGTTTGGTAATGTTGCTGCAGTTATGGAAACATGGCTCTTTTCTATCATGGTCTTAACCAAACAGAACTTGCATTGAGGCATATGTCACGGGCCTTGCTTCTTCTTGGCTTGTCATCAGGTCCTGATCATCCGGATGTTGCCGCAACATTTATAAATGTTGCAATGATGTACCAAGATATTGGGAAGATGGATACAGCACTTCGTTATCTCCAAGAAGCATTGAAAAAGAATGAACGGTTGCTTGGGGAGGAACATATTCAGACTGCTGTTTGTTATCATGCTCTGGCAATTGCGTTCAACTGTATGGGTGCTTTC</genome_strand>
        <mrna_strand>TTTTTCCAGAAGCTAACGACCTCGTTGAAACAGGGAAGGCTCAATTAGCTGAG.....................................................................................................................................................GGTTTGCTTAGTGAGGCCTACACTTTATTTTCCGAAGCATTCACAATACTTCAGCAG....................................................................................GTGACGGGTCCAATGCACCGGGAAGTTGCCAATTGTTGTCG.....................................................................................................................................................CTACCTTGCTATGGTTCTATATCATGCTGGAGATATGGCTGGTGCTATAATGCAACAGCACAAGGAACTTATCATAAATGAAAGATGCCTTGGACTGGACCATCCTGACACTGCACACAG...........................................................................................................................................TTATGGAAACATGGCTCTTTTCTATCATGGTCTTAACCAAACAGAACTTGCATTGAGGCATATGTCACGGGCCTTGCTTCTTCTTGGCTTGTCATCAGGTCCTGATCATCCGGATGTTGCTGCAACATTTATAAATGTTGCAATGATGTACCAAGATATTGGAAAGATGGATACAGCACTTCGTTATCTCCAAGAAGCATTGAAAAAGAATGAACGGTTGCTTGGGGAGGAACATATTCAGACTGCTGTTTGTTATCATGCTCTGGCAATTGCGTTCAACTGTATGGGTGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262262" ref_strand="+" ref_description="SGN-E262262 [cLEG-56-I4]">
      <seq>ttggactggaccatcctgacactgcacacagttatggaaacatggctcttttctatcatggtcttaaccaaacagaacttgcattgaggcatatgtcacgggccttgcttcttcttggcttgtcatcaggtcctgatcatccggatgttgccgcaacatttataaatgttgcaatgatgtaccaagatattgggaagatggatacagcacttcgttatctccaagaagcattgaaaaagaatgaacggttgcttggggaggaacatattcagactgctgtttgttatcatgctctggcaattgcgttcaactgtatgggtgctttcaagctttcgcaccagcatgaaaagaaaacttatgatatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="96157" stop="97346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96457" g_stop="96487" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96488" i_stop="96626" i_length="139">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96627" g_stop="96936" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="341" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96937" i_stop="97020" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97021" g_stop="97046" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="367" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E262262" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96457" e_stop="96487"/>
          <exon e_start="96627" e_stop="96936"/>
          <exon e_start="97021" e_stop="97046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGACTGGACCATCCTGACACTGCACACAGGCAATTTTCTTGTCTTTGAACTCTTTTTCTTTCTTTTGCTATATGTTGCCTATTAGCTTGCTGGTGTCGATTTGATGCCGGAAACCTGTATTTCCGGATAATTATGTCTAGTAACGTGAGTTTGGTAATGTTGCTGCAGTTATGGAAACATGGCTCTTTTCTATCATGGTCTTAACCAAACAGAACTTGCATTGAGGCATATGTCACGGGCCTTGCTTCTTCTTGGCTTGTCATCAGGTCCTGATCATCCGGATGTTGCCGCAACATTTATAAATGTTGCAATGATGTACCAAGATATTGGGAAGATGGATACAGCACTTCGTTATCTCCAAGAAGCATTGAAAAAGAATGAACGGTTGCTTGGGGAGGAACATATTCAGACTGCTGTTTGTTATCATGCTCTGGCAATTGCGTTCAACTGTATGGGTGCTTTCAAGCTTTCGCACCAGGCATGTACTTTAACTGGACAGTTTACTGTGCTAAGAAAATGATAGTTACTGTTTTAACCATTTTAATTAATTTCTTTTCAACAGCATGAAAAGAAAACTTATGATATACT</genome_strand>
        <mrna_strand>TTGGACTGGACCATCCTGACACTGCACACAG...........................................................................................................................................TTATGGAAACATGGCTCTTTTCTATCATGGTCTTAACCAAACAGAACTTGCATTGAGGCATATGTCACGGGCCTTGCTTCTTCTTGGCTTGTCATCAGGTCCTGATCATCCGGATGTTGCCGCAACATTTATAAATGTTGCAATGATGTACCAAGATATTGGGAAGATGGATACAGCACTTCGTTATCTCCAAGAAGCATTGAAAAAGAATGAACGGTTGCTTGGGGAGGAACATATTCAGACTGCTGTTTGTTATCATGCTCTGGCAATTGCGTTCAACTGTATGGGTGCTTTCAAGCTTTCGCACCAG....................................................................................CATGAAAAGAAAACTTATGATATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462915" ref_strand="+" ref_description="SGN-E462915 [cPRO-13-G11]">
      <seq>ggaccatcctgacactgcacacagttatggaaacatggctcttttctatcatggtcttaaccaaacagaacttgcattgaggcatatgtcacgggccttgcttcttcttggcttgtcatcaggtcctgatcatccggatgttgctgcaacatttataaatgttgcaatgatgtaccaagatattggaaagatggatacagcacttcgttatctccaagaagcattgaaaaagaatgaacggttgcttggggaggaacatattcagactgctgtttgttatcatgctctggcaattgcgttcaactgtatgggtgctttcaagctttcgcaccagcatgaaaagaaaacttatgatatactagccaaacagctgggagaggaggattcaaggacacgcgattctcagaactggatgaaaacatttaagatgcgtgagctgcagatgaatgcgcaaaagcagaaaggtcaatctctgaatgtggcttctgcacagaaggcttatgatattttgaaggctcatcctagcttgttacacgcatttcaagctgctgctgggggtactggtattggtggaatgaaccaatcattaagttcttcagcacttggtgatgggcttcctcggggaagaagagttgatgaaagagctgcacgagctgctgttgaagtacggaaaaagctgcagcaaggggtcttcttgtacgtccccagtggtgttcctgcatcaactttacctcctctttaccagctactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="96164" stop="98118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96464" g_stop="96487" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96488" i_stop="96626" i_length="139">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96627" g_stop="96936" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="334" r_length="310" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96937" i_stop="97020" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97021" g_stop="97200" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="514" r_length="180" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97201" i_stop="97580" i_length="380">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97581" g_stop="97818" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="752" r_length="238" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E462915" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96464" e_stop="96487"/>
          <exon e_start="96627" e_stop="96936"/>
          <exon e_start="97021" e_stop="97200"/>
          <exon e_start="97581" e_stop="97818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCATCCTGACACTGCACACAGGCAATTTTCTTGTCTTTGAACTCTTTTTCTTTCTTTTGCTATATGTTGCCTATTAGCTTGCTGGTGTCGATTTGATGCCGGAAACCTGTATTTCCGGATAATTATGTCTAGTAACGTGAGTTTGGTAATGTTGCTGCAGTTATGGAAACATGGCTCTTTTCTATCATGGTCTTAACCAAACAGAACTTGCATTGAGGCATATGTCACGGGCCTTGCTTCTTCTTGGCTTGTCATCAGGTCCTGATCATCCGGATGTTGCCGCAACATTTATAAATGTTGCAATGATGTACCAAGATATTGGGAAGATGGATACAGCACTTCGTTATCTCCAAGAAGCATTGAAAAAGAATGAACGGTTGCTTGGGGAGGAACATATTCAGACTGCTGTTTGTTATCATGCTCTGGCAATTGCGTTCAACTGTATGGGTGCTTTCAAGCTTTCGCACCAGGCATGTACTTTAACTGGACAGTTTACTGTGCTAAGAAAATGATAGTTACTGTTTTAACCATTTTAATTAATTTCTTTTCAACAGCATGAAAAGAAAACTTATGATATACTAGCCAAACAGCTGGGAGAGGAGGATTCAAGGACACGCGATTCTCAGAACTGGATGAAAACATTTAAGATGCGTGAGCTGCAGATGAATGCACAAAAGCAGAAAGGTCAATCTCTGAATGTGGCTTCTGCACAGAAGGCTTATGATATTTTAAAGGTAACTTTTTCGTAACAGTTTTGTACCCTTTATGATCCTTTGAAGGGATCATTAAATAATGTCTTGACATATTTGCTTAACCTAAACCTTCACCTTGAGGCAGAAATGGAAGGCTTGTTCTGGGGGGATTTAGACTTGCTTTTCTAGTTTTCATTACTTTGTCATTGCTGTCTCTCGCACTAGTTGCTTGTTTAATCCTCTTCAGAAGCCTTGCATCAATTACAATATAATGTATAGGGTCTTGGCTATTCCTTTTTCTTGTTTGATGGCCAATTTGGAGTGGATTTTTCATTCTAGGGTTATGGTTCTAGTTGCCTTGGATTTGCTTTACTATGTCAATGAGAAATTGAATGTTCACACTACTGAGTTGAATATTGCAGGCTCATCCAAGCTTGTTACACGCATTTCAAGCTGCCGCTGGAGGTACTGGTATTGGTGGAATGAACCAATCATTAAGTTCTGCAGTACTTGGTGATGGGCTTCCTCGGGGAAGAGGAGTTGATGAAAGAGCTGCACGAGCTGCTGCTGAAGTACGGAAAAAAGCTGCAGCAAGGGGTCTTCTTGTACGT-CCCAGTGGTGTTCCTGCATCATCTTTACCTCCTCTTACCCAGCTACTCA</genome_strand>
        <mrna_strand>GGACCATCCTGACACTGCACACAG...........................................................................................................................................TTATGGAAACATGGCTCTTTTCTATCATGGTCTTAACCAAACAGAACTTGCATTGAGGCATATGTCACGGGCCTTGCTTCTTCTTGGCTTGTCATCAGGTCCTGATCATCCGGATGTTGCTGCAACATTTATAAATGTTGCAATGATGTACCAAGATATTGGAAAGATGGATACAGCACTTCGTTATCTCCAAGAAGCATTGAAAAAGAATGAACGGTTGCTTGGGGAGGAACATATTCAGACTGCTGTTTGTTATCATGCTCTGGCAATTGCGTTCAACTGTATGGGTGCTTTCAAGCTTTCGCACCAG....................................................................................CATGAAAAGAAAACTTATGATATACTAGCCAAACAGCTGGGAGAGGAGGATTCAAGGACACGCGATTCTCAGAACTGGATGAAAACATTTAAGATGCGTGAGCTGCAGATGAATGCGCAAAAGCAGAAAGGTCAATCTCTGAATGTGGCTTCTGCACAGAAGGCTTATGATATTTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................GCTCATCCTAGCTTGTTACACGCATTTCAAGCTGCTGCTGGGGGTACTGGTATTGGTGGAATGAACCAATCATTAAGTTCTTCAGCACTTGGTGATGGGCTTCCTCGGGGAAGAAGAGTTGATGAAAGAGCTGCACGAGCTGCTGTTGAAGTACGG-AAAAAGCTGCAGCAAGGGGTCTTCTTGTACGTCCCCAGTGGTGTTCCTGCATCAACTTTACCTCCTCTTTACCAGCTACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551112" ref_strand="+" ref_description="SGN-E551112 [TUS-55-F12]">
      <seq>catcctgacactgcacacagttatggaaacatggctcttttctatcatggtcttaaccaaacagaacttgcattgaggcatatgtcacgggccttgcttcttcttggcttgtcatcaggtcctgatcatccggatgttgccgcaacatttataaatgttgcaatgatgtaccaagatattgggaagatggatacagcacttccttatctccaagaagcattgaaaaagaatgaacggttgcttggggaggaacatattcagactgctgtttgttatcatgctctggcaattgcgttcaactgtatgggtgctttcaagctttcgcaccagcatgaaaagaaaacttatgatatactagccaaacagctgggagaggaggattcaaggacacgcgattctcagaactggatgaaaacatttaagatgcgtgagctgcagatgaatgcacaaaagcagaaaggtcaatctctgaatgtggcttctgcacagaaggcttatgatattttaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="96168" stop="97501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96468" g_stop="96487" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96488" i_stop="96626" i_length="139">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96627" g_stop="96936" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="330" r_length="310" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96937" i_stop="97020" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97021" g_stop="97200" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="510" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E551112" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96468" e_stop="96487"/>
          <exon e_start="96627" e_stop="96936"/>
          <exon e_start="97021" e_stop="97200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCTGACACTGCACACAGGCAATTTTCTTGTCTTTGAACTCTTTTTCTTTCTTTTGCTATATGTTGCCTATTAGCTTGCTGGTGTCGATTTGATGCCGGAAACCTGTATTTCCGGATAATTATGTCTAGTAACGTGAGTTTGGTAATGTTGCTGCAGTTATGGAAACATGGCTCTTTTCTATCATGGTCTTAACCAAACAGAACTTGCATTGAGGCATATGTCACGGGCCTTGCTTCTTCTTGGCTTGTCATCAGGTCCTGATCATCCGGATGTTGCCGCAACATTTATAAATGTTGCAATGATGTACCAAGATATTGGGAAGATGGATACAGCACTTCGTTATCTCCAAGAAGCATTGAAAAAGAATGAACGGTTGCTTGGGGAGGAACATATTCAGACTGCTGTTTGTTATCATGCTCTGGCAATTGCGTTCAACTGTATGGGTGCTTTCAAGCTTTCGCACCAGGCATGTACTTTAACTGGACAGTTTACTGTGCTAAGAAAATGATAGTTACTGTTTTAACCATTTTAATTAATTTCTTTTCAACAGCATGAAAAGAAAACTTATGATATACTAGCCAAACAGCTGGGAGAGGAGGATTCAAGGACACGCGATTCTCAGAACTGGATGAAAACATTTAAGATGCGTGAGCTGCAGATGAATGCACAAAAGCAGAAAGGTCAATCTCTGAATGTGGCTTCTGCACAGAAGGCTTATGATATTTTAAAG</genome_strand>
        <mrna_strand>CATCCTGACACTGCACACAG...........................................................................................................................................TTATGGAAACATGGCTCTTTTCTATCATGGTCTTAACCAAACAGAACTTGCATTGAGGCATATGTCACGGGCCTTGCTTCTTCTTGGCTTGTCATCAGGTCCTGATCATCCGGATGTTGCCGCAACATTTATAAATGTTGCAATGATGTACCAAGATATTGGGAAGATGGATACAGCACTTCCTTATCTCCAAGAAGCATTGAAAAAGAATGAACGGTTGCTTGGGGAGGAACATATTCAGACTGCTGTTTGTTATCATGCTCTGGCAATTGCGTTCAACTGTATGGGTGCTTTCAAGCTTTCGCACCAG....................................................................................CATGAAAAGAAAACTTATGATATACTAGCCAAACAGCTGGGAGAGGAGGATTCAAGGACACGCGATTCTCAGAACTGGATGAAAACATTTAAGATGCGTGAGCTGCAGATGAATGCACAAAAGCAGAAAGGTCAATCTCTGAATGTGGCTTCTGCACAGAAGGCTTATGATATTTTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688914" ref_strand="+" ref_description="SGN-E688914 [t3_tus_55_F12]">
      <seq>catcctgacactgcacacagttatggaaacatggctcttttctatcatggtcttaaccaaacagaacttgcattgaggcatatgtcacgggccttgcttcttcttggcttgtcatcaggtcctgatcatccggatgttgccgcaacatttataaatgttgcaatgatgtaccaagatattgggaagatggatacagcacttccttatctccaagaagcattgaaaaagaatgaacggttgcttggggaggaacatattcagactgctgtttgttatcatgctctggcaattgcgttcaactgtatgggtgctttcaagctttcgcaccagcatgaaaagaaaacttatgatatactagccaaacagctgggagaggaggattcaaggacacgcgattctcagaactggatgaaaacatttaagatgcgtgagctgcagatgaatgcacaaaagcagaaaggtcaatctctgaatgtggcttctgcacagaaggcttatgatattttaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="96168" stop="97501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96468" g_stop="96487" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96488" i_stop="96626" i_length="139">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96627" g_stop="96936" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="330" r_length="310" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96937" i_stop="97020" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97021" g_stop="97200" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="510" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E688914" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96468" e_stop="96487"/>
          <exon e_start="96627" e_stop="96936"/>
          <exon e_start="97021" e_stop="97200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCTGACACTGCACACAGGCAATTTTCTTGTCTTTGAACTCTTTTTCTTTCTTTTGCTATATGTTGCCTATTAGCTTGCTGGTGTCGATTTGATGCCGGAAACCTGTATTTCCGGATAATTATGTCTAGTAACGTGAGTTTGGTAATGTTGCTGCAGTTATGGAAACATGGCTCTTTTCTATCATGGTCTTAACCAAACAGAACTTGCATTGAGGCATATGTCACGGGCCTTGCTTCTTCTTGGCTTGTCATCAGGTCCTGATCATCCGGATGTTGCCGCAACATTTATAAATGTTGCAATGATGTACCAAGATATTGGGAAGATGGATACAGCACTTCGTTATCTCCAAGAAGCATTGAAAAAGAATGAACGGTTGCTTGGGGAGGAACATATTCAGACTGCTGTTTGTTATCATGCTCTGGCAATTGCGTTCAACTGTATGGGTGCTTTCAAGCTTTCGCACCAGGCATGTACTTTAACTGGACAGTTTACTGTGCTAAGAAAATGATAGTTACTGTTTTAACCATTTTAATTAATTTCTTTTCAACAGCATGAAAAGAAAACTTATGATATACTAGCCAAACAGCTGGGAGAGGAGGATTCAAGGACACGCGATTCTCAGAACTGGATGAAAACATTTAAGATGCGTGAGCTGCAGATGAATGCACAAAAGCAGAAAGGTCAATCTCTGAATGTGGCTTCTGCACAGAAGGCTTATGATATTTTAAAG</genome_strand>
        <mrna_strand>CATCCTGACACTGCACACAG...........................................................................................................................................TTATGGAAACATGGCTCTTTTCTATCATGGTCTTAACCAAACAGAACTTGCATTGAGGCATATGTCACGGGCCTTGCTTCTTCTTGGCTTGTCATCAGGTCCTGATCATCCGGATGTTGCCGCAACATTTATAAATGTTGCAATGATGTACCAAGATATTGGGAAGATGGATACAGCACTTCCTTATCTCCAAGAAGCATTGAAAAAGAATGAACGGTTGCTTGGGGAGGAACATATTCAGACTGCTGTTTGTTATCATGCTCTGGCAATTGCGTTCAACTGTATGGGTGCTTTCAAGCTTTCGCACCAG....................................................................................CATGAAAAGAAAACTTATGATATACTAGCCAAACAGCTGGGAGAGGAGGATTCAAGGACACGCGATTCTCAGAACTGGATGAAAACATTTAAGATGCGTGAGCTGCAGATGAATGCACAAAAGCAGAAAGGTCAATCTCTGAATGTGGCTTCTGCACAGAAGGCTTATGATATTTTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604260" ref_strand="+" ref_description="SGN-E604260 [74393]">
      <seq>ttgcattgaggcatatgtcacgggccttgcttcttcttggcttgtcatcaggtcctgatcatccggatgttgctgcaacatttataaatgttgcaatgatgtaccaagatattggaaagatggatacagcacttcgttatctccaagaagcattgaaaaagaatgaacggttgcttggggaggaacatattcagactgctgtttgttatcatgctctggcaattgcgttcaactgtatgggtgctttcaagctttcgcaccagcatgaaaagaaaacttatgatatactagccaaacagctgggagaggaggattcaaggacacgcgattctcagaactggatgaaaacatttaagatgcgtgagctgcagatgaatgcgcaaaagcagaaaggtcaatctctgaatgtggcttctgcacagaaggcttatgatattttgaaggctcatcctagcttgttacacgcatttcaagctgctgctgggggtactggtattggtggaatgaaccaatcattaagttcttcagcacttggtgatgggcttcctcggggaagaggagttgatgaaagagctgcacgagctgctgctgaagtacggaaaaaaagcttgcagcaaggggtcttcttgtacgtcccagtggtgttcctgcatcaattttacctcttcttaccagctactcaatgtaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="96374" stop="98126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96674" g_stop="96936" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96937" i_stop="97020" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97021" g_stop="97200" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="443" r_length="180" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97201" i_stop="97580" i_length="380">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97581" g_stop="97826" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="690" r_length="247" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E604260" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96674" e_stop="96936"/>
          <exon e_start="97021" e_stop="97200"/>
          <exon e_start="97581" e_stop="97826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCATTGAGGCATATGTCACGGGCCTTGCTTCTTCTTGGCTTGTCATCAGGTCCTGATCATCCGGATGTTGCCGCAACATTTATAAATGTTGCAATGATGTACCAAGATATTGGGAAGATGGATACAGCACTTCGTTATCTCCAAGAAGCATTGAAAAAGAATGAACGGTTGCTTGGGGAGGAACATATTCAGACTGCTGTTTGTTATCATGCTCTGGCAATTGCGTTCAACTGTATGGGTGCTTTCAAGCTTTCGCACCAGGCATGTACTTTAACTGGACAGTTTACTGTGCTAAGAAAATGATAGTTACTGTTTTAACCATTTTAATTAATTTCTTTTCAACAGCATGAAAAGAAAACTTATGATATACTAGCCAAACAGCTGGGAGAGGAGGATTCAAGGACACGCGATTCTCAGAACTGGATGAAAACATTTAAGATGCGTGAGCTGCAGATGAATGCACAAAAGCAGAAAGGTCAATCTCTGAATGTGGCTTCTGCACAGAAGGCTTATGATATTTTAAAGGTAACTTTTTCGTAACAGTTTTGTACCCTTTATGATCCTTTGAAGGGATCATTAAATAATGTCTTGACATATTTGCTTAACCTAAACCTTCACCTTGAGGCAGAAATGGAAGGCTTGTTCTGGGGGGATTTAGACTTGCTTTTCTAGTTTTCATTACTTTGTCATTGCTGTCTCTCGCACTAGTTGCTTGTTTAATCCTCTTCAGAAGCCTTGCATCAATTACAATATAATGTATAGGGTCTTGGCTATTCCTTTTTCTTGTTTGATGGCCAATTTGGAGTGGATTTTTCATTCTAGGGTTATGGTTCTAGTTGCCTTGGATTTGCTTTACTATGTCAATGAGAAATTGAATGTTCACACTACTGAGTTGAATATTGCAGGCTCATCCAAGCTTGTTACACGCATTTCAAGCTGCCGCTGGAGGTACTGGTATTGGTGGAATGAACCAATCATTAAGTTCTGCAGTACTTGGTGATGGGCTTCCTCGGGGAAGAGGAGTTGATGAAAGAGCTGCACGAGCTGCTGCTGAAGTACGG-AAAAAAGC-TGCAGCAAGGGGTCTTCTTGTACGTCCCAGTGGTGTTCCTGCATCATCTTTACCTCCTCTTACCCAGCTACTCAATGTAATA</genome_strand>
        <mrna_strand>TTGCATTGAGGCATATGTCACGGGCCTTGCTTCTTCTTGGCTTGTCATCAGGTCCTGATCATCCGGATGTTGCTGCAACATTTATAAATGTTGCAATGATGTACCAAGATATTGGAAAGATGGATACAGCACTTCGTTATCTCCAAGAAGCATTGAAAAAGAATGAACGGTTGCTTGGGGAGGAACATATTCAGACTGCTGTTTGTTATCATGCTCTGGCAATTGCGTTCAACTGTATGGGTGCTTTCAAGCTTTCGCACCAG....................................................................................CATGAAAAGAAAACTTATGATATACTAGCCAAACAGCTGGGAGAGGAGGATTCAAGGACACGCGATTCTCAGAACTGGATGAAAACATTTAAGATGCGTGAGCTGCAGATGAATGCGCAAAAGCAGAAAGGTCAATCTCTGAATGTGGCTTCTGCACAGAAGGCTTATGATATTTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................GCTCATCCTAGCTTGTTACACGCATTTCAAGCTGCTGCTGGGGGTACTGGTATTGGTGGAATGAACCAATCATTAAGTTCTTCAGCACTTGGTGATGGGCTTCCTCGGGGAAGAGGAGTTGATGAAAGAGCTGCACGAGCTGCTGCTGAAGTACGGAAAAAAAGCTTGCAGCAAGGGGTCTTCTTGTACGTCCCAGTGGTGTTCCTGCATCAATTTTACCTCTTCTTA-CCAGCTACTCAATGTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455199" ref_strand="+" ref_description="SGN-E455199 [cSTS-25-J13]">
      <seq>gcttcttcttggcttgtcatcaggtcctgatcatccggatgttgctgcaacatttataaatgttgcaatgatgtaccaagatattggaaagatggatacagcacttcgttatctccaagaagcattgaaaaagaatgaacggttgcttggggaggaacatattcagactgctgtttgttatcatgctctggcaattgcgttcaactgtatgggtgctttcaagctttcgcaccagcatgaaaagaaaacttatgatatactagccaaacagctgggagaggaggattcaaggacacgcgattctcagaactggatgaaaacatttaagatgcgtgagctgcagatgaatgcgcaaaagcagaaaggtcaatctctgaatgtggcttctgcacagaaggcttatgatattttgaaggctcatcctagcttgttacacgcatttcaagctgctgctggaggtactggtattggtggaatgaaccaatcattaagttcttcagcacttggtgatgggcttcctcggggaagaggagttgatgaaagagctgcacgagctgctgctgaagtacggaaaaaagctgcagcaaggggtcttcttgtacgtcccagtggtgttcctgcatcaactttacctcctcttacccagctactcaatgtaataaattctggcacaacaccggatgctgcaaatcctagtggaactaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="96402" stop="98171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96702" g_stop="96936" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96937" i_stop="97020" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97021" g_stop="97200" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="415" r_length="180" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97201" i_stop="97580" i_length="380">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97581" g_stop="97871" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="706" r_length="291" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E455199" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96702" e_stop="96936"/>
          <exon e_start="97021" e_stop="97200"/>
          <exon e_start="97581" e_stop="97871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTTCTTGGCTTGTCATCAGGTCCTGATCATCCGGATGTTGCCGCAACATTTATAAATGTTGCAATGATGTACCAAGATATTGGGAAGATGGATACAGCACTTCGTTATCTCCAAGAAGCATTGAAAAAGAATGAACGGTTGCTTGGGGAGGAACATATTCAGACTGCTGTTTGTTATCATGCTCTGGCAATTGCGTTCAACTGTATGGGTGCTTTCAAGCTTTCGCACCAGGCATGTACTTTAACTGGACAGTTTACTGTGCTAAGAAAATGATAGTTACTGTTTTAACCATTTTAATTAATTTCTTTTCAACAGCATGAAAAGAAAACTTATGATATACTAGCCAAACAGCTGGGAGAGGAGGATTCAAGGACACGCGATTCTCAGAACTGGATGAAAACATTTAAGATGCGTGAGCTGCAGATGAATGCACAAAAGCAGAAAGGTCAATCTCTGAATGTGGCTTCTGCACAGAAGGCTTATGATATTTTAAAGGTAACTTTTTCGTAACAGTTTTGTACCCTTTATGATCCTTTGAAGGGATCATTAAATAATGTCTTGACATATTTGCTTAACCTAAACCTTCACCTTGAGGCAGAAATGGAAGGCTTGTTCTGGGGGGATTTAGACTTGCTTTTCTAGTTTTCATTACTTTGTCATTGCTGTCTCTCGCACTAGTTGCTTGTTTAATCCTCTTCAGAAGCCTTGCATCAATTACAATATAATGTATAGGGTCTTGGCTATTCCTTTTTCTTGTTTGATGGCCAATTTGGAGTGGATTTTTCATTCTAGGGTTATGGTTCTAGTTGCCTTGGATTTGCTTTACTATGTCAATGAGAAATTGAATGTTCACACTACTGAGTTGAATATTGCAGGCTCATCCAAGCTTGTTACACGCATTTCAAGCTGCCGCTGGAGGTACTGGTATTGGTGGAATGAACCAATCATTAAGTTCTGCAGTACTTGGTGATGGGCTTCCTCGGGGAAGAGGAGTTGATGAAAGAGCTGCACGAGCTGCTGCTGAAGTACGGAAAAAAGCTGCAGCAAGGGGTCTTCTTGTACGTCCCAGTGGTGTTCCTGCATCATCTTTACCTCCTCTTACCCAGCTACTCAATGTAATAAATTCTGGCACAACACCGGATGCTGCAAATCCTAGTGGAACTAAT</genome_strand>
        <mrna_strand>GCTTCTTCTTGGCTTGTCATCAGGTCCTGATCATCCGGATGTTGCTGCAACATTTATAAATGTTGCAATGATGTACCAAGATATTGGAAAGATGGATACAGCACTTCGTTATCTCCAAGAAGCATTGAAAAAGAATGAACGGTTGCTTGGGGAGGAACATATTCAGACTGCTGTTTGTTATCATGCTCTGGCAATTGCGTTCAACTGTATGGGTGCTTTCAAGCTTTCGCACCAG....................................................................................CATGAAAAGAAAACTTATGATATACTAGCCAAACAGCTGGGAGAGGAGGATTCAAGGACACGCGATTCTCAGAACTGGATGAAAACATTTAAGATGCGTGAGCTGCAGATGAATGCGCAAAAGCAGAAAGGTCAATCTCTGAATGTGGCTTCTGCACAGAAGGCTTATGATATTTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................GCTCATCCTAGCTTGTTACACGCATTTCAAGCTGCTGCTGGAGGTACTGGTATTGGTGGAATGAACCAATCATTAAGTTCTTCAGCACTTGGTGATGGGCTTCCTCGGGGAAGAGGAGTTGATGAAAGAGCTGCACGAGCTGCTGCTGAAGTACGGAAAAAAGCTGCAGCAAGGGGTCTTCTTGTACGTCCCAGTGGTGTTCCTGCATCAACTTTACCTCCTCTTACCCAGCTACTCAATGTAATAAATTCTGGCACAACACCGGATGCTGCAAATCCTAGTGGAACTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321171" ref_strand="+" ref_description="SGN-E321171 [cTOB-13-N11]">
      <seq>gcagaacctggatgaaaaccatttaagatgcgtgagctgcagatgaatgccaccaaaagcagaaaggtcaatctctgaatgtggcttctgcaccagaagagcttatgatattttaaaggctcatccaagcttgttacaccgccatttcaagctgccgctggaggtacctggtattggtggaatgaaccaatcattaagttctgcagtaccttggtgatgggcttcctcggggaagaggagttgatgaaagaactgcaccgagcctgctgctgaagtaccggaaaaaagctgcagcaaggggtcttcttgtaccgtcccagtggtgttcctgcatcatctttacctcctcttacccagctacctcaatgtaataaattctggcaccaacaccggatgctgcaaatcctagtggaactaatgaagaaaagaaagaagcaaacagtaattcttctaatggatctggagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="96790" stop="98220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97089" g_stop="97200" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97201" i_stop="97580" i_length="380">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97581" g_stop="97920" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="468" r_length="350" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E321171" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97089" e_stop="97200"/>
          <exon e_start="97581" e_stop="97920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAA-CTGGATGAAAA-CATTTAAGATGCGTGAGCTGCAGATGAATG-CA-CAAAAGCAGAAAGGTCAATCTCTGAATGTGGCTTCTGCAC-AGAAG-GCTTATGATATTTTAAAGGTAACTTTTTCGTAACAGTTTTGTACCCTTTATGATCCTTTGAAGGGATCATTAAATAATGTCTTGACATATTTGCTTAACCTAAACCTTCACCTTGAGGCAGAAATGGAAGGCTTGTTCTGGGGGGATTTAGACTTGCTTTTCTAGTTTTCATTACTTTGTCATTGCTGTCTCTCGCACTAGTTGCTTGTTTAATCCTCTTCAGAAGCCTTGCATCAATTACAATATAATGTATAGGGTCTTGGCTATTCCTTTTTCTTGTTTGATGGCCAATTTGGAGTGGATTTTTCATTCTAGGGTTATGGTTCTAGTTGCCTTGGATTTGCTTTACTATGTCAATGAGAAATTGAATGTTCACACTACTGAGTTGAATATTGCAGGCTCATCCAAGCTTGTTACA-CG-CATTTCAAGCTGCCGCTGGAGGTA-CTGGTATTGGTGGAATGAACCAATCATTAAGTTCTGCAGTA-CTTGGTGATGGGCTTCCTCGGGGAAGAGGAGTTGATGAAAGAGCTGCA-CGAG-CTGCTGCTGAAGTA-CGGAAAAAAGCTGCAGCAAGGGGTCTTCTTGTA-CGTCCCAGTGGTGTTCCTGCATCATCTTTACCTCCTCTTACCCAGCTA-CTCAATGTAATAAATTCTGGCA-CAACACCGGATGCTGCAAATCCTAGTGGAACTAATGAAGAAAAGAAAGAAGCAAACAGTAATTCTTCTAATGGATCTGGAGATG</genome_strand>
        <mrna_strand>GCAGAACCTGGATGAAAACCATTTAAGATGCGTGAGCTGCAGATGAATGCCACCAAAAGCAGAAAGGTCAATCTCTGAATGTGGCTTCTGCACCAGAAGAGCTTATGATATTTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................GCTCATCCAAGCTTGTTACACCGCCATTTCAAGCTGCCGCTGGAGGTACCTGGTATTGGTGGAATGAACCAATCATTAAGTTCTGCAGTACCTTGGTGATGGGCTTCCTCGGGGAAGAGGAGTTGATGAAAGAACTGCACCGAGCCTGCTGCTGAAGTACCGGAAAAAAGCTGCAGCAAGGGGTCTTCTTGTACCGTCCCAGTGGTGTTCCTGCATCATCTTTACCTCCTCTTACCCAGCTACCTCAATGTAATAAATTCTGGCACCAACACCGGATGCTGCAAATCCTAGTGGAACTAATGAAGAAAAGAAAGAAGCAAACAGTAATTCTTCTAATGGATCTGGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598813" ref_strand="+" ref_description="SGN-E598813 [51787]">
      <seq>tgaaggctcatcctagcttgttacacgcatttcaagctgctgctgggggtactggtattggtggaatgaaccaatcattaagttcttcagcacttggtgatgggcttcctcggggaagaggagttgatgaaagagctgcacgagctgctgttgaagtacggaaaaaagctgcagcaaggggtcttcttgtacgtcccagtggtgttcctgcatcaactttacctcctcttacccagctactcaatgtaataaattctggcacaacaccggatgctgcaaatcctagtggaactaatgaagaaaagaaagaagcaaacagtaattcttctaatggatctggagatacccaagcagacctatccaaagcagaggaacaagatcaaactcctgttggtttaggaacaggtttgggggcgttggataccaagaaacaaaaatcaaaagtgaaagctgcatcttgaagcgtatattgcagaatgtactaacaaacatgccaatggccagttcgagcatatcatggattttcgcttgcagccacctcattcttcaggtactcactgcacgggtgaacgcttatacttcgattccattcttacaataagtctctcatggagatttaagtattcgagctgtagttcctctcatcttgattattattgctgagatgacataacttgtaggcctagtttgagaagataggtttagtatgcattgtttggtgttttgaataatgttaagtagagaggtcatcatctgtctgggtgttgatgtcatcctaaaattttttgaccttcttggtcattccctttccctcgtgtcctgggcatgtattatctagtgagtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="97276" stop="98669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97576" g_stop="98363" g_length="788"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="786" r_length="786" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E598813" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E598813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97576" e_stop="98363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGGCTCATCCAAGCTTGTTACACGCATTTCAAGCTGCCGCTGGAGGTACTGGTATTGGTGGAATGAACCAATCATTAAGTTCTGCAGTACTTGGTGATGGGCTTCCTCGGGGAAGAGGAGTTGATGAAAGAGCTGCACGAGCTGCTGCTGAAGTACGGAAAAAAGCTGCAGCAAGGGGTCTTCTTGTACGTCCCAGTGGTGTTCCTGCATCATCTTTACCTCCTCTTACCCAGCTACTCAATGTAATAAATTCTGGCACAACACCGGATGCTGCAAATCCTAGTGGAACTAATGAAGAAAAGAAAGAAGCAAACAGTAATTCTTCTAATGGATCTGGAGATGCCCAAGCAGACTTATCCAAAGCAGGGGAACAAGATCAAACTCCTGTTGGTTTAGGGACAGGTTTGGGGGCGTTGGATACCAAGAAGCAAAAATCAAAAGTGAAAGCTGCATCTTGAAGTGTATATTGCGGAATGTACTAACAAACATGTCAATGGCCAGTTCTAGCATATCATGGATTTTCGCTTGCAGCCACCTCATGCTTCAGGTACTCACTGCACGGGTGAACGCTTATACTTCTATTCCATTCTTACAATAAG--TCTCATGGAGATTTAAGTATTCGAGCTGTAGTTCCTCTCATCTTGATTATTATTGCTGAGATGACATAACTTGTAGGCCTAGTTTTGAGAAGATAGGTTTAGTATGCATTATTTTGGTGTTTTGAATAATGTTAAGTAGAGAGGTCCATCATCTGTTTTGGGTGTTGATGTCATCCTAAAATTTTT</genome_strand>
        <mrna_strand>TGAAGGCTCATCCTAGCTTGTTACACGCATTTCAAGCTGCTGCTGGGGGTACTGGTATTGGTGGAATGAACCAATCATTAAGTTCTTCAGCACTTGGTGATGGGCTTCCTCGGGGAAGAGGAGTTGATGAAAGAGCTGCACGAGCTGCTGTTGAAGTACGGAAAAAAGCTGCAGCAAGGGGTCTTCTTGTACGTCCCAGTGGTGTTCCTGCATCAACTTTACCTCCTCTTACCCAGCTACTCAATGTAATAAATTCTGGCACAACACCGGATGCTGCAAATCCTAGTGGAACTAATGAAGAAAAGAAAGAAGCAAACAGTAATTCTTCTAATGGATCTGGAGATACCCAAGCAGACCTATCCAAAGCAGAGGAACAAGATCAAACTCCTGTTGGTTTAGGAACAGGTTTGGGGGCGTTGGATACCAAGAAACAAAAATCAAAAGTGAAAGCTGCATCTTGAAGCGTATATTGCAGAATGTACTAACAAACATGCCAATGGCCAGTTCGAGCATATCATGGATTTTCGCTTGCAGCCACCTCATTCTTCAGGTACTCACTGCACGGGTGAACGCTTATACTTCGATTCCATTCTTACAATAAGTCTCTCATGGAGATTTAAGTATTCGAGCTGTAGTTCCTCTCATCTTGATTATTATTGCTGAGATGACATAACTTGTAGGCCTAG-TTTGAGAAGATAGGTTTAGTATGCATT-GTTTGGTGTTTTGAATAATGTTAAGTAGAGAGGT-CATCATCTG-TCTGGGTGTTGATGTCATCCTAAAATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598812" ref_strand="+" ref_description="SGN-E598812 [51786]">
      <seq>tgaaggctcatcctagcttgttacacgcatttcaagctgctgctgggggtactggtattggtggaatgaaccaatcattaagttcttcagcacttggtgatgggcttcctcggggaagaggagttgatgaaagagctgcacgagctgctgttgaagtacggaaaaaagctgcagcaaggggtcttcttgtacgtcccagtggtgttcctgcatcaactttacctcctcttacccagctactcaatgtaataaattctggcacaacaccggatgctgcaaatcctagtggaactaatgaagaaaagaaagaagcaaacagtaattcttctaatggatctggagatacccaagcagacctatccaaagcagaggaacaagatcaaactcctgttggtttaggaacaggtttgggggcgttggataccaagaaacaaaaatcaaaagtgaaagctgcatcttgaagcgtatattgcagaatgtactaacaaacatgccaatggccagttcgagcatatcatggattttcgcttgcagccacctcattcttcaggtactcactgcacgggtgaacgcttatacttcgattccattcttacaataagtctctcatggagatttaagtattcgagctgtagttcctctcatcttgattattattgctgagatgacataacttgtaggcctagtttgagaagataggtttagtatgcattgtctaggtgtttggaataatgttaagtagagaggtccatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="97276" stop="98628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97576" g_stop="98328" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="754" r_length="754" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E598812" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E598812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97576" e_stop="98328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGGCTCATCCAAGCTTGTTACACGCATTTCAAGCTGCCGCTGGAGGTACTGGTATTGGTGGAATGAACCAATCATTAAGTTCTGCAGTACTTGGTGATGGGCTTCCTCGGGGAAGAGGAGTTGATGAAAGAGCTGCACGAGCTGCTGCTGAAGTACGGAAAAAAGCTGCAGCAAGGGGTCTTCTTGTACGTCCCAGTGGTGTTCCTGCATCATCTTTACCTCCTCTTACCCAGCTACTCAATGTAATAAATTCTGGCACAACACCGGATGCTGCAAATCCTAGTGGAACTAATGAAGAAAAGAAAGAAGCAAACAGTAATTCTTCTAATGGATCTGGAGATGCCCAAGCAGACTTATCCAAAGCAGGGGAACAAGATCAAACTCCTGTTGGTTTAGGGACAGGTTTGGGGGCGTTGGATACCAAGAAGCAAAAATCAAAAGTGAAAGCTGCATCTTGAAGTGTATATTGCGGAATGTACTAACAAACATGTCAATGGCCAGTTCTAGCATATCATGGATTTTCGCTTGCAGCCACCTCATGCTTCAGGTACTCACTGCACGGGTGAACGCTTATACTTCTATTCCATTCTTACAATAAG--TCTCATGGAGATTTAAGTATTCGAGCTGTAGTTCCTCTCATCTTGATTATTATTGCTGAGATGACATAACTTGTAGGCCTAGTTTTGAGAAGATAGGTTTAGTATGCATTATTTTGGTGTTTTGAATAATGTTAAGTAGAGAGGTCCATCA</genome_strand>
        <mrna_strand>TGAAGGCTCATCCTAGCTTGTTACACGCATTTCAAGCTGCTGCTGGGGGTACTGGTATTGGTGGAATGAACCAATCATTAAGTTCTTCAGCACTTGGTGATGGGCTTCCTCGGGGAAGAGGAGTTGATGAAAGAGCTGCACGAGCTGCTGTTGAAGTACGGAAAAAAGCTGCAGCAAGGGGTCTTCTTGTACGTCCCAGTGGTGTTCCTGCATCAACTTTACCTCCTCTTACCCAGCTACTCAATGTAATAAATTCTGGCACAACACCGGATGCTGCAAATCCTAGTGGAACTAATGAAGAAAAGAAAGAAGCAAACAGTAATTCTTCTAATGGATCTGGAGATACCCAAGCAGACCTATCCAAAGCAGAGGAACAAGATCAAACTCCTGTTGGTTTAGGAACAGGTTTGGGGGCGTTGGATACCAAGAAACAAAAATCAAAAGTGAAAGCTGCATCTTGAAGCGTATATTGCAGAATGTACTAACAAACATGCCAATGGCCAGTTCGAGCATATCATGGATTTTCGCTTGCAGCCACCTCATTCTTCAGGTACTCACTGCACGGGTGAACGCTTATACTTCGATTCCATTCTTACAATAAGTCTCTCATGGAGATTTAAGTATTCGAGCTGTAGTTCCTCTCATCTTGATTATTATTGCTGAGATGACATAACTTGTAGGCCTAG-TTTGAGAAGATAGGTTTAGTATGCATTGTCTAGGTGTTTGGAATAATGTTAAGTAGAGAGGTCCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256053" ref_strand="+" ref_description="SGN-E256053 [cLEG-35-H14]">
      <seq>gcaaatcctagtggaactaatgaagaaaagaaagaagcaaacagtaattcttctaatggatctggagatgcccaagcagacttatccaaagcaggggaacaagatcaaactcctgttggtttagggacaggtttgggggcgttggataccaagaagcaaaaatcaaaagtgaaagctgcatcttgaagtgtatattgcggaatgtactaacaaacatgtcaatggccagttctagcatatcatggattttcgcttgcagccacctcatgcttcaggtactcactgcacgggtgaacgcttatacttctattccattcttacaataagtctcatggagatttaagtattcgagctgtagttcctctcatcttgattattattgctgagatgacataacttgtaggcctagttttgagaagataggtttagtatgcattattttggtgttttgaataatgttaagtagagaggtccatcatctgttttgggtgttgatgtcatcctaaaatttttgacctttattcattcccattacctcgtgagtgaagctgcccacccattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="97551" stop="98712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97851" g_stop="98412" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E256053" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97851" e_stop="98412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATCCTAGTGGAACTAATGAAGAAAAGAAAGAAGCAAACAGTAATTCTTCTAATGGATCTGGAGATGCCCAAGCAGACTTATCCAAAGCAGGGGAACAAGATCAAACTCCTGTTGGTTTAGGGACAGGTTTGGGGGCGTTGGATACCAAGAAGCAAAAATCAAAAGTGAAAGCTGCATCTTGAAGTGTATATTGCGGAATGTACTAACAAACATGTCAATGGCCAGTTCTAGCATATCATGGATTTTCGCTTGCAGCCACCTCATGCTTCAGGTACTCACTGCACGGGTGAACGCTTATACTTCTATTCCATTCTTACAATAAGTCTCATGGAGATTTAAGTATTCGAGCTGTAGTTCCTCTCATCTTGATTATTATTGCTGAGATGACATAACTTGTAGGCCTAGTTTTGAGAAGATAGGTTTAGTATGCATTATTTTGGTGTTTTGAATAATGTTAAGTAGAGAGGTCCATCATCTGTTTTGGGTGTTGATGTCATCCTAAAATTTTTGACCTTTATTCATTCCCATTACCTCGTGAGTGAAGCTGCCCACCCATTT</genome_strand>
        <mrna_strand>GCAAATCCTAGTGGAACTAATGAAGAAAAGAAAGAAGCAAACAGTAATTCTTCTAATGGATCTGGAGATGCCCAAGCAGACTTATCCAAAGCAGGGGAACAAGATCAAACTCCTGTTGGTTTAGGGACAGGTTTGGGGGCGTTGGATACCAAGAAGCAAAAATCAAAAGTGAAAGCTGCATCTTGAAGTGTATATTGCGGAATGTACTAACAAACATGTCAATGGCCAGTTCTAGCATATCATGGATTTTCGCTTGCAGCCACCTCATGCTTCAGGTACTCACTGCACGGGTGAACGCTTATACTTCTATTCCATTCTTACAATAAGTCTCATGGAGATTTAAGTATTCGAGCTGTAGTTCCTCTCATCTTGATTATTATTGCTGAGATGACATAACTTGTAGGCCTAGTTTTGAGAAGATAGGTTTAGTATGCATTATTTTGGTGTTTTGAATAATGTTAAGTAGAGAGGTCCATCATCTGTTTTGGGTGTTGATGTCATCCTAAAATTTTTGACCTTTATTCATTCCCATTACCTCGTGAGTGAAGCTGCCCACCCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323857" ref_strand="+" ref_description="SGN-E323857 [cTOC-5-N23]">
      <seq>ttttttttttttttacagaagaacgctttcattccaacgataaataagtaacaaaacagaaagtctaactttaaccagaaacgataaagtgtccaagaaagagcacctttcaactgaaatgggtgggcagcttcactcacgaggtaatgggaatgaataaaggtcaaaaattttaggatgacatcaacacccaaaacagatgatggacctctctacttaacattattcaaaacaccaaaataatgcatactaaacctatcttctcaaaactaggcctacaagttatgtcatctcagcaataataatcaagatgagaggaactacagctcgaatacttaaatctccatgagacttattgtaagaatggaatagaagtataagcgttcacccgtgcagtgagtacctgaagcatgaggtggctgcaagcgaaaatccatgatatgctagaactggccattgacatgtttgttagtacattccgcaatatacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="98819" stop="97738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98528" g_stop="98038" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E323857" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98528" e_stop="98038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTCACCTTAATACAGAAAAACGCTTTCATTCCAACGATAAATAAGTAACAAAACAGAAAGTCTAACTTTAACCAGAAACGATAAAGTGTCCAAGAAAGAGCACCTTTCAACTGAAATGGGTGGGCAGCTTCACTCACGAGGTAATGGGAATGAATAAAGGTCAAAAATTTTAGGATGACATCAACACCCAAAACAGATGATGGACCTCTCTACTTAACATTATTCAAAACACCAAAATAATGCATACTAAACCTATCTTCTCAAAACTAGGCCTACAAGTTATGTCATCTCAGCAATAATAATCAAGATGAGAGGAACTACAGCTCGAATACTTAAATCTCCATGAGACTTATTGTAAGAATGGAATAGAAGTATAAGCGTTCACCCGTGCAGTGAGTACCTGAAGCATGAGGTGGCTGCAAGCGAAAATCCATGATATGCTAGAACTGGCCATTGACATGTTTGTTAGTACATTCCGCAATATACAC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTACAGAAGAACGCTTTCATTCCAACGATAAATAAGTAACAAAACAGAAAGTCTAACTTTAACCAGAAACGATAAAGTGTCCAAGAAAGAGCACCTTTCAACTGAAATGGGTGGGCAGCTTCACTCACGAGGTAATGGGAATGAATAAAGGTCAAAAATTTTAGGATGACATCAACACCCAAAACAGATGATGGACCTCTCTACTTAACATTATTCAAAACACCAAAATAATGCATACTAAACCTATCTTCTCAAAACTAGGCCTACAAGTTATGTCATCTCAGCAATAATAATCAAGATGAGAGGAACTACAGCTCGAATACTTAAATCTCCATGAGACTTATTGTAAGAATGGAATAGAAGTATAAGCGTTCACCCGTGCAGTGAGTACCTGAAGCATGAGGTGGCTGCAAGCGAAAATCCATGATATGCTAGAACTGGCCATTGACATGTTTGTTAGTACATTCCGCAATATACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351826" ref_strand="+" ref_description="SGN-E351826 [cTOS-8-O13]">
      <seq>gagggcatggcacagtgcttacaaggtaggttaggggatataggtttgagtcaaaagtgtgtactatgacgtattctttctctcatgagctggggaacttagccagagcaattttggggtttggtcattaccattttatcagtttcctttacattcgagcgaggatttaattgttgcttgatggaggaggggacaggttggttatagtattattattgtgacattgagataatgtagcacttgatctgcaacttagtgttgtatataaatatgatgaaacaaataaatgtttctcaagggaagtggaatgttacctgccattcatcctttttttttgcacttattgaatagaataacagaactggacgattctgaaccgagtagtagactcgattaagctatgtaatatcacttttttagaagagtttgaagcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="102224" stop="101189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101924" g_stop="101489" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E351826" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101924" e_stop="101489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGCATGGCACAGTGCTTACAAGGTAGGTTAGGGGATATAGGTTTGAGTCAAAAGTGTGTACTATGACGTATTCTTTCTCTCATGAGCTGGGGAACTTAGCCAGAGCAATTTTGGGGTTTGGTCATTACCATTTTATCAGTTTCCTTTACATTCGAGCGAGGATTTAATTGTTGCTTGATGGAGGAGGGGACAGGTTGGTTATAGTATTATTATTGTGACATTGAGATAATGTAGCACTTGATCTGCAACTTAGTGTTGTATATAAATATGATGAAACAAATAAATGTTTCTCAAGGGAAGTGGAATGTTACCTGCCATTCATCCTTTTTTTTTGCACTTATTGAATAGAATAACAGAACTGGACGATTCTGAACCGAGTAGTAGACTCGATTAAGCTATGTAATATCACTTTTTTAGAAGAGTTTGAAGCCTT</genome_strand>
        <mrna_strand>GAGGGCATGGCACAGTGCTTACAAGGTAGGTTAGGGGATATAGGTTTGAGTCAAAAGTGTGTACTATGACGTATTCTTTCTCTCATGAGCTGGGGAACTTAGCCAGAGCAATTTTGGGGTTTGGTCATTACCATTTTATCAGTTTCCTTTACATTCGAGCGAGGATTTAATTGTTGCTTGATGGAGGAGGGGACAGGTTGGTTATAGTATTATTATTGTGACATTGAGATAATGTAGCACTTGATCTGCAACTTAGTGTTGTATATAAATATGATGAAACAAATAAATGTTTCTCAAGGGAAGTGGAATGTTACCTGCCATTCATCCTTTTTTTTTGCACTTATTGAATAGAATAACAGAACTGGACGATTCTGAACCGAGTAGTAGACTCGATTAAGCTATGTAATATCACTTTTTTAGAAGAGTTTGAAGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349494" ref_strand="+" ref_description="SGN-E349494 [cTOS-1-I7]">
      <seq>acagtgcttacaaggtaggttaggggatataggtttgagtcaaaagtgtgtactatgacgtattctttctctcatgagctggggaacttagccagagcaattttggggtttggtcattaccattttatcagtttcctttacattcgagcgaggatttaattgttgcttgatggaggaggggacaggttggttatagtattattattgtgacattgagataatgtagcacttgatctgcaacttagtgttgtatataaatatgatgaaacaaataaatgtttctcaagggaagtggaatgttacctgccattcatcctttaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="102213" stop="40860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101913" g_stop="101570" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E349494" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101913" e_stop="101570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTGCTTACAAGGTAGGTTAGGGGATATAGGTTTGAGTCAAAAGTGTGTACTATGACGTATTCTTTCTCTCATGAGCTGGGGAACTTAGCCAGAGCAATTTTGGGGTTTGGTCATTACCATTTTATCAGTTTCCTTTACATTCGAGCGAGGATTTAATTGTTGCTTGATGGAGGAGGGGACAGGTTGGTTATAGTATTATTATTGTGACATTGAGATAATGTAGCACTTGATCTGCAACTTAGTGTTGTATATAAATATGATGAAACAAATAAATGTTTCTCAAGGGAAGTGGAATGTTACCTGCCATTCATCCTTTTTTTTTGCACTTATTGAATAGAATA</genome_strand>
        <mrna_strand>ACAGTGCTTACAAGGTAGGTTAGGGGATATAGGTTTGAGTCAAAAGTGTGTACTATGACGTATTCTTTCTCTCATGAGCTGGGGAACTTAGCCAGAGCAATTTTGGGGTTTGGTCATTACCATTTTATCAGTTTCCTTTACATTCGAGCGAGGATTTAATTGTTGCTTGATGGAGGAGGGGACAGGTTGGTTATAGTATTATTATTGTGACATTGAGATAATGTAGCACTTGATCTGCAACTTAGTGTTGTATATAAATATGATGAAACAAATAAATGTTTCTCAAGGGAAGTGGAATGTTACCTGCCATTCATCCTTTAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352265" ref_strand="+" ref_description="SGN-E352265 [cTOS-13-J14]">
      <seq>acagtgcttacaaggtaggttaggggatataggtttgagtcaaaagtgtgtactatgacgtattctttctctcatgagctggggaacttagccagagcaattttggggtttggtcattaccattttatcagtttcctttacattcgagcgaggatttaattgttgcttgatggaggaggggacaggttggttatagtattattattgtgacattgagataatgtagcacttgatctgcaacttagtgttgtatataaatatgatgaaacaaataaatgtttctcaagggaagtggaatgttacctgccattcatcctttaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="102213" stop="40860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101913" g_stop="101570" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E352265" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101913" e_stop="101570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTGCTTACAAGGTAGGTTAGGGGATATAGGTTTGAGTCAAAAGTGTGTACTATGACGTATTCTTTCTCTCATGAGCTGGGGAACTTAGCCAGAGCAATTTTGGGGTTTGGTCATTACCATTTTATCAGTTTCCTTTACATTCGAGCGAGGATTTAATTGTTGCTTGATGGAGGAGGGGACAGGTTGGTTATAGTATTATTATTGTGACATTGAGATAATGTAGCACTTGATCTGCAACTTAGTGTTGTATATAAATATGATGAAACAAATAAATGTTTCTCAAGGGAAGTGGAATGTTACCTGCCATTCATCCTTTTTTTTTGCACTTATTGAATAGAATA</genome_strand>
        <mrna_strand>ACAGTGCTTACAAGGTAGGTTAGGGGATATAGGTTTGAGTCAAAAGTGTGTACTATGACGTATTCTTTCTCTCATGAGCTGGGGAACTTAGCCAGAGCAATTTTGGGGTTTGGTCATTACCATTTTATCAGTTTCCTTTACATTCGAGCGAGGATTTAATTGTTGCTTGATGGAGGAGGGGACAGGTTGGTTATAGTATTATTATTGTGACATTGAGATAATGTAGCACTTGATCTGCAACTTAGTGTTGTATATAAATATGATGAAACAAATAAATGTTTCTCAAGGGAAGTGGAATGTTACCTGCCATTCATCCTTTAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341303" ref_strand="+" ref_description="SGN-E341303 [cTOE-22-N1]">
      <seq>gtcaattgattgaagagtttgccaaggaggagcaaggggagtatgataaaggggccgcagcaggagcctcgaggtgagggcatggcacagtgcttacaaggtaggttaggggatataggtttgagtcaaaagtgtgtactatgacgtattctttctctcatgagctggggaacttagccagagcaattttggggtttggtcattaccattttatcagtttcctttacattcgagcgaggatttaattgttgcttgatggaggaggggacaggttggttatagtattattattgtgacattgagataatgtagcacttgatctgcaacttagtgttgtatataaatatgatgaaacaaataaatgtttctcaagggaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="102299" stop="40860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101999" g_stop="101606" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E341303" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101999" e_stop="101606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAATTGATTGAAGAGTTTGCCAAGGAGGAGCAAGGGGAGTATGATAAAGGGGCCGCAGCAGGAGCCTCGAGGTGAGGGCATGGCACAGTGCTTACAAGGTAGGTTAGGGGATATAGGTTTGAGTCAAAAGTGTGTACTATGACGTATTCTTTCTCTCATGAGCTGGGGAACTTAGCCAGAGCAATTTTGGGGTTTGGTCATTACCATTTTATCAGTTTCCTTTACATTCGAGCGAGGATTTAATTGTTGCTTGATGGAGGAGGGGACAGGTTGGTTATAGTATTATTATTGTGACATTGAGATAATGTAGCACTTGATCTGCAACTTAGTGTTGTATATAAATATGATGAAACAAATAAATGTTTCTCAAGGGAAGTGGAATGTTACCTGCC</genome_strand>
        <mrna_strand>GTCAATTGATTGAAGAGTTTGCCAAGGAGGAGCAAGGGGAGTATGATAAAGGGGCCGCAGCAGGAGCCTCGAGGTGAGGGCATGGCACAGTGCTTACAAGGTAGGTTAGGGGATATAGGTTTGAGTCAAAAGTGTGTACTATGACGTATTCTTTCTCTCATGAGCTGGGGAACTTAGCCAGAGCAATTTTGGGGTTTGGTCATTACCATTTTATCAGTTTCCTTTACATTCGAGCGAGGATTTAATTGTTGCTTGATGGAGGAGGGGACAGGTTGGTTATAGTATTATTATTGTGACATTGAGATAATGTAGCACTTGATCTGCAACTTAGTGTTGTATATAAATATGATGAAACAAATAAATGTTTCTCAAGGGAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372058" ref_strand="+" ref_description="SGN-E372058 [TUS-30-F24](-)">
      <seq>atgttcgtttttggaatgatttctgtgtttattggcatttatttgctagcaccagaagatgatgaagtattgaaggataattctttagcagtactcaaaacttcgaattcatcgcaggatgttgagagattgttcatatcatctgatcaaattagggatatcgagatcatttggacgagatatgctgatgaaaactgctgatatgattggactatgcgagcgccaggacgttggtgtgtggtgataaacatgaaaatggtacaagcagttatctgtctcgtcgaaaaattatatagtgtatataaaagcatttttgtgtgtatatacattggtaaattcatttgggcagtgaagcttctattgtaattggcaaaagtagcttgaacttttgtttttaggttgctaattaactcatgaagtactgctacatctttgcattttttcaatttcctctagtagtagtgcttaacaatattgttatttctttctccttatatatatggaaaaaaatatcaaacagttcagtctttactttcctgtttaatatttgttatttgtattaaaattcgataaaatctgatcaactatagtctagttttagttgataaagataaacattcatatttgatatctattttattcggaatcaagagtaaataaatactataaaaaaggtttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="113123" stop="111841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112823" g_stop="112133" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="691" r_length="691" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E372058" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112823" e_stop="112133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTCGTTTTTGGAATGATTTCTGTGTTTATTGGCATTTATTTGCTAGCACCAGAAGATGATGAAGTATTGAAGGATAATTCTTTAGCAGTACTCAAAACTTCGAATTCATCGCAGGATGTTGAGAGATTGTTCATATCATCTGATCAAATTAGGGATATCGAGATCATTTGGACGAGATATGCTGATGAAAACTGCTGATATGATTGGACTATGCGAGCGCCAGGACGTTGGTGTGTGGTGATAAACATGAAAATGGTACAAGCAGTTATCTGTCTCGTCGAAAAATTATATAGTGTATATAAAAGCATTTTTGTGTGTATATACATTGGTAAATTCATTTGGGCAGTGAAGCTTCTATTGTAATTGGCAAAAGTAGCTTGAACTTTTGTTTTTAGGTTGCTAATTAACTCATGAAGTACTGCTACATCTTTGCATTTTTTCAATTTCCTCTAGTAGTAGTGCTTAACAATATTGTTATTTCTTTCTCCTTATATATATGGAAAAAAATATCAAACAGTTCAGTCTTTACTTTCCTGTTTAATATTTGTTATTTGTATTAAAATTCGATAAAATCTGATCAACTATAGTCTAGTTTTAGTTGATAAAGATAAACATTCATATTTGATATCTATTTTATTCGGAATCAAGAGTAAATAAATACTATAAAAAAGGTTTCAAAATTCATACA</genome_strand>
        <mrna_strand>ATGTTCGTTTTTGGAATGATTTCTGTGTTTATTGGCATTTATTTGCTAGCACCAGAAGATGATGAAGTATTGAAGGATAATTCTTTAGCAGTACTCAAAACTTCGAATTCATCGCAGGATGTTGAGAGATTGTTCATATCATCTGATCAAATTAGGGATATCGAGATCATTTGGACGAGATATGCTGATGAAAACTGCTGATATGATTGGACTATGCGAGCGCCAGGACGTTGGTGTGTGGTGATAAACATGAAAATGGTACAAGCAGTTATCTGTCTCGTCGAAAAATTATATAGTGTATATAAAAGCATTTTTGTGTGTATATACATTGGTAAATTCATTTGGGCAGTGAAGCTTCTATTGTAATTGGCAAAAGTAGCTTGAACTTTTGTTTTTAGGTTGCTAATTAACTCATGAAGTACTGCTACATCTTTGCATTTTTTCAATTTCCTCTAGTAGTAGTGCTTAACAATATTGTTATTTCTTTCTCCTTATATATATGGAAAAAAATATCAAACAGTTCAGTCTTTACTTTCCTGTTTAATATTTGTTATTTGTATTAAAATTCGATAAAATCTGATCAACTATAGTCTAGTTTTAGTTGATAAAGATAAACATTCATATTTGATATCTATTTTATTCGGAATCAAGAGTAAATAAATACTATAAAAAAGGTTTCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397111" ref_strand="+" ref_description="SGN-E397111 [TUS-44-N2](-)">
      <seq>tttttttttttttttttttttttatggagaaagaaataacaatatggttaagcactactagtagaggaaattgaaaaaatgcaaagatgtagcagtacttcatgagttaattagcaacctaaaaacaaaagttcaagatacttttgccaattacaatagaagcttcactgcccaaacgaatttaccaatgtatatacacacaaaaatggttttatatacactatataatttttcgacgagacagataattgcttgtaccattttcatgtttatcaccacacaccaacgtcctggcgctggcatagtccaatcatctcagcagttttcatcagcatatctcgtccaaatgatctcgatatccttaatttgatcagatgatatgaacaatctctcaacatcctgcgatgaattagaagttttgagtactgctaaagaattatccttcaatacttcatcatcttcgtggtgctagcaaataaatgccaataaacacagaaatcattccaaaaacgaacatggtagttaataaagcatcaaacacaaagtatcctcaaggggggcccgtacccaatcgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="61131" stop="113147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112308" g_stop="112862" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E397111" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112308" e_stop="112862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATATTTTTTTCCATATATATAAGGAGAAAGAAATAACAATATTGTTAAGCACTACTACTAGAGGAAATTGAAAAAATGCAAAGATGTAGCAGTACTTCATGAGTTAATTAGCAACCTAAAAACAAAAGTTCAAGCTACTTTTGCCAATTACAATAGAAGCTTCACTGCCCAAATGAATTTACCAATGTATATACACACAAAAATGCTTTTATATACACTATATAATTTTTCGACGAGACAGATAACTGCTTGTACCATTTTCATGTTTATCACCACACACCAACGTCCTGGCGCTCGCATAGTCCAATCATATCAGCAGTTTTCATCAGCATATCTCGTCCAAATGATCTCGATATCCCTAATTTGATCAGATGATATGAACAATCTCTCAACATCCTGCGATGAATTCGAAGTTTTGAGTACTGCTAAAGAATTATCCTTCAATACTTCATCATCTTC-TGGTGCTAGCAAATAAATGCCAATAAACACAGAAATCATTCCAAAAACGAACATGGTTGTTCTTAAAGCATCAAACACCTTGTATTCCTCAAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTATGGAGAAAGAAATAACAATATGGTTAAGCACTACTAGTAGAGGAAATTGAAAAAATGCAAAGATGTAGCAGTACTTCATGAGTTAATTAGCAACCTAAAAACAAAAGTTCAAGATACTTTTGCCAATTACAATAGAAGCTTCACTGCCCAAACGAATTTACCAATGTATATACACACAAAAATGGTTTTATATACACTATATAATTTTTCGACGAGACAGATAATTGCTTGTACCATTTTCATGTTTATCACCACACACCAACGTCCTGGCGCTGGCATAGTCCAATCATCTCAGCAGTTTTCATCAGCATATCTCGTCCAAATGATCTCGATATCCTTAATTTGATCAGATGATATGAACAATCTCTCAACATCCTGCGATGAATTAGAAGTTTTGAGTACTGCTAAAGAATTATCCTTCAATACTTCATCATCTTCGTGGTGCTAGCAAATAAATGCCAATAAACACAGAAATCATTCCAAAAACGAACATGGTAGTTAATAAAGCATCAAACACAAAGTA-TCCTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395305" ref_strand="+" ref_description="SGN-E395305 [TUS-43-M1](-)">
      <seq>tttttttttttttttttttttttaaggagaaagaaataacaatattgttaagcactactactagaggaaattgaaaaaatgcaaagatgtagcagtacttcatgagttaattagcaacctaaaaacaaaagttcaagctacttttgccaattacaatagaagcttcactgcccaaatgaatttaccaatgtatatacacacaaaaatgcttttatatacactatataatttttcgacgagacagataactgcttgtaccattttcatgtttatcaccacacaccaacgtcctggcgctcgcatagtccaatcatatcagcagttttcatcagcatatctcgtccaaatgatctcgatatccctaatttgatcagatgatatgaacaatctctcaacatcctgcgatgaattcgaagttttgagtactgctaaagaattatccttcaatacttcatcatcttctggtgctagcaaataaatgccaataaacacagaaatcattccaaaaacgaacatggttgttcttaaagcatcaaacaccttgtatcctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="112024" stop="113161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112308" g_stop="112861" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E395305" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112308" e_stop="112861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATATTTTTTTCCATATATATAAGGAGAAAGAAATAACAATATTGTTAAGCACTACTACTAGAGGAAATTGAAAAAATGCAAAGATGTAGCAGTACTTCATGAGTTAATTAGCAACCTAAAAACAAAAGTTCAAGCTACTTTTGCCAATTACAATAGAAGCTTCACTGCCCAAATGAATTTACCAATGTATATACACACAAAAATGCTTTTATATACACTATATAATTTTTCGACGAGACAGATAACTGCTTGTACCATTTTCATGTTTATCACCACACACCAACGTCCTGGCGCTCGCATAGTCCAATCATATCAGCAGTTTTCATCAGCATATCTCGTCCAAATGATCTCGATATCCCTAATTTGATCAGATGATATGAACAATCTCTCAACATCCTGCGATGAATTCGAAGTTTTGAGTACTGCTAAAGAATTATCCTTCAATACTTCATCATCTTCTGGTGCTAGCAAATAAATGCCAATAAACACAGAAATCATTCCAAAAACGAACATGGTTGTTCTTAAAGCATCAAACACCTTGTATTCCTCAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTAAGGAGAAAGAAATAACAATATTGTTAAGCACTACTACTAGAGGAAATTGAAAAAATGCAAAGATGTAGCAGTACTTCATGAGTTAATTAGCAACCTAAAAACAAAAGTTCAAGCTACTTTTGCCAATTACAATAGAAGCTTCACTGCCCAAATGAATTTACCAATGTATATACACACAAAAATGCTTTTATATACACTATATAATTTTTCGACGAGACAGATAACTGCTTGTACCATTTTCATGTTTATCACCACACACCAACGTCCTGGCGCTCGCATAGTCCAATCATATCAGCAGTTTTCATCAGCATATCTCGTCCAAATGATCTCGATATCCCTAATTTGATCAGATGATATGAACAATCTCTCAACATCCTGCGATGAATTCGAAGTTTTGAGTACTGCTAAAGAATTATCCTTCAATACTTCATCATCTTCTGGTGCTAGCAAATAAATGCCAATAAACACAGAAATCATTCCAAAAACGAACATGGTTGTTCTTAAAGCATCAAACACCTTGTA-TCCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398676" ref_strand="+" ref_description="SGN-E398676 [TUS-44-N2]">
      <seq>tttttttttttttttttttttttaaggaaaaagaaataacaatattgttaagcactactactagaggaaattgaaaaaatgcaaagatgtagcagtacttcatgagttaattagcaacctaaaaacaaaagttcaagctacttttgccaattacaatagaagcttcactgcccaaatgaatttaccaatgtatatacacacaaaaatgcttttatatacactatataatttttcgacaaaacaaataactgcttgtaccattttcatgtttatcaccacacaccaacgtcctggcgctcgcatagtccaatcatatcagcagttttcatcagcatatctcgtccaaatgatctcgatatccctaatttgatcagatgatatgaacaatctctcaacatcctgcgatgaattcgaagttttgagtactgctaaagaattatccttcaatacttcatcatcttctggtgctagcaaataaatgccaataaacacagaaatcattccaaaaacgaacatggttgttcttaaagcatcaaacaccttgtattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="112024" stop="113156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112308" g_stop="112856" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E398676" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112308" e_stop="112856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATATTTTTTTCCATATATATAAGGAGAAAGAAATAACAATATTGTTAAGCACTACTACTAGAGGAAATTGAAAAAATGCAAAGATGTAGCAGTACTTCATGAGTTAATTAGCAACCTAAAAACAAAAGTTCAAGCTACTTTTGCCAATTACAATAGAAGCTTCACTGCCCAAATGAATTTACCAATGTATATACACACAAAAATGCTTTTATATACACTATATAATTTTTCGACGAGACAGATAACTGCTTGTACCATTTTCATGTTTATCACCACACACCAACGTCCTGGCGCTCGCATAGTCCAATCATATCAGCAGTTTTCATCAGCATATCTCGTCCAAATGATCTCGATATCCCTAATTTGATCAGATGATATGAACAATCTCTCAACATCCTGCGATGAATTCGAAGTTTTGAGTACTGCTAAAGAATTATCCTTCAATACTTCATCATCTTCTGGTGCTAGCAAATAAATGCCAATAAACACAGAAATCATTCCAAAAACGAACATGGTTGTTCTTAAAGCATCAAACACCTTGTATTC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTAAGGAAAAAGAAATAACAATATTGTTAAGCACTACTACTAGAGGAAATTGAAAAAATGCAAAGATGTAGCAGTACTTCATGAGTTAATTAGCAACCTAAAAACAAAAGTTCAAGCTACTTTTGCCAATTACAATAGAAGCTTCACTGCCCAAATGAATTTACCAATGTATATACACACAAAAATGCTTTTATATACACTATATAATTTTTCGACAAAACAAATAACTGCTTGTACCATTTTCATGTTTATCACCACACACCAACGTCCTGGCGCTCGCATAGTCCAATCATATCAGCAGTTTTCATCAGCATATCTCGTCCAAATGATCTCGATATCCCTAATTTGATCAGATGATATGAACAATCTCTCAACATCCTGCGATGAATTCGAAGTTTTGAGTACTGCTAAAGAATTATCCTTCAATACTTCATCATCTTCTGGTGCTAGCAAATAAATGCCAATAAACACAGAAATCATTCCAAAAACGAACATGGTTGTTCTTAAAGCATCAAACACCTTGTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398428" ref_strand="+" ref_description="SGN-E398428 [TUS-43-M1]">
      <seq>tttttttttttttttttttttttaaggagaaagaaataacaatattgttaagcactactactagaggaaattgaaaaaatgcaaagatgtagcagtacttcatgagttaattagcaacctaaaaacaaaagttcaagctacttttgccaattacaatagaagcttcactgcccaaatgaatttaccaatgtatatacacacaaaaatgcttttatatacactatataatttttcgacgagacagataactgcttgtaccattttcatgtttatcaccacacaccaacgtcctggcgctcgcatagtccaatcatatcagcagttttcatcagcatatctcgtccaaatgatctcgatatccctaatttgatcagatgatatgaacaatctctcaacatcctgcgatgaattcgaagttttgagtactgctaaagaattatccttcaatacttcatcatcttctggtgctagcaaataaatgccaataaacacagaaatcattccaaaaacgaacatggttgttcttaaagcatcaaacaccttgtattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="112024" stop="113156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112308" g_stop="112856" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E398428" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112308" e_stop="112856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATATTTTTTTCCATATATATAAGGAGAAAGAAATAACAATATTGTTAAGCACTACTACTAGAGGAAATTGAAAAAATGCAAAGATGTAGCAGTACTTCATGAGTTAATTAGCAACCTAAAAACAAAAGTTCAAGCTACTTTTGCCAATTACAATAGAAGCTTCACTGCCCAAATGAATTTACCAATGTATATACACACAAAAATGCTTTTATATACACTATATAATTTTTCGACGAGACAGATAACTGCTTGTACCATTTTCATGTTTATCACCACACACCAACGTCCTGGCGCTCGCATAGTCCAATCATATCAGCAGTTTTCATCAGCATATCTCGTCCAAATGATCTCGATATCCCTAATTTGATCAGATGATATGAACAATCTCTCAACATCCTGCGATGAATTCGAAGTTTTGAGTACTGCTAAAGAATTATCCTTCAATACTTCATCATCTTCTGGTGCTAGCAAATAAATGCCAATAAACACAGAAATCATTCCAAAAACGAACATGGTTGTTCTTAAAGCATCAAACACCTTGTATTC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTAAGGAGAAAGAAATAACAATATTGTTAAGCACTACTACTAGAGGAAATTGAAAAAATGCAAAGATGTAGCAGTACTTCATGAGTTAATTAGCAACCTAAAAACAAAAGTTCAAGCTACTTTTGCCAATTACAATAGAAGCTTCACTGCCCAAATGAATTTACCAATGTATATACACACAAAAATGCTTTTATATACACTATATAATTTTTCGACGAGACAGATAACTGCTTGTACCATTTTCATGTTTATCACCACACACCAACGTCCTGGCGCTCGCATAGTCCAATCATATCAGCAGTTTTCATCAGCATATCTCGTCCAAATGATCTCGATATCCCTAATTTGATCAGATGATATGAACAATCTCTCAACATCCTGCGATGAATTCGAAGTTTTGAGTACTGCTAAAGAATTATCCTTCAATACTTCATCATCTTCTGGTGCTAGCAAATAAATGCCAATAAACACAGAAATCATTCCAAAAACGAACATGGTTGTTCTTAAAGCATCAAACACCTTGTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372273" ref_strand="+" ref_description="SGN-E372273 [TUS-30-N3](-)">
      <seq>tttttttttttttttttttttttaaggagaaagaaataacaatattgttaagcactactactagaggaaattgaaaaaatgcaaagatgtagcagtacttcatgagttaattagcaacctaaaaacaaaagttcaagctacttttgccaattacaatagaagcttcactgcccaaatgaatttaccaatgtatatacacacaaaaatgcttttatatacactatataatttttcgacgagacagataactgcttgtaccattttcatgtttatcaccacacaccaacgtcctggcgctcgcatagtccaatcatatcagcagttttcatcagcatatctcgtccaaatgatctcgatatccctaatttgatcagatgatatgaacaatctctcaacatcctgcgatgaattcgaagttttgagtactgctaaagaattatccttcaatacttcatcatcttctggtgctagcaaataaatgccaataaacacagaaatcattccaaaaacgaacatggttgttcttaaagcatcaaacaccttgtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="112024" stop="113155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112308" g_stop="112855" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E372273" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112308" e_stop="112855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATATTTTTTTCCATATATATAAGGAGAAAGAAATAACAATATTGTTAAGCACTACTACTAGAGGAAATTGAAAAAATGCAAAGATGTAGCAGTACTTCATGAGTTAATTAGCAACCTAAAAACAAAAGTTCAAGCTACTTTTGCCAATTACAATAGAAGCTTCACTGCCCAAATGAATTTACCAATGTATATACACACAAAAATGCTTTTATATACACTATATAATTTTTCGACGAGACAGATAACTGCTTGTACCATTTTCATGTTTATCACCACACACCAACGTCCTGGCGCTCGCATAGTCCAATCATATCAGCAGTTTTCATCAGCATATCTCGTCCAAATGATCTCGATATCCCTAATTTGATCAGATGATATGAACAATCTCTCAACATCCTGCGATGAATTCGAAGTTTTGAGTACTGCTAAAGAATTATCCTTCAATACTTCATCATCTTCTGGTGCTAGCAAATAAATGCCAATAAACACAGAAATCATTCCAAAAACGAACATGGTTGTTCTTAAAGCATCAAACACCTTGTATT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTAAGGAGAAAGAAATAACAATATTGTTAAGCACTACTACTAGAGGAAATTGAAAAAATGCAAAGATGTAGCAGTACTTCATGAGTTAATTAGCAACCTAAAAACAAAAGTTCAAGCTACTTTTGCCAATTACAATAGAAGCTTCACTGCCCAAATGAATTTACCAATGTATATACACACAAAAATGCTTTTATATACACTATATAATTTTTCGACGAGACAGATAACTGCTTGTACCATTTTCATGTTTATCACCACACACCAACGTCCTGGCGCTCGCATAGTCCAATCATATCAGCAGTTTTCATCAGCATATCTCGTCCAAATGATCTCGATATCCCTAATTTGATCAGATGATATGAACAATCTCTCAACATCCTGCGATGAATTCGAAGTTTTGAGTACTGCTAAAGAATTATCCTTCAATACTTCATCATCTTCTGGTGCTAGCAAATAAATGCCAATAAACACAGAAATCATTCCAAAAACGAACATGGTTGTTCTTAAAGCATCAAACACCTTGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287215" ref_strand="+" ref_description="SGN-E287215 [cLES-6-J18]">
      <seq>ttttttttttttttttttttttaaggagaaagaaataacaatattgttaagcactactactagaggaaattgaaaaaatgcaaagatgtagcagtacttcatgagttaattagcaacctaaaaacaaaagttcaagctacttttgccaattacaatagaagcttcactgcccaaatgaatttaccaatgtatatacacacaaaaatgcttttatatacactatataatttttcgacgagacagataactgcttgtaccattttcatgtttatcaccacacaccaacgtcctggcgctcgcatagtccaatcatatcagcagttttcatcagcatatctcgtccaaatgatctcgatatccctaatttgatcagatgatatgaacaatctctcaacatcctgcgatgaattcgaagttttgagtactgctaaagaattatccttcaatacttcatcatcttctggtgctagcaaataaatgccaataaacacagaaatcattccaaaaacgaacatggttgttcttaaagcatcaaacaccttgtattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="112024" stop="113156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112309" g_stop="112856" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E287215" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112309" e_stop="112856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATTTTTTTCCATATATATAAGGAGAAAGAAATAACAATATTGTTAAGCACTACTACTAGAGGAAATTGAAAAAATGCAAAGATGTAGCAGTACTTCATGAGTTAATTAGCAACCTAAAAACAAAAGTTCAAGCTACTTTTGCCAATTACAATAGAAGCTTCACTGCCCAAATGAATTTACCAATGTATATACACACAAAAATGCTTTTATATACACTATATAATTTTTCGACGAGACAGATAACTGCTTGTACCATTTTCATGTTTATCACCACACACCAACGTCCTGGCGCTCGCATAGTCCAATCATATCAGCAGTTTTCATCAGCATATCTCGTCCAAATGATCTCGATATCCCTAATTTGATCAGATGATATGAACAATCTCTCAACATCCTGCGATGAATTCGAAGTTTTGAGTACTGCTAAAGAATTATCCTTCAATACTTCATCATCTTCTGGTGCTAGCAAATAAATGCCAATAAACACAGAAATCATTCCAAAAACGAACATGGTTGTTCTTAAAGCATCAAACACCTTGTATTC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTAAGGAGAAAGAAATAACAATATTGTTAAGCACTACTACTAGAGGAAATTGAAAAAATGCAAAGATGTAGCAGTACTTCATGAGTTAATTAGCAACCTAAAAACAAAAGTTCAAGCTACTTTTGCCAATTACAATAGAAGCTTCACTGCCCAAATGAATTTACCAATGTATATACACACAAAAATGCTTTTATATACACTATATAATTTTTCGACGAGACAGATAACTGCTTGTACCATTTTCATGTTTATCACCACACACCAACGTCCTGGCGCTCGCATAGTCCAATCATATCAGCAGTTTTCATCAGCATATCTCGTCCAAATGATCTCGATATCCCTAATTTGATCAGATGATATGAACAATCTCTCAACATCCTGCGATGAATTCGAAGTTTTGAGTACTGCTAAAGAATTATCCTTCAATACTTCATCATCTTCTGGTGCTAGCAAATAAATGCCAATAAACACAGAAATCATTCCAAAAACGAACATGGTTGTTCTTAAAGCATCAAACACCTTGTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372274" ref_strand="+" ref_description="SGN-E372274 [TUS-30-N3]">
      <seq>ttttttttttttttttttttttaaggagaaagaaataacaatattgttaagcactactactagaggaaattgaaaaaatgcaaagatgtagcagtacttcatgagttaattagcaacctaaaaacaaaagttcaagctacttttgccaattacaatagaagcttcactgcccaaatgaatttaccaatgtatatacacacaaaaatgcttttatatacactatataatttttcgacgagacagataactgcttgtaccattttcatgtttatcaccacacaccaacgtcctggcgctcgcatagtccaatcatatcagcagttttcatcagcatatctcgtccaaatgatctcgatatccctaatttgatcagatgatatgaacaatctctcaacatcctgcgatgaattcgaagttttgagtactgctaaagaattatccttcaatacttcatcatcttctggtgctagcaaataaatgccaataaacacagaaatcattccaaaaacgaacatggttgttcttaaagcatcaaacaccttgtattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="112024" stop="113156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112309" g_stop="112856" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E372274" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112309" e_stop="112856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATTTTTTTCCATATATATAAGGAGAAAGAAATAACAATATTGTTAAGCACTACTACTAGAGGAAATTGAAAAAATGCAAAGATGTAGCAGTACTTCATGAGTTAATTAGCAACCTAAAAACAAAAGTTCAAGCTACTTTTGCCAATTACAATAGAAGCTTCACTGCCCAAATGAATTTACCAATGTATATACACACAAAAATGCTTTTATATACACTATATAATTTTTCGACGAGACAGATAACTGCTTGTACCATTTTCATGTTTATCACCACACACCAACGTCCTGGCGCTCGCATAGTCCAATCATATCAGCAGTTTTCATCAGCATATCTCGTCCAAATGATCTCGATATCCCTAATTTGATCAGATGATATGAACAATCTCTCAACATCCTGCGATGAATTCGAAGTTTTGAGTACTGCTAAAGAATTATCCTTCAATACTTCATCATCTTCTGGTGCTAGCAAATAAATGCCAATAAACACAGAAATCATTCCAAAAACGAACATGGTTGTTCTTAAAGCATCAAACACCTTGTATTC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTAAGGAGAAAGAAATAACAATATTGTTAAGCACTACTACTAGAGGAAATTGAAAAAATGCAAAGATGTAGCAGTACTTCATGAGTTAATTAGCAACCTAAAAACAAAAGTTCAAGCTACTTTTGCCAATTACAATAGAAGCTTCACTGCCCAAATGAATTTACCAATGTATATACACACAAAAATGCTTTTATATACACTATATAATTTTTCGACGAGACAGATAACTGCTTGTACCATTTTCATGTTTATCACCACACACCAACGTCCTGGCGCTCGCATAGTCCAATCATATCAGCAGTTTTCATCAGCATATCTCGTCCAAATGATCTCGATATCCCTAATTTGATCAGATGATATGAACAATCTCTCAACATCCTGCGATGAATTCGAAGTTTTGAGTACTGCTAAAGAATTATCCTTCAATACTTCATCATCTTCTGGTGCTAGCAAATAAATGCCAATAAACACAGAAATCATTCCAAAAACGAACATGGTTGTTCTTAAAGCATCAAACACCTTGTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227115" ref_strand="+" ref_description="SGN-E227115 [cLED-1-F16](-)">
      <seq>tgtttcaaatcgcttggacgtttttctcaatctgtactggatttgtctactttgaggaatacaaggtgtttgatgctttaagaacaaccatgttcgtttttggaatgatttctgtgtttattggcatttatttgctagcaccagaagatgatgaagtattgaaggataattctttagcagtactcaaaacttcgaattcatcgcaggatgttgagagattgttcatatcatctgatcaaattagggatatcgagatcatttggacgagatatgctgatgaaaactgctgatatgattggactatgcgagcgccaggacgttggtgtgtggtgataaacatgaaaatggtacaagcagttatctgtctcgtcgaaaaattatatagtgtatataaaagcatttttgtgtgtatatacattggtaaattcatttgggcagtgaagcttctattgtaattggcaaaagtagcttgaacttttgtttttaggttgctaattaactcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="113212" stop="112106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112912" g_stop="112411" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="503" polyA_stop="519"/>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E227115" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112912" e_stop="112411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCAAATCGCTTGGACGTTTTTCTCAATCTGTACTGGATTTGTCTACTTTGAGGAATACAAGGTGTTTGATGCTTTAAGAACAACCATGTTCGTTTTTGGAATGATTTCTGTGTTTATTGGCATTTATTTGCTAGCACCAGAAGATGATGAAGTATTGAAGGATAATTCTTTAGCAGTACTCAAAACTTCGAATTCATCGCAGGATGTTGAGAGATTGTTCATATCATCTGATCAAATTAGGGATATCGAGATCATTTGGACGAGATATGCTGATGAAAACTGCTGATATGATTGGACTATGCGAGCGCCAGGACGTTGGTGTGTGGTGATAAACATGAAAATGGTACAAGCAGTTATCTGTCTCGTCGAAAAATTATATAGTGTATATAAAAGCATTTTTGTGTGTATATACATTGGTAAATTCATTTGGGCAGTGAAGCTTCTATTGTAATTGGCAAAAGTAGCTTGAACTTTTGTTTTTAGGTTGCTAATTAACTC</genome_strand>
        <mrna_strand>TGTTTCAAATCGCTTGGACGTTTTTCTCAATCTGTACTGGATTTGTCTACTTTGAGGAATACAAGGTGTTTGATGCTTTAAGAACAACCATGTTCGTTTTTGGAATGATTTCTGTGTTTATTGGCATTTATTTGCTAGCACCAGAAGATGATGAAGTATTGAAGGATAATTCTTTAGCAGTACTCAAAACTTCGAATTCATCGCAGGATGTTGAGAGATTGTTCATATCATCTGATCAAATTAGGGATATCGAGATCATTTGGACGAGATATGCTGATGAAAACTGCTGATATGATTGGACTATGCGAGCGCCAGGACGTTGGTGTGTGGTGATAAACATGAAAATGGTACAAGCAGTTATCTGTCTCGTCGAAAAATTATATAGTGTATATAAAAGCATTTTTGTGTGTATATACATTGGTAAATTCATTTGGGCAGTGAAGCTTCTATTGTAATTGGCAAAAGTAGCTTGAACTTTTGTTTTTAGGTTGCTAATTAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372059" ref_strand="+" ref_description="SGN-E372059 [TUS-30-F24]">
      <seq>ttaaatctgcagtccgaagaaatatcataaatagtgttttaaacaacgtgaaactatcttattcacagagaattcgattgaatcaagtttatcgtaatattatattgggcgatctgagtcttctagcatagtggcaaagatgttggctcaaaaattgttttaggtcacaggttttgtatttttttttttgaaaaaaatttccttgttaaaatttctgaatccgcgagtgcgtccatgggggattgggtgattggagcgttgatcaatttgttaggaagcattttcatcaacttcggaacaaatctacttaaattagctcatgatgagagaaatttaagggctaggatgaagcccattatatacttccaagcatggagaattggtattctcttcttcacaataggaaattgtctcaatttcatttcatttggttatgctgctcaatcacttctagcagctttgggatctattcagttcatttcaaacatcggattcgcgtacttggtgttgaacaaaacagtgaaaatcaaattactgttagccactgcttttgttgttgctggaaacattttccttgtagcttttggtaatcatcagtcccctgtttacacaacagagcaattgggtgaaaattacacaaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="114201" stop="112956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113901" g_stop="113256" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E372059" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113901" e_stop="113256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATCTGCAGTCCGAAGAAATATCATAAATAGTGTTTTAAACAACGTGAAACTATCTTATTCACAGAGAATTCGATTGAATCAAGTTTATCGTAATATTATATTGGGCGATCTGAGTCTTCTAGCATAGTGGCAACAGATGTTGGCTCAAAAATTGTTTTAGGTCACAGGTTTTGTATTTTTTTTTTTGAAAAAAATTTCCTTGTTAAAATTTCTGAATCCGCGAGTGCGTCCATGGGGGATTGGGTGATTGGAGCGTTGATCAATTTGTTAGGAAGCATTTTCATCAACTTCGGAACAAATCTACTTAAATTAGCTCATGATGAGAGAAATTTAAGGGCTAGGATGAAGCCCATTATATACTTCCAAGCATGGAGAATTGGTATTCTCTTCTTCACAATAGGAAATTGTCTCAATTTCATTTCATTTGGTTATGCTGCTCAATCACTTCTAGCAGCTTTGGGATCTATTCAGTTCATTTCAAACATCGGATTCGCGTACTTGGTGTTGAACAAAACAGTGAAAATCAAATTACTGTTAGCCACTGCTTTTGTTGTTGCTGGAAACATTTTCCTTGTAGCTTTTGGTAATCATCAGTCCCCTGTTTACACAACAGAGCAATTGGGTGAAAATTACACAAACATT</genome_strand>
        <mrna_strand>TTAAATCTGCAGTCCGAAGAAATATCATAAATAGTGTTTTAAACAACGTGAAACTATCTTATTCACAGAGAATTCGATTGAATCAAGTTTATCGTAATATTATATTGGGCGATCTGAGTCTTCTAGCATAGTGGCAA-AGATGTTGGCTCAAAAATTGTTTTAGGTCACAGGTTTTGTATTTTTTTTTTTGAAAAAAATTTCCTTGTTAAAATTTCTGAATCCGCGAGTGCGTCCATGGGGGATTGGGTGATTGGAGCGTTGATCAATTTGTTAGGAAGCATTTTCATCAACTTCGGAACAAATCTACTTAAATTAGCTCATGATGAGAGAAATTTAAGGGCTAGGATGAAGCCCATTATATACTTCCAAGCATGGAGAATTGGTATTCTCTTCTTCACAATAGGAAATTGTCTCAATTTCATTTCATTTGGTTATGCTGCTCAATCACTTCTAGCAGCTTTGGGATCTATTCAGTTCATTTCAAACATCGGATTCGCGTACTTGGTGTTGAACAAAACAGTGAAAATCAAATTACTGTTAGCCACTGCTTTTGTTGTTGCTGGAAACATTTTCCTTGTAGCTTTTGGTAATCATCAGTCCCCTGTTTACACAACAGAGCAATTGGGTGAAAATTACACAAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283232" ref_strand="+" ref_description="SGN-E283232 [cLER-17-L2]">
      <seq>ttaaatctgcagtccgaagaaatatcataaatagtgttttaaacaacgtgaaactatcttattcacagagaattcgattgaatcaagtttatcgtaatattatattgggcgatctgagtcttctagcatagtggcaaagatgttggctcaaaaattgttttaggtcacaggttttgtatttttttttttgaaaaaaatttccttgttaaaatttctgaatccgcgagtgcgtccatgggggattgggtgattggagcgttgatcaatttgttaggaagcattttcatcaacttctgaacaaatctacttaaattagctcatgatgagagaaatttaagggctaggatgaagcccattatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="114201" stop="113239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113901" g_stop="113539" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E283232" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113901" e_stop="113539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATCTGCAGTCCGAAGAAATATCATAAATAGTGTTTTAAACAACGTGAAACTATCTTATTCACAGAGAATTCGATTGAATCAAGTTTATCGTAATATTATATTGGGCGATCTGAGTCTTCTAGCATAGTGGCAACAGATGTTGGCTCAAAAATTGTTTTAGGTCACAGGTTTTGTATTTTTTTTTTTGAAAAAAATTTCCTTGTTAAAATTTCTGAATCCGCGAGTGCGTCCATGGGGGATTGGGTGATTGGAGCGTTGATCAATTTGTTAGGAAGCATTTTCATCAACTTCGGAACAAATCTACTTAAATTAGCTCATGATGAGAGAAATTTAAGGGCTAGGATGAAGCCCATTATATA</genome_strand>
        <mrna_strand>TTAAATCTGCAGTCCGAAGAAATATCATAAATAGTGTTTTAAACAACGTGAAACTATCTTATTCACAGAGAATTCGATTGAATCAAGTTTATCGTAATATTATATTGGGCGATCTGAGTCTTCTAGCATAGTGGCAA-AGATGTTGGCTCAAAAATTGTTTTAGGTCACAGGTTTTGTATTTTTTTTTTTGAAAAAAATTTCCTTGTTAAAATTTCTGAATCCGCGAGTGCGTCCATGGGGGATTGGGTGATTGGAGCGTTGATCAATTTGTTAGGAAGCATTTTCATCAACTTCTGAACAAATCTACTTAAATTAGCTCATGATGAGAGAAATTTAAGGGCTAGGATGAAGCCCATTATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335580" ref_strand="+" ref_description="SGN-E335580 [cTOE-2-L14]">
      <seq>ttgcttgagacttgagtcttgagatatcttgagaagagttatttgttggtggcgaaaaacaagaacaaaaagggagggagatatgaagttaatagtagaagtaatagatgcttatgatcttatgccaaaagatggtgaaggatcagtaagtgcatttgtagaagttgattttgaaaaccaacttagcaaaactagaactgtcccaaaaaatctcaaccccacttggaaccataaactcattttccatcttgacgatataaagaatcatcgatacaaatacattgatgtttctgtgtatcatgagagaaggcctattccagggagaaactttcttggaagggtgagaattccttgctcaaatatagtcaagaaaggggaagaagtctatcaaagattccaacttgaaaagaaatggttttcctcatttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="118254" stop="119283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118554" g_stop="118983" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E335580" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118554" e_stop="118983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTTGAGACTTGAGTCTTGAGATATCTTGAGAAGAGTTATTTGTTGGTGGCGAAAAACAAGAACAAAAAGGGAGGGAGATATGAAGTTAATAGTAGAAGTAATAGATGCTTATGATCTTATGCCAAAAGATGGTGAAGGATCAGTAAGTGCATTTGTAGAAGTTGATTTTGAAAACCAACTTAGCAAAACTAGAACTGTCCCAAAAAATCTCAACCCCACTTGGAACCATAAACTCATTTTCCATCTTGACGATATAAAGAATCATCGATACAAATACATTGATGTTTCTGTGTATCATGAGAGAAGGCCTATTCCAGGGAGAAACTTTCTTGGAAGGGTGAGAATTCCTTGCTCAAATATAGTCAAGAAAGGGGAAGAAGTTTATCAAAGATTCCAACTTGAAAAGAAATGGTTTTCCTCATTTGTT</genome_strand>
        <mrna_strand>TTGCTTGAGACTTGAGTCTTGAGATATCTTGAGAAGAGTTATTTGTTGGTGGCGAAAAACAAGAACAAAAAGGGAGGGAGATATGAAGTTAATAGTAGAAGTAATAGATGCTTATGATCTTATGCCAAAAGATGGTGAAGGATCAGTAAGTGCATTTGTAGAAGTTGATTTTGAAAACCAACTTAGCAAAACTAGAACTGTCCCAAAAAATCTCAACCCCACTTGGAACCATAAACTCATTTTCCATCTTGACGATATAAAGAATCATCGATACAAATACATTGATGTTTCTGTGTATCATGAGAGAAGGCCTATTCCAGGGAGAAACTTTCTTGGAAGGGTGAGAATTCCTTGCTCAAATATAGTCAAGAAAGGGGAAGAAGTCTATCAAAGATTCCAACTTGAAAAGAAATGGTTTTCCTCATTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E428699" ref_strand="+" ref_description="SGN-E428699 [STM-50-D24]">
      <seq>ctaccatatagcccccacaatgtacaaaaagctataacaaagaaagcaaaaaacacagttctatattttagtttacacttcacatggccatcatcataagggaaggtgttgcaccctcttgagccagacagcaaacctttaaaactcgggattcttactgatgagatatctctatattttgacccctcctgcattattagatgaaaagcagcgggtcttgtttgcagcacactttctttcttggtagcccactaggaaactgggcttccgatgtctaaaccaaatcactgttgccagaatcccgttatctgatgctgcaaacccctttttggacatattgcacattgagaaagtacaggtacagatgaaatggtaatcaagctccctgcttgcttctaggcattagaatattccaactgccagaaatgtgtatcaagctccagcctcattacttagtttgagggtcatcttgatgttcatggctgccagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="+" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="121901" stop="122981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122190" g_stop="122681" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="+" ref_id="SGN-E428699" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E428699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122190" e_stop="122681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCATATA-TCCCCACAATGTACAAAAAGCTATAACAAATAAAGTATAAAACACTGTT-TATATTTTAGTCTACACTTCACAGGGCCATCATCGCAAGGGAAAGTGCTGCTGCACCTCTTGAGCCAGACAGCAAACCTGTACAACGCGGGTTTCTTACTGATGAGACAACTCTATATTTTGATCCCTCCTGCATTATGAGATGAAAAGCAGCAGGTCTTGTTTGCAGCACACTCTCTTTCTCAGTAGCCCACTAGGAAACTGGCCTTCAAATTATAAAACCAAATCACTGTTGCCAGAATCCAGTTATCTGATGCTGCAAACACCTTTTTGGACATGTTGCACATTGAGAAACTACAGGTACAGATGAAATGGTAATCAAGCTCCCAGCTTGCATCTAGACATTAGAATATTCCAACCGCCAGAAATGTGTATCAAGCTCCAGCCTCATTACTTAGTTTGAGGGTCATCTTGATGTTCATGGCTGCCAGTTC</genome_strand>
        <mrna_strand>CTACCATATAGCCCCCACAATGTACAAAAAGCTATAACAAAGAAAGCAAAAAACACAGTTCTATATTTTAGTTTACACTTCACATGGCCATCATCATAAGGGAAGGTGTTGC-AC-CCTCTTGAGCCAGACAGCAAACCTTTAAAACTCGGGATTCTTACTGATGAGATATCTCTATATTTTGACCCCTCCTGCATTATTAGATGAAAAGCAGCGGGTCTTGTTTGCAGCACACTTTCTTTCTTGGTAGCCCACTAGGAAACTGGGCTTCCGATGTCTAAACCAAATCACTGTTGCCAGAATCCCGTTATCTGATGCTGCAAACCCCTTTTTGGACATATTGCACATTGAGAAAGTACAGGTACAGATGAAATGGTAATCAAGCTCCCTGCTTGCTTCTAGGCATTAGAATATTCCAACTGCCAGAAATGTGTATCAAGCTCCAGCCTCATTACTTAGTTTGAGGGTCATCTTGATGTTCATGGCTGCCAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697963" ref_strand="+" ref_description="SGN-E697963 [FA04DD02]">
      <seq>cttaactgacttgtcgaatatttattggacctgtttattatcagcgtctgcgacacatggtttctgataaatttcaggtccgttctactggacaggtagaccatatcactcggcagcctatcaaggggagaaagcgtggtggaggtgtccgctttggtgaaatggaacgagattcactccttgctcatggagcatcatatttgctgcatgatagactccatacaagctcagatcatcacattgcagatgtgtgctctgaatgtggaagtgtcctaacatcatctgttattcagccgccaaaacgagcagtgcaagcaattctgaaacagctacctgctagagaacccaaaaaggttacttgtgtcgcttgtcgttcaagtaaaggaatggagactgttgctatgccttatgtgtttaaatatttagcggctgaactggcagccatgaacatcaagatgaccctcaaactaagtaatgaggctggagcttgatacacatttctggcggttggaatattctaatgtctagatgcaagctgggagcttgattaccatttcatctgtacctgtagcttctcaatgtgcaacatgtccaaaaaggtgtttgcagcatcagataactggattctggcaacagtgatttggctttataatttgaaggccagtttcctagggggctactgagaaacagagtgtgcctgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="123901" stop="122110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123604" g_stop="123528" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123527" i_stop="123036" i_length="492">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123035" g_stop="122410" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="704" r_length="627" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E697963" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123604" e_stop="123528"/>
          <exon e_start="123035" e_stop="122410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAACTGACTTGTCGAATATTTATTGGACCTGTTTATTATCAGCGTCTGCGACACATGGTTTCTGATAAATTTCAGGTTAGTATCACCTAGATATTAGAGTGAATGATCCTGTCTATTCTTCCTGCCCGCTTTGACCATTTAAGCTGATTTATGTTTTCATCTCGTGTAGCAAACATCGACTGTTTGATGAATAACTGTTTACATAACCACCTCCTGTGCTCAACTCTGATGTGAACTGTTAAGTTTTAAAAATTGGAAGCTAAAACTAGAAAAGAACACAATGTTTGTGCTTATCATTGACTTCCAAATGAAACCAAGATCAAGAAATTCTTCCTCTACCTAGTTTTCCTTCCTGCTTGAATAATTAATTTATTACAGTATTTATCCTATGCATTTTGGGCTGACAGATTTCATGTTAATGGGTCTCTTTTTTCCCATTTAACCCCACCCACCCCCAAAAAGGAAACAGATTCAGTTCGATAATTGAACTTCCAAGTATTACTTTATATATCCTTATTCCTTGTCAGGTTAAATTCGGTACTTAAGTTGGCTTCTATTGCTGTACAGGTCCGTTCTACTGGACAGGTAGACCATATCACTCGGCAGCCTATCAAGGGGAGAAAGCGTGGTGGAGGTGTCCGCTTTGGTGAAATGGAACGAGATTCACTCCTTGCTCATGGAGCATCATATTTGCTGCATGATAGACTCCATACAAGCTCAGATCATCACATTGCAGATGTGTGCTCTGAATGTGGAAGTGTCCTAACATCATCTGTTATTCAGCCGCCAAAACGAGCAGTGCAAGCAATTCTGAAACAGCTACCTGCTAGAGAACCCAAAAAGGTTACTTGTGTCGCTTGTCGTTCAAGTAAAGGAATGGAGACTGTTGCTATGCCTTATGTGTTTAAATATTTAGCGGCTGAACTGGCAGCCATGAACATCAAGATGACCCTCAAACTAAGTAATGAGGCTGGAGCTTGATACACATTTCTGGCGGTTGGAATATTCTAATGTCTAGATGCAAGCTGGGAGCTTGATTACCATTTCATCTGTACCTGTAGTTTCTCAATGTGCAACATGTCCAAAAAGGTGTTTGCAGCATCAGATAACTGGATTCTGGCAACAGTGATTTGGTTTTATAATTTGAAGGCCAGTTTCCTAGTGGGCTACTGAGAAAGAGAGTGTG-CTGCAAA</genome_strand>
        <mrna_strand>CTTAACTGACTTGTCGAATATTTATTGGACCTGTTTATTATCAGCGTCTGCGACACATGGTTTCTGATAAATTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTTCTACTGGACAGGTAGACCATATCACTCGGCAGCCTATCAAGGGGAGAAAGCGTGGTGGAGGTGTCCGCTTTGGTGAAATGGAACGAGATTCACTCCTTGCTCATGGAGCATCATATTTGCTGCATGATAGACTCCATACAAGCTCAGATCATCACATTGCAGATGTGTGCTCTGAATGTGGAAGTGTCCTAACATCATCTGTTATTCAGCCGCCAAAACGAGCAGTGCAAGCAATTCTGAAACAGCTACCTGCTAGAGAACCCAAAAAGGTTACTTGTGTCGCTTGTCGTTCAAGTAAAGGAATGGAGACTGTTGCTATGCCTTATGTGTTTAAATATTTAGCGGCTGAACTGGCAGCCATGAACATCAAGATGACCCTCAAACTAAGTAATGAGGCTGGAGCTTGATACACATTTCTGGCGGTTGGAATATTCTAATGTCTAGATGCAAGCTGGGAGCTTGATTACCATTTCATCTGTACCTGTAGCTTCTCAATGTGCAACATGTCCAAAAAGGTGTTTGCAGCATCAGATAACTGGATTCTGGCAACAGTGATTTGGCTTTATAATTTGAAGGCCAGTTTCCTAGGGGGCTACTGAGAAACAGAGTGTGCCTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602499" ref_strand="+" ref_description="SGN-E602499 [55564]">
      <seq>atgtggaagtgtcctaacatcatctgttattcagccgccaaaacgagcagtgcaagtgattttgaaacagctacctgctagagaacccaaaaaggttacttgtgttgcttgtcgttcaagtaaaggaatggagactgttgcaatgccttacgtgtttaaatatttagcggctgaactggcagccatgaacatcaagatgaccctcaaactaagtaatgaggctggagcttgatacacatttctggcagttggaatattctaatgcctagaagcaagcagggagcttgattaccatttcatctgtacctgtactttctcaatgtgcaatatgtccaaaaaggggtttgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="123153" stop="122203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122853" g_stop="122503" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E602499" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E602499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122853" e_stop="122503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGGAAGTGTCCTAACATCATCTGTTATTCAGCCGCCAAAACGAGCAGTGCAAGCAATTCTGAAACAGCTACCTGCTAGAGAACCCAAAAAGGTTACTTGTGTCGCTTGTCGTTCAAGTAAAGGAATGGAGACTGTTGCTATGCCTTATGTGTTTAAATATTTAGCGGCTGAACTGGCAGCCATGAACATCAAGATGACCCTCAAACTAAGTAATGAGGCTGGAGCTTGATACACATTTCTGGCGGTTGGAATATTCTAATGTCTAGATGCAAGCTGGGAGCTTGATTACCATTTCATCTGTACCTGTAGTTTCTCAATGTGCAACATGTCCAAAAAGGTGTTTGCAGC</genome_strand>
        <mrna_strand>ATGTGGAAGTGTCCTAACATCATCTGTTATTCAGCCGCCAAAACGAGCAGTGCAAGTGATTTTGAAACAGCTACCTGCTAGAGAACCCAAAAAGGTTACTTGTGTTGCTTGTCGTTCAAGTAAAGGAATGGAGACTGTTGCAATGCCTTACGTGTTTAAATATTTAGCGGCTGAACTGGCAGCCATGAACATCAAGATGACCCTCAAACTAAGTAATGAGGCTGGAGCTTGATACACATTTCTGGCAGTTGGAATATTCTAATGCCTAGAAGCAAGCAGGGAGCTTGATTACCATTTCATCTGTACCTGTACTTTCTCAATGTGCAATATGTCCAAAAAGGGGTTTGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439501" ref_strand="+" ref_description="SGN-E439501 [cSTA-12-K8]">
      <seq>cagtcagacaactagtatgaagttaaagggttcggagcctgttgttgttgattatgttgctgttgatgtgaaaaataaaacacatctgcagaaggcgaatatacgttttaggcgctccaggaatcctgtaattggtgataaatttagcagccgacatgggcaaaagggtgtttgctctcaattatggcctgatgttgatatgcccttctcagcagttacaggaatgaggccagatcttattattaatcctcatgctttcccttcaaggatgacgattgctatgctgttggagtcaattgctgctaagggaggtgctttacatgggaagtttgttgatgcaacgccgttctctaacacaatgaaggaatcagaatcggaatccagttcactggtggatgaccttggttccatgttagcggtttgtggcttcaatcaccatggtacggaagtactatatagtggagtatatgggacagaactgacttgtctaatatttattggacctgtttattatcagcgtctgcgacacatggtttctgataaatttcaggtccgttctactggacaggtagaccatatcactcggcagcctatcaaagggagaaagcgtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="125156" stop="122673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124856" g_stop="124763" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124762" i_stop="124219" i_length="544">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124218" g_stop="124006" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="307" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124005" i_stop="123771" i_length="235">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123770" g_stop="123528" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="550" r_length="243" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123527" i_stop="123036" i_length="492">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123035" g_stop="122973" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="613" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E439501" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124856" e_stop="124763"/>
          <exon e_start="124218" e_stop="124006"/>
          <exon e_start="123770" e_stop="123528"/>
          <exon e_start="123035" e_stop="122973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCAGACAACTTGTATGAAGTTGAAGGGTTCGGAGCCTGTTGTTGTTGATTATGTTGCTGTCGATGTGAAAAATAAAGCACATCTGCAGAAGGTGAGCAATTCCTCGATATATTTGACTATTAAAAGATACATCTCTGTTCTTTTACTGGGTTTCTAATTCACTTTGCTGTTGTTATCCTCTTTGTTGAGGATATATTAGTTGGTGTAGTTCTTTCATCTTTTGCTTTCTATTTCTCTTGAACTCAATGTCAACTTTTATTTAGCATAGATGACTGAGTATCATTGCCTGACTTCGTATCATTGCCTGGTCAATATATCTCTTTATTTCATTGAATCAAGGTAAGTTGATGTTTTCTTGGGTATTCATGTTCTTCAGGGGGTTTTGGTACTATTTACTGTCTTTTCTGTCTTCTAAAGTATTGGATGCTTCCTTTGATGCTGCACTTGTAGATTTATTGTGCTTATCAAATGTTGCAACTATCGTTACTTATCATTTTATTTTTTTTTGTCGTTGTAATAACAAAAATTTTGGTAGTTCGTGATGGAAAATCCTCTCTTAGCTACAAATTTACTCTGGTGTTCATGACCTTGAAAAACTTCAAATTTATCAACTTATTTGCATTTGTTTTGGGCAGGCGAATATACGTTTTAGGCGCTCCAGGAATCCTGTAATTGGTGATAAATTTAGCAGCCGACATGGGCAAAAGGGTGTTTGCTCTCAATTATGGCCTGATGTTGATATGCCCTTCTCAGCAGTTACAGGCATGAGGCCAGATCTTATTATTAATCCTCATGCTTTCCCTTCAAGGATGACAATTGCTATGCTGTTGGAGTCGATTGCTGCTAAGGTCTGTTTTCTCTTCTGCCGCGTATGGTGTTATTTATTTTAAGCAAAAGTATTTTGGTTAAGAGATTGTAGCTCTCCAGACAATAATATATTCAAGTAGTTTTTGTGGTAGTTTATATTTGTTTATTGGGTGATGGCTTCATATGCTGAAGATATCTCTCGCTTATGGAATCTATGGTTCATCTAGCTTGACATGGATGATCACAAGAATTTATATATATGCTATCTTCGAGCAGGGGGGTGCTTTACATGGGAAGTTTGTTGATGCAACGCCGTTCTCTAACACAATGAAGGAATCAGAATCGGAATCCAGTTCACTTGTGGATGACCTTGGTTCCATGTTAGCGGTTTGTGGCTTCAATCACCATGGTACGGAAGTACTATATAGTGGAGTATATGGGACAGAACTGACTTGTCGAATATTTATTGGACCTGTTTATTATCAGCGTCTGCGACACATGGTTTCTGATAAATTTCAGGTTAGTATCACCTAGATATTAGAGTGAATGATCCTGTCTATTCTTCCTGCCCGCTTTGACCATTTAAGCTGATTTATGTTTTCATCTCGTGTAGCAAACATCGACTGTTTGATGAATAACTGTTTACATAACCACCTCCTGTGCTCAACTCTGATGTGAACTGTTAAGTTTTAAAAATTGGAAGCTAAAACTAGAAAAGAACACAATGTTTGTGCTTATCATTGACTTCCAAATGAAACCAAGATCAAGAAATTCTTCCTCTACCTAGTTTTCCTTCCTGCTTGAATAATTAATTTATTACAGTATTTATCCTATGCATTTTGGGCTGACAGATTTCATGTTAATGGGTCTCTTTTTTCCCATTTAACCCCACCCACCCCCAAAAAGGAAACAGATTCAGTTCGATAATTGAACTTCCAAGTATTACTTTATATATCCTTATTCCTTGTCAGGTTAAATTCGGTACTTAAGTTGGCTTCTATTGCTGTACAGGTCCGTTCTACTGGACAGGTAGACCATATCACTCGGCAGCCTATCAAGGGGAGAAAGCGTGGT</genome_strand>
        <mrna_strand>CAGTCAGACAACTAGTATGAAGTTAAAGGGTTCGGAGCCTGTTGTTGTTGATTATGTTGCTGTTGATGTGAAAAATAAAACACATCTGCAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAATATACGTTTTAGGCGCTCCAGGAATCCTGTAATTGGTGATAAATTTAGCAGCCGACATGGGCAAAAGGGTGTTTGCTCTCAATTATGGCCTGATGTTGATATGCCCTTCTCAGCAGTTACAGGAATGAGGCCAGATCTTATTATTAATCCTCATGCTTTCCCTTCAAGGATGACGATTGCTATGCTGTTGGAGTCAATTGCTGCTAAG...........................................................................................................................................................................................................................................GGAGGTGCTTTACATGGGAAGTTTGTTGATGCAACGCCGTTCTCTAACACAATGAAGGAATCAGAATCGGAATCCAGTTCACTGGTGGATGACCTTGGTTCCATGTTAGCGGTTTGTGGCTTCAATCACCATGGTACGGAAGTACTATATAGTGGAGTATATGGGACAGAACTGACTTGTCTAATATTTATTGGACCTGTTTATTATCAGCGTCTGCGACACATGGTTTCTGATAAATTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTTCTACTGGACAGGTAGACCATATCACTCGGCAGCCTATCAAAGGGAGAAAGCGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300223" ref_strand="+" ref_description="SGN-E300223 [cLEW-17-K10]">
      <seq>cgagatatacgtcaatttaacatgttgctacaatgaggaatgtgaccgtgtaaagggatctgtcggcacccagcttgttggtgaaagagcaaaaattatcctggatgaagttcaggccctatctctttttacccgagcacagtgcctgcgacatattggggagcatttccaacctgttgtgatcggaatgcaaaatgatagttacaggcatgaggccagatcttattattaatcctcatgctttcccttcaaggatgacaattgctatgctgttggagtcgattgctgctaaggggggtgctttacatgggaagtttgttgatgcaacgccgttctctaacacaatgaaggaatcagaatcggaatccagttcacttgtggatgaccttggttccatgttagcggtttgtggcttcaatcaccatggtacggaagtactatatagtggagtatatgggacagaactgacttgtcgaatatttattggacctgtttattatcagcgtctgcgacacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="134950" stop="123247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134650" g_stop="134493" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134492" i_stop="134409" i_length="84">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134408" g_stop="134367" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="200" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134366" i_stop="130265" i_length="4102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130264" g_stop="130258" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="207" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="130257" i_stop="124092" i_length="6166">
            <donor d_prob="0.771" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124091" g_stop="124006" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="293" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124005" i_stop="123771" i_length="235">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123770" g_stop="123547" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="517" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E300223" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134650" e_stop="134493"/>
          <exon e_start="134408" e_stop="134367"/>
          <exon e_start="130264" e_stop="130258"/>
          <exon e_start="124091" e_stop="124006"/>
          <exon e_start="123770" e_stop="123547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGATATACGTCAATTTAACATGTTGCTACAATGAGGAATGTGACCGTGTAAAGGGATCTGTCGGCACCCAGCTTGTTGGTGAAAGAGCAAAAATTATCCTGGATGAAGTTCAGGCCCTATCTCTTTTTACCCGAGCACAGTGCCTGCGACATATTGGTACTTGTTTTATTTACTATCATGGTTAACTGTGATCTTATCAAATGACTGTCAACTGCATATGATCAATCTTCCACTTTTCAGGGGAGCATTTCCAACCTGTTGTGATCGGAATGCAAAATGATAGTTACAAAACTGTAAGTGTTATCTTGGTTGTACTTGTCATGATTTAGTTCTAGAAGTCAGAACAGACATATTTTTCTAGAGATGATACCTTTACATCACATTCTCTCTCTCACTTGACAGGTTGCTGATGCTGTGCTTAGAGACTACATATTTGTCCATCTGGATAACAATCATGATAAATTTAATCTACTTATGTTAGTATTTTTTTCTCTGGAAAATTGTCTTGTGATTTTATGGTAACTCTTCCATCTACAGTTGTATGTTTTGGCTATTGATATATTGATACTCCTGCTTTATTTAGCTTTATGTTGCAGAAGCTTTTCTCTCTGATAGATCAGACATCTGTCCTAGACAATCCAGACTCTCTGCAAAATCAAGAAGTTTTGCTGCCGGGTCACTTAATTACCATATATCTGAAGGTCCAAACTTTTAAATTTCCTTTTTAAGGAATAATTGTTATGTGACATTGGATGTGATGCTTATATAGTAAGTGCCTCATAGAAATGTGTATTGTCATTCTTCTTTGGGCTAAAAGAACCTTATATCCAGGATCAATTAAGTGGAGAGTTAAGTGATTACTCAATCAATCAAATACACCTAGTTGGCTATTGCTTTATGAATCATCTGTATCAATCATGCTCTATTCAAGCCCATCACAGTCCAGTATTGAGTACGTTTTTTATGTGGAGTGTTAGGCATGCTCTAAGTGCTTTAGTTGTCTGTGACTTCTTATGGTTGCAGTACATGATATGAATGTATGAATGTTTTCTTTTGGTTTCACAAGGCAAAAAAGAACGGATGATGTTTTTAAGGACAATTGGCCACTCTCGACTGTATTGGGTCCTGTAGTAATCATTTGCACTTCGGTGTTACTTGGGAATATCAAAGAAATGGATGGGTACTTCTAACTTTTGAGCTCCTTGGAGCTATACAGTTAGACGTCACTTCCTTATTAAGTCTTACCTGATTAACAAAGTACTTTAAGGATCTTCTATTGCATTATTAATTAGCAAGAGACTTATTGGGAATATTCTATTCCTGTTTGGCTCATATTGGGTCATGCCTCTACTTACAAGACTGCATTACATCATGGTCTAGTTTGAAGATGGGAAAGAAGATACCGAATTCTGTTCACGAGTCCCAAATTTAATGCTTCTTGTATCTTATTTATAAAGAAGGGGATCTGAAAATTGGTACAGTTCATGAACTTCTTAAATTTCCACTTGATTTGTTTTTTGATCCTTTCACACTTTCTACGTTGATTTTTACTTTGCTTCTTCTTCCATTCCACTTTCTTGGTGCTTTTATTCCCACTATTCATTCGCTTTTAGCAGAAAAACATGAGGATTGATTGTTTCATTCGCTGGACATTCATGAAATCAGTTGCAGAAGCTTATGACTTGAAATGTCTTAACTTGTTCAAGTTCTTTTTACTTTTATATGCTCAAAAAGTAATATTATTTAATTATGAATATGATAATCTGATTGTGTATGTTAAATATATCTATAAAATAGTTTAATATAGTTGTCACCTTAATCTTTCAATATGTTGTTTTTTGAATTTGAGTTGTGATATATACCATGTAGTAGCTGACAGTTTCTGATAAATCTAGTTGATTTTATGTTATAATTCGTAAAGCGAGGAAGAAAGTGCTTATTAAGCAGAATCACAGAGAGGCTACCTCGAACAGAATAATACATTATTTTTCAATAGACGAAGGGCCTCTTTATCGAGTATTCCTACATATTGCATGTTCCTATTCAATTCACTTACCATTGTTATAATGGAAGTTGGAAAGGTTGTAAAAAAGCTTTCTTTGGCATGCGATGGACTGGGCAAAGAAATTCCACCCTGTTCATTGGCAAACTGGGACAACTCGTAAACAGTGTGGAGGGCTTGGGGTTAAAAACGTGAAGTTTTAAATTTACGTTATGACTGTGTGGAGATTTGGAGTGGAAGGAGAAGCTTTGTGGAGAGGGTTGATGGTGTACAAATTTAGAGTAATGGAGGGGGATGGAGGACCGATGTGATTACTATGCCTTTCGGCTATGGTGTGTTGAGAATAGAGTTAGTTTTGGGGGCTAAAATGGTCAAGGATGAGTTCCTGGTATTGTCTAGAGCTTCTTGCCAATGGGAATTGTCTGTTCAGCAAGCTAGGCGACACGAGGGGATGAAACTTTTTGGGATCGTTCATCAGCAATTTCCAGGATTGGGAGGTGATCGAGCTTTAGCGATTTCTTGCTTTACTTCACATACAATGCCAATCAATTGACAGACTCGATGCTTTAAGTTGGGAAATAACAGAGTGTTCTATGTCAGTCCTTCTATGAGAAGCGTCTGATTAGGGCAGAGGATAGTTTCCCATATCAATCAGTCTTGATATCTAAAGTGCCGAGGAAGGTGTGCTTCTTCACGTGGAATAGAGGGGCGATACTTACAGCGAAGACTCTTAGGGAGTGAGAAAGGCTGATTGCCAAAGCTGGTGTATCTTGTGTAAGGAGGTAGGTGATGACATGGATCATATGCTATTGCACTACCAAATAGCCACGAGGTTATGGTGGGATATATTTAGTTGGTTTGGAGTTTCTTGGACTATGCCAAAATCCATGTTGGAGTTAATGTTTAGATGGAAGAGTGGAACTAGGAGAAGAGCCACAAAGCTTGGCATGTTACTACTCTTGCTTCTTTTAATTTTAGATCATTTGGAAAGAGAAAGTATGTGAGCTTTTGAAGGGGTGGAGATGAGCTTTGATTAATTGAGGAGTAGTCTCCTATATTTTTTTTTGTTGCACCTATATAGTTCCTGTTTGCATAGAGAATTGAGTGTCTTCGGGAGAGAACCACATTTGTAGATCTCTCCTTTTTGGTGTACCTCTTGTATACAGCCATATGACCTTGTTATTGTTGTTGAAATCTTTTACTTGGATTTAAAATAAAATAAAATATATCAAGCGACCTTCTAATTCTGTTATCAAACACATCTAATGTCTTTCTCACCTGATATATTCAATTTTATATGTTTAGTTTTGTTATCAAGCAGCCTTTACAGCTCTACACCATTAATGAATTAGAAGGCCTGTTTTATCCATATGAGATTGCTATCTGCTTGGTTTTTGCACTGTTTTGTCTTGACGTTCTCTATCACCTCACCAGGAAAAGCTACAAGATTGGCTACTTAAATTACAACGGTCACTTCAAGAAGAAACTGATGGTGAAAAAAAGAAGTTTGAGCTAAGTAGCTGTATGTTCTATCAACCTATTTCATCTATCTTAGTCTGTACTACTTTCATAGATAGCTGTTCGTGGCTATGCTACGCCATTGTATGGTGTGGGCGCCACCCACAACATTTGACTGGTTGTGGTCGCACTAGTAAGAAGTAATTAATGTTCTGTTCCAAACCAATTTGTTTCTGGTAGTGAGATTTTCAGTTACCCTCGTCACGTTTTAATTTATCTCTCAGGAAATCTTCCTTTGTCCTATACTGTTTGCTAGTTAGAGTCACAGGGGCATAAGAGATCTACTTAGAGCCTGTTTGGATTGACTTTCGACTTGTAAGCCACAAGTAAGCCAGAAGTCATAAGTTAGAAATTCTAACTTATGGTTTTTGTCTTATTTTAATCATTTTAGCTTAAACTGTAAGCACTTCTTTACCCAAACACTCCAAAAGTGCTTAAAATTTATTTTGGCTTAAAAACACTTAAAATAAGTCAATCCAAGCAGGCTCTATGAAGCTCCAAGTTTACATGCTTTTCTGTTAGTTTAATGGTGCTGATAGATGTACTAAAGTTCAGAAGATTTGGGCTTTCACTTTCTTTTTCTTTTAATCAACTCAGTTTTTACATAGATCAAATCCGGGCATATTGGATTCTAGAACTTGATTCAAATTTTGAGTAGACTTCATCTGTTTTTATGACATATTGCAGTGACAGACGTCAAGAAGGCTATTGAAAAAAATGCTCCCAAACAGATTGGCTTGACTATTGAGAGCATGTTGAAGACTGGGAGATTGGCTACACAATCAGGTCTTGATTTGCAGCAGGTATTTAGTTGTCAAGCTTTTATGCGAAGCACCACTGACTCTTTTTTTTTTTTTGGACAAGGTAACAGGCAAGCACCGATAACTCTTTATTGAAAAACAACTGTGAATCCCAGTAACTAGGAAATTTATATTGTAACAGATGTGTCTTCGTTCCCGTCTTTCTCTTGTTCTTTGTCAAATTTCAAACTTCTTTATCTTATGAAAGGAAAACTAAATTTGCATTCTCTATTTTATCTGATAACCACCATAGGATGTCATATAGGAAGAAGGTTCTCAAGGAGGGAAAGCTAATTACCATTACCAGTTTTTTTAAAAAAGGGAAGAAAAAGGCAAACTAAACTGACATAAAATGGACAAAAATTCAATTGATTACTTCTGAAAACTGTCATCTTCTGCCCCAAAGTTAACATACATACAGTGTTGGATTGAAATACTTGACAAAAAATAATACTCAAGTGCATTATTGAAGAAGCTCTGCACCAAGTAGATTGGAGTACCATTTCCTCCAGGACTCTGGTCAGTGGCAAGAGCACAGTTGATTAGGTGATGAGTTTGAACCATGCCACAAACAAATCCTTGTATTTAAGTGGAGAAGGGTAGAGGGCGGGCTCATTGTACACGGAGTTTCAACCATGCATCATTAACACTATGGATTTCTCGGTTATGAAAATGGAAGGTAGATTGGAGTACCATAGTGAGCAAGAAGAATGTGTGCTTAAAGATATTCGATTTCTAGTGGTTTTCTATTTGTCTTTGTAAATCTTTACCCAACAGCTTATAATCACTTTATGCTATTGGTGCAGTTTGGAGTATGTAGATGATCCTATAGTTGTTAGAGATATCCTAGGTCCTTTGTAAGATGAAGTAGGATCTAGTTTAGTTTTTGTTTTAACTACACACAACTGTATGTAGCTCCATGGTGTAAATTTGGGACCCCAGCCTTTAGTGCTGAAGATTAATACACAAAACTGTTACCTTTGTCCAAAAAAAAACACACACACTGTATTCTAATTGCACCAAATAATAATTAGTACAAGTGTGCAAACAGATTCACTGCGAATGTGCGATTCAGGGCTAAACAATTTTTGGCAGTGAATCAAAATCGGTTCGTAATGCAACCTCCACACGTGAAGCTATTCAAGAGGAAAGCCCTGCACCTCAATTTCTTGTCCATGGCTCATAGTTAGACTGAGATGAAGGCCCTCTCTGTGAGTCTGTTATTCATGTTGTAGTTCAAATGATTGACAACAGAGGAGTTTGATAGGATTCTCTTCTTTTCTCGAGGGTTATTGGCATAGGACAGAATAAAAAGTAACAACTTGCAGGTGTTTCTGAAACATCGAGTAGGTTCTCTTTTTTTTTTTATGGGGGCATGGGGGTGGGGGAGTGTGAAGGTGGGTACAACAACAACATACCCAATGTAATCCCGCAAGTGAGATTCGAGATGGTTAGACTGTACGCAGACCTACACCTACCTTTTGGAGGTAGTGAGTATAAAAGTGAGTGACTACATAAAATACATAGATGGATAGCAGCTTTCCGTTGGATAATCTAATTAACTGTAAGAGATATTTAACTCCATTTTCAATTGCTTCTGCTAGTACCTCTAGTTGAGCAGGTTCTTCCCGTTTTAGAGGAAGTGAATTGTTGTAATTAATGATGGTTGTTACGAAAAAAGTTGTATGAATAATATAATTATTGTTGCAGAAGATAGCACAGTTCTTACAGAATGGAGGTTAATTTTAGCTTCTCTGATATTAGACTTATTTACATTATTTTATGGAAAGTGGACCTCTGGAATCATCTACTCATGAGTATCTTGACTTGGTTGTTTTTTGGTTAGAGAGCTGGAATGACTGTCCAGGCAGAAAAGTTAAATTTCCTCCGTTTTCTTTCACATTTTCGAGCGGTTCATCGAGGTGCCTCATTTGCTGGTCTTCGTACTACAAGTGTGCGGAAGTTGTTACCTGAGTATGTTGTCTTTTTATCTGAGCTAATTGCTTTATTTTCATAAAAAAATCACTTGAGGTTCCATTCATATTTTCCTGGTCCACCATTTTTCAGATCTTGGGGTTTCCTTTGTCCTGTTCACACACCTGATGGGGAGCCATGTGGGTTGCTTAATCATATGACTGCATCTTGCCGTAAGTTACATTTTTTTTCCTTTTTGGTAATATCAGTTGTATACACCAACCTAAATTTGTGGATGTAATCTTGTTTATACTCTTATTTTCCTTAGCCTTTATCTGTTATGGGATGTCGCTTTTGCTCCCATTGTCCAAGAAACATTTTTTTTCTTGGCCAGTTTGAGAAGTGACAGACTGACAGTGTTCCTCATGTTCTGCATTCACTAGAAATTTTCTTCTTATCATATTTATTCTGCCATAGGTGAAATTCAGTCACCATTTTTTGGCAAGAGTTTATACAAGCTGGTACTTTCAGGGGTGAAGTTAACCTTAATATCACAAACGTTTATATATTGCTACATTCATTGCTCCAATAGCCTATTATTTGCTGCACATATCTCTGACTCCCTGCATCATATTCACATCACTGATTAAACAACTCATATCACACAGGAAATATGAGGTCCTGTACTATTTGTGGTTCACATTGTGTCTTTGTTATTTATTAGTCAAATATTGAATTTTTGCACTAATTGCATTCATATTTATGTTTGTAAGTCCTAATCCTATTGCCGTTGATTAGTTTTGTTCACTTCATTTATAATACACAGTACAATATTAGCTCCCTTCACTTTAATACAATCATTCTGTTACCAGGCATAACCTCATACTATGATTCAAAGGGCAATGTTAAAGACTTCTTCAAAATGCGGATGTCCATATTGAATGTGCTGATTGCAATTGGAATGACACCATCATCACCAAAGCTTGTGCAAGCTGGTCCTCCTGAATTGCTGTCTGTCCTACTGGATGGTCGTATTGCGGGCTATATACCGTCGGATTTAATTGAAAAGGCTGTTACCCACTTGCGGAGATTGAAATTGTCATCAACATCATCGGTTTGTTTCTGATCGACTTTTTTTAGCCAAAGATCTTTTGTATAGCGACTTATTATGCACCTACTTCACAGTAGATTCCAGTTGATTTGGAGGTTGGATACATCCCTTTGAGCATGAATGGAGCATATCCAGGCCTATATCTGTTCACATCTCCTTCTAGGTTTGTTCGTCCTGTAAGAAACATCTCTGCGCCTGCTGAAGAGGGCAATGATCTTGAACTCATTGGACCCTTTGAACAGGTGGGTTCTGCATTTCTTGATTTTTCCTTTTATTAATTTTCATCTTCTTTATCAACAAACATGAACTTGATGAGCTTTTTTACTAATGAGAACCTCCAATATAATGATTGCTAGGTTGTGTATTTGTAATGTGCAGGTGTATATGGAGATAAGCTGCCCGGATGGTGGAGATGGAGGAAGGAAAACCTTATTCCCTGCCACACATCGAGAAATTCATCCAACTAATATTTTGAGTGTTGTTGGCAATCTTACACCTTGGTCTGATCATAATCAGAGTCCACGTAATATGTATCAATGTCAGGTGAAGTGTTAAATTTGAAATAATCTCTGGATAATGTTATATAGACTGCTGAGGCTCAATGCATTATTGTATCTCATGTTTCATCTATTGTGCAGATGGGTAAACAAACAATGGGTTTCTCCTCACAAGCATTAAATTGTCGTGCTGATCAAAAGTTATATCACCTTCAGGTTTGTCCTGGTTATTATTTGCAATTCAATTCGTTCATGAGTTAGTTGTTGCCAGCCCCCAAGTTGAGTTCAATGGCATCCTATTTTAAATAGTTTTTAAAGTGTGTTGATTCATATTGAGAATTTGGTGCTTGGGCCAAGCACATCTGTGTAGTTTTTCTGGTGGAGGCAGAAAGACAAGAGATGTATGGGATTAGTTAAAGGGATTGAAACATACTGTTTCCGTACAGTAGTTTACAGTGAATAGAAGAATGATGAAAGCATGAATGGATTATGGTGTTGTAGCTATGCTATGTATTATGTTATATTTGAAATTGATGCTCATGTTCTTGCTGTTTCAGTGACCAAGGATGTTTGCTACAGTGAGCTGATTTTTTTTTTATGTGTTATGCATCTTGGTATTATTTATTTTTATCTTGTAAAAATGTGTAGCAAGCAAGCATTCAGCTGAAAGATTCTCTGGGACAGTGGGTAAGGTGGATCATCTTTGAATAGGATAGTTTTATGAGACTATCAGTCAGAACATGTGTAACATATTCAATAGAACATTTCTTTATGGTGTTGTTTTTGCTGTTGTGTTGGATTACCTGTGTGTATATCTAGTTCCACGTGCTACTGGTTCACATTTTTTTAATTTCATTTCCTTGTAACAGCTGTAATTATTCAGACTTAAGAACTTATGTTGCTAATTTTTTTGCTTTTGAGATTTTATTTTCTCTTGTCTGATCTTTTCTTTTTCTTCGGGAAATTGGATCTTTACAGACTCCTCAAACCCCAATTGTACGCACAAAAGCTTATGAGAAGTATTGTGTTGATGACTATCCATTAGGAACAAATGCAATTGTGGCAGTTTTGGCTTATTCAGGGTAAGAGTTCTGTACGTGCCTTGTTTGATTTTTTATCAGCGGAAACATAAAATACATACCTTCATGTTATGCAGATATGACATGGAAGACGCTATGGTCTTAAATAAATCATCTGTAGATCGTGGTATGTGTCATGGGCATATATACCAGGTATCATTTGACATTTTAAAAAGCTTTTTGGACTTCGTTTTTTTGATACAGAAACAACTTTTTTGTTCAACCCCCCACCCCCCAAGGGAATACAAATACATCTATCGGACTATGATATTTTCCTTTTTACACTACATTAATGGAGTTTTAAGTTATTGTACCAATGATTTGTCTACGATAAGTTTTCAGAAGGATGATTCTCATCAACTCAAACCTTCTTTGAGACCACACACAACACCATGAACTTTGATGCTTGATGGTCTTTTTGTTTCTCTTCTTTAGTTGGAGGGTCGAAGAATGAAAACCAGATCTATCTCTGTTCTTTTTCCTATTTTAGGTGTTTAGATTCTTATATAATTGATCCCTCCCTTGCTAAACTACTTATCCTACTTTTCTTTGTGGAGGTAGTTTTCTGATCTTTCACGTTGACGTCTTTATTGACCAATATATGATCTTCTGATTTGCAGACAGAAACCATTGACTTGACTGAGCAAAGCGCCAAATCTGATCGTGCTCAGAGATTGTTTAGAAGAAGCAATTTGGATAAGTCGTCTCATCAGCTGATTGATTCTGATGGTCTTCCATACGTGGGACAGGTAACGGAATATTTTTTTTCCTATTTTTTTGGTGAGTCAAGTTGCACCTGAACCAACATGATCATTTGGTTGCAGAGGATTAATCCAAATGAGCCATATTGTAGTATTTACAATGAAATAACCAGTCAGACAACTTGTATGAAGTTGAAGGGTTCGGAGCCTGTTGTTGTTGATTATGTTGCTGTCGATGTGAAAAATAAAGCACATCTGCAGAAGGTGAGCAATTCCTCGATATATTTGACTATTAAAAGATACATCTCTGTTCTTTTACTGGGTTTCTAATTCACTTTGCTGTTGTTATCCTCTTTGTTGAGGATATATTAGTTGGTGTAGTTCTTTCATCTTTTGCTTTCTATTTCTCTTGAACTCAATGTCAACTTTTATTTAGCATAGATGACTGAGTATCATTGCCTGACTTCGTATCATTGCCTGGTCAATATATCTCTTTATTTCATTGAATCAAGGTAAGTTGATGTTTTCTTGGGTATTCATGTTCTTCAGGGGGTTTTGGTACTATTTACTGTCTTTTCTGTCTTCTAAAGTATTGGATGCTTCCTTTGATGCTGCACTTGTAGATTTATTGTGCTTATCAAATGTTGCAACTATCGTTACTTATCATTTTATTTTTTTTTGTCGTTGTAATAACAAAAATTTTGGTAGTTCGTGATGGAAAATCCTCTCTTAGCTACAAATTTACTCTGGTGTTCATGACCTTGAAAAACTTCAAATTTATCAACTTATTTGCATTTGTTTTGGGCAGGCGAATATACGTTTTAGGCGCTCCAGGAATCCTGTAATTGGTGATAAATTTAGCAGCCGACATGGGCAAAAGGGTGTTTGCTCTCAATTATGGCCTGATGTTGATATGCCCTTCTCAGCAGTTACAGGCATGAGGCCAGATCTTATTATTAATCCTCATGCTTTCCCTTCAAGGATGACAATTGCTATGCTGTTGGAGTCGATTGCTGCTAAGGTCTGTTTTCTCTTCTGCCGCGTATGGTGTTATTTATTTTAAGCAAAAGTATTTTGGTTAAGAGATTGTAGCTCTCCAGACAATAATATATTCAAGTAGTTTTTGTGGTAGTTTATATTTGTTTATTGGGTGATGGCTTCATATGCTGAAGATATCTCTCGCTTATGGAATCTATGGTTCATCTAGCTTGACATGGATGATCACAAGAATTTATATATATGCTATCTTCGAGCAGGGGGGTGCTTTACATGGGAAGTTTGTTGATGCAACGCCGTTCTCTAACACAATGAAGGAATCAGAATCGGAATCCAGTTCACTTGTGGATGACCTTGGTTCCATGTTAGCGGTTTGTGGCTTCAATCACCATGGTACGGAAGTACTATATAGTGGAGTATATGGGACAGAACTGACTTGTCGAATATTTATTGGACCTGTTTATTATCAGCGTCTGCGACACAT</genome_strand>
        <mrna_strand>CGAGATATACGTCAATTTAACATGTTGCTACAATGAGGAATGTGACCGTGTAAAGGGATCTGTCGGCACCCAGCTTGTTGGTGAAAGAGCAAAAATTATCCTGGATGAAGTTCAGGCCCTATCTCTTTTTACCCGAGCACAGTGCCTGCGACATATTG....................................................................................GGGAGCATTTCCAACCTGTTGTGATCGGAATGCAAAATGATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGAGGCCAGATCTTATTATTAATCCTCATGCTTTCCCTTCAAGGATGACAATTGCTATGCTGTTGGAGTCGATTGCTGCTAAG...........................................................................................................................................................................................................................................GGGGGTGCTTTACATGGGAAGTTTGTTGATGCAACGCCGTTCTCTAACACAATGAAGGAATCAGAATCGGAATCCAGTTCACTTGTGGATGACCTTGGTTCCATGTTAGCGGTTTGTGGCTTCAATCACCATGGTACGGAAGTACTATATAGTGGAGTATATGGGACAGAACTGACTTGTCGAATATTTATTGGACCTGTTTATTATCAGCGTCTGCGACACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585197" ref_strand="+" ref_description="SGN-E585197 [66916]">
      <seq>ttatctgcacctgctgaagagggcaatgatcttgaactcgttggaccctttgaacaggtgtatatggagataagctgcccggatggtggagatggaggaaggaaaaccttattccctgccacacatcgagaaattcatccaactaatattttgagtgttgttggcaatcttacaccttggtctgatcataatcagagtccacgtaatatgtatcagtgtcagatgggtaaacaaacaatgggtttctcctcacaagcattaaattgtcgtgctgatcaaaagttatatcaccttcagactcctcaaaccccaattgtacgcacaaaagcttatgagaagtactgtgttgatgactatccattaggaacaaatgcaattgtggcagttttggcttattcaggatatgacatggaggacgctatggtcttaaataaatcatctgtagatcgtggtatgtgtcatgggcatatataccagacagaaaccattgacttgactgagcaaagcgccaaatctgatcgtgctcagagattgtttagaagaagcaatttggataagtcgtctcatcagctgattgatactgatggtcttccatacgtgggacagaggattaatcccaatgagccatattgtagcatttacaatgaaataaccagtcagacaactagtatgaagttaaagggttcgggagcctgttgttgctgattatgttgctgctgatgtgaaaaataaaacacatctgcagaaagggaatatacgtttaggcgctccaggaaatcctgtaattgggtgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="127417" stop="123871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127118" g_stop="127062" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127061" i_stop="126926" i_length="136">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126925" g_stop="126761" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="222" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126760" i_stop="126666" i_length="95">
            <donor d_prob="0.877" d_score="0.98"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126665" g_stop="126591" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="297" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126590" i_stop="125829" i_length="762">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125828" g_stop="125725" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="401" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="125724" i_stop="125651" i_length="74">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125650" g_stop="125575" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="477" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="125574" i_stop="125108" i_length="467">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="125107" g_stop="124979" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="606" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="124978" i_stop="124904" i_length="75">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.914" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="124903" g_stop="124763" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="748" r_length="142" r_score="0.922"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="124762" i_stop="124219" i_length="544">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="124218" g_stop="124172" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="796" r_length="48" r_score="0.851"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E585197" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127118" e_stop="127062"/>
          <exon e_start="126925" e_stop="126761"/>
          <exon e_start="126665" e_stop="126591"/>
          <exon e_start="125828" e_stop="125725"/>
          <exon e_start="125650" e_stop="125575"/>
          <exon e_start="125107" e_stop="124979"/>
          <exon e_start="124903" e_stop="124763"/>
          <exon e_start="124218" e_stop="124172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTGCGCCTGCTGAAGAGGGCAATGATCTTGAACTCATTGGACCCTTTGAACAGGTGGGTTCTGCATTTCTTGATTTTTCCTTTTATTAATTTTCATCTTCTTTATCAACAAACATGAACTTGATGAGCTTTTTTACTAATGAGAACCTCCAATATAATGATTGCTAGGTTGTGTATTTGTAATGTGCAGGTGTATATGGAGATAAGCTGCCCGGATGGTGGAGATGGAGGAAGGAAAACCTTATTCCCTGCCACACATCGAGAAATTCATCCAACTAATATTTTGAGTGTTGTTGGCAATCTTACACCTTGGTCTGATCATAATCAGAGTCCACGTAATATGTATCAATGTCAGGTGAAGTGTTAAATTTGAAATAATCTCTGGATAATGTTATATAGACTGCTGAGGCTCAATGCATTATTGTATCTCATGTTTCATCTATTGTGCAGATGGGTAAACAAACAATGGGTTTCTCCTCACAAGCATTAAATTGTCGTGCTGATCAAAAGTTATATCACCTTCAGGTTTGTCCTGGTTATTATTTGCAATTCAATTCGTTCATGAGTTAGTTGTTGCCAGCCCCCAAGTTGAGTTCAATGGCATCCTATTTTAAATAGTTTTTAAAGTGTGTTGATTCATATTGAGAATTTGGTGCTTGGGCCAAGCACATCTGTGTAGTTTTTCTGGTGGAGGCAGAAAGACAAGAGATGTATGGGATTAGTTAAAGGGATTGAAACATACTGTTTCCGTACAGTAGTTTACAGTGAATAGAAGAATGATGAAAGCATGAATGGATTATGGTGTTGTAGCTATGCTATGTATTATGTTATATTTGAAATTGATGCTCATGTTCTTGCTGTTTCAGTGACCAAGGATGTTTGCTACAGTGAGCTGATTTTTTTTTTATGTGTTATGCATCTTGGTATTATTTATTTTTATCTTGTAAAAATGTGTAGCAAGCAAGCATTCAGCTGAAAGATTCTCTGGGACAGTGGGTAAGGTGGATCATCTTTGAATAGGATAGTTTTATGAGACTATCAGTCAGAACATGTGTAACATATTCAATAGAACATTTCTTTATGGTGTTGTTTTTGCTGTTGTGTTGGATTACCTGTGTGTATATCTAGTTCCACGTGCTACTGGTTCACATTTTTTTAATTTCATTTCCTTGTAACAGCTGTAATTATTCAGACTTAAGAACTTATGTTGCTAATTTTTTTGCTTTTGAGATTTTATTTTCTCTTGTCTGATCTTTTCTTTTTCTTCGGGAAATTGGATCTTTACAGACTCCTCAAACCCCAATTGTACGCACAAAAGCTTATGAGAAGTATTGTGTTGATGACTATCCATTAGGAACAAATGCAATTGTGGCAGTTTTGGCTTATTCAGGGTAAGAGTTCTGTACGTGCCTTGTTTGATTTTTTATCAGCGGAAACATAAAATACATACCTTCATGTTATGCAGATATGACATGGAAGACGCTATGGTCTTAAATAAATCATCTGTAGATCGTGGTATGTGTCATGGGCATATATACCAGGTATCATTTGACATTTTAAAAAGCTTTTTGGACTTCGTTTTTTTGATACAGAAACAACTTTTTTGTTCAACCCCCCACCCCCCAAGGGAATACAAATACATCTATCGGACTATGATATTTTCCTTTTTACACTACATTAATGGAGTTTTAAGTTATTGTACCAATGATTTGTCTACGATAAGTTTTCAGAAGGATGATTCTCATCAACTCAAACCTTCTTTGAGACCACACACAACACCATGAACTTTGATGCTTGATGGTCTTTTTGTTTCTCTTCTTTAGTTGGAGGGTCGAAGAATGAAAACCAGATCTATCTCTGTTCTTTTTCCTATTTTAGGTGTTTAGATTCTTATATAATTGATCCCTCCCTTGCTAAACTACTTATCCTACTTTTCTTTGTGGAGGTAGTTTTCTGATCTTTCACGTTGACGTCTTTATTGACCAATATATGATCTTCTGATTTGCAGACAGAAACCATTGACTTGACTGAGCAAAGCGCCAAATCTGATCGTGCTCAGAGATTGTTTAGAAGAAGCAATTTGGATAAGTCGTCTCATCAGCTGATTGATTCTGATGGTCTTCCATACGTGGGACAGGTAACGGAATATTTTTTTTCCTATTTTTTTGGTGAGTCAAGTTGCACCTGAACCAACATGATCATTTGGTTGCAGAGGATTAATCCAAATGAGCCATATTGTAGTATTTACAATGAAATAACCAGTCAGACAACTTGTATGAAGTTGAAGGGTTC-GGAGCCTGTTGTTGTTGATTATGTTGCTGTCGATGTGAAAAATAAAGCACATCTGCAGAAGGTGAGCAATTCCTCGATATATTTGACTATTAAAAGATACATCTCTGTTCTTTTACTGGGTTTCTAATTCACTTTGCTGTTGTTATCCTCTTTGTTGAGGATATATTAGTTGGTGTAGTTCTTTCATCTTTTGCTTTCTATTTCTCTTGAACTCAATGTCAACTTTTATTTAGCATAGATGACTGAGTATCATTGCCTGACTTCGTATCATTGCCTGGTCAATATATCTCTTTATTTCATTGAATCAAGGTAAGTTGATGTTTTCTTGGGTATTCATGTTCTTCAGGGGGTTTTGGTACTATTTACTGTCTTTTCTGTCTTCTAAAGTATTGGATGCTTCCTTTGATGCTGCACTTGTAGATTTATTGTGCTTATCAAATGTTGCAACTATCGTTACTTATCATTTTATTTTTTTTTGTCGTTGTAATAACAAAAATTTTGGTAGTTCGTGATGGAAAATCCTCTCTTAGCTACAAATTTACTCTGGTGTTCATGACCTTGAAAAACTTCAAATTTATCAACTTATTTGCATTTGTTTTGGGCAGGCGAATATACGTTTTAGGCGCTCCAGG-AATCCTGTAATT-GGTGATAA</genome_strand>
        <mrna_strand>TTATCTGCACCTGCTGAAGAGGGCAATGATCTTGAACTCGTTGGACCCTTTGAACAG........................................................................................................................................GTGTATATGGAGATAAGCTGCCCGGATGGTGGAGATGGAGGAAGGAAAACCTTATTCCCTGCCACACATCGAGAAATTCATCCAACTAATATTTTGAGTGTTGTTGGCAATCTTACACCTTGGTCTGATCATAATCAGAGTCCACGTAATATGTATCAGTGTCAG...............................................................................................ATGGGTAAACAAACAATGGGTTTCTCCTCACAAGCATTAAATTGTCGTGCTGATCAAAAGTTATATCACCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCTCAAACCCCAATTGTACGCACAAAAGCTTATGAGAAGTACTGTGTTGATGACTATCCATTAGGAACAAATGCAATTGTGGCAGTTTTGGCTTATTCAGG..........................................................................ATATGACATGGAGGACGCTATGGTCTTAAATAAATCATCTGTAGATCGTGGTATGTGTCATGGGCATATATACCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAAACCATTGACTTGACTGAGCAAAGCGCCAAATCTGATCGTGCTCAGAGATTGTTTAGAAGAAGCAATTTGGATAAGTCGTCTCATCAGCTGATTGATACTGATGGTCTTCCATACGTGGGACAG...........................................................................AGGATTAATCCCAATGAGCCATATTGTAGCATTTACAATGAAATAACCAGTCAGACAACTAGTATGAAGTTAAAGGGTTCGGGAGCCTGTTGTTGCTGATTATGTTGCTGCTGATGTGAAAAATAAAACACATCTGCAGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAATATACG-TTTAGGCGCTCCAGGAAATCCTGTAATTGGGTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470036" ref_strand="+" ref_description="SGN-E470036 [cSTB-16-D18]">
      <seq>cttcgaggtgcctcatttgctggacttcgtactacaagtgtgcggaagttgttacctgaatcttggggtttcctttgtcctgttcacacacctgatggggagccatgtgggttgcttaatcatatgactgcatcttgccgcataacctcatactatgattcaaagggcaatgttaaagacttcttcaaaatgcggatgtccatattgaatgtgctgattgcaattggaatgacaccacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="128713" stop="127142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128413" g_stop="128355" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128354" i_stop="128262" i_length="93">
            <donor d_prob="0.935" d_score="0.98"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128261" g_stop="128182" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="139" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128181" i_stop="127543" i_length="639">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127542" g_stop="127442" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="240" r_length="101" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E470036" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128413" e_stop="128355"/>
          <exon e_start="128261" e_stop="128182"/>
          <exon e_start="127542" e_stop="127442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGAGGTGCCTCATTTGCTGGTCTTCGTACTACAAGTGTGCGGAAGTTGTTACCTGAGTATGTTGTCTTTTTATCTGAGCTAATTGCTTTATTTTCATAAAAAAATCACTTGAGGTTCCATTCATATTTTCCTGGTCCACCATTTTTCAGATCTTGGGGTTTCCTTTGTCCTGTTCACACACCTGATGGGGAGCCATGTGGGTTGCTTAATCATATGACTGCATCTTGCCGTAAGTTACATTTTTTTTCCTTTTTGGTAATATCAGTTGTATACACCAACCTAAATTTGTGGATGTAATCTTGTTTATACTCTTATTTTCCTTAGCCTTTATCTGTTATGGGATGTCGCTTTTGCTCCCATTGTCCAAGAAACATTTTTTTTCTTGGCCAGTTTGAGAAGTGACAGACTGACAGTGTTCCTCATGTTCTGCATTCACTAGAAATTTTCTTCTTATCATATTTATTCTGCCATAGGTGAAATTCAGTCACCATTTTTTGGCAAGAGTTTATACAAGCTGGTACTTTCAGGGGTGAAGTTAACCTTAATATCACAAACGTTTATATATTGCTACATTCATTGCTCCAATAGCCTATTATTTGCTGCACATATCTCTGACTCCCTGCATCATATTCACATCACTGATTAAACAACTCATATCACACAGGAAATATGAGGTCCTGTACTATTTGTGGTTCACATTGTGTCTTTGTTATTTATTAGTCAAATATTGAATTTTTGCACTAATTGCATTCATATTTATGTTTGTAAGTCCTAATCCTATTGCCGTTGATTAGTTTTGTTCACTTCATTTATAATACACAGTACAATATTAGCTCCCTTCACTTTAATACAATCATTCTGTTACCAGGCATAACCTCATACTATGATTCAAAGGGCAATGTTAAAGACTTCTTCAAAATGCGGATGTCCATATTGAATGTGCTGATTGCAATTGGAATGACACCATCA</genome_strand>
        <mrna_strand>CTTCGAGGTGCCTCATTTGCTGGACTTCGTACTACAAGTGTGCGGAAGTTGTTACCTGA.............................................................................................ATCTTGGGGTTTCCTTTGTCCTGTTCACACACCTGATGGGGAGCCATGTGGGTTGCTTAATCATATGACTGCATCTTGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAACCTCATACTATGATTCAAAGGGCAATGTTAAAGACTTCTTCAAAATGCGGATGTCCATATTGAATGTGCTGATTGCAATTGGAATGACACCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480834" ref_strand="+" ref_description="SGN-E480834 [cSTD-15-B9]">
      <seq>aaagagcaaaaattatcctggatgaagttcaggccctatctcttttcacccgagcacagtgcctgcgacatattggggagcatttccaacctgttgtgattggaatgcaaaatgatagttacaaaactgttgccgatgctgtgcttagagactacatgtttgtccatctggataacaatcatgataaatttaatctacttatctttatgttgcagaagcttttctctctgatagatcagacttctgtcctagacaatccagactctctgcaaaatcaagaagttttgctgccgggtcacttaattaccatatatctgaaggaaaagctacaagattggctgcttaaattacaacggtcacttcaggaagaaactgatggtgaaaaaaagaagtttgagctaagtagcttgacagacgtcaagaaggctattgaaaaaaatgctcccaaacagattggcttggctattgagagcatgttgaagactgggagattggctacacaatcaggtcttgatttgcagcagagagctggaatgactgtccaggcagaaaagttaaatttccttcgttttctttcacattttcgagcggttcatcgaggtgcctcatttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="134867" stop="128092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134567" g_stop="134493" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134492" i_stop="134409" i_length="84">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134408" g_stop="134356" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="128" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134355" i_stop="134247" i_length="109">
            <donor d_prob="0.810" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134246" g_stop="134173" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="202" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="134172" i_stop="134066" i_length="107">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.889" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134065" g_stop="133948" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="320" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="133947" i_stop="131213" i_length="2735">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="131212" g_stop="131125" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="408" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="131124" i_stop="130442" i_length="683">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="130441" g_stop="130326" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="524" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="130325" i_stop="128483" i_length="1843">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="128482" g_stop="128392" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="615" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E480834" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134567" e_stop="134493"/>
          <exon e_start="134408" e_stop="134356"/>
          <exon e_start="134246" e_stop="134173"/>
          <exon e_start="134065" e_stop="133948"/>
          <exon e_start="131212" e_stop="131125"/>
          <exon e_start="130441" e_stop="130326"/>
          <exon e_start="128482" e_stop="128392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGCAAAAATTATCCTGGATGAAGTTCAGGCCCTATCTCTTTTTACCCGAGCACAGTGCCTGCGACATATTGGTACTTGTTTTATTTACTATCATGGTTAACTGTGATCTTATCAAATGACTGTCAACTGCATATGATCAATCTTCCACTTTTCAGGGGAGCATTTCCAACCTGTTGTGATCGGAATGCAAAATGATAGTTACAAAACTGTAAGTGTTATCTTGGTTGTACTTGTCATGATTTAGTTCTAGAAGTCAGAACAGACATATTTTTCTAGAGATGATACCTTTACATCACATTCTCTCTCTCACTTGACAGGTTGCTGATGCTGTGCTTAGAGACTACATATTTGTCCATCTGGATAACAATCATGATAAATTTAATCTACTTATGTTAGTATTTTTTTCTCTGGAAAATTGTCTTGTGATTTTATGGTAACTCTTCCATCTACAGTTGTATGTTTTGGCTATTGATATATTGATACTCCTGCTTTATTTAGCTTTATGTTGCAGAAGCTTTTCTCTCTGATAGATCAGACATCTGTCCTAGACAATCCAGACTCTCTGCAAAATCAAGAAGTTTTGCTGCCGGGTCACTTAATTACCATATATCTGAAGGTCCAAACTTTTAAATTTCCTTTTTAAGGAATAATTGTTATGTGACATTGGATGTGATGCTTATATAGTAAGTGCCTCATAGAAATGTGTATTGTCATTCTTCTTTGGGCTAAAAGAACCTTATATCCAGGATCAATTAAGTGGAGAGTTAAGTGATTACTCAATCAATCAAATACACCTAGTTGGCTATTGCTTTATGAATCATCTGTATCAATCATGCTCTATTCAAGCCCATCACAGTCCAGTATTGAGTACGTTTTTTATGTGGAGTGTTAGGCATGCTCTAAGTGCTTTAGTTGTCTGTGACTTCTTATGGTTGCAGTACATGATATGAATGTATGAATGTTTTCTTTTGGTTTCACAAGGCAAAAAAGAACGGATGATGTTTTTAAGGACAATTGGCCACTCTCGACTGTATTGGGTCCTGTAGTAATCATTTGCACTTCGGTGTTACTTGGGAATATCAAAGAAATGGATGGGTACTTCTAACTTTTGAGCTCCTTGGAGCTATACAGTTAGACGTCACTTCCTTATTAAGTCTTACCTGATTAACAAAGTACTTTAAGGATCTTCTATTGCATTATTAATTAGCAAGAGACTTATTGGGAATATTCTATTCCTGTTTGGCTCATATTGGGTCATGCCTCTACTTACAAGACTGCATTACATCATGGTCTAGTTTGAAGATGGGAAAGAAGATACCGAATTCTGTTCACGAGTCCCAAATTTAATGCTTCTTGTATCTTATTTATAAAGAAGGGGATCTGAAAATTGGTACAGTTCATGAACTTCTTAAATTTCCACTTGATTTGTTTTTTGATCCTTTCACACTTTCTACGTTGATTTTTACTTTGCTTCTTCTTCCATTCCACTTTCTTGGTGCTTTTATTCCCACTATTCATTCGCTTTTAGCAGAAAAACATGAGGATTGATTGTTTCATTCGCTGGACATTCATGAAATCAGTTGCAGAAGCTTATGACTTGAAATGTCTTAACTTGTTCAAGTTCTTTTTACTTTTATATGCTCAAAAAGTAATATTATTTAATTATGAATATGATAATCTGATTGTGTATGTTAAATATATCTATAAAATAGTTTAATATAGTTGTCACCTTAATCTTTCAATATGTTGTTTTTTGAATTTGAGTTGTGATATATACCATGTAGTAGCTGACAGTTTCTGATAAATCTAGTTGATTTTATGTTATAATTCGTAAAGCGAGGAAGAAAGTGCTTATTAAGCAGAATCACAGAGAGGCTACCTCGAACAGAATAATACATTATTTTTCAATAGACGAAGGGCCTCTTTATCGAGTATTCCTACATATTGCATGTTCCTATTCAATTCACTTACCATTGTTATAATGGAAGTTGGAAAGGTTGTAAAAAAGCTTTCTTTGGCATGCGATGGACTGGGCAAAGAAATTCCACCCTGTTCATTGGCAAACTGGGACAACTCGTAAACAGTGTGGAGGGCTTGGGGTTAAAAACGTGAAGTTTTAAATTTACGTTATGACTGTGTGGAGATTTGGAGTGGAAGGAGAAGCTTTGTGGAGAGGGTTGATGGTGTACAAATTTAGAGTAATGGAGGGGGATGGAGGACCGATGTGATTACTATGCCTTTCGGCTATGGTGTGTTGAGAATAGAGTTAGTTTTGGGGGCTAAAATGGTCAAGGATGAGTTCCTGGTATTGTCTAGAGCTTCTTGCCAATGGGAATTGTCTGTTCAGCAAGCTAGGCGACACGAGGGGATGAAACTTTTTGGGATCGTTCATCAGCAATTTCCAGGATTGGGAGGTGATCGAGCTTTAGCGATTTCTTGCTTTACTTCACATACAATGCCAATCAATTGACAGACTCGATGCTTTAAGTTGGGAAATAACAGAGTGTTCTATGTCAGTCCTTCTATGAGAAGCGTCTGATTAGGGCAGAGGATAGTTTCCCATATCAATCAGTCTTGATATCTAAAGTGCCGAGGAAGGTGTGCTTCTTCACGTGGAATAGAGGGGCGATACTTACAGCGAAGACTCTTAGGGAGTGAGAAAGGCTGATTGCCAAAGCTGGTGTATCTTGTGTAAGGAGGTAGGTGATGACATGGATCATATGCTATTGCACTACCAAATAGCCACGAGGTTATGGTGGGATATATTTAGTTGGTTTGGAGTTTCTTGGACTATGCCAAAATCCATGTTGGAGTTAATGTTTAGATGGAAGAGTGGAACTAGGAGAAGAGCCACAAAGCTTGGCATGTTACTACTCTTGCTTCTTTTAATTTTAGATCATTTGGAAAGAGAAAGTATGTGAGCTTTTGAAGGGGTGGAGATGAGCTTTGATTAATTGAGGAGTAGTCTCCTATATTTTTTTTTGTTGCACCTATATAGTTCCTGTTTGCATAGAGAATTGAGTGTCTTCGGGAGAGAACCACATTTGTAGATCTCTCCTTTTTGGTGTACCTCTTGTATACAGCCATATGACCTTGTTATTGTTGTTGAAATCTTTTACTTGGATTTAAAATAAAATAAAATATATCAAGCGACCTTCTAATTCTGTTATCAAACACATCTAATGTCTTTCTCACCTGATATATTCAATTTTATATGTTTAGTTTTGTTATCAAGCAGCCTTTACAGCTCTACACCATTAATGAATTAGAAGGCCTGTTTTATCCATATGAGATTGCTATCTGCTTGGTTTTTGCACTGTTTTGTCTTGACGTTCTCTATCACCTCACCAGGAAAAGCTACAAGATTGGCTACTTAAATTACAACGGTCACTTCAAGAAGAAACTGATGGTGAAAAAAAGAAGTTTGAGCTAAGTAGCTGTATGTTCTATCAACCTATTTCATCTATCTTAGTCTGTACTACTTTCATAGATAGCTGTTCGTGGCTATGCTACGCCATTGTATGGTGTGGGCGCCACCCACAACATTTGACTGGTTGTGGTCGCACTAGTAAGAAGTAATTAATGTTCTGTTCCAAACCAATTTGTTTCTGGTAGTGAGATTTTCAGTTACCCTCGTCACGTTTTAATTTATCTCTCAGGAAATCTTCCTTTGTCCTATACTGTTTGCTAGTTAGAGTCACAGGGGCATAAGAGATCTACTTAGAGCCTGTTTGGATTGACTTTCGACTTGTAAGCCACAAGTAAGCCAGAAGTCATAAGTTAGAAATTCTAACTTATGGTTTTTGTCTTATTTTAATCATTTTAGCTTAAACTGTAAGCACTTCTTTACCCAAACACTCCAAAAGTGCTTAAAATTTATTTTGGCTTAAAAACACTTAAAATAAGTCAATCCAAGCAGGCTCTATGAAGCTCCAAGTTTACATGCTTTTCTGTTAGTTTAATGGTGCTGATAGATGTACTAAAGTTCAGAAGATTTGGGCTTTCACTTTCTTTTTCTTTTAATCAACTCAGTTTTTACATAGATCAAATCCGGGCATATTGGATTCTAGAACTTGATTCAAATTTTGAGTAGACTTCATCTGTTTTTATGACATATTGCAGTGACAGACGTCAAGAAGGCTATTGAAAAAAATGCTCCCAAACAGATTGGCTTGACTATTGAGAGCATGTTGAAGACTGGGAGATTGGCTACACAATCAGGTCTTGATTTGCAGCAGGTATTTAGTTGTCAAGCTTTTATGCGAAGCACCACTGACTCTTTTTTTTTTTTTGGACAAGGTAACAGGCAAGCACCGATAACTCTTTATTGAAAAACAACTGTGAATCCCAGTAACTAGGAAATTTATATTGTAACAGATGTGTCTTCGTTCCCGTCTTTCTCTTGTTCTTTGTCAAATTTCAAACTTCTTTATCTTATGAAAGGAAAACTAAATTTGCATTCTCTATTTTATCTGATAACCACCATAGGATGTCATATAGGAAGAAGGTTCTCAAGGAGGGAAAGCTAATTACCATTACCAGTTTTTTTAAAAAAGGGAAGAAAAAGGCAAACTAAACTGACATAAAATGGACAAAAATTCAATTGATTACTTCTGAAAACTGTCATCTTCTGCCCCAAAGTTAACATACATACAGTGTTGGATTGAAATACTTGACAAAAAATAATACTCAAGTGCATTATTGAAGAAGCTCTGCACCAAGTAGATTGGAGTACCATTTCCTCCAGGACTCTGGTCAGTGGCAAGAGCACAGTTGATTAGGTGATGAGTTTGAACCATGCCACAAACAAATCCTTGTATTTAAGTGGAGAAGGGTAGAGGGCGGGCTCATTGTACACGGAGTTTCAACCATGCATCATTAACACTATGGATTTCTCGGTTATGAAAATGGAAGGTAGATTGGAGTACCATAGTGAGCAAGAAGAATGTGTGCTTAAAGATATTCGATTTCTAGTGGTTTTCTATTTGTCTTTGTAAATCTTTACCCAACAGCTTATAATCACTTTATGCTATTGGTGCAGTTTGGAGTATGTAGATGATCCTATAGTTGTTAGAGATATCCTAGGTCCTTTGTAAGATGAAGTAGGATCTAGTTTAGTTTTTGTTTTAACTACACACAACTGTATGTAGCTCCATGGTGTAAATTTGGGACCCCAGCCTTTAGTGCTGAAGATTAATACACAAAACTGTTACCTTTGTCCAAAAAAAAACACACACACTGTATTCTAATTGCACCAAATAATAATTAGTACAAGTGTGCAAACAGATTCACTGCGAATGTGCGATTCAGGGCTAAACAATTTTTGGCAGTGAATCAAAATCGGTTCGTAATGCAACCTCCACACGTGAAGCTATTCAAGAGGAAAGCCCTGCACCTCAATTTCTTGTCCATGGCTCATAGTTAGACTGAGATGAAGGCCCTCTCTGTGAGTCTGTTATTCATGTTGTAGTTCAAATGATTGACAACAGAGGAGTTTGATAGGATTCTCTTCTTTTCTCGAGGGTTATTGGCATAGGACAGAATAAAAAGTAACAACTTGCAGGTGTTTCTGAAACATCGAGTAGGTTCTCTTTTTTTTTTTATGGGGGCATGGGGGTGGGGGAGTGTGAAGGTGGGTACAACAACAACATACCCAATGTAATCCCGCAAGTGAGATTCGAGATGGTTAGACTGTACGCAGACCTACACCTACCTTTTGGAGGTAGTGAGTATAAAAGTGAGTGACTACATAAAATACATAGATGGATAGCAGCTTTCCGTTGGATAATCTAATTAACTGTAAGAGATATTTAACTCCATTTTCAATTGCTTCTGCTAGTACCTCTAGTTGAGCAGGTTCTTCCCGTTTTAGAGGAAGTGAATTGTTGTAATTAATGATGGTTGTTACGAAAAAAGTTGTATGAATAATATAATTATTGTTGCAGAAGATAGCACAGTTCTTACAGAATGGAGGTTAATTTTAGCTTCTCTGATATTAGACTTATTTACATTATTTTATGGAAAGTGGACCTCTGGAATCATCTACTCATGAGTATCTTGACTTGGTTGTTTTTTGGTTAGAGAGCTGGAATGACTGTCCAGGCAGAAAAGTTAAATTTCCTCCGTTTTCTTTCACATTTTCGAGCGGTTCATCGAGGTGCCTCATTTGCTG</genome_strand>
        <mrna_strand>AAAGAGCAAAAATTATCCTGGATGAAGTTCAGGCCCTATCTCTTTTCACCCGAGCACAGTGCCTGCGACATATTG....................................................................................GGGAGCATTTCCAACCTGTTGTGATTGGAATGCAAAATGATAGTTACAAAACT.............................................................................................................GTTGCCGATGCTGTGCTTAGAGACTACATGTTTGTCCATCTGGATAACAATCATGATAAATTTAATCTACTTAT...........................................................................................................CTTTATGTTGCAGAAGCTTTTCTCTCTGATAGATCAGACTTCTGTCCTAGACAATCCAGACTCTCTGCAAAATCAAGAAGTTTTGCTGCCGGGTCACTTAATTACCATATATCTGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGCTACAAGATTGGCTGCTTAAATTACAACGGTCACTTCAGGAAGAAACTGATGGTGAAAAAAAGAAGTTTGAGCTAAGTAGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGACGTCAAGAAGGCTATTGAAAAAAATGCTCCCAAACAGATTGGCTTGGCTATTGAGAGCATGTTGAAGACTGGGAGATTGGCTACACAATCAGGTCTTGATTTGCAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCTGGAATGACTGTCCAGGCAGAAAAGTTAAATTTCCTTCGTTTTCTTTCACATTTTCGAGCGGTTCATCGAGGTGCCTCATTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E428698" ref_strand="+" ref_description="SGN-E428698 [STM-50-D24]">
      <seq>aaagagcaaaaattatcctggatgaagttcaggccctatctcttttcacccgagcacagtgcctgcgacatattggggagcatttccaacctgttgtgattggaatgcaaaatgatagttacaaaactgttgccgatgctgtgcttagagactacatgtttgtccatctggataacaatcatgataaatttaatctacttatctttatgttgcagaagcttttctctctgatagatcagacttctgtcctagacaatccagactctctgcaaaatcaagaagttttgctgccgggtcacttaattaccatatatctgaaggaaaagctacaagattggctgcttaaattacaacggtcacttcaggaagaaactgatggtgaaaaaaagaagtttgagctaagtagcttgacagacgtcaagaaggctattgaaaaaaatgctcccaaacagattggcttggctattgagagcatgttgaagactgggagattggctacacaatcaggtcttgatttgcagcagagagctggaatgactgtccaggcagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="134867" stop="128155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134567" g_stop="134493" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134492" i_stop="134409" i_length="84">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134408" g_stop="134356" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="128" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134355" i_stop="134247" i_length="109">
            <donor d_prob="0.810" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134246" g_stop="134173" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="202" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="134172" i_stop="134066" i_length="107">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.889" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134065" g_stop="133948" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="320" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="133947" i_stop="131213" i_length="2735">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="131212" g_stop="131125" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="408" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="131124" i_stop="130442" i_length="683">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="130441" g_stop="130326" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="524" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="130325" i_stop="128483" i_length="1843">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="128482" g_stop="128455" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="552" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E428698" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134567" e_stop="134493"/>
          <exon e_start="134408" e_stop="134356"/>
          <exon e_start="134246" e_stop="134173"/>
          <exon e_start="134065" e_stop="133948"/>
          <exon e_start="131212" e_stop="131125"/>
          <exon e_start="130441" e_stop="130326"/>
          <exon e_start="128482" e_stop="128455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGCAAAAATTATCCTGGATGAAGTTCAGGCCCTATCTCTTTTTACCCGAGCACAGTGCCTGCGACATATTGGTACTTGTTTTATTTACTATCATGGTTAACTGTGATCTTATCAAATGACTGTCAACTGCATATGATCAATCTTCCACTTTTCAGGGGAGCATTTCCAACCTGTTGTGATCGGAATGCAAAATGATAGTTACAAAACTGTAAGTGTTATCTTGGTTGTACTTGTCATGATTTAGTTCTAGAAGTCAGAACAGACATATTTTTCTAGAGATGATACCTTTACATCACATTCTCTCTCTCACTTGACAGGTTGCTGATGCTGTGCTTAGAGACTACATATTTGTCCATCTGGATAACAATCATGATAAATTTAATCTACTTATGTTAGTATTTTTTTCTCTGGAAAATTGTCTTGTGATTTTATGGTAACTCTTCCATCTACAGTTGTATGTTTTGGCTATTGATATATTGATACTCCTGCTTTATTTAGCTTTATGTTGCAGAAGCTTTTCTCTCTGATAGATCAGACATCTGTCCTAGACAATCCAGACTCTCTGCAAAATCAAGAAGTTTTGCTGCCGGGTCACTTAATTACCATATATCTGAAGGTCCAAACTTTTAAATTTCCTTTTTAAGGAATAATTGTTATGTGACATTGGATGTGATGCTTATATAGTAAGTGCCTCATAGAAATGTGTATTGTCATTCTTCTTTGGGCTAAAAGAACCTTATATCCAGGATCAATTAAGTGGAGAGTTAAGTGATTACTCAATCAATCAAATACACCTAGTTGGCTATTGCTTTATGAATCATCTGTATCAATCATGCTCTATTCAAGCCCATCACAGTCCAGTATTGAGTACGTTTTTTATGTGGAGTGTTAGGCATGCTCTAAGTGCTTTAGTTGTCTGTGACTTCTTATGGTTGCAGTACATGATATGAATGTATGAATGTTTTCTTTTGGTTTCACAAGGCAAAAAAGAACGGATGATGTTTTTAAGGACAATTGGCCACTCTCGACTGTATTGGGTCCTGTAGTAATCATTTGCACTTCGGTGTTACTTGGGAATATCAAAGAAATGGATGGGTACTTCTAACTTTTGAGCTCCTTGGAGCTATACAGTTAGACGTCACTTCCTTATTAAGTCTTACCTGATTAACAAAGTACTTTAAGGATCTTCTATTGCATTATTAATTAGCAAGAGACTTATTGGGAATATTCTATTCCTGTTTGGCTCATATTGGGTCATGCCTCTACTTACAAGACTGCATTACATCATGGTCTAGTTTGAAGATGGGAAAGAAGATACCGAATTCTGTTCACGAGTCCCAAATTTAATGCTTCTTGTATCTTATTTATAAAGAAGGGGATCTGAAAATTGGTACAGTTCATGAACTTCTTAAATTTCCACTTGATTTGTTTTTTGATCCTTTCACACTTTCTACGTTGATTTTTACTTTGCTTCTTCTTCCATTCCACTTTCTTGGTGCTTTTATTCCCACTATTCATTCGCTTTTAGCAGAAAAACATGAGGATTGATTGTTTCATTCGCTGGACATTCATGAAATCAGTTGCAGAAGCTTATGACTTGAAATGTCTTAACTTGTTCAAGTTCTTTTTACTTTTATATGCTCAAAAAGTAATATTATTTAATTATGAATATGATAATCTGATTGTGTATGTTAAATATATCTATAAAATAGTTTAATATAGTTGTCACCTTAATCTTTCAATATGTTGTTTTTTGAATTTGAGTTGTGATATATACCATGTAGTAGCTGACAGTTTCTGATAAATCTAGTTGATTTTATGTTATAATTCGTAAAGCGAGGAAGAAAGTGCTTATTAAGCAGAATCACAGAGAGGCTACCTCGAACAGAATAATACATTATTTTTCAATAGACGAAGGGCCTCTTTATCGAGTATTCCTACATATTGCATGTTCCTATTCAATTCACTTACCATTGTTATAATGGAAGTTGGAAAGGTTGTAAAAAAGCTTTCTTTGGCATGCGATGGACTGGGCAAAGAAATTCCACCCTGTTCATTGGCAAACTGGGACAACTCGTAAACAGTGTGGAGGGCTTGGGGTTAAAAACGTGAAGTTTTAAATTTACGTTATGACTGTGTGGAGATTTGGAGTGGAAGGAGAAGCTTTGTGGAGAGGGTTGATGGTGTACAAATTTAGAGTAATGGAGGGGGATGGAGGACCGATGTGATTACTATGCCTTTCGGCTATGGTGTGTTGAGAATAGAGTTAGTTTTGGGGGCTAAAATGGTCAAGGATGAGTTCCTGGTATTGTCTAGAGCTTCTTGCCAATGGGAATTGTCTGTTCAGCAAGCTAGGCGACACGAGGGGATGAAACTTTTTGGGATCGTTCATCAGCAATTTCCAGGATTGGGAGGTGATCGAGCTTTAGCGATTTCTTGCTTTACTTCACATACAATGCCAATCAATTGACAGACTCGATGCTTTAAGTTGGGAAATAACAGAGTGTTCTATGTCAGTCCTTCTATGAGAAGCGTCTGATTAGGGCAGAGGATAGTTTCCCATATCAATCAGTCTTGATATCTAAAGTGCCGAGGAAGGTGTGCTTCTTCACGTGGAATAGAGGGGCGATACTTACAGCGAAGACTCTTAGGGAGTGAGAAAGGCTGATTGCCAAAGCTGGTGTATCTTGTGTAAGGAGGTAGGTGATGACATGGATCATATGCTATTGCACTACCAAATAGCCACGAGGTTATGGTGGGATATATTTAGTTGGTTTGGAGTTTCTTGGACTATGCCAAAATCCATGTTGGAGTTAATGTTTAGATGGAAGAGTGGAACTAGGAGAAGAGCCACAAAGCTTGGCATGTTACTACTCTTGCTTCTTTTAATTTTAGATCATTTGGAAAGAGAAAGTATGTGAGCTTTTGAAGGGGTGGAGATGAGCTTTGATTAATTGAGGAGTAGTCTCCTATATTTTTTTTTGTTGCACCTATATAGTTCCTGTTTGCATAGAGAATTGAGTGTCTTCGGGAGAGAACCACATTTGTAGATCTCTCCTTTTTGGTGTACCTCTTGTATACAGCCATATGACCTTGTTATTGTTGTTGAAATCTTTTACTTGGATTTAAAATAAAATAAAATATATCAAGCGACCTTCTAATTCTGTTATCAAACACATCTAATGTCTTTCTCACCTGATATATTCAATTTTATATGTTTAGTTTTGTTATCAAGCAGCCTTTACAGCTCTACACCATTAATGAATTAGAAGGCCTGTTTTATCCATATGAGATTGCTATCTGCTTGGTTTTTGCACTGTTTTGTCTTGACGTTCTCTATCACCTCACCAGGAAAAGCTACAAGATTGGCTACTTAAATTACAACGGTCACTTCAAGAAGAAACTGATGGTGAAAAAAAGAAGTTTGAGCTAAGTAGCTGTATGTTCTATCAACCTATTTCATCTATCTTAGTCTGTACTACTTTCATAGATAGCTGTTCGTGGCTATGCTACGCCATTGTATGGTGTGGGCGCCACCCACAACATTTGACTGGTTGTGGTCGCACTAGTAAGAAGTAATTAATGTTCTGTTCCAAACCAATTTGTTTCTGGTAGTGAGATTTTCAGTTACCCTCGTCACGTTTTAATTTATCTCTCAGGAAATCTTCCTTTGTCCTATACTGTTTGCTAGTTAGAGTCACAGGGGCATAAGAGATCTACTTAGAGCCTGTTTGGATTGACTTTCGACTTGTAAGCCACAAGTAAGCCAGAAGTCATAAGTTAGAAATTCTAACTTATGGTTTTTGTCTTATTTTAATCATTTTAGCTTAAACTGTAAGCACTTCTTTACCCAAACACTCCAAAAGTGCTTAAAATTTATTTTGGCTTAAAAACACTTAAAATAAGTCAATCCAAGCAGGCTCTATGAAGCTCCAAGTTTACATGCTTTTCTGTTAGTTTAATGGTGCTGATAGATGTACTAAAGTTCAGAAGATTTGGGCTTTCACTTTCTTTTTCTTTTAATCAACTCAGTTTTTACATAGATCAAATCCGGGCATATTGGATTCTAGAACTTGATTCAAATTTTGAGTAGACTTCATCTGTTTTTATGACATATTGCAGTGACAGACGTCAAGAAGGCTATTGAAAAAAATGCTCCCAAACAGATTGGCTTGACTATTGAGAGCATGTTGAAGACTGGGAGATTGGCTACACAATCAGGTCTTGATTTGCAGCAGGTATTTAGTTGTCAAGCTTTTATGCGAAGCACCACTGACTCTTTTTTTTTTTTTGGACAAGGTAACAGGCAAGCACCGATAACTCTTTATTGAAAAACAACTGTGAATCCCAGTAACTAGGAAATTTATATTGTAACAGATGTGTCTTCGTTCCCGTCTTTCTCTTGTTCTTTGTCAAATTTCAAACTTCTTTATCTTATGAAAGGAAAACTAAATTTGCATTCTCTATTTTATCTGATAACCACCATAGGATGTCATATAGGAAGAAGGTTCTCAAGGAGGGAAAGCTAATTACCATTACCAGTTTTTTTAAAAAAGGGAAGAAAAAGGCAAACTAAACTGACATAAAATGGACAAAAATTCAATTGATTACTTCTGAAAACTGTCATCTTCTGCCCCAAAGTTAACATACATACAGTGTTGGATTGAAATACTTGACAAAAAATAATACTCAAGTGCATTATTGAAGAAGCTCTGCACCAAGTAGATTGGAGTACCATTTCCTCCAGGACTCTGGTCAGTGGCAAGAGCACAGTTGATTAGGTGATGAGTTTGAACCATGCCACAAACAAATCCTTGTATTTAAGTGGAGAAGGGTAGAGGGCGGGCTCATTGTACACGGAGTTTCAACCATGCATCATTAACACTATGGATTTCTCGGTTATGAAAATGGAAGGTAGATTGGAGTACCATAGTGAGCAAGAAGAATGTGTGCTTAAAGATATTCGATTTCTAGTGGTTTTCTATTTGTCTTTGTAAATCTTTACCCAACAGCTTATAATCACTTTATGCTATTGGTGCAGTTTGGAGTATGTAGATGATCCTATAGTTGTTAGAGATATCCTAGGTCCTTTGTAAGATGAAGTAGGATCTAGTTTAGTTTTTGTTTTAACTACACACAACTGTATGTAGCTCCATGGTGTAAATTTGGGACCCCAGCCTTTAGTGCTGAAGATTAATACACAAAACTGTTACCTTTGTCCAAAAAAAAACACACACACTGTATTCTAATTGCACCAAATAATAATTAGTACAAGTGTGCAAACAGATTCACTGCGAATGTGCGATTCAGGGCTAAACAATTTTTGGCAGTGAATCAAAATCGGTTCGTAATGCAACCTCCACACGTGAAGCTATTCAAGAGGAAAGCCCTGCACCTCAATTTCTTGTCCATGGCTCATAGTTAGACTGAGATGAAGGCCCTCTCTGTGAGTCTGTTATTCATGTTGTAGTTCAAATGATTGACAACAGAGGAGTTTGATAGGATTCTCTTCTTTTCTCGAGGGTTATTGGCATAGGACAGAATAAAAAGTAACAACTTGCAGGTGTTTCTGAAACATCGAGTAGGTTCTCTTTTTTTTTTTATGGGGGCATGGGGGTGGGGGAGTGTGAAGGTGGGTACAACAACAACATACCCAATGTAATCCCGCAAGTGAGATTCGAGATGGTTAGACTGTACGCAGACCTACACCTACCTTTTGGAGGTAGTGAGTATAAAAGTGAGTGACTACATAAAATACATAGATGGATAGCAGCTTTCCGTTGGATAATCTAATTAACTGTAAGAGATATTTAACTCCATTTTCAATTGCTTCTGCTAGTACCTCTAGTTGAGCAGGTTCTTCCCGTTTTAGAGGAAGTGAATTGTTGTAATTAATGATGGTTGTTACGAAAAAAGTTGTATGAATAATATAATTATTGTTGCAGAAGATAGCACAGTTCTTACAGAATGGAGGTTAATTTTAGCTTCTCTGATATTAGACTTATTTACATTATTTTATGGAAAGTGGACCTCTGGAATCATCTACTCATGAGTATCTTGACTTGGTTGTTTTTTGGTTAGAGAGCTGGAATGACTGTCCAGGCAGAAA</genome_strand>
        <mrna_strand>AAAGAGCAAAAATTATCCTGGATGAAGTTCAGGCCCTATCTCTTTTCACCCGAGCACAGTGCCTGCGACATATTG....................................................................................GGGAGCATTTCCAACCTGTTGTGATTGGAATGCAAAATGATAGTTACAAAACT.............................................................................................................GTTGCCGATGCTGTGCTTAGAGACTACATGTTTGTCCATCTGGATAACAATCATGATAAATTTAATCTACTTAT...........................................................................................................CTTTATGTTGCAGAAGCTTTTCTCTCTGATAGATCAGACTTCTGTCCTAGACAATCCAGACTCTCTGCAAAATCAAGAAGTTTTGCTGCCGGGTCACTTAATTACCATATATCTGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGCTACAAGATTGGCTGCTTAAATTACAACGGTCACTTCAGGAAGAAACTGATGGTGAAAAAAAGAAGTTTGAGCTAAGTAGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGACGTCAAGAAGGCTATTGAAAAAAATGCTCCCAAACAGATTGGCTTGGCTATTGAGAGCATGTTGAAGACTGGGAGATTGGCTACACAATCAGGTCTTGATTTGCAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCTGGAATGACTGTCCAGGCAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315539" ref_strand="+" ref_description="SGN-E315539 [cTOA-22-G19]">
      <seq>gaagatcaatctgcagtctcacttaaattgtattatctaaacaatggaagtgcaagacttggattctggatacaaggaagggaatacttgcttcctgttggtatcatcttaaaggcccttgttgacaccactgatcacgagatatacgtcaatttaacatgttgctacaatgaggaatgtgaccgtgtaaagggatctgtcggcacccagcttgttggtgaaagagcaaaaattatcctggatgaagttcaggccctatctctttttacccgagcacagtgcctgcgacatattggggagcatttccaacctgttgtgatcggaatgcaaaatgatagttacaaaactgttgctgatgctgtgcttagagactacatatttgtccatctggataacaatcatgataaatttaatctacttatctttatgttgcagaagcttttctctctgatagatcagacatctgtcctagacaatccagactctctgcaaaatcaagaagttttgctgccgggtcacttaattaccatatatctgaaggaaaagctacaagattggctacttaaattacaacggtcacttcaagaagaaactgatggtgaaaaaaagaagtttgagctaagtagcttgacagacgtcaagaaggctattgaaaaaaatgctcccaaacagattggcttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323C14-YMGoL/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0323C14.1" temp_strand="-" temp_description="C11HBa0323C14.1  AC220060.1 htgs_phase:3 submitted_to_sgn_as:gi|170933590|gb|AC220060.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0323C14, complete sequence">
        <position start="136799" stop="130087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136499" g_stop="136432" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136431" i_stop="136353" i_length="79">
            <donor d_prob="0.605" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136352" g_stop="136307" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="114" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136306" i_stop="134674" i_length="1633">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134673" g_stop="134493" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="295" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="134492" i_stop="134409" i_length="84">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134408" g_stop="134356" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="348" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134355" i_stop="134247" i_length="109">
            <donor d_prob="0.810" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="134246" g_stop="134173" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="422" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="134172" i_stop="134066" i_length="107">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="134065" g_stop="133948" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="540" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="133947" i_stop="131213" i_length="2735">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="131212" g_stop="131125" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="628" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="131124" i_stop="130442" i_length="683">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="130441" g_stop="130387" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="683" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323C14.1" gen_strand="-" ref_id="SGN-E315539" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323C14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136499" e_stop="136432"/>
          <exon e_start="136352" e_stop="136307"/>
          <exon e_start="134673" e_stop="134493"/>
          <exon e_start="134408" e_stop="134356"/>
          <exon e_start="134246" e_stop="134173"/>
          <exon e_start="134065" e_stop="133948"/>
          <exon e_start="131212" e_stop="131125"/>
          <exon e_start="130441" e_stop="130387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATCAATCTGCAGTCTCACTTAAATTGTATTATCTAAACAATGGAAGTGCAAGACTTGGATTCTGGTGAGGAACTAAAACTTAGCATGATTGAATTGTCTTCTTGTATGATGTCTGAGACATGCTTCTTGCTATCTGCTTGCAGGATACAAGGAAGGGAATACTTGCTTCCTGTTGGTATCATCTTAAAGGTAATCTGGCATTCTCTAGTCTTGTTAGATTGTCTTCGAGAGACTAGAATGTTTTGATTTATTGCAATATGTGAAACTTGCAATCAAATTTTACATTAAAAAGCTAAGAATTACATTTATAACTATTCTTTCAAGTAATGGAGAAGTATCTAGTAATCTTGAATTTCTGTTCATGGCAATTTGCCGAGTATGATATGGCATTGTGGTGATCTTGTTCGAGATAAACTGGCTGGCATAGGAAATACAAACAAGGCTCTGCCAGTTGGGGATTCTCTTTTTACATTTCTCCAGGACCCCATTCATATGCCTTTGGATTTGCTTTTAGCTCCCAAAGGCATGCCTAGATAAGTAGTTGGAAGGTCCCCAACCTTTCCACCTAGTTTGCTGGCCAAGCTTTCTAACAAGCACATTGTTGATGAGATAGATGAGGCTTTTCCCCCACTTTATGTGGAAATCAGGGATGGCTTCAAAAATGACAAAAATAATCCTCAGTTTCGGGGTTTGTTCTGCCTATGCTTCGCAGAACACCAATGTATCATCTTCATATTGCAGATGAGTTATCTCCATATTACATAATTCTCCTGCTTGTGGAACCCTTTGATCCACCCTCTTTCCCTTGCTGTATTAATTAGGTTGTTCATCCCTTCCTTTGCTAAGATGAACAAAAGGGGGGAGAGAGGGTCCCCTTGCCTCGGGCCTCTCTGAGAAAAGAAGAATCCAATAGTTTCTCTATTGACAAGTATAGAGAACTTAATAGAGCCAATACAGTGCTTCATCCATCTATCCGCAGAACCCGTTCTTTCCGGAATCTGGGTAAGAAAGTCATAAGCTTTCTGTACATATCCAACTTGCATGTGATTCCTCGCTTTTAGTTCCTCTATTTGGCCTCTATGCATTAATTGGCTATCAAAACAACATCCATGATCCGCCTTCCCTTGATAAATTCCATCTGCTGTCTATTCACTAGGCTATGTATCACCCTCTTGAGTTTTCTGCTAGAAGCTTTGCACTGATCTTGTACACCCTCAATATGGCTAATGGGTTTGAAGTCTTTTAATTCCTCAGCACCGACCTTCTTTGGGATCAAAGCTACAAAGGTTGCATTCAGACACTTATCGAAGTATCTTCATGGAAGTTCTGAATTGCTTCAACTAAGTCGCAGGTGATGATATCCTAACTTTGTTTGGGGTCTCCACACCTGTGTTTCCACAATAGGTTCTCATAAAGACCACTATTTCCTTTCTGATCTCTTCTGGATCCTACTTTATTACCTCCCCTACTTTCAGCCTGTCTATTGTGTTAGCTCTCCTATGTGCATTTGCAGTTCTGTGGATATAAAGAATCATGCATAGTATTGGAAGCGCGTTCGTTTTGAGATGGGAACAAATCAGGTTTGCCGAACCAGAGTTTTCTCGGGTAAAGAGAAGTAATTAAATATAGATTGAGGATAAGAAAAACAGTATTAAAAGATTTCTTACTGCATTTTATCTGTCCCCCGGGTTGATCTTGCTGCATCGCATGTAGTTTTAACACAAGTTTTTCCTTCGAAATCCACATTTGTTTGCATAATAATTTGATCCAGCTATGCTTGTTCATTCTGCTAGATTTCTTACTGCATTTTATCTTTCCCCAGGCCCTTGTTGACACCACTGATCACGAGATATACGTCAATTTAACATGTTGCTACAATGAGGAATGTGACCGTGTAAAGGGATCTGTCGGCACCCAGCTTGTTGGTGAAAGAGCAAAAATTATCCTGGATGAAGTTCAGGCCCTATCTCTTTTTACCCGAGCACAGTGCCTGCGACATATTGGTACTTGTTTTATTTACTATCATGGTTAACTGTGATCTTATCAAATGACTGTCAACTGCATATGATCAATCTTCCACTTTTCAGGGGAGCATTTCCAACCTGTTGTGATCGGAATGCAAAATGATAGTTACAAAACTGTAAGTGTTATCTTGGTTGTACTTGTCATGATTTAGTTCTAGAAGTCAGAACAGACATATTTTTCTAGAGATGATACCTTTACATCACATTCTCTCTCTCACTTGACAGGTTGCTGATGCTGTGCTTAGAGACTACATATTTGTCCATCTGGATAACAATCATGATAAATTTAATCTACTTATGTTAGTATTTTTTTCTCTGGAAAATTGTCTTGTGATTTTATGGTAACTCTTCCATCTACAGTTGTATGTTTTGGCTATTGATATATTGATACTCCTGCTTTATTTAGCTTTATGTTGCAGAAGCTTTTCTCTCTGATAGATCAGACATCTGTCCTAGACAATCCAGACTCTCTGCAAAATCAAGAAGTTTTGCTGCCGGGTCACTTAATTACCATATATCTGAAGGTCCAAACTTTTAAATTTCCTTTTTAAGGAATAATTGTTATGTGACATTGGATGTGATGCTTATATAGTAAGTGCCTCATAGAAATGTGTATTGTCATTCTTCTTTGGGCTAAAAGAACCTTATATCCAGGATCAATTAAGTGGAGAGTTAAGTGATTACTCAATCAATCAAATACACCTAGTTGGCTATTGCTTTATGAATCATCTGTATCAATCATGCTCTATTCAAGCCCATCACAGTCCAGTATTGAGTACGTTTTTTATGTGGAGTGTTAGGCATGCTCTAAGTGCTTTAGTTGTCTGTGACTTCTTATGGTTGCAGTACATGATATGAATGTATGAATGTTTTCTTTTGGTTTCACAAGGCAAAAAAGAACGGATGATGTTTTTAAGGACAATTGGCCACTCTCGACTGTATTGGGTCCTGTAGTAATCATTTGCACTTCGGTGTTACTTGGGAATATCAAAGAAATGGATGGGTACTTCTAACTTTTGAGCTCCTTGGAGCTATACAGTTAGACGTCACTTCCTTATTAAGTCTTACCTGATTAACAAAGTACTTTAAGGATCTTCTATTGCATTATTAATTAGCAAGAGACTTATTGGGAATATTCTATTCCTGTTTGGCTCATATTGGGTCATGCCTCTACTTACAAGACTGCATTACATCATGGTCTAGTTTGAAGATGGGAAAGAAGATACCGAATTCTGTTCACGAGTCCCAAATTTAATGCTTCTTGTATCTTATTTATAAAGAAGGGGATCTGAAAATTGGTACAGTTCATGAACTTCTTAAATTTCCACTTGATTTGTTTTTTGATCCTTTCACACTTTCTACGTTGATTTTTACTTTGCTTCTTCTTCCATTCCACTTTCTTGGTGCTTTTATTCCCACTATTCATTCGCTTTTAGCAGAAAAACATGAGGATTGATTGTTTCATTCGCTGGACATTCATGAAATCAGTTGCAGAAGCTTATGACTTGAAATGTCTTAACTTGTTCAAGTTCTTTTTACTTTTATATGCTCAAAAAGTAATATTATTTAATTATGAATATGATAATCTGATTGTGTATGTTAAATATATCTATAAAATAGTTTAATATAGTTGTCACCTTAATCTTTCAATATGTTGTTTTTTGAATTTGAGTTGTGATATATACCATGTAGTAGCTGACAGTTTCTGATAAATCTAGTTGATTTTATGTTATAATTCGTAAAGCGAGGAAGAAAGTGCTTATTAAGCAGAATCACAGAGAGGCTACCTCGAACAGAATAATACATTATTTTTCAATAGACGAAGGGCCTCTTTATCGAGTATTCCTACATATTGCATGTTCCTATTCAATTCACTTACCATTGTTATAATGGAAGTTGGAAAGGTTGTAAAAAAGCTTTCTTTGGCATGCGATGGACTGGGCAAAGAAATTCCACCCTGTTCATTGGCAAACTGGGACAACTCGTAAACAGTGTGGAGGGCTTGGGGTTAAAAACGTGAAGTTTTAAATTTACGTTATGACTGTGTGGAGATTTGGAGTGGAAGGAGAAGCTTTGTGGAGAGGGTTGATGGTGTACAAATTTAGAGTAATGGAGGGGGATGGAGGACCGATGTGATTACTATGCCTTTCGGCTATGGTGTGTTGAGAATAGAGTTAGTTTTGGGGGCTAAAATGGTCAAGGATGAGTTCCTGGTATTGTCTAGAGCTTCTTGCCAATGGGAATTGTCTGTTCAGCAAGCTAGGCGACACGAGGGGATGAAACTTTTTGGGATCGTTCATCAGCAATTTCCAGGATTGGGAGGTGATCGAGCTTTAGCGATTTCTTGCTTTACTTCACATACAATGCCAATCAATTGACAGACTCGATGCTTTAAGTTGGGAAATAACAGAGTGTTCTATGTCAGTCCTTCTATGAGAAGCGTCTGATTAGGGCAGAGGATAGTTTCCCATATCAATCAGTCTTGATATCTAAAGTGCCGAGGAAGGTGTGCTTCTTCACGTGGAATAGAGGGGCGATACTTACAGCGAAGACTCTTAGGGAGTGAGAAAGGCTGATTGCCAAAGCTGGTGTATCTTGTGTAAGGAGGTAGGTGATGACATGGATCATATGCTATTGCACTACCAAATAGCCACGAGGTTATGGTGGGATATATTTAGTTGGTTTGGAGTTTCTTGGACTATGCCAAAATCCATGTTGGAGTTAATGTTTAGATGGAAGAGTGGAACTAGGAGAAGAGCCACAAAGCTTGGCATGTTACTACTCTTGCTTCTTTTAATTTTAGATCATTTGGAAAGAGAAAGTATGTGAGCTTTTGAAGGGGTGGAGATGAGCTTTGATTAATTGAGGAGTAGTCTCCTATATTTTTTTTTGTTGCACCTATATAGTTCCTGTTTGCATAGAGAATTGAGTGTCTTCGGGAGAGAACCACATTTGTAGATCTCTCCTTTTTGGTGTACCTCTTGTATACAGCCATATGACCTTGTTATTGTTGTTGAAATCTTTTACTTGGATTTAAAATAAAATAAAATATATCAAGCGACCTTCTAATTCTGTTATCAAACACATCTAATGTCTTTCTCACCTGATATATTCAATTTTATATGTTTAGTTTTGTTATCAAGCAGCCTTTACAGCTCTACACCATTAATGAATTAGAAGGCCTGTTTTATCCATATGAGATTGCTATCTGCTTGGTTTTTGCACTGTTTTGTCTTGACGTTCTCTATCACCTCACCAGGAAAAGCTACAAGATTGGCTACTTAAATTACAACGGTCACTTCAAGAAGAAACTGATGGTGAAAAAAAGAAGTTTGAGCTAAGTAGCTGTATGTTCTATCAACCTATTTCATCTATCTTAGTCTGTACTACTTTCATAGATAGCTGTTCGTGGCTATGCTACGCCATTGTATGGTGTGGGCGCCACCCACAACATTTGACTGGTTGTGGTCGCACTAGTAAGAAGTAATTAATGTTCTGTTCCAAACCAATTTGTTTCTGGTAGTGAGATTTTCAGTTACCCTCGTCACGTTTTAATTTATCTCTCAGGAAATCTTCCTTTGTCCTATACTGTTTGCTAGTTAGAGTCACAGGGGCATAAGAGATCTACTTAGAGCCTGTTTGGATTGACTTTCGACTTGTAAGCCACAAGTAAGCCAGAAGTCATAAGTTAGAAATTCTAACTTATGGTTTTTGTCTTATTTTAATCATTTTAGCTTAAACTGTAAGCACTTCTTTACCCAAACACTCCAAAAGTGCTTAAAATTTATTTTGGCTTAAAAACACTTAAAATAAGTCAATCCAAGCAGGCTCTATGAAGCTCCAAGTTTACATGCTTTTCTGTTAGTTTAATGGTGCTGATAGATGTACTAAAGTTCAGAAGATTTGGGCTTTCACTTTCTTTTTCTTTTAATCAACTCAGTTTTTACATAGATCAAATCCGGGCATATTGGATTCTAGAACTTGATTCAAATTTTGAGTAGACTTCATCTGTTTTTATGACATATTGCAGTGACAGACGTCAAGAAGGCTATTGAAAAAAATGCTCCCAAACAGATTGGCTTGAC</genome_strand>
        <mrna_strand>GAAGATCAATCTGCAGTCTCACTTAAATTGTATTATCTAAACAATGGAAGTGCAAGACTTGGATTCTG...............................................................................GATACAAGGAAGGGAATACTTGCTTCCTGTTGGTATCATCTTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTGTTGACACCACTGATCACGAGATATACGTCAATTTAACATGTTGCTACAATGAGGAATGTGACCGTGTAAAGGGATCTGTCGGCACCCAGCTTGTTGGTGAAAGAGCAAAAATTATCCTGGATGAAGTTCAGGCCCTATCTCTTTTTACCCGAGCACAGTGCCTGCGACATATTG....................................................................................GGGAGCATTTCCAACCTGTTGTGATCGGAATGCAAAATGATAGTTACAAAACT.............................................................................................................GTTGCTGATGCTGTGCTTAGAGACTACATATTTGTCCATCTGGATAACAATCATGATAAATTTAATCTACTTAT...........................................................................................................CTTTATGTTGCAGAAGCTTTTCTCTCTGATAGATCAGACATCTGTCCTAGACAATCCAGACTCTCTGCAAAATCAAGAAGTTTTGCTGCCGGGTCACTTAATTACCATATATCTGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGCTACAAGATTGGCTACTTAAATTACAACGGTCACTTCAAGAAGAAACTGATGGTGAAAAAAAGAAGTTTGAGCTAAGTAGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGACGTCAAGAAGGCTATTGAAAAAAATGCTCCCAAACAGATTGGCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>160</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1" PGL_stop="963"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1" e_stop="131"/>
            <exon e_start="258" e_stop="323"/>
            <exon e_start="421" e_stop="489"/>
            <exon e_start="596" e_stop="963"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="0.969"/>
          <exon-intron don_prob="0.992" acc_prob="0.818" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="1" e_stop="131" e_length="131"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="132" i_stop="257" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="258" e_stop="323" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.818">
            <gDNA_intron_boundary i_start="324" i_stop="420" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="421" e_stop="489" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.979">
            <gDNA_intron_boundary i_start="490" i_stop="595" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="596" e_stop="963" e_length="368"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="131"/>
              <exon start="258" stop="323"/>
              <exon start="421" stop="489"/>
              <exon start="596" stop="866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411935" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46" stop="131"/>
              <exon start="258" stop="323"/>
              <exon start="421" stop="489"/>
              <exon start="596" stop="955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395260" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52" stop="131"/>
              <exon start="258" stop="323"/>
              <exon start="421" stop="489"/>
              <exon start="596" stop="954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82" stop="131"/>
              <exon start="258" stop="323"/>
              <exon start="421" stop="489"/>
              <exon start="596" stop="950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572848" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124" stop="131"/>
              <exon start="258" stop="323"/>
              <exon start="421" stop="489"/>
              <exon start="596" stop="963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419202" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="264" stop="323"/>
              <exon start="421" stop="489"/>
              <exon start="596" stop="963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="295" stop="323"/>
              <exon start="421" stop="489"/>
              <exon start="596" stop="963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="438" stop="489"/>
              <exon start="596" stop="954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245081" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="482" stop="489"/>
              <exon start="596" stop="963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="618" stop="963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="631" stop="963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235040" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGCTTGCCTAAGACATCTTCTGAGATGGCTGCCATAGAGAAATACCTACAGTTCCAACAAGATTCAGTGCCTTGCAAAATACGTGCTAAACGAGGCTGTGCTACGCACCCACGAAGTATTGCAGAAAGG : ATGAGACGTACTCGGATTAGTGAAAGAATGAAAAAACTGCAAGATCTTTTCCCAAATATGGACAAG : CAAACAAACACAGCTGATATGTTAGATTTGGCAGTTGATTACATTAAAGACCTTCAGAAACAAGTCCAG : ACACTGACCGATAAAAAGGCGAAATGCTCGTGTACAAGTAAGCAGCTGCAATATTCAAATGGAACAACATGAAATAGTCTTGTGTACAGATAGTAATAGGTGAAGTTAGATGGAAAAGGAGAGTAAATAAACTCTCTTTCTACCCTAATATGCTGGAAATATGGTTCTACTTTGTTTTTATTTTGCAACAAGGCAAGTGTAGTTTTCAATGTATTATTGAGTTTGATTAGATCTAATAACAGTCTAGTGAGTACAATCTAGATGTATAGGAGCACATGATTATTGTATTATGCTGTTGTTTATTGGAATTTAACTATGTTATTAGTTGATTCAAAACTTTATAAGACAAATAATATCGATTGGAAAGA</gDNA_template>
            <first_frame> Q  A  C  L  R  H  L  L  R  W  L  P  *  R  N  T  Y  S  S  N  K  I  Q  C  L  A  K  Y  V  L  N  E  A  V  L  R  T  H  E  V  L  Q  K  G :   *  D  V  L  G  L  V  K  E  *  K  N  C  K  I  F  S  Q  I  W  T  S :   K  Q  T  Q  L  I  C  *  I  W  Q  L  I  T  L  K  T  F  R  N  K  S  R :   H  *  P  I  K  R  R  N  A  R  V  Q  V  S  S  C  N  I  Q  M  E  Q  H  E  I  V  L  C  T  D  S  N  R  *  S  *  M  E  K  E  S  K  *  T  L  F  L  P  *  Y  A  G  N  M  V  L  L  C  F  Y  F  A  T  R  Q  V  *  F  S  M  Y  Y  *  V  *  L  D  L  I  T  V  *  *  V  Q  S  R  C  I  G  A  H  D  Y  C  I  M  L  L  F  I  G  I  *  L  C  Y  *  L  I  Q  N  F  I  R  Q  I  I  S  I  G  K  </first_frame>
            <second_frame>  K  L  A  *  D  I  F  *  D  G  C  H  R  E  I  P  T  V  P  T  R  F  S  A  L  Q  N  T  C  *  T  R  L  C  Y  A  P  T  K  Y  C  R  K   : D  E  T  Y  S  D  *  *  K  N  E  K  T  A  R  S  F  P  K  Y  G  Q   : A  N  K  H  S  *  Y  V  R  F  G  S  *  L  H  *  R  P  S  E  T  S  P   : D  T  D  R  *  K  G  E  M  L  V  Y  K  *  A  A  A  I  F  K  W  N  N  M  K  *  S  C  V  Q  I  V  I  G  E  V  R  W  K  R  R  V  N  K  L  S  F  Y  P  N  M  L  E  I  W  F  Y  F  V  F  I  L  Q  Q  G  K  C  S  F  Q  C  I  I  E  F  D  *  I  *  *  Q  S  S  E  Y  N  L  D  V  *  E  H  M  I  I  V  L  C  C  C  L  L  E  F  N  Y  V  I  S  *  F  K  T  L  *  D  K  *  Y  R  L  E  R </second_frame>
            <third_frame>   S  L  P  K  T  S  S  E  M  A  A  I  E  K  Y  L  Q  F  Q  Q  D  S  V  P  C  K  I  R  A  K  R  G  C  A  T  H  P  R  S  I  A  E  R  :  M  R  R  T  R  I  S  E  R  M  K  K  L  Q  D  L  F  P  N  M  D  K  :  Q  T  N  T  A  D  M  L  D  L  A  V  D  Y  I  K  D  L  Q  K  Q  V  Q  :  T  L  T  D  K  K  A  K  C  S  C  T  S  K  Q  L  Q  Y  S  N  G  T  T  *  N  S  L  V  Y  R  *  *  *  V  K  L  D  G  K  G  E  *  I  N  S  L  S  T  L  I  C  W  K  Y  G  S  T  L  F  L  F  C  N  K  A  S  V  V  F  N  V  L  L  S  L  I  R  S  N  N  S  L  V  S  T  I  *  M  Y  R  S  T  *  L  L  Y  Y  A  V  V  Y  W  N  L  T  M  L  L  V  D  S  K  L  Y  K  T  N  N  I  D  W  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3" stop="131"/>
                    <exon start="258" stop="323"/>
                    <exon start="421" stop="489"/>
                    <exon start="596" stop="667"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLPKTSSEMAAIEKYLQFQQDSVPCKIRAKRGCATHPRSIAERMRRTRISERMKKLQDLFPNMDKQTNTADMLDLAVDYIKDLQKQVQTLTDKKAKCSCTSKQLQYSNGTT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="4146" PGL_stop="4657"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4146" e_stop="4657"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="4146" e_stop="4657" e_length="512"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4146" stop="4657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243101" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCAACAACAACACTTAGACAAATTACATATCCGCAATAACAAGCTCAATATTGATCAATCGCAAGTTCCGCAGAAAGGCAATCAGAAGATCAGCAAAATACGATACCAAGTTCACTAATGATAAGTATGTGCAATGCAATGGAAAGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACACGAACCTCGATAATAGTAACCATCGCGGCGCGCGATACGTCCCTTGAAATATAGTATCCATCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTCTTTCTCAATGCACATAACACTTGTCACAACCAATGCCTCAGCATAATGCAGATGAGAAGTTCACACAAGTAATGAGGAGATGACCATTTTCATAACATCGCACAGTTCACAACCACACAAACATGAAGTTACATCAACAATGA</gDNA_template>
            <first_frame> L  N  N  N  T  *  T  N  Y  I  S  A  I  T  S  S  I  L  I  N  R  K  F  R  R  K  A  I  R  R  S  A  K  Y  D  T  K  F  T  N  D  K  Y  V  Q  C  N  G  K  Q  C  Q  V  *  *  C  M  S  D  L  V  I  H  T  R  C  L  S  V  R  D  P  W  G  T  Y  L  S  M  H  L  S  R  R  T  T  R  T  S  I  I  V  T  I  A  A  R  D  T  S  L  E  I  *  Y  P  S  A  R  D  T  S  L  E  M  V  H  P  L  K  Y  P  F  F  L  N  A  H  N  T  C  H  N  Q  C  L  S  I  M  Q  M  R  S  S  H  K  *  *  G  D  D  H  F  H  N  I  A  Q  F  T  T  T  Q  T  *  S  Y  I  N  N   </first_frame>
            <second_frame>  S  T  T  T  L  R  Q  I  T  Y  P  Q  *  Q  A  Q  Y  *  S  I  A  S  S  A  E  R  Q  S  E  D  Q  Q  N  T  I  P  S  S  L  M  I  S  M  C  N  A  M  E  S  N  V  K  Y  N  D  A  C  L  T  *  *  Y  T  P  A  V  S  Q  S  G  T  H  G  G  H  I  C  P  C  I  C  R  G  A  R  H  E  P  R  *  *  *  P  S  R  R  A  I  R  P  L  K  Y  S  I  H  R  R  A  I  R  P  S  K  W  Y  I  L  L  S  T  H  S  F  S  M  H  I  T  L  V  T  T  N  A  S  A  *  C  R  *  E  V  H  T  S  N  E  E  M  T  I  F  I  T  S  H  S  S  Q  P  H  K  H  E  V  T  S  T  M  </second_frame>
            <third_frame>   Q  Q  Q  H  L  D  K  L  H  I  R  N  N  K  L  N  I  D  Q  S  Q  V  P  Q  K  G  N  Q  K  I  S  K  I  R  Y  Q  V  H  *  *  *  V  C  A  M  Q  W  K  A  M  S  S  I  M  M  H  V  *  P  S  D  T  H  P  L  S  L  S  P  G  P  M  G  D  I  S  V  H  A  S  V  A  A  H  D  T  N  L  D  N  S  N  H  R  G  A  R  Y  V  P  *  N  I  V  S  I  G  A  R  Y  V  P  R  N  G  T  S  S  *  V  P  I  L  S  Q  C  T  *  H  L  S  Q  P  M  P  Q  H  N  A  D  E  K  F  T  Q  V  M  R  R  *  P  F  S  *  H  R  T  V  H  N  H  T  N  M  K  L  H  Q  Q  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0323C14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="19317" PGL_stop="10666"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19317" e_stop="19107"/>
            <exon e_start="15472" e_stop="15351"/>
            <exon e_start="12270" e_stop="12152"/>
            <exon e_start="11100" e_stop="10666"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.405" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.982" e_score="0.992"/>
          <exon-intron don_prob="0.940" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19317" e_stop="19107" e_length="211"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.405">
            <gDNA_intron_boundary i_start="19106" i_stop="15473" i_length="3634"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="15472" e_stop="15351" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.982">
            <gDNA_intron_boundary i_start="15350" i_stop="12271" i_length="3080"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12270" e_stop="12152" e_length="119"/>
          </exon>
          <intron i_serial="3" don_prob="0.940" acc_prob="0.988">
            <gDNA_intron_boundary i_start="12151" i_stop="11101" i_length="1051"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="11100" e_stop="10666" e_length="435"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19317" stop="19107"/>
              <exon start="15472" stop="15351"/>
              <exon start="12270" stop="12152"/>
              <exon start="11100" stop="11072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12270" stop="12152"/>
              <exon start="11100" stop="10666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283587" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCACGCCCACCCAACCCCGATCCACCCCTGATCGGCGCCCATCCCACCCATTCCGACCGGCGCTGCATAGATCAGCAGCAGCAGGAGGTCGCGCCACCTTCCCCGACCGGAGCTCCGTGCGCCTCGATCAGCAGCAGCAGCAGCAGGAGGAGGAGGTCGCAGCATCACCGCAGAGGCGGCAGCAGCAACAGCAAATTCCGGCAGATTAG : TGATTTAGCTTCAGCCGGAAATTGATCTTCAATGTCAGGAGAAGTTCAGATGAGTTCAGAAAAGCAACCACGAAGAGGACTGTCATGCACCCGTTACTTCGATGCACTCTGGTTCTGCTACT : CTCCCGTCCATCAGATGCAGCAATATTATAGACTTGGTGCCCTTGATAATTGTAGTAAGAAATGGAGTGGTCTCGTTGATTGTCTGACTTTAAAAACCAAAAGGTCTTCTGAAGTGGAG : GAAATTTTAGAAACACGCGAGAAAGCGAAGCCTCACCTGTGGTCAACACGAACCCCTGAAGAAGCCGCAGCTTATTGGAGCGAACTCTTTGACCATCTAGATGAAGAGTAAAACTCTTAAGACCTTTTCATCAGACATTTGCTCAATCAATACGAGAAAGTTTATTATATCATTTGAAATAATCTTCTCCCCAATGATGCTTGTTTCAAACATGTCTTAGAGGCACCATGGTTATCAAAGTGGGTTTCTAAAGAGGCACCAGTTTAGGAATGTTTAGAATAGGAACATTGTGTAGGAAAATCTTCTTTTTCCTTGAGTGATTGAAGCAGCATAAACAAATTCCAACAATCTTAAACGTCAGAGTAACACCACCTTCTGATTCAGATGAACTGTGGAGCTTATCATTGCATTATAAAGAGATGGAACAAAACACTA</gDNA_template>
            <first_frame> S  H  A  H  P  T  P  I  H  P  *  S  A  P  I  P  P  I  P  T  G  A  A  *  I  S  S  S  R  R  S  R  H  L  P  R  P  E  L  R  A  P  R  S  A  A  A  A  A  G  G  G  G  R  S  I  T  A  E  A  A  A  A  T  A  N  S  G  R  L   : V  I  *  L  Q  P  E  I  D  L  Q  C  Q  E  K  F  R  *  V  Q  K  S  N  H  E  E  D  C  H  A  P  V  T  S  M  H  S  G  S  A  T  :  L  P  S  I  R  C  S  N  I  I  D  L  V  P  L  I  I  V  V  R  N  G  V  V  S  L  I  V  *  L  *  K  P  K  G  L  L  K  W  R :   K  F  *  K  H  A  R  K  R  S  L  T  C  G  Q  H  E  P  L  K  K  P  Q  L  I  G  A  N  S  L  T  I  *  M  K  S  K  T  L  K  T  F  S  S  D  I  C  S  I  N  T  R  K  F  I  I  S  F  E  I  I  F  S  P  M  M  L  V  S  N  M  S  *  R  H  H  G  Y  Q  S  G  F  L  K  R  H  Q  F  R  N  V  *  N  R  N  I  V  *  E  N  L  L  F  P  *  V  I  E  A  A  *  T  N  S  N  N  L  K  R  Q  S  N  T  T  F  *  F  R  *  T  V  E  L  I  I  A  L  *  R  D  G  T  K  H   </first_frame>
            <second_frame>  L  T  P  T  Q  P  R  S  T  P  D  R  R  P  S  H  P  F  R  P  A  L  H  R  S  A  A  A  G  G  R  A  T  F  P  D  R  S  S  V  R  L  D  Q  Q  Q  Q  Q  Q  E  E  E  V  A  A  S  P  Q  R  R  Q  Q  Q  Q  Q  I  P  A  D  *  :  *  F  S  F  S  R  K  L  I  F  N  V  R  R  S  S  D  E  F  R  K  A  T  T  K  R  T  V  M  H  P  L  L  R  C  T  L  V  L  L  L :   S  R  P  S  D  A  A  I  L  *  T  W  C  P  *  *  L  *  *  E  M  E  W  S  R  *  L  S  D  F  K  N  Q  K  V  F  *  S  G   : G  N  F  R  N  T  R  E  S  E  A  S  P  V  V  N  T  N  P  *  R  S  R  S  L  L  E  R  T  L  *  P  S  R  *  R  V  K  L  L  R  P  F  H  Q  T  F  A  Q  S  I  R  E  S  L  L  Y  H  L  K  *  S  S  P  Q  *  C  L  F  Q  T  C  L  R  G  T  M  V  I  K  V  G  F  *  R  G  T  S  L  G  M  F  R  I  G  T  L  C  R  K  I  F  F  F  L  E  *  L  K  Q  H  K  Q  I  P  T  I  L  N  V  R  V  T  P  P  S  D  S  D  E  L  W  S  L  S  L  H  Y  K  E  M  E  Q  N  T  </second_frame>
            <third_frame>   S  R  P  P  N  P  D  P  P  L  I  G  A  H  P  T  H  S  D  R  R  C  I  D  Q  Q  Q  Q  E  V  A  P  P  S  P  T  G  A  P  C  A  S  I  S  S  S  S  S  R  R  R  R  S  Q  H  H  R  R  G  G  S  S  N  S  K  F  R  Q  I  S :   D  L  A  S  A  G  N  *  S  S  M  S  G  E  V  Q  M  S  S  E  K  Q  P  R  R  G  L  S  C  T  R  Y  F  D  A  L  W  F  C  Y   : S  P  V  H  Q  M  Q  Q  Y  Y  R  L  G  A  L  D  N  C  S  K  K  W  S  G  L  V  D  C  L  T  L  K  T  K  R  S  S  E  V  E  :  E  I  L  E  T  R  E  K  A  K  P  H  L  W  S  T  R  T  P  E  E  A  A  A  Y  W  S  E  L  F  D  H  L  D  E  E  *  N  S  *  D  L  F  I  R  H  L  L  N  Q  Y  E  K  V  Y  Y  I  I  *  N  N  L  L  P  N  D  A  C  F  K  H  V  L  E  A  P  W  L  S  K  W  V  S  K  E  A  P  V  *  E  C  L  E  *  E  H  C  V  G  K  S  S  F  S  L  S  D  *  S  S  I  N  K  F  Q  Q  S  *  T  S  E  *  H  H  L  L  I  Q  M  N  C  G  A  Y  H  C  I  I  K  R  W  N  K  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15447" stop="15351"/>
                    <exon start="12270" stop="12152"/>
                    <exon start="11100" stop="10990"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSMSGEVQMSSEKQPRRGLSCTRYFDALWFCYSPVHQMQQYYRLGALDNCSKKWSGLVDCLTLKTKRSSEVEEILETREKAKPHLWSTRTPEEAAAYWSELFDHLDEE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19315" stop="19107"/>
                    <exon start="15472" stop="15448"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRPPNPDPPLIGAHPTHSDRRCIDQQQQEVAPPSPTGAPCASISSSSSRRRRSQHHRRGGSSNSKFRQISDLASAGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="19311" e_stop="19107"/>
            <exon e_start="15472" e_stop="15351"/>
            <exon e_start="11100" e_stop="10915"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.405" e_score="0.985"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="19311" e_stop="19107" e_length="205"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.405">
            <gDNA_intron_boundary i_start="19106" i_stop="15473" i_length="3634"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15472" e_stop="15351" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="15350" i_stop="11101" i_length="4250"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11100" e_stop="10915" e_length="186"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19311" stop="19107"/>
              <exon start="15472" stop="15351"/>
              <exon start="11100" stop="10915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284976" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCCACCCAACCCCGATCCACCCCTGATCGGCGCCCATCCCACCCATTCCGACCGGCGCTGCATAGATCAGCAGCAGCAGGAGGTCGCGCCACCTTCCCCGACCGGAGCTCCGTGCGCCTCGATCAGCAGCAGCAGCAGCAGGAGGAGGAGGTCGCAGCATCACCGCAGAGGCGGCAGCAGCAACAGCAAATTCCGGCAGATTAG : TGATTTAGCTTCAGCCGGAAATTGATCTTCAATGTCAGGAGAAGTTCAGATGAGTTCAGAAAAGCAACCACGAAGAGGACTGTCATGCACCCGTTACTTCGATGCACTCTGGTTCTGCTACT : GAAATTTTAGAAACACGCGAGAAAGCGAAGCCTCACCTGTGGTCAACACGAACCCCTGAAGAAGCCGCAGCTTATTGGAGCGAACTCTTTGACCATCTAGATGAAGAGTAAAACTCTTAAGACCTTTTCATCAGACATTTGCTCAATCAATACGAGAAAGTTTATTATATCATTTGAAATAATCTT</gDNA_template>
            <first_frame> A  H  P  T  P  I  H  P  *  S  A  P  I  P  P  I  P  T  G  A  A  *  I  S  S  S  R  R  S  R  H  L  P  R  P  E  L  R  A  P  R  S  A  A  A  A  A  G  G  G  G  R  S  I  T  A  E  A  A  A  A  T  A  N  S  G  R  L   : V  I  *  L  Q  P  E  I  D  L  Q  C  Q  E  K  F  R  *  V  Q  K  S  N  H  E  E  D  C  H  A  P  V  T  S  M  H  S  G  S  A  T  :  E  I  L  E  T  R  E  K  A  K  P  H  L  W  S  T  R  T  P  E  E  A  A  A  Y  W  S  E  L  F  D  H  L  D  E  E  *  N  S  *  D  L  F  I  R  H  L  L  N  Q  Y  E  K  V  Y  Y  I  I  *  N  N  L </first_frame>
            <second_frame>  P  T  Q  P  R  S  T  P  D  R  R  P  S  H  P  F  R  P  A  L  H  R  S  A  A  A  G  G  R  A  T  F  P  D  R  S  S  V  R  L  D  Q  Q  Q  Q  Q  Q  E  E  E  V  A  A  S  P  Q  R  R  Q  Q  Q  Q  Q  I  P  A  D  *  :  *  F  S  F  S  R  K  L  I  F  N  V  R  R  S  S  D  E  F  R  K  A  T  T  K  R  T  V  M  H  P  L  L  R  C  T  L  V  L  L  L :   K  F  *  K  H  A  R  K  R  S  L  T  C  G  Q  H  E  P  L  K  K  P  Q  L  I  G  A  N  S  L  T  I  *  M  K  S  K  T  L  K  T  F  S  S  D  I  C  S  I  N  T  R  K  F  I  I  S  F  E  I  I   </second_frame>
            <third_frame>   P  P  N  P  D  P  P  L  I  G  A  H  P  T  H  S  D  R  R  C  I  D  Q  Q  Q  Q  E  V  A  P  P  S  P  T  G  A  P  C  A  S  I  S  S  S  S  S  R  R  R  R  S  Q  H  H  R  R  G  G  S  S  N  S  K  F  R  Q  I  S :   D  L  A  S  A  G  N  *  S  S  M  S  G  E  V  Q  M  S  S  E  K  Q  P  R  R  G  L  S  C  T  R  Y  F  D  A  L  W  F  C  Y   : *  N  F  R  N  T  R  E  S  E  A  S  P  V  V  N  T  N  P  *  R  S  R  S  L  L  E  R  T  L  *  P  S  R  *  R  V  K  L  L  R  P  F  H  Q  T  F  A  Q  S  I  R  E  S  L  L  Y  H  L  K  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19309" stop="19107"/>
                    <exon start="15472" stop="15448"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PPNPDPPLIGAHPTHSDRRCIDQQQQEVAPPSPTGAPCASISSSSSRRRRSQHHRRGGSSNSKFRQISDLASAGN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19310" stop="19107"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTQPRSTPDRRPSHPFRPALHRSAAAGGRATFPDRSSVRLDQQQQQQEEEVAASPQRRQQQQQIPAD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="22428" PGL_stop="27185"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22428" e_stop="22926"/>
            <exon e_start="26407" e_stop="27185"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22428" e_stop="22926" e_length="499"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="22927" i_stop="26406" i_length="3480"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="26407" e_stop="27185" e_length="779"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22428" stop="22926"/>
              <exon start="26407" stop="26598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22429" stop="22826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22517" stop="22691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22544" stop="22926"/>
              <exon start="26407" stop="26599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22569" stop="22926"/>
              <exon start="26407" stop="26748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22572" stop="22926"/>
              <exon start="26407" stop="26715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22577" stop="22926"/>
              <exon start="26407" stop="26748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22596" stop="22926"/>
              <exon start="26407" stop="26700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22866" stop="22926"/>
              <exon start="26407" stop="27102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26450" stop="26975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26704" stop="27185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464339" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCCTTCCCTCCAACCTGACAACCAACAAATACCCGAATCTCTTATGTAACACTTTTTTCAACAATTGATTGATCATTTGCTCAGTCAAAATCAATATAAATCCTTTCCATTATCTTCCCCATTAAACCCTAACCCTATACTCCGATTGTTCTCTGAACGGGAAAAAGATCAACCCAAGTTTATGAATTAAGCACTACGAAGTTCGAGAACCCGATCTTTCTTCAATTTGATCGATCGGGTTATAGTTTTTTTTTTTTGTTTACAAAGATGTCGAAATTGTATGGAGGGGATTTCAATCAGAAAATAGATTATGTGTTCAAGGCGGTGCTGATCGGAGATTCTGCAGTTGGAAAATCGCAGTTATTGGCAAGATTTTCGAGGAATGAGTTTAGTCTTGATTCAAAGGCGACCATCGGTGTTGAGTTCCAGACGAGGACGTTAGAAATCGATAATAAGACTATTAAGGCTCAGATTTGGGATACTGCTGGTCAGGAGAG : ATATAGGGCAGTGACAAGTGCGTACTACCGAGGTGCTGTTGGAGCAATGCTAGTCTATGACATTACCAAACGTCAATCTTTTGATCATATCGCCAGGTGGTTGGAGGAACTGCGGGGCCATGCTGATAAAAACATTGTCATCATGCTTGTAGGCAACAAGACTGACTTGGGTAGTCTTCGTGCTGTACCTACTGAGGATGCGAAAGAGTTTGCTGAGAAAGAGAACTTGTTCTTTATTGAAACATCGGCCCTAGAATCAACAAATGTGGATACAGCTTTTGTTAATGTCTTGACGGAGATATATAGGGTTGTCAGCAAGAAATCCCTTGTTGCCAATGAGGCAGAATCCGCCGCTGGGAGTTCAGCTCTCCTCAGGGGAAAGGAAATTGTTGTTCCTGGCCAAGGACCTGTACCAAGTGGGAGCTCATACAGCTGTTGCAGATCATAGTAGGAGTCAATCGAAGTGGTTCTCAAAGTTGTATAGGTTTTTACATGTATCAGATTTCAATGCTATGCACGTCTATCAAATGCAAATCTGAGTGCTACTACAACTACATGATGCTACATTGGTATTCATCCACTTTCCTCTCTCTAATTTGCGCTTTCGTCATTTGTGTAAAAAAGAATCACAGTTCAAAACCATTAAATTTCAATCTTGGTCTTATGCTAAATGTGCACTTGACCGTCCCAAAAAGAGTCTGATTAATCATCCTCTGTGACTGAAATTTTTATGATGAATATTTTGCAACGAATCTATAATCTGCTACTCTTTCTTGCTT</gDNA_template>
            <first_frame> V  P  S  L  Q  P  D  N  Q  Q  I  P  E  S  L  M  *  H  F  F  Q  Q  L  I  D  H  L  L  S  Q  N  Q  Y  K  S  F  P  L  S  S  P  L  N  P  N  P  I  L  R  L  F  S  E  R  E  K  D  Q  P  K  F  M  N  *  A  L  R  S  S  R  T  R  S  F  F  N  L  I  D  R  V  I  V  F  F  F  C  L  Q  R  C  R  N  C  M  E  G  I  S  I  R  K  *  I  M  C  S  R  R  C  *  S  E  I  L  Q  L  E  N  R  S  Y  W  Q  D  F  R  G  M  S  L  V  L  I  Q  R  R  P  S  V  L  S  S  R  R  G  R  *  K  S  I  I  R  L  L  R  L  R  F  G  I  L  L  V  R  R   : D  I  G  Q  *  Q  V  R  T  T  E  V  L  L  E  Q  C  *  S  M  T  L  P  N  V  N  L  L  I  I  S  P  G  G  W  R  N  C  G  A  M  L  I  K  T  L  S  S  C  L  *  A  T  R  L  T  W  V  V  F  V  L  Y  L  L  R  M  R  K  S  L  L  R  K  R  T  C  S  L  L  K  H  R  P  *  N  Q  Q  M  W  I  Q  L  L  L  M  S  *  R  R  Y  I  G  L  S  A  R  N  P  L  L  P  M  R  Q  N  P  P  L  G  V  Q  L  S  S  G  E  R  K  L  L  F  L  A  K  D  L  Y  Q  V  G  A  H  T  A  V  A  D  H  S  R  S  Q  S  K  W  F  S  K  L  Y  R  F  L  H  V  S  D  F  N  A  M  H  V  Y  Q  M  Q  I  *  V  L  L  Q  L  H  D  A  T  L  V  F  I  H  F  P  L  S  N  L  R  F  R  H  L  C  K  K  E  S  Q  F  K  T  I  K  F  Q  S  W  S  Y  A  K  C  A  L  D  R  P  K  K  S  L  I  N  H  P  L  *  L  K  F  L  *  *  I  F  C  N  E  S  I  I  C  Y  S  F  L  L </first_frame>
            <second_frame>  F  L  P  S  N  L  T  T  N  K  Y  P  N  L  L  C  N  T  F  F  N  N  *  L  I  I  C  S  V  K  I  N  I  N  P  F  H  Y  L  P  H  *  T  L  T  L  Y  S  D  C  S  L  N  G  K  K  I  N  P  S  L  *  I  K  H  Y  E  V  R  E  P  D  L  S  S  I  *  S  I  G  L  *  F  F  F  F  V  Y  K  D  V  E  I  V  W  R  G  F  Q  S  E  N  R  L  C  V  Q  G  G  A  D  R  R  F  C  S  W  K  I  A  V  I  G  K  I  F  E  E  *  V  *  S  *  F  K  G  D  H  R  C  *  V  P  D  E  D  V  R  N  R  *  *  D  Y  *  G  S  D  L  G  Y  C  W  S  G  E  :  I  *  G  S  D  K  C  V  L  P  R  C  C  W  S  N  A  S  L  *  H  Y  Q  T  S  I  F  *  S  Y  R  Q  V  V  G  G  T  A  G  P  C  *  *  K  H  C  H  H  A  C  R  Q  Q  D  *  L  G  *  S  S  C  C  T  Y  *  G  C  E  R  V  C  *  E  R  E  L  V  L  Y  *  N  I  G  P  R  I  N  K  C  G  Y  S  F  C  *  C  L  D  G  D  I  *  G  C  Q  Q  E  I  P  C  C  Q  *  G  R  I  R  R  W  E  F  S  S  P  Q  G  K  G  N  C  C  S  W  P  R  T  C  T  K  W  E  L  I  Q  L  L  Q  I  I  V  G  V  N  R  S  G  S  Q  S  C  I  G  F  Y  M  Y  Q  I  S  M  L  C  T  S  I  K  C  K  S  E  C  Y  Y  N  Y  M  M  L  H  W  Y  S  S  T  F  L  S  L  I  C  A  F  V  I  C  V  K  K  N  H  S  S  K  P  L  N  F  N  L  G  L  M  L  N  V  H  L  T  V  P  K  R  V  *  L  I  I  L  C  D  *  N  F  Y  D  E  Y  F  A  T  N  L  *  S  A  T  L  S  C   </second_frame>
            <third_frame>   S  F  P  P  T  *  Q  P  T  N  T  R  I  S  Y  V  T  L  F  S  T  I  D  *  S  F  A  Q  S  K  S  I  *  I  L  S  I  I  F  P  I  K  P  *  P  Y  T  P  I  V  L  *  T  G  K  R  S  T  Q  V  Y  E  L  S  T  T  K  F  E  N  P  I  F  L  Q  F  D  R  S  G  Y  S  F  F  F  L  F  T  K  M  S  K  L  Y  G  G  D  F  N  Q  K  I  D  Y  V  F  K  A  V  L  I  G  D  S  A  V  G  K  S  Q  L  L  A  R  F  S  R  N  E  F  S  L  D  S  K  A  T  I  G  V  E  F  Q  T  R  T  L  E  I  D  N  K  T  I  K  A  Q  I  W  D  T  A  G  Q  E  R :   Y  R  A  V  T  S  A  Y  Y  R  G  A  V  G  A  M  L  V  Y  D  I  T  K  R  Q  S  F  D  H  I  A  R  W  L  E  E  L  R  G  H  A  D  K  N  I  V  I  M  L  V  G  N  K  T  D  L  G  S  L  R  A  V  P  T  E  D  A  K  E  F  A  E  K  E  N  L  F  F  I  E  T  S  A  L  E  S  T  N  V  D  T  A  F  V  N  V  L  T  E  I  Y  R  V  V  S  K  K  S  L  V  A  N  E  A  E  S  A  A  G  S  S  A  L  L  R  G  K  E  I  V  V  P  G  Q  G  P  V  P  S  G  S  S  Y  S  C  C  R  S  *  *  E  S  I  E  V  V  L  K  V  V  *  V  F  T  C  I  R  F  Q  C  Y  A  R  L  S  N  A  N  L  S  A  T  T  T  T  *  C  Y  I  G  I  H  P  L  S  S  L  *  F  A  L  S  S  F  V  *  K  R  I  T  V  Q  N  H  *  I  S  I  L  V  L  C  *  M  C  T  *  P  S  Q  K  E  S  D  *  S  S  S  V  T  E  I  F  M  M  N  I  L  Q  R  I  Y  N  L  L  L  F  L  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22586" stop="22926"/>
                    <exon start="26407" stop="26854"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TGKRSTQVYELSTTKFENPIFLQFDRSGYSFFFLFTKMSKLYGGDFNQKIDYVFKAVLIGDSAVGKSQLLARFSRNEFSLDSKATIGVEFQTRTLEIDNKTIKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHIARWLEELRGHADKNIVIMLVGNKTDLGSLRAVPTEDAKEFAEKENLFFIETSALESTNVDTAFVNVLTEIYRVVSKKSLVANEAESAAGSSALLRGKEIVVPGQGPVPSGSSYSCCRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="32850" PGL_stop="31407"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32850" e_stop="32509"/>
            <exon e_start="31781" e_stop="31407"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32850" e_stop="32509" e_length="342"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32508" i_stop="31782" i_length="727"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="31781" e_stop="31407" e_length="375"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32850" stop="32509"/>
              <exon start="31781" stop="31489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32833" stop="32509"/>
              <exon start="31781" stop="31407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32833" stop="32509"/>
              <exon start="31781" stop="31407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32833" stop="32509"/>
              <exon start="31781" stop="31562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32832" stop="32509"/>
              <exon start="31781" stop="31550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32831" stop="32509"/>
              <exon start="31781" stop="31489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32827" stop="32509"/>
              <exon start="31781" stop="31424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32809" stop="32509"/>
              <exon start="31781" stop="31610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618695" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32774" stop="32509"/>
              <exon start="31781" stop="31567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32740" stop="32509"/>
              <exon start="31781" stop="31503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32566" stop="32509"/>
              <exon start="31781" stop="31433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32544" stop="32509"/>
              <exon start="31781" stop="31433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229196" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTATAGTATCAATTCAAAAAATATTTTTAAAAAATAAAATGACTAGTCGTACTTTAGTAATGCTGATATTAGTAATAACGTACAATAGTATTGCGGTGAAAGGAAGCAACGGTCATCCCTGTAGCAGCACATTCTTTTCAGCGTTGATTCAGCTGATACCTTGTAGGGCATCGGTGGTTCCGTTCAGTTCGGTACCACCGAGCGAAGCGTGCTGCGCTTCGATCAAGGCTTTAGGGCAGCCATGTCTCTGTGTTCTTATCAATGGCCCTCCTATTTCTGGTGTTGATCGAAACATGGCCGTACAGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAAT : GTGAATTTGGAAAGTAGGAGATACTAGATTGATTCTAGTAGGCGTGGTGAAGGAGAAGTCTATAGATCAATAAATTGTGCAGGGGAGCTTAGCAACTCTGCACAATTAGAAATATTTACTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTTGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATGTAATGCAAAATGGTCGCTTCGAAATGGTAATTAAACATTAGTGATAAGAACTTAGTGAATATTTATCATTTTGATGTCATTACATTAGTTCAAATTTATGCGATTATCAATCTTTACAAAAAAAAAAAAAATTATGAATCGATATATCTATGATATAATT</gDNA_template>
            <first_frame> K  L  *  Y  Q  F  K  K  Y  F  *  K  I  K  *  L  V  V  L  *  *  C  *  Y  *  *  *  R  T  I  V  L  R  *  K  E  A  T  V  I  P  V  A  A  H  S  F  Q  R  *  F  S  *  Y  L  V  G  H  R  W  F  R  S  V  R  Y  H  R  A  K  R  A  A  L  R  S  R  L  *  G  S  H  V  S  V  F  L  S  M  A  L  L  F  L  V  L  I  E  T  W  P  Y  S  F  L  R  S  A  L  P  T  L  N  N  :  V  N  L  E  S  R  R  Y  *  I  D  S  S  R  R  G  E  G  E  V  Y  R  S  I  N  C  A  G  E  L  S  N  S  A  Q  L  E  I  F  T  K  S  N  *  V  F  T  *  L  L  *  *  F  I  *  L  A  L  I  S  L  L  *  *  *  W  P  T  L  I  L  C  N  A  K  W  S  L  R  N  G  N  *  T  L  V  I  R  T  *  *  I  F  I  I  L  M  S  L  H  *  F  K  F  M  R  L  S  I  F  T  K  K  K  K  I  M  N  R  Y  I  Y  D  I  I </first_frame>
            <second_frame>  N  Y  S  I  N  S  K  N  I  F  K  K  *  N  D  *  S  Y  F  S  N  A  D  I  S  N  N  V  Q  *  Y  C  G  E  R  K  Q  R  S  S  L  *  Q  H  I  L  F  S  V  D  S  A  D  T  L  *  G  I  G  G  S  V  Q  F  G  T  T  E  R  S  V  L  R  F  D  Q  G  F  R  A  A  M  S  L  C  S  Y  Q  W  P  S  Y  F  W  C  *  S  K  H  G  R  T  A  S  *  E  V  H  C  Q  L  *  T  M :   *  I  W  K  V  G  D  T  R  L  I  L  V  G  V  V  K  E  K  S  I  D  Q  *  I  V  Q  G  S  L  A  T  L  H  N  *  K  Y  L  L  N  Q  I  K  C  S  L  N  C  Y  N  N  L  F  S  L  P  *  Y  H  C  Y  S  N  N  G  Q  H  *  Y  Y  V  M  Q  N  G  R  F  E  M  V  I  K  H  *  *  *  E  L  S  E  Y  L  S  F  *  C  H  Y  I  S  S  N  L  C  D  Y  Q  S  L  Q  K  K  K  K  L  *  I  D  I  S  M  I  *   </second_frame>
            <third_frame>   T  I  V  S  I  Q  K  I  F  L  K  N  K  M  T  S  R  T  L  V  M  L  I  L  V  I  T  Y  N  S  I  A  V  K  G  S  N  G  H  P  C  S  S  T  F  F  S  A  L  I  Q  L  I  P  C  R  A  S  V  V  P  F  S  S  V  P  P  S  E  A  C  C  A  S  I  K  A  L  G  Q  P  C  L  C  V  L  I  N  G  P  P  I  S  G  V  D  R  N  M  A  V  Q  L  P  E  K  C  T  A  N  F  E  Q   : C  E  F  G  K  *  E  I  L  D  *  F  *  *  A  W  *  R  R  S  L  *  I  N  K  L  C  R  G  A  *  Q  L  C  T  I  R  N  I  Y  *  I  K  L  S  V  H  L  I  V  I  I  I  Y  L  A  C  L  N  I  I  V  I  V  I  M  A  N  I  N  I  M  *  C  K  M  V  A  S  K  W  *  L  N  I  S  D  K  N  L  V  N  I  Y  H  F  D  V  I  T  L  V  Q  I  Y  A  I  I  N  L  Y  K  K  K  K  N  Y  E  S  I  Y  L  *  Y  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32848" stop="32509"/>
                    <exon start="31781" stop="31765"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIVSIQKIFLKNKMTSRTLVMLILVITYNSIAVKGSNGHPCSSTFFSALIQLIPCRASVVPFSSVPPSEACCASIKALGQPCLCVLINGPPISGVDRNMAVQLPEKCTANFEQCEFGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="32833" e_stop="32509"/>
            <exon e_start="31781" e_stop="31507"/>
            <exon e_start="31449" e_stop="31439"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32833" e_stop="32509" e_length="325"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32508" i_stop="31782" i_length="727"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31781" e_stop="31507" e_length="275"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31506" i_stop="31450" i_length="57"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31449" e_stop="31439" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32833" stop="32509"/>
              <exon start="31781" stop="31562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32832" stop="32509"/>
              <exon start="31781" stop="31550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32828" stop="32509"/>
              <exon start="31781" stop="31507"/>
              <exon start="31449" stop="31439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32827" stop="32509"/>
              <exon start="31781" stop="31507"/>
              <exon start="31449" stop="31439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32809" stop="32509"/>
              <exon start="31781" stop="31610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618695" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32774" stop="32509"/>
              <exon start="31781" stop="31567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320697" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAAATATTTTTAAAAAATAAAATGACTAGTCGTACTTTAGTAATGCTGATATTAGTAATAACGTACAATAGTATTGCGGTGAAAGGAAGCAACGGTCATCCCTGTAGCAGCACATTCTTTTCAGCGTTGATTCAGCTGATACCTTGTAGGGCATCGGTGGTTCCGTTCAGTTCGGTACCACCGAGCGAAGCGTGCTGCGCTTCGATCAAGGCTTTAGGGCAGCCATGTCTCTGTGTTCTTATCAATGGCCCTCCTATTTCTGGTGTTGATCGAAACATGGCCGTACAGCTTCCTGAGAAGTGCACTGCCAACTTTGAACAAT : GTGAATTTGGAAAGTAGGAGATACTAGATTGATTCTAGTAGGCGTGGTGAAGGAGAAGTCTATAGATCAATAAATTGTGCAGGGGAGCTTAGCAACTCTGCACAATTAGAAATATTTACTAAATCAAATTAAGTGTTCACTTAATTGTTATAATAATTTATTTAGCTTGCCTTAATATCATTGTTATAGTAATAATGGCCAACATTAATATTATGTAATGCAAAATGGTCGCTTCGAAATGGTAATTAAACATTAGTGATAAGAACTTAGTGAAT : AAAAAAAAAAA</gDNA_template>
            <first_frame> Q  K  I  F  L  K  N  K  M  T  S  R  T  L  V  M  L  I  L  V  I  T  Y  N  S  I  A  V  K  G  S  N  G  H  P  C  S  S  T  F  F  S  A  L  I  Q  L  I  P  C  R  A  S  V  V  P  F  S  S  V  P  P  S  E  A  C  C  A  S  I  K  A  L  G  Q  P  C  L  C  V  L  I  N  G  P  P  I  S  G  V  D  R  N  M  A  V  Q  L  P  E  K  C  T  A  N  F  E  Q   : C  E  F  G  K  *  E  I  L  D  *  F  *  *  A  W  *  R  R  S  L  *  I  N  K  L  C  R  G  A  *  Q  L  C  T  I  R  N  I  Y  *  I  K  L  S  V  H  L  I  V  I  I  I  Y  L  A  C  L  N  I  I  V  I  V  I  M  A  N  I  N  I  M  *  C  K  M  V  A  S  K  W  *  L  N  I  S  D  K  N  L  V  N  :  K  K  K   </first_frame>
            <second_frame>  K  K  Y  F  *  K  I  K  *  L  V  V  L  *  *  C  *  Y  *  *  *  R  T  I  V  L  R  *  K  E  A  T  V  I  P  V  A  A  H  S  F  Q  R  *  F  S  *  Y  L  V  G  H  R  W  F  R  S  V  R  Y  H  R  A  K  R  A  A  L  R  S  R  L  *  G  S  H  V  S  V  F  L  S  M  A  L  L  F  L  V  L  I  E  T  W  P  Y  S  F  L  R  S  A  L  P  T  L  N  N  :  V  N  L  E  S  R  R  Y  *  I  D  S  S  R  R  G  E  G  E  V  Y  R  S  I  N  C  A  G  E  L  S  N  S  A  Q  L  E  I  F  T  K  S  N  *  V  F  T  *  L  L  *  *  F  I  *  L  A  L  I  S  L  L  *  *  *  W  P  T  L  I  L  C  N  A  K  W  S  L  R  N  G  N  *  T  L  V  I  R  T  *  *  I :   K  K  K  </second_frame>
            <third_frame>   K  N  I  F  K  K  *  N  D  *  S  Y  F  S  N  A  D  I  S  N  N  V  Q  *  Y  C  G  E  R  K  Q  R  S  S  L  *  Q  H  I  L  F  S  V  D  S  A  D  T  L  *  G  I  G  G  S  V  Q  F  G  T  T  E  R  S  V  L  R  F  D  Q  G  F  R  A  A  M  S  L  C  S  Y  Q  W  P  S  Y  F  W  C  *  S  K  H  G  R  T  A  S  *  E  V  H  C  Q  L  *  T  M :   *  I  W  K  V  G  D  T  R  L  I  L  V  G  V  V  K  E  K  S  I  D  Q  *  I  V  Q  G  S  L  A  T  L  H  N  *  K  Y  L  L  N  Q  I  K  C  S  L  N  C  Y  N  N  L  F  S  L  P  *  Y  H  C  Y  S  N  N  G  Q  H  *  Y  Y  V  M  Q  N  G  R  F  E  M  V  I  K  H  *  *  *  E  L  S  E   : *  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32833" stop="32509"/>
                    <exon start="31781" stop="31765"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKIFLKNKMTSRTLVMLILVITYNSIAVKGSNGHPCSSTFFSALIQLIPCRASVVPFSSVPPSEACCASIKALGQPCLCVLINGPPISGVDRNMAVQLPEKCTANFEQCEFGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="33849" PGL_stop="34577"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33849" e_stop="34577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="33849" e_stop="34577" e_length="729"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33849" stop="34521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33852" stop="34529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33856" stop="34523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33856" stop="34464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33856" stop="34458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33856" stop="34443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33858" stop="34577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33858" stop="34527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33858" stop="34518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33859" stop="34503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33859" stop="34452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33860" stop="34334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33862" stop="34509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33870" stop="34445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33871" stop="34530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33872" stop="34527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33875" stop="34379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33878" stop="34224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33883" stop="34319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33892" stop="34318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33897" stop="34521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33915" stop="34525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33985" stop="34495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34004" stop="34465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34004" stop="34465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34005" stop="34520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34009" stop="34521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34009" stop="34521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34009" stop="34521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34031" stop="34530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34064" stop="34455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34064" stop="34434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34065" stop="34456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34065" stop="34456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34143" stop="34521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34176" stop="34521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238989" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAGAACTCGAGTTTTCATCAGTAAAAAGCAAAATGGCCCGTACCAAGCAGACTGCTCGCAAATCCACTGGTGGAAAGGCACCAAGGAAGCAGCTAGCTACCAAGGCCGCAAGAAAGTCAGCTCCGGCTACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTAGCTTTAAGGGAAATCAGGAAGTACCAGAAGTCTACTGAGTTGTTGATCAGGAAGCTTCCTTTTCAGAGGCTAGTGAGGGAAATCGCTCAGGATTTCAAAACAGATCTGAGGTTTCAGAGCAGTGCTGTGGCTGCTCTACAAGAGGCTGCTGAGGCTTACCTCGTTGGTCTCTTTGAAGATACTAATCTCTGTGCAATTCACGCCAAGAGGGTCACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCCGTGGAGAAAGGGCTTAAGAAGAAACTTTTAACGGTTAAAGCTGATTAGGGTTTGTCTGCTAGGGTTAGTGGCGTAAATCCTAATAGATAATTTTAGTTGAAGTAGGTGTAAACTGTTGGTTTACCAGTTTCTGGATCTGATTAATGAAAATTTGTACCTTTTTCTTTTTAATCTAAGATCTTGCCCTTACGTCGGTACTGATGTATTCCAATGATTAACGATTGAAGCAATACACAGTGTTTCTTGATTCGAGTTTTCTTAAAATTTTGATTTAAATAGATCTATTAATTTACAACTGCACA</gDNA_template>
            <first_frame> T  E  L  E  F  S  S  V  K  S  K  M  A  R  T  K  Q  T  A  R  K  S  T  G  G  K  A  P  R  K  Q  L  A  T  K  A  A  R  K  S  A  P  A  T  G  G  V  K  K  P  H  R  F  R  P  G  T  V  A  L  R  E  I  R  K  Y  Q  K  S  T  E  L  L  I  R  K  L  P  F  Q  R  L  V  R  E  I  A  Q  D  F  K  T  D  L  R  F  Q  S  S  A  V  A  A  L  Q  E  A  A  E  A  Y  L  V  G  L  F  E  D  T  N  L  C  A  I  H  A  K  R  V  T  I  M  P  K  D  I  Q  L  A  R  R  I  R  G  E  R  A  *  E  E  T  F  N  G  *  S  *  L  G  F  V  C  *  G  *  W  R  K  S  *  *  I  I  L  V  E  V  G  V  N  C  W  F  T  S  F  W  I  *  L  M  K  I  C  T  F  F  F  L  I  *  D  L  A  L  T  S  V  L  M  Y  S  N  D  *  R  L  K  Q  Y  T  V  F  L  D  S  S  F  L  K  I  L  I  *  I  D  L  L  I  Y  N  C  T </first_frame>
            <second_frame>  Q  N  S  S  F  H  Q  *  K  A  K  W  P  V  P  S  R  L  L  A  N  P  L  V  E  R  H  Q  G  S  S  *  L  P  R  P  Q  E  S  Q  L  R  L  P  E  E  *  R  S  L  T  V  S  G  Q  E  L  *  L  *  G  K  S  G  S  T  R  S  L  L  S  C  *  S  G  S  F  L  F  R  G  *  *  G  K  S  L  R  I  S  K  Q  I  *  G  F  R  A  V  L  W  L  L  Y  K  R  L  L  R  L  T  S  L  V  S  L  K  I  L  I  S  V  Q  F  T  P  R  G  S  L  S  C  P  K  I  F  S  L  L  G  G  S  V  E  K  G  L  K  K  K  L  L  T  V  K  A  D  *  G  L  S  A  R  V  S  G  V  N  P  N  R  *  F  *  L  K  *  V  *  T  V  G  L  P  V  S  G  S  D  *  *  K  F  V  P  F  S  F  *  S  K  I  L  P  L  R  R  Y  *  C  I  P  M  I  N  D  *  S  N  T  Q  C  F  L  I  R  V  F  L  K  F  *  F  K  *  I  Y  *  F  T  T  A   </second_frame>
            <third_frame>   R  T  R  V  F  I  S  K  K  Q  N  G  P  Y  Q  A  D  C  S  Q  I  H  W  W  K  G  T  K  E  A  A  S  Y  Q  G  R  K  K  V  S  S  G  Y  R  R  S  E  E  A  S  P  F  Q  A  R  N  C  S  F  K  G  N  Q  E  V  P  E  V  Y  *  V  V  D  Q  E  A  S  F  S  E  A  S  E  G  N  R  S  G  F  Q  N  R  S  E  V  S  E  Q  C  C  G  C  S  T  R  G  C  *  G  L  P  R  W  S  L  *  R  Y  *  S  L  C  N  S  R  Q  E  G  H  Y  H  A  Q  R  Y  S  A  C  *  E  D  P  W  R  K  G  L  R  R  N  F  *  R  L  K  L  I  R  V  C  L  L  G  L  V  A  *  I  L  I  D  N  F  S  *  S  R  C  K  L  L  V  Y  Q  F  L  D  L  I  N  E  N  L  Y  L  F  L  F  N  L  R  S  C  P  Y  V  G  T  D  V  F  Q  *  L  T  I  E  A  I  H  S  V  S  *  F  E  F  S  *  N  F  D  L  N  R  S  I  N  L  Q  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33849" stop="34292"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TELEFSSVKSKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="43582" PGL_stop="44063"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43582" e_stop="44063"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43582" e_stop="44063" e_length="482"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43582" stop="44063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207330" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGATCCTAGACTTAAGGTGGTTTCGGTGGTGGGAATGGGAGGTTCAGGAAAGACCACCCTGGTTAAGAAAGTGTATGAGGATGCAACAGTCAAGAAAAACTTCAATAGTCTTGCTTGGATAACAGTTTCCAAGTCCTTCAAGGTTGAGGAAGTTTTGAAAGATATGATTCAACAGCTCTACGATGAAGTGAAGCAGCCAGCACCTGAAGGTCTAAACACCATGAGTAGTAACAGACTAAAAACAATTGCGAAAGTATTCCTGCAATCAAGAACATATGTGCTAGTTTTTGATGATGTTTGGAGCATTCAAGCTTGGGAAGCTATCAGATATGCATTGCCTGATGTAAATGACGGAAGTCGTGTTATCCTCACAACACGTCTTTTGGATGTGGCTTCCTTTTGTAGCATAGAGACCAATGGCTATGTTTATGAGGTGAAACCCTTGTCTACTGAAGAGTCATGGATTCTTTTCTGCCAAAAG</gDNA_template>
            <first_frame> M  I  L  D  L  R  W  F  R  W  W  E  W  E  V  Q  E  R  P  P  W  L  R  K  C  M  R  M  Q  Q  S  R  K  T  S  I  V  L  L  G  *  Q  F  P  S  P  S  R  L  R  K  F  *  K  I  *  F  N  S  S  T  M  K  *  S  S  Q  H  L  K  V  *  T  P  *  V  V  T  D  *  K  Q  L  R  K  Y  S  C  N  Q  E  H  M  C  *  F  L  M  M  F  G  A  F  K  L  G  K  L  S  D  M  H  C  L  M  *  M  T  E  V  V  L  S  S  Q  H  V  F  W  M  W  L  P  F  V  A  *  R  P  M  A  M  F  M  R  *  N  P  C  L  L  K  S  H  G  F  F  S  A  K   </first_frame>
            <second_frame>  *  S  *  T  *  G  G  F  G  G  G  N  G  R  F  R  K  D  H  P  G  *  E  S  V  *  G  C  N  S  Q  E  K  L  Q  *  S  C  L  D  N  S  F  Q  V  L  Q  G  *  G  S  F  E  R  Y  D  S  T  A  L  R  *  S  E  A  A  S  T  *  R  S  K  H  H  E  *  *  Q  T  K  N  N  C  E  S  I  P  A  I  K  N  I  C  A  S  F  *  *  C  L  E  H  S  S  L  G  S  Y  Q  I  C  I  A  *  C  K  *  R  K  S  C  Y  P  H  N  T  S  F  G  C  G  F  L  L  *  H  R  D  Q  W  L  C  L  *  G  E  T  L  V  Y  *  R  V  M  D  S  F  L  P  K  </second_frame>
            <third_frame>   D  P  R  L  K  V  V  S  V  V  G  M  G  G  S  G  K  T  T  L  V  K  K  V  Y  E  D  A  T  V  K  K  N  F  N  S  L  A  W  I  T  V  S  K  S  F  K  V  E  E  V  L  K  D  M  I  Q  Q  L  Y  D  E  V  K  Q  P  A  P  E  G  L  N  T  M  S  S  N  R  L  K  T  I  A  K  V  F  L  Q  S  R  T  Y  V  L  V  F  D  D  V  W  S  I  Q  A  W  E  A  I  R  Y  A  L  P  D  V  N  D  G  S  R  V  I  L  T  T  R  L  L  D  V  A  S  F  C  S  I  E  T  N  G  Y  V  Y  E  V  K  P  L  S  T  E  E  S  W  I  L  F  C  Q  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43584" stop="44063"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DPRLKVVSVVGMGGSGKTTLVKKVYEDATVKKNFNSLAWITVSKSFKVEEVLKDMIQQLYDEVKQPAPEGLNTMSSNRLKTIAKVFLQSRTYVLVFDDVWSIQAWEAIRYALPDVNDGSRVILTTRLLDVASFCSIETNGYVYEVKPLSTEESWILFCQK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="44179" PGL_stop="44761"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44179" e_stop="44761"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="44179" e_stop="44761" e_length="583"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44179" stop="44703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44496" stop="44761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368598" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAACAGGAACAACATTAGGGAATGGGGAATGCTTAATCACAGCCTTGGCCCTGAACTGGATTGCAATGACAAATTTGAGAGTATGAGAATAGTTTTGTTACTCAGTTTCAATGATCTCCCCTACTATCTTAAGCCATGTTTCCTGTATTTGAGCATTTATCCTGAGGATTATCTAATTGAGCGCAATACACTGATCTACCGGTGGATAACGGAAGGATTTGTAAAACAAAAAGAACGGAGGACAGTTGAAGACGTTGCAGACGGCTATCTCAATGAGCTCATCAACAGAAGCTTGATCCACCCTGTGCAGTACAATGATGACGGTAGCATGAAATTGGGTAGGATTCATGATCTGTACCGCGAGCTTATTCTATCAAAATCAAGAGATGATAACTTTACTGCAACAGTTGATGAGCATAATAAATTGTGGCCTGAAAAAACTCGACGGCTTTCAATGCATGGCATGTTGGGGAACCTACAAGTGAAAAGGTCAGTCACTAAACTTCGCTCTTTGCTTACATTTGGTGTAGCAGATCCACAGTCCTTGTCTTGCATAAGTCAAGTGCTTGGTAGCTCCCGGAT</gDNA_template>
            <first_frame> R  T  G  T  T  L  G  N  G  E  C  L  I  T  A  L  A  L  N  W  I  A  M  T  N  L  R  V  *  E  *  F  C  Y  S  V  S  M  I  S  P  T  I  L  S  H  V  S  C  I  *  A  F  I  L  R  I  I  *  L  S  A  I  H  *  S  T  G  G  *  R  K  D  L  *  N  K  K  N  G  G  Q  L  K  T  L  Q  T  A  I  S  M  S  S  S  T  E  A  *  S  T  L  C  S  T  M  M  T  V  A  *  N  W  V  G  F  M  I  C  T  A  S  L  F  Y  Q  N  Q  E  M  I  T  L  L  Q  Q  L  M  S  I  I  N  C  G  L  K  K  L  D  G  F  Q  C  M  A  C  W  G  T  Y  K  *  K  G  Q  S  L  N  F  A  L  C  L  H  L  V  *  Q  I  H  S  P  C  L  A  *  V  K  C  L  V  A  P  G  </first_frame>
            <second_frame>  E  Q  E  Q  H  *  G  M  G  N  A  *  S  Q  P  W  P  *  T  G  L  Q  *  Q  I  *  E  Y  E  N  S  F  V  T  Q  F  Q  *  S  P  L  L  S  *  A  M  F  P  V  F  E  H  L  S  *  G  L  S  N  *  A  Q  Y  T  D  L  P  V  D  N  G  R  I  C  K  T  K  R  T  E  D  S  *  R  R  C  R  R  L  S  Q  *  A  H  Q  Q  K  L  D  P  P  C  A  V  Q  *  *  R  *  H  E  I  G  *  D  S  *  S  V  P  R  A  Y  S  I  K  I  K  R  *  *  L  Y  C  N  S  *  *  A  *  *  I  V  A  *  K  N  S  T  A  F  N  A  W  H  V  G  E  P  T  S  E  K  V  S  H  *  T  S  L  F  A  Y  I  W  C  S  R  S  T  V  L  V  L  H  K  S  S  A  W  *  L  P  D </second_frame>
            <third_frame>   N  R  N  N  I  R  E  W  G  M  L  N  H  S  L  G  P  E  L  D  C  N  D  K  F  E  S  M  R  I  V  L  L  L  S  F  N  D  L  P  Y  Y  L  K  P  C  F  L  Y  L  S  I  Y  P  E  D  Y  L  I  E  R  N  T  L  I  Y  R  W  I  T  E  G  F  V  K  Q  K  E  R  R  T  V  E  D  V  A  D  G  Y  L  N  E  L  I  N  R  S  L  I  H  P  V  Q  Y  N  D  D  G  S  M  K  L  G  R  I  H  D  L  Y  R  E  L  I  L  S  K  S  R  D  D  N  F  T  A  T  V  D  E  H  N  K  L  W  P  E  K  T  R  R  L  S  M  H  G  M  L  G  N  L  Q  V  K  R  S  V  T  K  L  R  S  L  L  T  F  G  V  A  D  P  Q  S  L  S  C  I  S  Q  V  L  G  S  S  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44181" stop="44759"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRNNIREWGMLNHSLGPELDCNDKFESMRIVLLLSFNDLPYYLKPCFLYLSIYPEDYLIERNTLIYRWITEGFVKQKERRTVEDVADGYLNELINRSLIHPVQYNDDGSMKLGRIHDLYRELILSKSRDDNFTATVDEHNKLWPEKTRRLSMHGMLGNLQVKRSVTKLRSLLTFGVADPQSLSCISQVLGSSR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="44867" PGL_stop="46104"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44867" e_stop="46104"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="44867" e_stop="46104" e_length="1238"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44867" stop="45327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45117" stop="45836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45352" stop="45923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45845" stop="46104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283821" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTACTTCCAAGATCCATTGGAAGACTCAAACAGCTAGAAATATTAGATCTCAAGCAGACACATGTCACTGAGTTGCCTGTGGAGATTTTAAAACTTGAAAATCTCCGTCACCTTTTAGTCTATAGCCATGTATCCTATTCGTATCTTCCTTACAACTGTTCACCAGGTTTTAAGGCTTTCCGAGGAATTGGAGCTTTGAGAGCCTTGCAGAAACTTGTGTATATTGAGGCCACCCCTGGCAGTGGCATACTTAGAGAAGTAGGAATGTTGGGTGAACTGAGACGACTTTGTATTCTGAAGTTGAGAAAAGAAGATGGGAGGACAGTGTGCTCATCAATTCAAAAGCTCCGCAAGCTGGAGTCTTTAAATCTTAAATCGGTGGAAGAGCATGAGATACTTGATCTTTCTTACATGGCATCTCCTCCGCCTCTTCTTCAGCGCCTGTATTTGACAGGACACATTGTTAAGTTGCCTGCGTGGATTCAAGATCTTAATTCCTTAGTCAAAATTTACTTCAGGTGGACTCATTTATCAGAAGATCCACTGAAATATCTCCAAGATTTGCCCAATCTTGTCCATCTTGAATTTCTTGTAGGATACACCGGAAGGGAACTGTACTTTGAGCAAGGCAAGTTTCAAAGGCTTAAGCTTTTAAATTTTGACATGTTGGAAGGACTAAGGCAGGTGACAATCGGGGAAGGTGCAGTACCTCATCTTGAGAAGCTGGTTATCCAGCGATGTGCTTTGCTTGAGACCGTGCCAACTGGAATAGAGTGCCTCCTAAATCTGAAGGTTCTTGAATTCTTTGACATGCCTGATGAATTTATCATGACGTTGCGTCCAGACAAACTAGGTGCTGATGCTTGGAAAGTTTCACATATCCGTGAAGTATTCTATACATATTGGAGGGACGGTTGTTGGATGGTACATTCACTAAAGGAAAAGGAAAACAATCACATTTCTGATCCATCTGGAGCTGTGACTAGGACCTATGGAAGGCGAAATTCACTCTAAGTCGTTTGAAGGACGTAGAGCTCCAGTCTCCTTCCAATTTCTGTTGTAAATAATCTCTCTCTGATCCTTCATCACTTCACTTTTCCTGTTGTAATAAGCAGTGTATATAAATTTGTTATGTTTTCTTTACATTGCAAGAGTGAACTTAGTGTATGTAATATGGTGCAACTTTCAGTAATTTGTTTAGAAGAGTTTTGTGGATTCTCAGAGTTGCATTTTGCAA</gDNA_template>
            <first_frame> S  T  S  K  I  H  W  K  T  Q  T  A  R  N  I  R  S  Q  A  D  T  C  H  *  V  A  C  G  D  F  K  T  *  K  S  P  S  P  F  S  L  *  P  C  I  L  F  V  S  S  L  Q  L  F  T  R  F  *  G  F  P  R  N  W  S  F  E  S  L  A  E  T  C  V  Y  *  G  H  P  W  Q  W  H  T  *  R  S  R  N  V  G  *  T  E  T  T  L  Y  S  E  V  E  K  R  R  W  E  D  S  V  L  I  N  S  K  A  P  Q  A  G  V  F  K  S  *  I  G  G  R  A  *  D  T  *  S  F  L  H  G  I  S  S  A  S  S  S  A  P  V  F  D  R  T  H  C  *  V  A  C  V  D  S  R  S  *  F  L  S  Q  N  L  L  Q  V  D  S  F  I  R  R  S  T  E  I  S  P  R  F  A  Q  S  C  P  S  *  I  S  C  R  I  H  R  K  G  T  V  L  *  A  R  Q  V  S  K  A  *  A  F  K  F  *  H  V  G  R  T  K  A  G  D  N  R  G  R  C  S  T  S  S  *  E  A  G  Y  P  A  M  C  F  A  *  D  R  A  N  W  N  R  V  P  P  K  S  E  G  S  *  I  L  *  H  A  *  *  I  Y  H  D  V  A  S  R  Q  T  R  C  *  C  L  E  S  F  T  Y  P  *  S  I  L  Y  I  L  E  G  R  L  L  D  G  T  F  T  K  G  K  G  K  Q  S  H  F  *  S  I  W  S  C  D  *  D  L  W  K  A  K  F  T  L  S  R  L  K  D  V  E  L  Q  S  P  S  N  F  C  C  K  *  S  L  S  D  P  S  S  L  H  F  S  C  C  N  K  Q  C  I  *  I  C  Y  V  F  F  T  L  Q  E  *  T  *  C  M  *  Y  G  A  T  F  S  N  L  F  R  R  V  L  W  I  L  R  V  A  F  C   </first_frame>
            <second_frame>  V  L  P  R  S  I  G  R  L  K  Q  L  E  I  L  D  L  K  Q  T  H  V  T  E  L  P  V  E  I  L  K  L  E  N  L  R  H  L  L  V  Y  S  H  V  S  Y  S  Y  L  P  Y  N  C  S  P  G  F  K  A  F  R  G  I  G  A  L  R  A  L  Q  K  L  V  Y  I  E  A  T  P  G  S  G  I  L  R  E  V  G  M  L  G  E  L  R  R  L  C  I  L  K  L  R  K  E  D  G  R  T  V  C  S  S  I  Q  K  L  R  K  L  E  S  L  N  L  K  S  V  E  E  H  E  I  L  D  L  S  Y  M  A  S  P  P  P  L  L  Q  R  L  Y  L  T  G  H  I  V  K  L  P  A  W  I  Q  D  L  N  S  L  V  K  I  Y  F  R  W  T  H  L  S  E  D  P  L  K  Y  L  Q  D  L  P  N  L  V  H  L  E  F  L  V  G  Y  T  G  R  E  L  Y  F  E  Q  G  K  F  Q  R  L  K  L  L  N  F  D  M  L  E  G  L  R  Q  V  T  I  G  E  G  A  V  P  H  L  E  K  L  V  I  Q  R  C  A  L  L  E  T  V  P  T  G  I  E  C  L  L  N  L  K  V  L  E  F  F  D  M  P  D  E  F  I  M  T  L  R  P  D  K  L  G  A  D  A  W  K  V  S  H  I  R  E  V  F  Y  T  Y  W  R  D  G  C  W  M  V  H  S  L  K  E  K  E  N  N  H  I  S  D  P  S  G  A  V  T  R  T  Y  G  R  R  N  S  L  *  V  V  *  R  T  *  S  S  S  L  L  P  I  S  V  V  N  N  L  S  L  I  L  H  H  F  T  F  P  V  V  I  S  S  V  Y  K  F  V  M  F  S  L  H  C  K  S  E  L  S  V  C  N  M  V  Q  L  S  V  I  C  L  E  E  F  C  G  F  S  E  L  H  F  A  </second_frame>
            <third_frame>   Y  F  Q  D  P  L  E  D  S  N  S  *  K  Y  *  I  S  S  R  H  M  S  L  S  C  L  W  R  F  *  N  L  K  I  S  V  T  F  *  S  I  A  M  Y  P  I  R  I  F  L  T  T  V  H  Q  V  L  R  L  S  E  E  L  E  L  *  E  P  C  R  N  L  C  I  L  R  P  P  L  A  V  A  Y  L  E  K  *  E  C  W  V  N  *  D  D  F  V  F  *  S  *  E  K  K  M  G  G  Q  C  A  H  Q  F  K  S  S  A  S  W  S  L  *  I  L  N  R  W  K  S  M  R  Y  L  I  F  L  T  W  H  L  L  R  L  F  F  S  A  C  I  *  Q  D  T  L  L  S  C  L  R  G  F  K  I  L  I  P  *  S  K  F  T  S  G  G  L  I  Y  Q  K  I  H  *  N  I  S  K  I  C  P  I  L  S  I  L  N  F  L  *  D  T  P  E  G  N  C  T  L  S  K  A  S  F  K  G  L  S  F  *  I  L  T  C  W  K  D  *  G  R  *  Q  S  G  K  V  Q  Y  L  I  L  R  S  W  L  S  S  D  V  L  C  L  R  P  C  Q  L  E  *  S  A  S  *  I  *  R  F  L  N  S  L  T  C  L  M  N  L  S  *  R  C  V  Q  T  N  *  V  L  M  L  G  K  F  H  I  S  V  K  Y  S  I  H  I  G  G  T  V  V  G  W  Y  I  H  *  R  K  R  K  T  I  T  F  L  I  H  L  E  L  *  L  G  P  M  E  G  E  I  H  S  K  S  F  E  G  R  R  A  P  V  S  F  Q  F  L  L  *  I  I  S  L  *  S  F  I  T  S  L  F  L  L  *  *  A  V  Y  I  N  L  L  C  F  L  Y  I  A  R  V  N  L  V  Y  V  I  W  C  N  F  Q  *  F  V  *  K  S  F  V  D  S  Q  S  C  I  L  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44868" stop="45881"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLPRSIGRLKQLEILDLKQTHVTELPVEILKLENLRHLLVYSHVSYSYLPYNCSPGFKAFRGIGALRALQKLVYIEATPGSGILREVGMLGELRRLCILKLRKEDGRTVCSSIQKLRKLESLNLKSVEEHEILDLSYMASPPPLLQRLYLTGHIVKLPAWIQDLNSLVKIYFRWTHLSEDPLKYLQDLPNLVHLEFLVGYTGRELYFEQGKFQRLKLLNFDMLEGLRQVTIGEGAVPHLEKLVIQRCALLETVPTGIECLLNLKVLEFFDMPDEFIMTLRPDKLGADAWKVSHIREVFYTYWRDGCWMVHSLKEKENNHISDPSGAVTRTYGRRNSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45900" stop="46103"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSLLPISVVNNLSLILHHFTFPVVISSVYKFVMFSLHCKSELSVCNMVQLSVICLEEFCGFSELHFA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="48955" PGL_stop="50005"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48955" e_stop="49648"/>
            <exon e_start="49995" e_stop="50005"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.120" e_score="0.991"/>
          <exon-only e_score="0.636"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="48955" e_stop="49648" e_length="694"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.120">
            <gDNA_intron_boundary i_start="49649" i_stop="49994" i_length="346"/>
          </intron>
          <exon e_serial="2" e_score="0.636">
            <gDNA_exon_boundary e_start="49995" e_stop="50005" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48955" stop="49648"/>
              <exon start="49995" stop="50005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48979" stop="49419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282343" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTCAAGCTTTTCTCAATTCTTACTTCATCTTAGCATACGATCGATATGGCTCGTACCAAGCAAACTGCCCGTAAATCAACTGGTGGAAAGGCTCCAAGGAAGCAGCTAGCCACCAAGGCTGCCAGAAAGTCAGTTGCGGCCACCGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACTGTGGCTCTAAGAGAAATCAGGAAATACCAAAAGTCAACCGAGTTGTTGATCAGGAAGCTCCCATTTCAGAGGCTAGTGAGGGAAATTGCTCAGGATTTTAAAACAGATCTGAGGTTTTAGAGCAGTGTTGTGGCTGCTCTACAAGAGGCTGCTGAGGCCTACCTTGTTGGGCTCTTTGAAGATACCAATCTCTGTGCAATCCATGCCAAGAGGGTAACTATCATGCCCAAGGATATTCAGCTTGCTAGGAGGCTTCGTGGAGAAAGGGCTTAGGAGTTTTTGTTGAATGTTAGGATTGGTTATGTAAATCATATTCCTTGATGTGTAAACCTTTGGTTTAGTACTATTCTGGAATCTGATTAATGAAACCTGTAGTTCATTTTGTTTCAGCTAAAGCTGATGCTCATTCTATGATCTGGATTAGAGTAATTTACATTTCCTTCTTTATTGCTTTTGCCTTTTGGTTGTGTAGAGTGTACAGTTCTCATAAGTGTTTCTCTTCTCCAGAAA : AGATAGAAAGA</gDNA_template>
            <first_frame> S  Q  A  F  L  N  S  Y  F  I  L  A  Y  D  R  Y  G  S  Y  Q  A  N  C  P  *  I  N  W  W  K  G  S  K  E  A  A  S  H  Q  G  C  Q  K  V  S  C  G  H  R  R  S  E  E  A  S  P  F  Q  A  R  N  C  G  S  K  R  N  Q  E  I  P  K  V  N  R  V  V  D  Q  E  A  P  I  S  E  A  S  E  G  N  C  S  G  F  *  N  R  S  E  V  L  E  Q  C  C  G  C  S  T  R  G  C  *  G  L  P  C  W  A  L  *  R  Y  Q  S  L  C  N  P  C  Q  E  G  N  Y  H  A  Q  G  Y  S  A  C  *  E  A  S  W  R  K  G  L  G  V  F  V  E  C  *  D  W  L  C  K  S  Y  S  L  M  C  K  P  L  V  *  Y  Y  S  G  I  *  L  M  K  P  V  V  H  F  V  S  A  K  A  D  A  H  S  M  I  W  I  R  V  I  Y  I  S  F  F  I  A  F  A  F  W  L  C  R  V  Y  S  S  H  K  C  F  S  S  P  E   : K  I  E  R </first_frame>
            <second_frame>  V  K  L  F  S  I  L  T  S  S  *  H  T  I  D  M  A  R  T  K  Q  T  A  R  K  S  T  G  G  K  A  P  R  K  Q  L  A  T  K  A  A  R  K  S  V  A  A  T  G  G  V  K  K  P  H  R  F  R  P  G  T  V  A  L  R  E  I  R  K  Y  Q  K  S  T  E  L  L  I  R  K  L  P  F  Q  R  L  V  R  E  I  A  Q  D  F  K  T  D  L  R  F  *  S  S  V  V  A  A  L  Q  E  A  A  E  A  Y  L  V  G  L  F  E  D  T  N  L  C  A  I  H  A  K  R  V  T  I  M  P  K  D  I  Q  L  A  R  R  L  R  G  E  R  A  *  E  F  L  L  N  V  R  I  G  Y  V  N  H  I  P  *  C  V  N  L  W  F  S  T  I  L  E  S  D  *  *  N  L  *  F  I  L  F  Q  L  K  L  M  L  I  L  *  S  G  L  E  *  F  T  F  P  S  L  L  L  L  P  F  G  C  V  E  C  T  V  L  I  S  V  S  L  L  Q  K  :  R  *  K   </second_frame>
            <third_frame>   S  S  F  S  Q  F  L  L  H  L  S  I  R  S  I  W  L  V  P  S  K  L  P  V  N  Q  L  V  E  R  L  Q  G  S  S  *  P  P  R  L  P  E  S  Q  L  R  P  P  E  E  *  R  S  L  T  V  S  G  Q  E  L  W  L  *  E  K  S  G  N  T  K  S  Q  P  S  C  *  S  G  S  S  H  F  R  G  *  *  G  K  L  L  R  I  L  K  Q  I  *  G  F  R  A  V  L  W  L  L  Y  K  R  L  L  R  P  T  L  L  G  S  L  K  I  P  I  S  V  Q  S  M  P  R  G  *  L  S  C  P  R  I  F  S  L  L  G  G  F  V  E  K  G  L  R  S  F  C  *  M  L  G  L  V  M  *  I  I  F  L  D  V  *  T  F  G  L  V  L  F  W  N  L  I  N  E  T  C  S  S  F  C  F  S  *  S  *  C  S  F  Y  D  L  D  *  S  N  L  H  F  L  L  Y  C  F  C  L  L  V  V  *  S  V  Q  F  S  *  V  F  L  F  S  R  K :   D  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48989" stop="49258"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HTIDMARTKQTARKSTGGKAPRKQLATKAARKSVAATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49030" stop="49239"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INWWKGSKEAASHQGCQKVSCGHRRSEEASPFQARNCGSKRNQEIPKVNRVVDQEAPISEASEGNCSGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="49388" PGL_stop="48998"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49388" e_stop="48998"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="49388" e_stop="48998" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49388" stop="48998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCTAGCAAGCTGAATATCCTTGGGCATGATAGTTACCCTCTTGGCATGGATTGCACAGAGATTGGTATCTTCAAAGAGCCCAACAAGGTAGGCCTCAGCAGCCTCTTGTAGAGCAGCCACAACACTGCTCTAAAACCTCAGATCTGTTTTAAAATCCTGAGCAATTTCCCTCACTAGCCTCTGAAATGGGAGCTTCCTGATCAACAACTCGGTTGACTTTTGGTATTTCCTGATTTCTCTTAGAGCCACAGTTCCTGGCCTGAAACGGTGAGGCTTCTTCACTCCTCCGGTGGCCGCAACTGACTTTCTGGCAGCCTTGGTGGCTAGCTGCTTCCTTGGAGCCTTTCCACCAGTTGATTTACGGGCAGTTTGCTTGGTACGAGCCATATC</gDNA_template>
            <first_frame> S  *  Q  A  E  Y  P  W  A  *  *  L  P  S  W  H  G  L  H  R  D  W  Y  L  Q  R  A  Q  Q  G  R  P  Q  Q  P  L  V  E  Q  P  Q  H  C  S  K  T  S  D  L  F  *  N  P  E  Q  F  P  S  L  A  S  E  M  G  A  S  *  S  T  T  R  L  T  F  G  I  S  *  F  L  L  E  P  Q  F  L  A  *  N  G  E  A  S  S  L  L  R  W  P  Q  L  T  F  W  Q  P  W  W  L  A  A  S  L  E  P  F  H  Q  L  I  Y  G  Q  F  A  W  Y  E  P  Y  </first_frame>
            <second_frame>  P  S  K  L  N  I  L  G  H  D  S  Y  P  L  G  M  D  C  T  E  I  G  I  F  K  E  P  N  K  V  G  L  S  S  L  L  *  S  S  H  N  T  A  L  K  P  Q  I  C  F  K  I  L  S  N  F  P  H  *  P  L  K  W  E  L  P  D  Q  Q  L  G  *  L  L  V  F  P  D  F  S  *  S  H  S  S  W  P  E  T  V  R  L  L  H  S  S  G  G  R  N  *  L  S  G  S  L  G  G  *  L  L  P  W  S  L  S  T  S  *  F  T  G  S  L  L  G  T  S  H  I </second_frame>
            <third_frame>   L  A  S  *  I  S  L  G  M  I  V  T  L  L  A  W  I  A  Q  R  L  V  S  S  K  S  P  T  R  *  A  S  A  A  S  C  R  A  A  T  T  L  L  *  N  L  R  S  V  L  K  S  *  A  I  S  L  T  S  L  *  N  G  S  F  L  I  N  N  S  V  D  F  W  Y  F  L  I  S  L  R  A  T  V  P  G  L  K  R  *  G  F  F  T  P  P  V  A  A  T  D  F  L  A  A  L  V  A  S  C  F  L  G  A  F  P  P  V  D  L  R  A  V  C  L  V  R  A  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0323C14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="51177" PGL_stop="50020"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51177" e_stop="50539"/>
            <exon e_start="50151" e_stop="50123"/>
            <exon e_start="50032" e_stop="50020"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.448" e_score="0.912"/>
          <exon-intron don_prob="0.406" acc_prob="0.212" e_score="0.586"/>
          <exon-only e_score="0.615"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="51177" e_stop="50539" e_length="639"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.448">
            <gDNA_intron_boundary i_start="50538" i_stop="50152" i_length="387"/>
          </intron>
          <exon e_serial="2" e_score="0.586">
            <gDNA_exon_boundary e_start="50151" e_stop="50123" e_length="29"/>
          </exon>
          <intron i_serial="2" don_prob="0.406" acc_prob="0.212">
            <gDNA_intron_boundary i_start="50122" i_stop="50033" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="0.615">
            <gDNA_exon_boundary e_start="50032" e_stop="50020" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51177" stop="50701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50764" stop="50539"/>
              <exon start="50151" stop="50123"/>
              <exon start="50032" stop="50020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACGAACCGACACATAGATATAGGGGATCGGAGTGTCACGTACCGACACAAGAGGAATAATGAATATGAGGGATCGGAGTGTCACGTACCGACACCAGAGAATTAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAACGAACATAATTCCCAAATGAGTATGGTGTTGAGGCTTGAGCCCTCATGGATGAACTTGATGGTACTTATTGATGATTATAATACTTGTTGTGGCTACATGTTGAGTTTTATAGTTGATTTACGATAATATTGATATATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTACAGCAAACGTGCCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGAATACTCTTGGTTTAGTCATTTGATTGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATGATAATAATAGTTTTGAATTGT : GTCAGGTGAATATTGAAGATTTGTAGCAA : CAAAGTCAAACAA</gDNA_template>
            <first_frame> H  E  P  T  H  R  Y  R  G  S  E  C  H  V  P  T  Q  E  E  *  *  I  *  G  I  G  V  S  R  T  D  T  R  E  L  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  M  V  L  R  L  E  P  S  W  M  N  L  M  V  L  I  D  D  Y  N  T  C  C  G  Y  M  L  S  F  I  V  D  L  R  *  Y  *  Y  I  L  F  P  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  F  V  E  Y  S  K  R  A  I  V  F  N  S  T  V  I  Q  A  S  L  T  T  S  E  I  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  S  L  D  A  L  N  F  R  H  G  L  A  S  Y  V  F  L  A  F  R  I  L  L  V  *  S  F  D  C  R  C  S  C  D  D  D  F  Q  I  L  G  M  I  I  I  V  L  N  C  :  V  R  *  I  L  K  I  C  S  N :   K  V  K  Q </first_frame>
            <second_frame>  T  N  R  H  I  D  I  G  D  R  S  V  T  Y  R  H  K  R  N  N  E  Y  E  G  S  E  C  H  V  P  T  P  E  N  *  R  *  *  I  L  K  D  V  N  I  L  N  L  T  N  I  I  P  K  *  V  W  C  *  G  L  S  P  H  G  *  T  *  W  Y  L  L  M  I  I  I  L  V  V  A  T  C  *  V  L  *  L  I  Y  D  N  I  D  I  Y  C  S  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  Y  L  W  S  T  A  N  V  P  S  S  S  T  Q  Q  *  F  K  P  V  L  L  H  R  K  F  R  V  S  *  C  F  *  L  G  L  D  L  L  L  Q  V  L  M  P  *  T  S  G  M  D  *  L  L  M  Y  F  *  L  L  E  Y  S  W  F  S  H  L  I  V  D  V  L  V  M  M  T  S  R  F  W  G  *  *  *  *  F  *  I  V :   S  G  E  Y  *  R  F  V  A   : T  K  S  N   </second_frame>
            <third_frame>   R  T  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  I  M  N  M  R  D  R  S  V  T  Y  R  H  Q  R  I  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  R  T  *  F  P  N  E  Y  G  V  E  A  *  A  L  M  D  E  L  D  G  T  Y  *  *  L  *  Y  L  L  W  L  H  V  E  F  Y  S  *  F  T  I  I  L  I  Y  T  V  P  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  F  I  C  G  V  Q  Q  T  C  H  R  L  Q  L  N  S  N  S  S  Q  S  Y  Y  I  G  N  S  G  *  A  N  A  S  S  L  D  W  I  F  F  F  K  S  *  C  L  E  L  P  A  W  T  S  F  L  C  I  F  S  F  *  N  T  L  G  L  V  I  *  L  *  M  F  L  *  *  *  L  P  D  F  G  D  D  N  N  S  F  E  L   : C  Q  V  N  I  E  D  L  *  Q  :  Q  S  Q  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50898" stop="50611"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YILFPILSWPMISTQYPCFVLTPTFMFSSCLFVEYSKRAIVFNSTVIQASLTTSEIQGELMLLAWTGSSSSSLDALNFRHGLASYVFLAFRILLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="52948" PGL_stop="53124"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52948" e_stop="53124"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="52948" e_stop="53124" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52948" stop="53124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATCAATGCTTGAGTGATAGTTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  G  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  D  H  Q  T  L  S  H  T  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  G  H  I  N  A  *  V  I  V  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  T  T  K  L  Y  H  T  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0323C14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="54429" PGL_stop="57138"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54429" e_stop="57138"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="54429" e_stop="57138" e_length="2710"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54429" stop="55141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54429" stop="55024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54429" stop="54954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54500" stop="55179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54500" stop="54858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55018" stop="55779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55018" stop="55678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55628" stop="56186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55632" stop="56395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55712" stop="56501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55714" stop="56247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55788" stop="56485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56349" stop="57067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56352" stop="57014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56707" stop="57138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTATATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACGCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGCTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACGCACGAACTACTGAAACCGACTCAATCGTAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCCTAGCACAAAGAAAGGAGACGATGCGGACCGGATTGGGAGTGTAGTCACCATCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAATCATACCCAGAATCACGTCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTGGAGACACGAATGGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGGTGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCAACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTTTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAAATCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCGATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGCAGTAGCTCGTGACAGTCAACTAGAAAATCATAAGCATCCTCAAATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCTATTGTACTTCCGGAGCCTGAGGTGCTGGTGCAGAGAACACTGGGGGTGTCTGGCCTTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCGTTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGGGGAGTCACTGCCCTAGTATCAGATGGTCTAGGTGCTTGTCCTCTCCCTCTAGAGGACGTCCTCCCACAACCTCTTCCACGGCCCCTTGCCGTTGTTCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  G  S  Y  P  I  L  H  C  L  Y  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  R  I  *  P  K  R  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  G  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  I  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  V  Q  *  L  L  K  L  C  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  G  F  K  I  N  T  E  V  N  I  P  I  R  W  H  T  R  K  I  C  R  E  H  I  Q  K  R  T  N  Y  *  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  P  S  T  K  K  G  D  D  A  D  R  I  G  S  V  V  T  I  P  H  *  R  V  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  C  K  L  R  R  K  P  N  H  T  Q  N  H  V  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  Y  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  G  D  T  N  G  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  R  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  R  L  S  V  A  P  T  M  L  W  C  S  G  P  S  L  P  I  T  S  A  V  L  V  T  T  I  T  S  T  T  T  P  S  R  K  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  V  T  W  S  G  T  I  S  P  N  M  S  N  L  P  T  S  I  T  F  F  G  V  D  H  M  P  L  G  E  V  L  T  G  L  R  W  S  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  S  S  V  R  T  I  K  I  T  S  L  S  K  P  F  *  C  R  C  C  G  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  L  L  E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  A  N  P  L  L  R  T  E  T  E  L  S  G  I  S  G  *  C  T  K  L  S  L  I  S  I  N  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  T  R  E  *  G  P  S  H  R  W  C  L  Y  W  L  T  L  D  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  P  F  Y  Y  T  H  L  V  Q  *  L  V  T  V  N  *  K  I  I  S  I  L  K  F  R  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  Y  C  T  S  G  A  *  G  A  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  V  S  S  F  C  T  C  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  C  P  L  P  L  E  D  V  L  P  Q  P  L  P  R  P  L  A  V  V  L  </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  Y  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  A  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  A  R  T  T  E  T  D  S  I  V  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  I  I  F  L  A  Q  R  K  E  T  M  R  T  G  L  G  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  I  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  M  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  G  V  V  A  P  V  C  P  L  P  L  P  F  W  *  P  L  L  P  Q  P  P  R  P  P  E  K  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  G  L  G  Q  F  L  L  I  C  P  I  S  P  H  P  *  H  S  L  E  S  I  I  C  P  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  L  P  E  P  C  P  L  V  *  E  P  L  K  S  P  P  F  R  S  L  F  D  V  D  V  V  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  R  I  R  S  *  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  *  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  R  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  I  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  N  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  K  R  G  N  V  P  I  S  N  G  T  S  M  R  G  A  I  V  A  A  I  V  L  P  E  P  E  V  L  V  Q  R  T  L  G  V  S  G  L  D  Q  T  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  F  P  H  F  A  L  V  Q  F  P  H  P  P  L  L  L  L  L  P  Q  S  V  G  E  S  L  P  *  Y  Q  M  V  *  V  L  V  L  S  L  *  R  T  S  S  H  N  L  F  H  G  P  L  P  L  F  F </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  W  V  L  P  N  S  S  L  S  I  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  P  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  R  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  N  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  E  A  V  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  R  V  Q  D  Q  Y  R  S  Q  Y  P  Y  P  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  E  L  L  K  P  T  Q  S  *  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  S  F  S  *  H  K  E  R  R  R  C  G  P  D  W  E  C  S  H  H  P  T  L  T  G  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  L  Q  I  A  E  K  A  K  S  Y  P  E  S  R  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  L  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  W  R  H  E  W  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  T  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  S  S  V  R  C  P  Y  H  V  V  V  *  W  P  Q  F  A  H  Y  L  C  R  F  G  D  H  Y  Y  L  N  H  H  A  L  Q  K  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  C  N  L  V  W  D  N  F  S  *  Y  V  Q  S  P  H  I  H  N  I  L  W  S  R  S  Y  A  P  R  R  S  V  D  R  S  E  V  V  P  Q  L  Q  F  V  V  K  T  E  L  V  G  L  S  N  F  P  N  P  V  L  *  C  K  N  H  *  N  H  L  P  F  E  A  F  L  M  S  M  L  W  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  P  L  G  R  I  L  P  L  P  L  S  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  G  E  S  A  L  E  D  *  N  R  V  E  W  H  I  W  I  V  H  E  T  *  P  H  K  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  D  P  S  K  S  G  G  Y  T  S  P  *  T  N  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  R  H  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  Q  T  V  L  L  Y  P  S  C  A  V  A  R  D  S  Q  L  E  N  H  K  H  P  Q  I  P  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  N  V  E  T  C  L  F  P  M  E  H  P  C  G  E  P  *  *  P  L  L  Y  F  R  S  L  R  C  W  C  R  E  H  W  G  C  L  A  L  I  R  Q  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  R  F  L  I  L  H  L  F  S  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  G  S  H  C  P  S  I  R  W  S  R  C  L  S  S  P  S  R  G  R  P  P  T  T  S  S  T  A  P  C  R  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55686" stop="56114"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRYIRKRGSRIKQYRSHAITNQKITCDDSIRCLRFRPPRESVTMGPIVRLSVAPTMLWCSGPSLPITSAVLVTTITSTTTPSRKTASTMTTSTSSYWGSVTWSGTISPNMSNLPTSITFFGVDHMPLGEVLTGLRWSPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56843" stop="57136"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLLYFRSLRCWCREHWGCLALIRQPAKISQNLIDHLWGRLGWRFLILHLFSFPILPFSYYFLSRWGSHCPSIRWSRCLSSPSRGRPPTTSSTAPCRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55156" stop="55401"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNTSRNARTTETDSIVGTWVVSSLRCAKKAKHPLLIIFLAQRKETMRTGLGV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54693" stop="54932"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNPVHQAHERSRGIRKTKGHHYKFVMPIPRSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56170" stop="56364"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLKSPPFRSLFDVDVVVKSSGFTPSTSITKSTTSWKDFAVAAICKAEIRNSDLNPFTNRRIRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="54429" e_stop="55511"/>
            <exon e_start="56256" e_stop="57138"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.106" acc_prob="0.000" e_score="0.928"/>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="54429" e_stop="55511" e_length="1083"/>
          </exon>
          <intron i_serial="1" don_prob="0.106" acc_prob="0.000">
            <gDNA_intron_boundary i_start="55512" i_stop="56255" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.940">
            <gDNA_exon_boundary e_start="56256" e_stop="57138" e_length="883"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54429" stop="55141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54429" stop="55024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54429" stop="54954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54500" stop="55179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54500" stop="54858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55001" stop="55511"/>
              <exon start="56256" stop="56445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56349" stop="57067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56352" stop="57014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56707" stop="57138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTATATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACGCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGCTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACGCACGAACTACTGAAACCGACTCAATCGTAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCCTAGCACAAAGAAAGGAGACGATGCGGACCGGATTGGGAGTGTAGTCACCATCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAATCATACCCAGAATCAC : CACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCGATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGCAGTAGCTCGTGACAGTCAACTAGAAAATCATAAGCATCCTCAAATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCTATTGTACTTCCGGAGCCTGAGGTGCTGGTGCAGAGAACACTGGGGGTGTCTGGCCTTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCGTTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGGGGAGTCACTGCCCTAGTATCAGATGGTCTAGGTGCTTGTCCTCTCCCTCTAGAGGACGTCCTCCCACAACCTCTTCCACGGCCCCTTGCCGTTGTTCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  G  S  Y  P  I  L  H  C  L  Y  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  R  I  *  P  K  R  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  G  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  I  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  V  Q  *  L  L  K  L  C  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  G  F  K  I  N  T  E  V  N  I  P  I  R  W  H  T  R  K  I  C  R  E  H  I  Q  K  R  T  N  Y  *  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  P  S  T  K  K  G  D  D  A  D  R  I  G  S  V  V  T  I  P  H  *  R  V  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  C  K  L  R  R  K  P  N  H  T  Q  N  H  :  H  K  V  Y  H  L  L  E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  A  N  P  L  L  R  T  E  T  E  L  S  G  I  S  G  *  C  T  K  L  S  L  I  S  I  N  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  T  R  E  *  G  P  S  H  R  W  C  L  Y  W  L  T  L  D  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  P  F  Y  Y  T  H  L  V  Q  *  L  V  T  V  N  *  K  I  I  S  I  L  K  F  R  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  Y  C  T  S  G  A  *  G  A  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  V  S  S  F  C  T  C  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  C  P  L  P  L  E  D  V  L  P  Q  P  L  P  R  P  L  A  V  V  L  </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  Y  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  A  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  A  R  T  T  E  T  D  S  I  V  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  I  I  F  L  A  Q  R  K  E  T  M  R  T  G  L  G  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  I  I  P  R  I  T :   T  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  R  I  R  S  *  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  *  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  R  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  I  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  N  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  K  R  G  N  V  P  I  S  N  G  T  S  M  R  G  A  I  V  A  A  I  V  L  P  E  P  E  V  L  V  Q  R  T  L  G  V  S  G  L  D  Q  T  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  F  P  H  F  A  L  V  Q  F  P  H  P  P  L  L  L  L  L  P  Q  S  V  G  E  S  L  P  *  Y  Q  M  V  *  V  L  V  L  S  L  *  R  T  S  S  H  N  L  F  H  G  P  L  P  L  F  F </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  W  V  L  P  N  S  S  L  S  I  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  P  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  R  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  N  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  E  A  V  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  R  V  Q  D  Q  Y  R  S  Q  Y  P  Y  P  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  E  L  L  K  P  T  Q  S  *  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  S  F  S  *  H  K  E  R  R  R  C  G  P  D  W  E  C  S  H  H  P  T  L  T  G  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  L  Q  I  A  E  K  A  K  S  Y  P  E  S   : P  Q  S  L  P  P  L  G  R  I  L  P  L  P  L  S  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  G  E  S  A  L  E  D  *  N  R  V  E  W  H  I  W  I  V  H  E  T  *  P  H  K  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  D  P  S  K  S  G  G  Y  T  S  P  *  T  N  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  R  H  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  Q  T  V  L  L  Y  P  S  C  A  V  A  R  D  S  Q  L  E  N  H  K  H  P  Q  I  P  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  N  V  E  T  C  L  F  P  M  E  H  P  C  G  E  P  *  *  P  L  L  Y  F  R  S  L  R  C  W  C  R  E  H  W  G  C  L  A  L  I  R  Q  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  R  F  L  I  L  H  L  F  S  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  G  S  H  C  P  S  I  R  W  S  R  C  L  S  S  P  S  R  G  R  P  P  T  T  S  S  T  A  P  C  R  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56843" stop="57136"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLLYFRSLRCWCREHWGCLALIRQPAKISQNLIDHLWGRLGWRFLILHLFSFPILPFSYYFLSRWGSHCPSIRWSRCLSSPSRGRPPTTSSTAPCRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55156" stop="55401"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNTSRNARTTETDSIVGTWVVSSLRCAKKAKHPLLIIFLAQRKETMRTGLGV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54693" stop="54932"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNPVHQAHERSRGIRKTKGHHYKFVMPIPRSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55402" stop="55511"/>
                    <exon start="56256" stop="56364"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPSHTNGSVPGLANVTVLALQSKIANCGESQIIPRITTKSTTSWKDFAVAAICKAEIRNSDLNPFTNRRIRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="57430" PGL_stop="57145"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57430" e_stop="57145"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="57430" e_stop="57145" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57430" stop="57145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAATAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACATCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  R  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  S  L  F  H  S  F  F  R  A  T  T  *  V  Q  L  V  S  R  R  Y  E  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  S  A  R  Q  E  T  T  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  I  G  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  I  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  R  P  D  K  K  Q  L  S  Q  P  L  G  L  W </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  *  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  *  A  I  R  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  A  N  T  N  I  G  Q  T  R  N  N  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57381" stop="57145"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFILSFVLLLESNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQHRPDKKQLSQPLGLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="58222" PGL_stop="57746"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58222" e_stop="57746"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="58222" e_stop="57746" e_length="477"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58222" stop="57746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACGAACCGACACATAGATATAGGGGATCGGAGTGTCACGTACCGACACAAGAGGAATAATGAATATGAGGGATCGGAGTGTCACGTACCGACACCAGAGAATTAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAACGAACATAATTCCCAAATGAGTATGGTGTTGAGGCTTGAGCCCTCATGGATGAACTTGATGGTACTTATTGATGATTATAATACTTGTTGTGGCTACATGTTGAGTTTTATAGTTGATTTACGATAATATTGATATATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTACAGCAAACGTGCCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> H  E  P  T  H  R  Y  R  G  S  E  C  H  V  P  T  Q  E  E  *  *  I  *  G  I  G  V  S  R  T  D  T  R  E  L  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  M  V  L  R  L  E  P  S  W  M  N  L  M  V  L  I  D  D  Y  N  T  C  C  G  Y  M  L  S  F  I  V  D  L  R  *  Y  *  Y  I  L  F  P  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  F  V  E  Y  S  K  R  A  I  V  F  N  S  T  V  I  Q  A  S  L  T  T  S  E  I  Q  G  E  L  M  L  L  A  W  T </first_frame>
            <second_frame>  T  N  R  H  I  D  I  G  D  R  S  V  T  Y  R  H  K  R  N  N  E  Y  E  G  S  E  C  H  V  P  T  P  E  N  *  R  *  *  I  L  K  D  V  N  I  L  N  L  T  N  I  I  P  K  *  V  W  C  *  G  L  S  P  H  G  *  T  *  W  Y  L  L  M  I  I  I  L  V  V  A  T  C  *  V  L  *  L  I  Y  D  N  I  D  I  Y  C  S  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  Y  L  W  S  T  A  N  V  P  S  S  S  T  Q  Q  *  F  K  P  V  L  L  H  R  K  F  R  V  S  *  C  F  *  L  G   </second_frame>
            <third_frame>   R  T  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  I  M  N  M  R  D  R  S  V  T  Y  R  H  Q  R  I  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  R  T  *  F  P  N  E  Y  G  V  E  A  *  A  L  M  D  E  L  D  G  T  Y  *  *  L  *  Y  L  L  W  L  H  V  E  F  Y  S  *  F  T  I  I  L  I  Y  T  V  P  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  F  I  C  G  V  Q  Q  T  C  H  R  L  Q  L  N  S  N  S  S  Q  S  Y  Y  I  G  N  S  G  *  A  N  A  S  S  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57943" stop="57746"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YILFPILSWPMISTQYPCFVLTPTFMFSSCLFVEYSKRAIVFNSTVIQASLTTSEIQGELMLLAWT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="63585" PGL_stop="62874"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63585" e_stop="62874"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="63585" e_stop="62874" e_length="712"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63585" stop="63100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63584" stop="62874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341740" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAATAGGATTTTAATAATTTTTAGATAAAAAAAAGGGTTCTCTTCACTGTATTTCCTCTTTCCGGCCAGCTCACTGCCGGAGCACCATCTCCCAAAGGCCACCACCACCAAAAAGTTGGCTAGAACAATTCATATTTTTCGGTGAAGCTCCAACCAGCCACTAAATCGCTGCTAAACTCAGCCTCGTTCCTTCACGAACAGCCAACCAAACAGATCCATGTCCTCCTTTCTTCTTCTCTTCTCCGACCAAACATCGCTCAACCCAAACTTCCCTTCTGTTTTCAGCCAACAACACCAGAAAAAACCTCCAAAACCCCCACCAAAAGCCATCGGAAATAACCATTAACTCCGACCATAACGTTGCCAATAGAAAATCCAACCAGATTTAAACCTCACTGGTCCAGCTTCGCAAAGCCACGACGCCAAATTCCGGCGAAACTAGACCCAAAACCCCACCGCCCAGTCCCTTTCTCTCCCCCTTTACGATTTTGTTCATCTTGTAGGTATTCCGGCGAAACTTCGAACTCCGGCAAGCTGCGAACCAACAACACCAAGAACTTGAAATTTCGATGACCCTTCTCTCTTTTTCACATTGTTTGTATAAAGTTATGTTGATTTTTAGATTCCAGATGTTATTGTTACTTCTTGTTGTTTGTTATCAACTTGGGATTTTAAAGTTTATTTTTTGGCACTTGCTTATGTTTCCAGCTT</gDNA_template>
            <first_frame> R  I  G  F  *  *  F  L  D  K  K  K  G  S  L  H  C  I  S  S  F  R  P  A  H  C  R  S  T  I  S  Q  R  P  P  P  P  K  S  W  L  E  Q  F  I  F  F  G  E  A  P  T  S  H  *  I  A  A  K  L  S  L  V  P  S  R  T  A  N  Q  T  D  P  C  P  P  F  F  F  S  S  P  T  K  H  R  S  T  Q  T  S  L  L  F  S  A  N  N  T  R  K  N  L  Q  N  P  H  Q  K  P  S  E  I  T  I  N  S  D  H  N  V  A  N  R  K  S  N  Q  I  *  T  S  L  V  Q  L  R  K  A  T  T  P  N  S  G  E  T  R  P  K  T  P  P  P  S  P  F  L  S  P  F  T  I  L  F  I  L  *  V  F  R  R  N  F  E  L  R  Q  A  A  N  Q  Q  H  Q  E  L  E  I  S  M  T  L  L  S  F  S  H  C  L  Y  K  V  M  L  I  F  R  F  Q  M  L  L  L  L  L  V  V  C  Y  Q  L  G  I  L  K  F  I  F  W  H  L  L  M  F  P  A  </first_frame>
            <second_frame>  E  *  D  F  N  N  F  *  I  K  K  R  V  L  F  T  V  F  P  L  S  G  Q  L  T  A  G  A  P  S  P  K  G  H  H  H  Q  K  V  G  *  N  N  S  Y  F  S  V  K  L  Q  P  A  T  K  S  L  L  N  S  A  S  F  L  H  E  Q  P  T  K  Q  I  H  V  L  L  S  S  S  L  L  R  P  N  I  A  Q  P  K  L  P  F  C  F  Q  P  T  T  P  E  K  T  S  K  T  P  T  K  S  H  R  K  *  P  L  T  P  T  I  T  L  P  I  E  N  P  T  R  F  K  P  H  W  S  S  F  A  K  P  R  R  Q  I  P  A  K  L  D  P  K  P  H  R  P  V  P  F  S  P  P  L  R  F  C  S  S  C  R  Y  S  G  E  T  S  N  S  G  K  L  R  T  N  N  T  K  N  L  K  F  R  *  P  F  S  L  F  H  I  V  C  I  K  L  C  *  F  L  D  S  R  C  Y  C  Y  F  L  L  F  V  I  N  L  G  F  *  S  L  F  F  G  T  C  L  C  F  Q  L </second_frame>
            <third_frame>   N  R  I  L  I  I  F  R  *  K  K  G  F  S  S  L  Y  F  L  F  P  A  S  S  L  P  E  H  H  L  P  K  A  T  T  T  K  K  L  A  R  T  I  H  I  F  R  *  S  S  N  Q  P  L  N  R  C  *  T  Q  P  R  S  F  T  N  S  Q  P  N  R  S  M  S  S  F  L  L  L  F  S  D  Q  T  S  L  N  P  N  F  P  S  V  F  S  Q  Q  H  Q  K  K  P  P  K  P  P  P  K  A  I  G  N  N  H  *  L  R  P  *  R  C  Q  *  K  I  Q  P  D  L  N  L  T  G  P  A  S  Q  S  H  D  A  K  F  R  R  N  *  T  Q  N  P  T  A  Q  S  L  S  L  P  L  Y  D  F  V  H  L  V  G  I  P  A  K  L  R  T  P  A  S  C  E  P  T  T  P  R  T  *  N  F  D  D  P  S  L  F  F  T  L  F  V  *  S  Y  V  D  F  *  I  P  D  V  I  V  T  S  C  C  L  L  S  T  W  D  F  K  V  Y  F  L  A  L  A  Y  V  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63245" stop="63012"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLTPTITLPIENPTRFKPHWSSFAKPRRQIPAKLDPKPHRPVPFSPPLRFCSSCRYSGETSNSGKLRTNNTKNLKFR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63420" stop="63196"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAAKLSLVPSRTANQTDPCPPFFFSSPTKHRSTQTSLLFSANNTRKNLQNPHQKPSEITINSDHNVANRKSNQI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63461" stop="63246"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNSYFSVKLQPATKSLLNSASFLHEQPTKQIHVLLSSSLLRPNIAQPKLPFCFQPTTPEKTSKTPTKSHRK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63081" stop="62875"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFRRNFELRQAANQQHQELEISMTLLSFSHCLYKVMLIFRFQMLLLLLVVCYQLGILKFIFWHLLMFPA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="70265" PGL_stop="69621"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70265" e_stop="69621"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="70265" e_stop="69621" e_length="645"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70265" stop="69621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70254" stop="69641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412629" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCAATAAGCCTTTCACTTTAGCATAAAATTGAAATGGCTCGTACCAAGCAAACTGCCCGCAAATCTACTGGTGGAAAGGCTCCAAGGAAGCAACTGGTCCCCAAGTCTGTTTTCAAGTCAGTTCTAACAAGTGGAAGAGTGAAGAAGCCTCACCGTTTTATGCCAGGAACTGTGGCTCTAAGAGAAATCAGGAAGTACCAGAAATCTACTGAGTTGATGATCAGGAAGTTGCCATTCCAGAGGCTGGTTAGGCAAACTGCTCTGGATTTCAAGAGAGATCTGAGGTTCCAGAGCAGTGCTATGACTATTCTATAAGAGGCTGCTGAGGCTTACCTCGTTGGGCTCTTTGAAGATACCAATCTTTGTGCAATTCACGCAAAGAGGGTTACCATCATGCCCAAGGATATTCAGCTTGCTAGAAGGATTCGCGGAGAAAGGGCTTAGAAATCTTTTTTTATGTTTATGATTAATTTGTGTTTTGTATTGGGGTCTTGTTTACTTCTTCTGTTAAATGCTAGTGTCAATCAAATTATGTAAACCTCTGGTTTAGTTCTATTCTGAGATCTGGTTAATGAAATTTATAGTTCATTTTATTTCAATTGAAGATGCTACCCATACTATAATTCAGAGTATATTTTGAGTTA</gDNA_template>
            <first_frame> I  N  K  P  F  T  L  A  *  N  *  N  G  S  Y  Q  A  N  C  P  Q  I  Y  W  W  K  G  S  K  E  A  T  G  P  Q  V  C  F  Q  V  S  S  N  K  W  K  S  E  E  A  S  P  F  Y  A  R  N  C  G  S  K  R  N  Q  E  V  P  E  I  Y  *  V  D  D  Q  E  V  A  I  P  E  A  G  *  A  N  C  S  G  F  Q  E  R  S  E  V  P  E  Q  C  Y  D  Y  S  I  R  G  C  *  G  L  P  R  W  A  L  *  R  Y  Q  S  L  C  N  S  R  K  E  G  Y  H  H  A  Q  G  Y  S  A  C  *  K  D  S  R  R  K  G  L  E  I  F  F  Y  V  Y  D  *  F  V  F  C  I  G  V  L  F  T  S  S  V  K  C  *  C  Q  S  N  Y  V  N  L  W  F  S  S  I  L  R  S  G  *  *  N  L  *  F  I  L  F  Q  L  K  M  L  P  I  L  *  F  R  V  Y  F  E  L </first_frame>
            <second_frame>  S  I  S  L  S  L  *  H  K  I  E  M  A  R  T  K  Q  T  A  R  K  S  T  G  G  K  A  P  R  K  Q  L  V  P  K  S  V  F  K  S  V  L  T  S  G  R  V  K  K  P  H  R  F  M  P  G  T  V  A  L  R  E  I  R  K  Y  Q  K  S  T  E  L  M  I  R  K  L  P  F  Q  R  L  V  R  Q  T  A  L  D  F  K  R  D  L  R  F  Q  S  S  A  M  T  I  L  *  E  A  A  E  A  Y  L  V  G  L  F  E  D  T  N  L  C  A  I  H  A  K  R  V  T  I  M  P  K  D  I  Q  L  A  R  R  I  R  G  E  R  A  *  K  S  F  F  M  F  M  I  N  L  C  F  V  L  G  S  C  L  L  L  L  L  N  A  S  V  N  Q  I  M  *  T  S  G  L  V  L  F  *  D  L  V  N  E  I  Y  S  S  F  Y  F  N  *  R  C  Y  P  Y  Y  N  S  E  Y  I  L  S   </second_frame>
            <third_frame>   Q  *  A  F  H  F  S  I  K  L  K  W  L  V  P  S  K  L  P  A  N  L  L  V  E  R  L  Q  G  S  N  W  S  P  S  L  F  S  S  Q  F  *  Q  V  E  E  *  R  S  L  T  V  L  C  Q  E  L  W  L  *  E  K  S  G  S  T  R  N  L  L  S  *  *  S  G  S  C  H  S  R  G  W  L  G  K  L  L  W  I  S  R  E  I  *  G  S  R  A  V  L  *  L  F  Y  K  R  L  L  R  L  T  S  L  G  S  L  K  I  P  I  F  V  Q  F  T  Q  R  G  L  P  S  C  P  R  I  F  S  L  L  E  G  F  A  E  K  G  L  R  N  L  F  L  C  L  *  L  I  C  V  L  Y  W  G  L  V  Y  F  F  C  *  M  L  V  S  I  K  L  C  K  P  L  V  *  F  Y  S  E  I  W  L  M  K  F  I  V  H  F  I  S  I  E  D  A  T  H  T  I  I  Q  S  I  F  *  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70243" stop="69950"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HKIEMARTKQTARKSTGGKAPRKQLVPKSVFKSVLTSGRVKKPHRFMPGTVALREIRKYQKSTELMIRKLPFQRLVRQTALDFKRDLRFQSSAMTIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="77998" PGL_stop="75086"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77998" e_stop="77875"/>
            <exon e_start="76460" e_stop="76449"/>
            <exon e_start="75649" e_stop="75086"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.772" e_score="0.895"/>
          <exon-intron don_prob="0.000" acc_prob="0.693" e_score="0.583"/>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.895">
            <gDNA_exon_boundary e_start="77998" e_stop="77875" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.772">
            <gDNA_intron_boundary i_start="77874" i_stop="76461" i_length="1414"/>
          </intron>
          <exon e_serial="2" e_score="0.583">
            <gDNA_exon_boundary e_start="76460" e_stop="76449" e_length="12"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.693">
            <gDNA_intron_boundary i_start="76448" i_stop="75650" i_length="799"/>
          </intron>
          <exon e_serial="3" e_score="0.902">
            <gDNA_exon_boundary e_start="75649" e_stop="75086" e_length="564"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77998" stop="77875"/>
              <exon start="76460" stop="76449"/>
              <exon start="75649" stop="75086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346281" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATATAATATTTTAAATTCCAGTGTTCCCTTATTTAGTCTTTGGAAATTAGATTTGGAGCTTCAAAATTCAATTTTCAACTTTCCACGTTCGGCTTTCGGCGGTCATAAACGTCTACTTTTCG : AGATGACGTACG : AACCTACTGAAGATATTCTCCAATGGTGGAGAAATCGCGGCAAAGGATTTCCAAAACTAGTACCGATGGCTCGAGATATATTAGCAATGCAAGCGTCGTCGGTAGCTTCGGAAGGCGTCTTTAGTACATCAAGGTTCAACTTGGAGAACATAGGCATTCGCTAGCAGCCGACAACTTGGAGATATCTGTATTATTTCGATATTGGATTAATGTCGAGAGAAGAAATTTGGGTCGTGAACCACTACCGACCAAATTTCAAGATGACGTTGATGAAGTAATGCAGGATTATAGTTACAACGGGATTGAAGCAATGGAAGATCTTTTTATTCAACCAATTCCCGAACATGTTACTAAAGAAATTTTGAATGATTTATGAAGGGATTTATATGGTGGCACCAACTATTAGTAAAAGTATGATAATTCAAGATTTAATTCAAACAGAACTCTTCCTAGAAGGTGGTTGTGTAGATTAAATCTTTTAATACTTTATTAATATTTTTGTAAATGTAATTATAATATCAAATAAATATTAATAAAGATTGCTATTCGCCTTAATTTGTTTTT</gDNA_template>
            <first_frame> I  Y  N  I  L  N  S  S  V  P  L  F  S  L  W  K  L  D  L  E  L  Q  N  S  I  F  N  F  P  R  S  A  F  G  G  H  K  R  L  L  F   : E  M  T  Y   : E  P  T  E  D  I  L  Q  W  W  R  N  R  G  K  G  F  P  K  L  V  P  M  A  R  D  I  L  A  M  Q  A  S  S  V  A  S  E  G  V  F  S  T  S  R  F  N  L  E  N  I  G  I  R  *  Q  P  T  T  W  R  Y  L  Y  Y  F  D  I  G  L  M  S  R  E  E  I  W  V  V  N  H  Y  R  P  N  F  K  M  T  L  M  K  *  C  R  I  I  V  T  T  G  L  K  Q  W  K  I  F  L  F  N  Q  F  P  N  M  L  L  K  K  F  *  M  I  Y  E  G  I  Y  M  V  A  P  T  I  S  K  S  M  I  I  Q  D  L  I  Q  T  E  L  F  L  E  G  G  C  V  D  *  I  F  *  Y  F  I  N  I  F  V  N  V  I  I  I  S  N  K  Y  *  *  R  L  L  F  A  L  I  C  F  </first_frame>
            <second_frame>  Y  I  I  F  *  I  P  V  F  P  Y  L  V  F  G  N  *  I  W  S  F  K  I  Q  F  S  T  F  H  V  R  L  S  A  V  I  N  V  Y  F  S  :  R  *  R  T  :  N  L  L  K  I  F  S  N  G  G  E  I  A  A  K  D  F  Q  N  *  Y  R  W  L  E  I  Y  *  Q  C  K  R  R  R  *  L  R  K  A  S  L  V  H  Q  G  S  T  W  R  T  *  A  F  A  S  S  R  Q  L  G  D  I  C  I  I  S  I  L  D  *  C  R  E  K  K  F  G  S  *  T  T  T  D  Q  I  S  R  *  R  *  *  S  N  A  G  L  *  L  Q  R  D  *  S  N  G  R  S  F  Y  S  T  N  S  R  T  C  Y  *  R  N  F  E  *  F  M  K  G  F  I  W  W  H  Q  L  L  V  K  V  *  *  F  K  I  *  F  K  Q  N  S  S  *  K  V  V  V  *  I  K  S  F  N  T  L  L  I  F  L  *  M  *  L  *  Y  Q  I  N  I  N  K  D  C  Y  S  P  *  F  V  F </second_frame>
            <third_frame>   I  *  Y  F  K  F  Q  C  S  L  I  *  S  L  E  I  R  F  G  A  S  K  F  N  F  Q  L  S  T  F  G  F  R  R  S  *  T  S  T  F  R :   D  D  V  R :   T  Y  *  R  Y  S  P  M  V  E  K  S  R  Q  R  I  S  K  T  S  T  D  G  S  R  Y  I  S  N  A  S  V  V  G  S  F  G  R  R  L  *  Y  I  K  V  Q  L  G  E  H  R  H  S  L  A  A  D  N  L  E  I  S  V  L  F  R  Y  W  I  N  V  E  R  R  N  L  G  R  E  P  L  P  T  K  F  Q  D  D  V  D  E  V  M  Q  D  Y  S  Y  N  G  I  E  A  M  E  D  L  F  I  Q  P  I  P  E  H  V  T  K  E  I  L  N  D  L  *  R  D  L  Y  G  G  T  N  Y  *  *  K  Y  D  N  S  R  F  N  S  N  R  T  L  P  R  R  W  L  C  R  L  N  L  L  I  L  Y  *  Y  F  C  K  C  N  Y  N  I  K  *  I  L  I  K  I  A  I  R  L  N  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77998" stop="77875"/>
                    <exon start="76460" stop="76449"/>
                    <exon start="75649" stop="75486"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYNILNSSVPLFSLWKLDLELQNSIFNFPRSAFGGHKRLLFEMTYEPTEDILQWWRNRGKGFPKLVPMARDILAMQASSVASEGVFSTSRFNLENIGIR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75525" stop="75274"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YIKVQLGEHRHSLAADNLEISVLFRYWINVERRNLGREPLPTKFQDDVDEVMQDYSYNGIEAMEDLFIQPIPEHVTKEILNDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="82139" PGL_stop="85806"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82139" e_stop="82165"/>
            <exon e_start="82666" e_stop="82885"/>
            <exon e_start="84016" e_stop="84077"/>
            <exon e_start="84518" e_stop="84707"/>
            <exon e_start="84931" e_stop="85068"/>
            <exon e_start="85163" e_stop="85319"/>
            <exon e_start="85415" e_stop="85608"/>
            <exon e_start="85753" e_stop="85806"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="0.926"/>
          <exon-intron don_prob="0.979" acc_prob="0.851" e_score="0.950"/>
          <exon-intron don_prob="1.000" acc_prob="0.874" e_score="0.984"/>
          <exon-intron don_prob="0.968" acc_prob="0.608" e_score="0.958"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.000" e_score="0.962"/>
          <exon-intron don_prob="0.112" acc_prob="0.827" e_score="0.969"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="82139" e_stop="82165" e_length="27"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82166" i_stop="82665" i_length="500"/>
          </intron>
          <exon e_serial="2" e_score="0.950">
            <gDNA_exon_boundary e_start="82666" e_stop="82885" e_length="220"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.851">
            <gDNA_intron_boundary i_start="82886" i_stop="84015" i_length="1130"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="84016" e_stop="84077" e_length="62"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.874">
            <gDNA_intron_boundary i_start="84078" i_stop="84517" i_length="440"/>
          </intron>
          <exon e_serial="4" e_score="0.958">
            <gDNA_exon_boundary e_start="84518" e_stop="84707" e_length="190"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.608">
            <gDNA_intron_boundary i_start="84708" i_stop="84930" i_length="223"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84931" e_stop="85068" e_length="138"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="85069" i_stop="85162" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="0.962">
            <gDNA_exon_boundary e_start="85163" e_stop="85319" e_length="157"/>
          </exon>
          <intron i_serial="6" don_prob="0.971" acc_prob="0.000">
            <gDNA_intron_boundary i_start="85320" i_stop="85414" i_length="95"/>
          </intron>
          <exon e_serial="7" e_score="0.969">
            <gDNA_exon_boundary e_start="85415" e_stop="85608" e_length="194"/>
          </exon>
          <intron i_serial="7" don_prob="0.112" acc_prob="0.827">
            <gDNA_intron_boundary i_start="85609" i_stop="85752" i_length="144"/>
          </intron>
          <exon e_serial="8" e_score="0.981">
            <gDNA_exon_boundary e_start="85753" e_stop="85806" e_length="54"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82139" stop="82165"/>
              <exon start="82666" stop="82885"/>
              <exon start="84016" stop="84077"/>
              <exon start="84518" stop="84622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82139" stop="82165"/>
              <exon start="82666" stop="82885"/>
              <exon start="84016" stop="84077"/>
              <exon start="84518" stop="84621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82666" stop="82885"/>
              <exon start="84016" stop="84077"/>
              <exon start="84518" stop="84707"/>
              <exon start="84931" stop="84953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84579" stop="84707"/>
              <exon start="84931" stop="85068"/>
              <exon start="85163" stop="85319"/>
              <exon start="85415" stop="85608"/>
              <exon start="85753" stop="85806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423687" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84667" stop="84707"/>
              <exon start="84931" stop="85068"/>
              <exon start="85163" stop="85319"/>
              <exon start="85415" stop="85608"/>
              <exon start="85753" stop="85806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451042" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTCTCTCTCCGACGAAGTCAATTT : GGGATAAGAATGGCCGGGAAGTCAAACAAAGGGAAGAATCGGAAGGCAGTTCAAAATGCTACTAGTTCTTCAGAGCAAGCAGCGCCACCTGATGCTAATGTGAATGATACTGCAACACATGCGGAGTCTAATGGAACCACAGCTGTGACTGCTCAAGCTGATACGAAAACAGAAGCAAAAGAATCTGGAAATGAGACCTCCACACAGGAGGCAAAGCAAG : GTGACATCCATCTTTATCCTGTTTCTGTCAAAACCCAAGGAGGGGATAAGCTAGAACTACAG : TTGAGTCCTGGTGATTCTGTTATGGATGTGCGGCAGTTTCTTCTTGATGCTCCAGAGACATGCTTCGTTACATGCTATGATCTATCATTGCACATAAAGGACGGATCTGTTCATCATCTAGAAGATTATAACGAAATCTCTGAAGTAGCTGATATCACCACAGGAGATTGCTTCCTGGAGATGGTGCCAG : CATTGTATGATGATCGATCCATAAGGGCTCATGTTCACCGCACTCGAGAATTGCTCTCTCTTTCCACATTGCACTCCTCACTATCAACGTCACTTGCACTGCAGCATGAAATCGGAAGTAATGTTGCGAAATCTGGAG : AGCCTGTGAAGGCCGATGTACCAGAACTTGAAAACTTGGGTTTTGTGGAGGATGTTTCTGGTTCAGTCTATAGTTTGCTGTCGGTACCTTCAAAGGAAATTAAATGTGTCGAAAGCATTGTGTTCTCTTCGTTTAATCCTCCTCCTAGCTACAGAAG : GCTCTCCGGGGACTTGATTTATCTGGATGTAGTCACACTAGAAGGAAATAAGTATTGTATTACTGGAACAACCAAAGCTTTTTATGTCAATTCCAGCACCACAACTGTTCTTGATCCTAGGCCAAATAAAACTGGTACAGAAGCAACTACTCTTATTGGGCTCTTGCAAAAGATCAGCTCCAGATTTAAGAAAG : CTTTTCGTGAGATATTGGAGCGGAAGGCTTCTGCACATCCTTTTGAAAATGTTC</gDNA_template>
            <first_frame> F  F  S  L  R  R  S  Q  F  :  G  I  R  M  A  G  K  S  N  K  G  K  N  R  K  A  V  Q  N  A  T  S  S  S  E  Q  A  A  P  P  D  A  N  V  N  D  T  A  T  H  A  E  S  N  G  T  T  A  V  T  A  Q  A  D  T  K  T  E  A  K  E  S  G  N  E  T  S  T  Q  E  A  K  Q   : G  D  I  H  L  Y  P  V  S  V  K  T  Q  G  G  D  K  L  E  L  Q  :  L  S  P  G  D  S  V  M  D  V  R  Q  F  L  L  D  A  P  E  T  C  F  V  T  C  Y  D  L  S  L  H  I  K  D  G  S  V  H  H  L  E  D  Y  N  E  I  S  E  V  A  D  I  T  T  G  D  C  F  L  E  M  V  P   : A  L  Y  D  D  R  S  I  R  A  H  V  H  R  T  R  E  L  L  S  L  S  T  L  H  S  S  L  S  T  S  L  A  L  Q  H  E  I  G  S  N  V  A  K  S  G   : E  P  V  K  A  D  V  P  E  L  E  N  L  G  F  V  E  D  V  S  G  S  V  Y  S  L  L  S  V  P  S  K  E  I  K  C  V  E  S  I  V  F  S  S  F  N  P  P  P  S  Y  R  R :   L  S  G  D  L  I  Y  L  D  V  V  T  L  E  G  N  K  Y  C  I  T  G  T  T  K  A  F  Y  V  N  S  S  T  T  T  V  L  D  P  R  P  N  K  T  G  T  E  A  T  T  L  I  G  L  L  Q  K  I  S  S  R  F  K  K   : A  F  R  E  I  L  E  R  K  A  S  A  H  P  F  E  N  V  </first_frame>
            <second_frame>  F  S  L  S  D  E  V  N  L :   G  *  E  W  P  G  S  Q  T  K  G  R  I  G  R  Q  F  K  M  L  L  V  L  Q  S  K  Q  R  H  L  M  L  M  *  M  I  L  Q  H  M  R  S  L  M  E  P  Q  L  *  L  L  K  L  I  R  K  Q  K  Q  K  N  L  E  M  R  P  P  H  R  R  Q  S  K  :  V  T  S  I  F  I  L  F  L  S  K  P  K  E  G  I  S  *  N  Y  S :   *  V  L  V  I  L  L  W  M  C  G  S  F  F  L  M  L  Q  R  H  A  S  L  H  A  M  I  Y  H  C  T  *  R  T  D  L  F  I  I  *  K  I  I  T  K  S  L  K  *  L  I  S  P  Q  E  I  A  S  W  R  W  C  Q  :  H  C  M  M  I  D  P  *  G  L  M  F  T  A  L  E  N  C  S  L  F  P  H  C  T  P  H  Y  Q  R  H  L  H  C  S  M  K  S  E  V  M  L  R  N  L  E  :  S  L  *  R  P  M  Y  Q  N  L  K  T  W  V  L  W  R  M  F  L  V  Q  S  I  V  C  C  R  Y  L  Q  R  K  L  N  V  S  K  A  L  C  S  L  R  L  I  L  L  L  A  T  E   : G  S  P  G  T  *  F  I  W  M  *  S  H  *  K  E  I  S  I  V  L  L  E  Q  P  K  L  F  M  S  I  P  A  P  Q  L  F  L  I  L  G  Q  I  K  L  V  Q  K  Q  L  L  L  L  G  S  C  K  R  S  A  P  D  L  R  K  :  L  F  V  R  Y  W  S  G  R  L  L  H  I  L  L  K  M  F </second_frame>
            <third_frame>   F  L  S  P  T  K  S  I   : W  D  K  N  G  R  E  V  K  Q  R  E  E  S  E  G  S  S  K  C  Y  *  F  F  R  A  S  S  A  T  *  C  *  C  E  *  Y  C  N  T  C  G  V  *  W  N  H  S  C  D  C  S  S  *  Y  E  N  R  S  K  R  I  W  K  *  D  L  H  T  G  G  K  A  R :   *  H  P  S  L  S  C  F  C  Q  N  P  R  R  G  *  A  R  T  T   : V  E  S  W  *  F  C  Y  G  C  A  A  V  S  S  *  C  S  R  D  M  L  R  Y  M  L  *  S  I  I  A  H  K  G  R  I  C  S  S  S  R  R  L  *  R  N  L  *  S  S  *  Y  H  H  R  R  L  L  P  G  D  G  A  S :   I  V  *  *  S  I  H  K  G  S  C  S  P  H  S  R  I  A  L  S  F  H  I  A  L  L  T  I  N  V  T  C  T  A  A  *  N  R  K  *  C  C  E  I  W  R :   A  C  E  G  R  C  T  R  T  *  K  L  G  F  C  G  G  C  F  W  F  S  L  *  F  A  V  G  T  F  K  G  N  *  M  C  R  K  H  C  V  L  F  V  *  S  S  S  *  L  Q  K  :  A  L  R  G  L  D  L  S  G  C  S  H  T  R  R  K  *  V  L  Y  Y  W  N  N  Q  S  F  L  C  Q  F  Q  H  H  N  C  S  *  S  *  A  K  *  N  W  Y  R  S  N  Y  S  Y  W  A  L  A  K  D  Q  L  Q  I  *  E  S :   F  S  *  D  I  G  A  E  G  F  C  T  S  F  *  K  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82139" stop="82165"/>
                    <exon start="82666" stop="82885"/>
                    <exon start="84016" stop="84077"/>
                    <exon start="84518" stop="84707"/>
                    <exon start="84931" stop="85068"/>
                    <exon start="85163" stop="85319"/>
                    <exon start="85415" stop="85608"/>
                    <exon start="85753" stop="85805"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1041</number_coding_nucleotides>
                  <number_encoded_amino_acids>347</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSLRRSQFGIRMAGKSNKGKNRKAVQNATSSSEQAAPPDANVNDTATHAESNGTTAVTAQADTKTEAKESGNETSTQEAKQGDIHLYPVSVKTQGGDKLELQLSPGDSVMDVRQFLLDAPETCFVTCYDLSLHIKDGSVHHLEDYNEISEVADITTGDCFLEMVPALYDDRSIRAHVHRTRELLSLSTLHSSLSTSLALQHEIGSNVAKSGEPVKADVPELENLGFVEDVSGSVYSLLSVPSKEIKCVESIVFSSFNPPPSYRRLSGDLIYLDVVTLEGNKYCITGTTKAFYVNSSTTTVLDPRPNKTGTEATTLIGLLQKISSRFKKAFREILERKASAHPFENV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="88774" PGL_stop="90486"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88774" e_stop="89120"/>
            <exon e_start="89806" e_stop="89910"/>
            <exon e_start="90448" e_stop="90486"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.883" acc_prob="0.972" e_score="0.954"/>
          <exon-intron don_prob="0.753" acc_prob="0.999" e_score="0.971"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="88774" e_stop="89120" e_length="347"/>
          </exon>
          <intron i_serial="1" don_prob="0.883" acc_prob="0.972">
            <gDNA_intron_boundary i_start="89121" i_stop="89805" i_length="685"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="89806" e_stop="89910" e_length="105"/>
          </exon>
          <intron i_serial="2" don_prob="0.753" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89911" i_stop="90447" i_length="537"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90448" e_stop="90486" e_length="39"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88774" stop="89120"/>
              <exon start="89806" stop="89910"/>
              <exon start="90448" stop="90486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598914" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTTGAGCAACTGTCCAAGAAACAGGTGGCTGATTCTAAAGTTGAGGGTACAGGCTTATTACGTAATTTGTCAGAGAAAACCACCAATAATTTGCCACAGGGAGTCTCCGATGTTTCCAATGGAAATGAGCATGTTGGCTCAGTTGTAGAAGCTGCAAACATCATCTTGGATTGTCCTCCTGAAGTGTCCGGTGAAACTCAGTTGACTGAAAGCGAGCAAGCCACTTATGCAAGCGCAAATAATGACTTGAAAGGCACAAAAGCATATCAGGAAGTTGATATCCATGGACTGTACAACCTAGCTATGGCGATAATTGATTATAGAGGACATAGAGTGGTGGCCCAG : AGTGTTTTACCTGGTATCCTTCAAGGTGATAAATCAGATTCCCTCTTATACGGTTCTGTTGATAATGGCAAGAAAATCTGCTGGAGTGACGAGTTCCATTCTAAG : GTGCTAGAAGCTGCAAAACGTCTGCACTTGAAGGAACAT</gDNA_template>
            <first_frame> I  L  S  N  C  P  R  N  R  W  L  I  L  K  L  R  V  Q  A  Y  Y  V  I  C  Q  R  K  P  P  I  I  C  H  R  E  S  P  M  F  P  M  E  M  S  M  L  A  Q  L  *  K  L  Q  T  S  S  W  I  V  L  L  K  C  P  V  K  L  S  *  L  K  A  S  K  P  L  M  Q  A  Q  I  M  T  *  K  A  Q  K  H  I  R  K  L  I  S  M  D  C  T  T  *  L  W  R  *  L  I  I  E  D  I  E  W  W  P  R :   V  F  Y  L  V  S  F  K  V  I  N  Q  I  P  S  Y  T  V  L  L  I  M  A  R  K  S  A  G  V  T  S  S  I  L  R :   C  *  K  L  Q  N  V  C  T  *  R  N   </first_frame>
            <second_frame>  S  *  A  T  V  Q  E  T  G  G  *  F  *  S  *  G  Y  R  L  I  T  *  F  V  R  E  N  H  Q  *  F  A  T  G  S  L  R  C  F  Q  W  K  *  A  C  W  L  S  C  R  S  C  K  H  H  L  G  L  S  S  *  S  V  R  *  N  S  V  D  *  K  R  A  S  H  L  C  K  R  K  *  *  L  E  R  H  K  S  I  S  G  S  *  Y  P  W  T  V  Q  P  S  Y  G  D  N  *  L  *  R  T  *  S  G  G  P   : E  C  F  T  W  Y  P  S  R  *  *  I  R  F  P  L  I  R  F  C  *  *  W  Q  E  N  L  L  E  *  R  V  P  F  *   : G  A  R  S  C  K  T  S  A  L  E  G  T  </second_frame>
            <third_frame>   L  E  Q  L  S  K  K  Q  V  A  D  S  K  V  E  G  T  G  L  L  R  N  L  S  E  K  T  T  N  N  L  P  Q  G  V  S  D  V  S  N  G  N  E  H  V  G  S  V  V  E  A  A  N  I  I  L  D  C  P  P  E  V  S  G  E  T  Q  L  T  E  S  E  Q  A  T  Y  A  S  A  N  N  D  L  K  G  T  K  A  Y  Q  E  V  D  I  H  G  L  Y  N  L  A  M  A  I  I  D  Y  R  G  H  R  V  V  A  Q  :  S  V  L  P  G  I  L  Q  G  D  K  S  D  S  L  L  Y  G  S  V  D  N  G  K  K  I  C  W  S  D  E  F  H  S  K  :  V  L  E  A  A  K  R  L  H  L  K  E  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88776" stop="89120"/>
                    <exon start="89806" stop="89910"/>
                    <exon start="90448" stop="90486"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEQLSKKQVADSKVEGTGLLRNLSEKTTNNLPQGVSDVSNGNEHVGSVVEAANIILDCPPEVSGETQLTESEQATYASANNDLKGTKAYQEVDIHGLYNLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYGSVDNGKKICWSDEFHSKVLEAAKRLHLKEH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="92658" PGL_stop="98412"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92658" e_stop="92735"/>
            <exon e_start="93253" e_stop="93381"/>
            <exon e_start="94175" e_stop="94324"/>
            <exon e_start="94423" e_stop="94491"/>
            <exon e_start="95729" e_stop="95887"/>
            <exon e_start="96037" e_stop="96093"/>
            <exon e_start="96178" e_stop="96218"/>
            <exon e_start="96368" e_stop="96487"/>
            <exon e_start="96627" e_stop="96936"/>
            <exon e_start="97021" e_stop="97200"/>
            <exon e_start="97581" e_stop="98412"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.897"/>
          <exon-intron don_prob="0.307" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="0.980"/>
          <exon-intron don_prob="0.970" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.869" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.897">
            <gDNA_exon_boundary e_start="92658" e_stop="92735" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92736" i_stop="93252" i_length="517"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93253" e_stop="93381" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.307" acc_prob="0.999">
            <gDNA_intron_boundary i_start="93382" i_stop="94174" i_length="793"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="94175" e_stop="94324" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="94325" i_stop="94422" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="94423" e_stop="94491" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="0.996">
            <gDNA_intron_boundary i_start="94492" i_stop="95728" i_length="1237"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="95729" e_stop="95887" e_length="159"/>
          </exon>
          <intron i_serial="5" don_prob="0.960" acc_prob="0.869">
            <gDNA_intron_boundary i_start="95888" i_stop="96036" i_length="149"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="96037" e_stop="96093" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="96094" i_stop="96177" i_length="84"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="96178" e_stop="96218" e_length="41"/>
          </exon>
          <intron i_serial="7" don_prob="0.927" acc_prob="0.999">
            <gDNA_intron_boundary i_start="96219" i_stop="96367" i_length="149"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="96368" e_stop="96487" e_length="120"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.968">
            <gDNA_intron_boundary i_start="96488" i_stop="96626" i_length="139"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="96627" e_stop="96936" e_length="310"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="96937" i_stop="97020" i_length="84"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="97021" e_stop="97200" e_length="180"/>
          </exon>
          <intron i_serial="10" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="97201" i_stop="97580" i_length="380"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="97581" e_stop="98412" e_length="832"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92658" stop="92735"/>
              <exon start="93253" stop="93381"/>
              <exon start="94175" stop="94324"/>
              <exon start="94423" stop="94491"/>
              <exon start="95729" stop="95786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92717" stop="92735"/>
              <exon start="93253" stop="93381"/>
              <exon start="94175" stop="94324"/>
              <exon start="94423" stop="94491"/>
              <exon start="95729" stop="95828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94242" stop="94324"/>
              <exon start="94423" stop="94491"/>
              <exon start="95729" stop="95887"/>
              <exon start="96037" stop="96093"/>
              <exon start="96178" stop="96218"/>
              <exon start="96368" stop="96487"/>
              <exon start="96627" stop="96936"/>
              <exon start="97021" stop="97053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94315" stop="94324"/>
              <exon start="94423" stop="94491"/>
              <exon start="95729" stop="95887"/>
              <exon start="96037" stop="96093"/>
              <exon start="96178" stop="96218"/>
              <exon start="96368" stop="96487"/>
              <exon start="96627" stop="96892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95835" stop="95887"/>
              <exon start="96037" stop="96093"/>
              <exon start="96178" stop="96218"/>
              <exon start="96368" stop="96487"/>
              <exon start="96627" stop="96921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96457" stop="96487"/>
              <exon start="96627" stop="96936"/>
              <exon start="97021" stop="97046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96464" stop="96487"/>
              <exon start="96627" stop="96936"/>
              <exon start="97021" stop="97200"/>
              <exon start="97581" stop="97818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96468" stop="96487"/>
              <exon start="96627" stop="96936"/>
              <exon start="97021" stop="97200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96468" stop="96487"/>
              <exon start="96627" stop="96936"/>
              <exon start="97021" stop="97200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96674" stop="96936"/>
              <exon start="97021" stop="97200"/>
              <exon start="97581" stop="97826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96702" stop="96936"/>
              <exon start="97021" stop="97200"/>
              <exon start="97581" stop="97871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97089" stop="97200"/>
              <exon start="97581" stop="97920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97851" stop="98412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256053" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAACTAGGAACTTGCCTCATTTATGGGATCTTTGTTCCAACGAGATTCTTGTCAGATGTGCAAAGCACATCCTCAAG : GATTTGCTGAGGGATGCTGAGGACCATGATCTTGCAAACACAATCTCACATTTTTACAACTGTTTGTTTGGAAATATGCAAACAGTATCTAATAAAGGCGGCGCCAACAGTTCTAGAAACCAAAAGAAG : GACCACGTTGGGAACCAGCAAAAGTCATCCAAGGGACAGGGAAAGCGAAAAAATGTAGGATCTGCCAAGAAGAAACAGTCCTCCTATTTGAGTATCACGTCTGACAGTTTGTGGTCTGACATCCAAGAATTTGCGAAACTCAAGTATCAG : TTTGAGTTGCCTGACGATGCAAAAATGCTGGTAAAGAAAATTCCAGTTGTACGCAATCTCTGTCAGAAG : GTAGGTGTAACCGTTGCAGCTCGTAAATATGACCTTGACTCTGTTGCACCTTTTCAAGCATCAGATATTATGAATCTCCAACCAGTGGTGAAGCATTCTATCCCAGTTAGTTCAGAAGCTAAGGACCTTGTTGAAACAGGAAAGGCTCAATTAGCTGAG : GGTTTGCTTAGTGAGGCCTACACTTTATTTTCCGAAGCATTCACAATACTTCAGCAG : GTGACGGGTCCGATGCACCGGGAAGTTGCCAATTGTTGTCG : CTACCTTGCTATGGTTCTATATCATGCTGGAGATATGGCTGGTGCTATAATGCAACAGCACAAGGAACTTATCATAAATGAAAGATGCCTTGGACTGGACCATCCTGACACTGCACACAG : TTATGGAAACATGGCTCTTTTCTATCATGGTCTTAACCAAACAGAACTTGCATTGAGGCATATGTCACGGGCCTTGCTTCTTCTTGGCTTGTCATCAGGTCCTGATCATCCGGATGTTGCCGCAACATTTATAAATGTTGCAATGATGTACCAAGATATTGGGAAGATGGATACAGCACTTCGTTATCTCCAAGAAGCATTGAAAAAGAATGAACGGTTGCTTGGGGAGGAACATATTCAGACTGCTGTTTGTTATCATGCTCTGGCAATTGCGTTCAACTGTATGGGTGCTTTCAAGCTTTCGCACCAG : CATGAAAAGAAAACTTATGATATACTAGCCAAACAGCTGGGAGAGGAGGATTCAAGGACACGCGATTCTCAGAACTGGATGAAAACATTTAAGATGCGTGAGCTGCAGATGAATGCACAAAAGCAGAAAGGTCAATCTCTGAATGTGGCTTCTGCACAGAAGGCTTATGATATTTTAAAG : GCTCATCCAAGCTTGTTACACGCATTTCAAGCTGCCGCTGGAGGTACTGGTATTGGTGGAATGAACCAATCATTAAGTTCTGCAGTACTTGGTGATGGGCTTCCTCGGGGAAGAGGAGTTGATGAAAGAGCTGCACGAGCTGCTGCTGAAGTACGGAAAAAAGCTGCAGCAAGGGGTCTTCTTGTACGTCCCAGTGGTGTTCCTGCATCATCTTTACCTCCTCTTACCCAGCTACTCAATGTAATAAATTCTGGCACAACACCGGATGCTGCAAATCCTAGTGGAACTAATGAAGAAAAGAAAGAAGCAAACAGTAATTCTTCTAATGGATCTGGAGATGCCCAAGCAGACTTATCCAAAGCAGGGGAACAAGATCAAACTCCTGTTGGTTTAGGGACAGGTTTGGGGGCGTTGGATACCAAGAAGCAAAAATCAAAAGTGAAAGCTGCATCTTGAAGTGTATATTGCGGAATGTACTAACAAACATGTCAATGGCCAGTTCTAGCATATCATGGATTTTCGCTTGCAGCCACCTCATGCTTCAGGTACTCACTGCACGGGTGAACGCTTATACTTCTATTCCATTCTTACAATAAGTCTCATGGAGATTTAAGTATTCGAGCTGTAGTTCCTCTCATCTTGATTATTATTGCTGAGATGACATAACTTGTAGGCCTAGTTTTGAGAAGATAGGTTTAGTATGCATTATTTTGGTGTTTTGAATAATGTTAAGTAGAGAGGTCCATCATCTGTTTTGGGTGTTGATGTCATCCTAAAATTTTTGACCTTTATTCATTCCCATTACCTCGTGAGTGAAGCTGCCCACCCATTT</gDNA_template>
            <first_frame> G  T  R  N  L  P  H  L  W  D  L  C  S  N  E  I  L  V  R  C  A  K  H  I  L  K  :  D  L  L  R  D  A  E  D  H  D  L  A  N  T  I  S  H  F  Y  N  C  L  F  G  N  M  Q  T  V  S  N  K  G  G  A  N  S  S  R  N  Q  K  K  :  D  H  V  G  N  Q  Q  K  S  S  K  G  Q  G  K  R  K  N  V  G  S  A  K  K  K  Q  S  S  Y  L  S  I  T  S  D  S  L  W  S  D  I  Q  E  F  A  K  L  K  Y  Q  :  F  E  L  P  D  D  A  K  M  L  V  K  K  I  P  V  V  R  N  L  C  Q  K  :  V  G  V  T  V  A  A  R  K  Y  D  L  D  S  V  A  P  F  Q  A  S  D  I  M  N  L  Q  P  V  V  K  H  S  I  P  V  S  S  E  A  K  D  L  V  E  T  G  K  A  Q  L  A  E  :  G  L  L  S  E  A  Y  T  L  F  S  E  A  F  T  I  L  Q  Q  :  V  T  G  P  M  H  R  E  V  A  N  C  C  R :   Y  L  A  M  V  L  Y  H  A  G  D  M  A  G  A  I  M  Q  Q  H  K  E  L  I  I  N  E  R  C  L  G  L  D  H  P  D  T  A  H  S :   Y  G  N  M  A  L  F  Y  H  G  L  N  Q  T  E  L  A  L  R  H  M  S  R  A  L  L  L  L  G  L  S  S  G  P  D  H  P  D  V  A  A  T  F  I  N  V  A  M  M  Y  Q  D  I  G  K  M  D  T  A  L  R  Y  L  Q  E  A  L  K  K  N  E  R  L  L  G  E  E  H  I  Q  T  A  V  C  Y  H  A  L  A  I  A  F  N  C  M  G  A  F  K  L  S  H  Q  :  H  E  K  K  T  Y  D  I  L  A  K  Q  L  G  E  E  D  S  R  T  R  D  S  Q  N  W  M  K  T  F  K  M  R  E  L  Q  M  N  A  Q  K  Q  K  G  Q  S  L  N  V  A  S  A  Q  K  A  Y  D  I  L  K  :  A  H  P  S  L  L  H  A  F  Q  A  A  A  G  G  T  G  I  G  G  M  N  Q  S  L  S  S  A  V  L  G  D  G  L  P  R  G  R  G  V  D  E  R  A  A  R  A  A  A  E  V  R  K  K  A  A  A  R  G  L  L  V  R  P  S  G  V  P  A  S  S  L  P  P  L  T  Q  L  L  N  V  I  N  S  G  T  T  P  D  A  A  N  P  S  G  T  N  E  E  K  K  E  A  N  S  N  S  S  N  G  S  G  D  A  Q  A  D  L  S  K  A  G  E  Q  D  Q  T  P  V  G  L  G  T  G  L  G  A  L  D  T  K  K  Q  K  S  K  V  K  A  A  S  *  S  V  Y  C  G  M  Y  *  Q  T  C  Q  W  P  V  L  A  Y  H  G  F  S  L  A  A  T  S  C  F  R  Y  S  L  H  G  *  T  L  I  L  L  F  H  S  Y  N  K  S  H  G  D  L  S  I  R  A  V  V  P  L  I  L  I  I  I  A  E  M  T  *  L  V  G  L  V  L  R  R  *  V  *  Y  A  L  F  W  C  F  E  *  C  *  V  E  R  S  I  I  C  F  G  C  *  C  H  P  K  I  F  D  L  Y  S  F  P  L  P  R  E  *  S  C  P  P  I  </first_frame>
            <second_frame>  E  L  G  T  C  L  I  Y  G  I  F  V  P  T  R  F  L  S  D  V  Q  S  T  S  S  R :   I  C  *  G  M  L  R  T  M  I  L  Q  T  Q  S  H  I  F  T  T  V  C  L  E  I  C  K  Q  Y  L  I  K  A  A  P  T  V  L  E  T  K  R  R :   T  T  L  G  T  S  K  S  H  P  R  D  R  E  S  E  K  M  *  D  L  P  R  R  N  S  P  P  I  *  V  S  R  L  T  V  C  G  L  T  S  K  N  L  R  N  S  S  I  S :   L  S  C  L  T  M  Q  K  C  W  *  R  K  F  Q  L  Y  A  I  S  V  R  R :   *  V  *  P  L  Q  L  V  N  M  T  L  T  L  L  H  L  F  K  H  Q  I  L  *  I  S  N  Q  W  *  S  I  L  S  Q  L  V  Q  K  L  R  T  L  L  K  Q  E  R  L  N  *  L  R :   V  C  L  V  R  P  T  L  Y  F  P  K  H  S  Q  Y  F  S  R :   *  R  V  R  C  T  G  K  L  P  I  V  V   : A  T  L  L  W  F  Y  I  M  L  E  I  W  L  V  L  *  C  N  S  T  R  N  L  S  *  M  K  D  A  L  D  W  T  I  L  T  L  H  T   : V  M  E  T  W  L  F  S  I  M  V  L  T  K  Q  N  L  H  *  G  I  C  H  G  P  C  F  F  L  A  C  H  Q  V  L  I  I  R  M  L  P  Q  H  L  *  M  L  Q  *  C  T  K  I  L  G  R  W  I  Q  H  F  V  I  S  K  K  H  *  K  R  M  N  G  C  L  G  R  N  I  F  R  L  L  F  V  I  M  L  W  Q  L  R  S  T  V  W  V  L  S  S  F  R  T  S :   M  K  R  K  L  M  I  Y  *  P  N  S  W  E  R  R  I  Q  G  H  A  I  L  R  T  G  *  K  H  L  R  C  V  S  C  R  *  M  H  K  S  R  K  V  N  L  *  M  W  L  L  H  R  R  L  M  I  F  *  R :   L  I  Q  A  C  Y  T  H  F  K  L  P  L  E  V  L  V  L  V  E  *  T  N  H  *  V  L  Q  Y  L  V  M  G  F  L  G  E  E  E  L  M  K  E  L  H  E  L  L  L  K  Y  G  K  K  L  Q  Q  G  V  F  L  Y  V  P  V  V  F  L  H  H  L  Y  L  L  L  P  S  Y  S  M  *  *  I  L  A  Q  H  R  M  L  Q  I  L  V  E  L  M  K  K  R  K  K  Q  T  V  I  L  L  M  D  L  E  M  P  K  Q  T  Y  P  K  Q  G  N  K  I  K  L  L  L  V  *  G  Q  V  W  G  R  W  I  P  R  S  K  N  Q  K  *  K  L  H  L  E  V  Y  I  A  E  C  T  N  K  H  V  N  G  Q  F  *  H  I  M  D  F  R  L  Q  P  P  H  A  S  G  T  H  C  T  G  E  R  L  Y  F  Y  S  I  L  T  I  S  L  M  E  I  *  V  F  E  L  *  F  L  S  S  *  L  L  L  L  R  *  H  N  L  *  A  *  F  *  E  D  R  F  S  M  H  Y  F  G  V  L  N  N  V  K  *  R  G  P  S  S  V  L  G  V  D  V  I  L  K  F  L  T  F  I  H  S  H  Y  L  V  S  E  A  A  H  P  F </second_frame>
            <third_frame>   N  *  E  L  A  S  F  M  G  S  L  F  Q  R  D  S  C  Q  M  C  K  A  H  P  Q   : G  F  A  E  G  C  *  G  P  *  S  C  K  H  N  L  T  F  L  Q  L  F  V  W  K  Y  A  N  S  I  *  *  R  R  R  Q  Q  F  *  K  P  K  E   : G  P  R  W  E  P  A  K  V  I  Q  G  T  G  K  A  K  K  C  R  I  C  Q  E  E  T  V  L  L  F  E  Y  H  V  *  Q  F  V  V  *  H  P  R  I  C  E  T  Q  V  S   : V  *  V  A  *  R  C  K  N  A  G  K  E  N  S  S  C  T  Q  S  L  S  E   : G  R  C  N  R  C  S  S  *  I  *  P  *  L  C  C  T  F  S  S  I  R  Y  Y  E  S  P  T  S  G  E  A  F  Y  P  S  *  F  R  S  *  G  P  C  *  N  R  K  G  S  I  S  *   : G  F  A  *  *  G  L  H  F  I  F  R  S  I  H  N  T  S  A   : G  D  G  S  D  A  P  G  S  C  Q  L  L  S  :  L  P  C  Y  G  S  I  S  C  W  R  Y  G  W  C  Y  N  A  T  A  Q  G  T  Y  H  K  *  K  M  P  W  T  G  P  S  *  H  C  T  Q  :  L  W  K  H  G  S  F  L  S  W  S  *  P  N  R  T  C  I  E  A  Y  V  T  G  L  A  S  S  W  L  V  I  R  S  *  S  S  G  C  C  R  N  I  Y  K  C  C  N  D  V  P  R  Y  W  E  D  G  Y  S  T  S  L  S  P  R  S  I  E  K  E  *  T  V  A  W  G  G  T  Y  S  D  C  C  L  L  S  C  S  G  N  C  V  Q  L  Y  G  C  F  Q  A  F  A  P   : A  *  K  E  N  L  *  Y  T  S  Q  T  A  G  R  G  G  F  K  D  T  R  F  S  E  L  D  E  N  I  *  D  A  *  A  A  D  E  C  T  K  A  E  R  S  I  S  E  C  G  F  C  T  E  G  L  *  Y  F  K   : G  S  S  K  L  V  T  R  I  S  S  C  R  W  R  Y  W  Y  W  W  N  E  P  I  I  K  F  C  S  T  W  *  W  A  S  S  G  K  R  S  *  *  K  S  C  T  S  C  C  *  S  T  E  K  S  C  S  K  G  S  S  C  T  S  Q  W  C  S  C  I  I  F  T  S  S  Y  P  A  T  Q  C  N  K  F  W  H  N  T  G  C  C  K  S  *  W  N  *  *  R  K  E  R  S  K  Q  *  F  F  *  W  I  W  R  C  P  S  R  L  I  Q  S  R  G  T  R  S  N  S  C  W  F  R  D  R  F  G  G  V  G  Y  Q  E  A  K  I  K  S  E  S  C  I  L  K  C  I  L  R  N  V  L  T  N  M  S  M  A  S  S  S  I  S  W  I  F  A  C  S  H  L  M  L  Q  V  L  T  A  R  V  N  A  Y  T  S  I  P  F  L  Q  *  V  S  W  R  F  K  Y  S  S  C  S  S  S  H  L  D  Y  Y  C  *  D  D  I  T  C  R  P  S  F  E  K  I  G  L  V  C  I  I  L  V  F  *  I  M  L  S  R  E  V  H  H  L  F  W  V  L  M  S  S  *  N  F  *  P  L  F  I  P  I  T  S  *  V  K  L  P  T  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92658" stop="92735"/>
                    <exon start="93253" stop="93381"/>
                    <exon start="94175" stop="94324"/>
                    <exon start="94423" stop="94491"/>
                    <exon start="95729" stop="95887"/>
                    <exon start="96037" stop="96093"/>
                    <exon start="96178" stop="96218"/>
                    <exon start="96368" stop="96487"/>
                    <exon start="96627" stop="96936"/>
                    <exon start="97021" stop="97200"/>
                    <exon start="97581" stop="98036"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1746</number_coding_nucleotides>
                  <number_encoded_amino_acids>582</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTRNLPHLWDLCSNEILVRCAKHILKDLLRDAEDHDLANTISHFYNCLFGNMQTVSNKGGANSSRNQKKDHVGNQQKSSKGQGKRKNVGSAKKKQSSYLSITSDSLWSDIQEFAKLKYQFELPDDAKMLVKKIPVVRNLCQKVGVTVAARKYDLDSVAPFQASDIMNLQPVVKHSIPVSSEAKDLVETGKAQLAEGLLSEAYTLFSEAFTILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLGLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILAKQLGEEDSRTRDSQNWMKTFKMRELQMNAQKQKGQSLNVASAQKAYDILKAHPSLLHAFQAAAGGTGIGGMNQSLSSAVLGDGLPRGRGVDERAARAAAEVRKKAAARGLLVRPSGVPASSLPPLTQLLNVINSGTTPDAANPSGTNEEKKEANSNSSNGSGDAQADLSKAGEQDQTPVGLGTGLGALDTKKQKSKVKAAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="97576" e_stop="98412"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="97576" e_stop="98412" e_length="837"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97576" stop="98363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97576" stop="98328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97851" stop="98412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256053" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCAGGCTCATCCAAGCTTGTTACACGCATTTCAAGCTGCCGCTGGAGGTACTGGTATTGGTGGAATGAACCAATCATTAAGTTCTGCAGTACTTGGTGATGGGCTTCCTCGGGGAAGAGGAGTTGATGAAAGAGCTGCACGAGCTGCTGCTGAAGTACGGAAAAAAGCTGCAGCAAGGGGTCTTCTTGTACGTCCCAGTGGTGTTCCTGCATCATCTTTACCTCCTCTTACCCAGCTACTCAATGTAATAAATTCTGGCACAACACCGGATGCTGCAAATCCTAGTGGAACTAATGAAGAAAAGAAAGAAGCAAACAGTAATTCTTCTAATGGATCTGGAGATGCCCAAGCAGACTTATCCAAAGCAGGGGAACAAGATCAAACTCCTGTTGGTTTAGGGACAGGTTTGGGGGCGTTGGATACCAAGAAGCAAAAATCAAAAGTGAAAGCTGCATCTTGAAGTGTATATTGCGGAATGTACTAACAAACATGTCAATGGCCAGTTCTAGCATATCATGGATTTTCGCTTGCAGCCACCTCATGCTTCAGGTACTCACTGCACGGGTGAACGCTTATACTTCTATTCCATTCTTACAATAAGTCTCATGGAGATTTAAGTATTCGAGCTGTAGTTCCTCTCATCTTGATTATTATTGCTGAGATGACATAACTTGTAGGCCTAGTTTTGAGAAGATAGGTTTAGTATGCATTATTTTGGTGTTTTGAATAATGTTAAGTAGAGAGGTCCATCATCTGTTTTGGGTGTTGATGTCATCCTAAAATTTTTGACCTTTATTCATTCCCATTACCTCGTGAGTGAAGCTGCCCACCCATTT</gDNA_template>
            <first_frame> C  R  L  I  Q  A  C  Y  T  H  F  K  L  P  L  E  V  L  V  L  V  E  *  T  N  H  *  V  L  Q  Y  L  V  M  G  F  L  G  E  E  E  L  M  K  E  L  H  E  L  L  L  K  Y  G  K  K  L  Q  Q  G  V  F  L  Y  V  P  V  V  F  L  H  H  L  Y  L  L  L  P  S  Y  S  M  *  *  I  L  A  Q  H  R  M  L  Q  I  L  V  E  L  M  K  K  R  K  K  Q  T  V  I  L  L  M  D  L  E  M  P  K  Q  T  Y  P  K  Q  G  N  K  I  K  L  L  L  V  *  G  Q  V  W  G  R  W  I  P  R  S  K  N  Q  K  *  K  L  H  L  E  V  Y  I  A  E  C  T  N  K  H  V  N  G  Q  F  *  H  I  M  D  F  R  L  Q  P  P  H  A  S  G  T  H  C  T  G  E  R  L  Y  F  Y  S  I  L  T  I  S  L  M  E  I  *  V  F  E  L  *  F  L  S  S  *  L  L  L  L  R  *  H  N  L  *  A  *  F  *  E  D  R  F  S  M  H  Y  F  G  V  L  N  N  V  K  *  R  G  P  S  S  V  L  G  V  D  V  I  L  K  F  L  T  F  I  H  S  H  Y  L  V  S  E  A  A  H  P  F </first_frame>
            <second_frame>  A  G  S  S  K  L  V  T  R  I  S  S  C  R  W  R  Y  W  Y  W  W  N  E  P  I  I  K  F  C  S  T  W  *  W  A  S  S  G  K  R  S  *  *  K  S  C  T  S  C  C  *  S  T  E  K  S  C  S  K  G  S  S  C  T  S  Q  W  C  S  C  I  I  F  T  S  S  Y  P  A  T  Q  C  N  K  F  W  H  N  T  G  C  C  K  S  *  W  N  *  *  R  K  E  R  S  K  Q  *  F  F  *  W  I  W  R  C  P  S  R  L  I  Q  S  R  G  T  R  S  N  S  C  W  F  R  D  R  F  G  G  V  G  Y  Q  E  A  K  I  K  S  E  S  C  I  L  K  C  I  L  R  N  V  L  T  N  M  S  M  A  S  S  S  I  S  W  I  F  A  C  S  H  L  M  L  Q  V  L  T  A  R  V  N  A  Y  T  S  I  P  F  L  Q  *  V  S  W  R  F  K  Y  S  S  C  S  S  S  H  L  D  Y  Y  C  *  D  D  I  T  C  R  P  S  F  E  K  I  G  L  V  C  I  I  L  V  F  *  I  M  L  S  R  E  V  H  H  L  F  W  V  L  M  S  S  *  N  F  *  P  L  F  I  P  I  T  S  *  V  K  L  P  T  H   </second_frame>
            <third_frame>   Q  A  H  P  S  L  L  H  A  F  Q  A  A  A  G  G  T  G  I  G  G  M  N  Q  S  L  S  S  A  V  L  G  D  G  L  P  R  G  R  G  V  D  E  R  A  A  R  A  A  A  E  V  R  K  K  A  A  A  R  G  L  L  V  R  P  S  G  V  P  A  S  S  L  P  P  L  T  Q  L  L  N  V  I  N  S  G  T  T  P  D  A  A  N  P  S  G  T  N  E  E  K  K  E  A  N  S  N  S  S  N  G  S  G  D  A  Q  A  D  L  S  K  A  G  E  Q  D  Q  T  P  V  G  L  G  T  G  L  G  A  L  D  T  K  K  Q  K  S  K  V  K  A  A  S  *  S  V  Y  C  G  M  Y  *  Q  T  C  Q  W  P  V  L  A  Y  H  G  F  S  L  A  A  T  S  C  F  R  Y  S  L  H  G  *  T  L  I  L  L  F  H  S  Y  N  K  S  H  G  D  L  S  I  R  A  V  V  P  L  I  L  I  I  I  A  E  M  T  *  L  V  G  L  V  L  R  R  *  V  *  Y  A  L  F  W  C  F  E  *  C  *  V  E  R  S  I  I  C  F  G  C  *  C  H  P  K  I  F  D  L  Y  S  F  P  L  P  R  E  *  S  C  P  P  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97578" stop="98036"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QAHPSLLHAFQAAAGGTGIGGMNQSLSSAVLGDGLPRGRGVDERAARAAAEVRKKAAARGLLVRPSGVPASSLPPLTQLLNVINSGTTPDAANPSGTNEEKKEANSNSSNGSGDAQADLSKAGEQDQTPVGLGTGLGALDTKKQKSKVKAAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="98528" PGL_stop="98038"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98528" e_stop="98038"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="98528" e_stop="98038" e_length="491"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98528" stop="98038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323857" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGTCACCTTAATACAGAAAAACGCTTTCATTCCAACGATAAATAAGTAACAAAACAGAAAGTCTAACTTTAACCAGAAACGATAAAGTGTCCAAGAAAGAGCACCTTTCAACTGAAATGGGTGGGCAGCTTCACTCACGAGGTAATGGGAATGAATAAAGGTCAAAAATTTTAGGATGACATCAACACCCAAAACAGATGATGGACCTCTCTACTTAACATTATTCAAAACACCAAAATAATGCATACTAAACCTATCTTCTCAAAACTAGGCCTACAAGTTATGTCATCTCAGCAATAATAATCAAGATGAGAGGAACTACAGCTCGAATACTTAAATCTCCATGAGACTTATTGTAAGAATGGAATAGAAGTATAAGCGTTCACCCGTGCAGTGAGTACCTGAAGCATGAGGTGGCTGCAAGCGAAAATCCATGATATGCTAGAACTGGCCATTGACATGTTTGTTAGTACATTCCGCAATATACAC</gDNA_template>
            <first_frame> *  V  T  L  I  Q  K  N  A  F  I  P  T  I  N  K  *  Q  N  R  K  S  N  F  N  Q  K  R  *  S  V  Q  E  R  A  P  F  N  *  N  G  W  A  A  S  L  T  R  *  W  E  *  I  K  V  K  N  F  R  M  T  S  T  P  K  T  D  D  G  P  L  Y  L  T  L  F  K  T  P  K  *  C  I  L  N  L  S  S  Q  N  *  A  Y  K  L  C  H  L  S  N  N  N  Q  D  E  R  N  Y  S  S  N  T  *  I  S  M  R  L  I  V  R  M  E  *  K  Y  K  R  S  P  V  Q  *  V  P  E  A  *  G  G  C  K  R  K  S  M  I  C  *  N  W  P  L  T  C  L  L  V  H  S  A  I  Y   </first_frame>
            <second_frame>  K  S  P  *  Y  R  K  T  L  S  F  Q  R  *  I  S  N  K  T  E  S  L  T  L  T  R  N  D  K  V  S  K  K  E  H  L  S  T  E  M  G  G  Q  L  H  S  R  G  N  G  N  E  *  R  S  K  I  L  G  *  H  Q  H  P  K  Q  M  M  D  L  S  T  *  H  Y  S  K  H  Q  N  N  A  Y  *  T  Y  L  L  K  T  R  P  T  S  Y  V  I  S  A  I  I  I  K  M  R  G  T  T  A  R  I  L  K  S  P  *  D  L  L  *  E  W  N  R  S  I  S  V  H  P  C  S  E  Y  L  K  H  E  V  A  A  S  E  N  P  *  Y  A  R  T  G  H  *  H  V  C  *  Y  I  P  Q  Y  T  </second_frame>
            <third_frame>   S  H  L  N  T  E  K  R  F  H  S  N  D  K  *  V  T  K  Q  K  V  *  L  *  P  E  T  I  K  C  P  R  K  S  T  F  Q  L  K  W  V  G  S  F  T  H  E  V  M  G  M  N  K  G  Q  K  F  *  D  D  I  N  T  Q  N  R  *  W  T  S  L  L  N  I  I  Q  N  T  K  I  M  H  T  K  P  I  F  S  K  L  G  L  Q  V  M  S  S  Q  Q  *  *  S  R  *  E  E  L  Q  L  E  Y  L  N  L  H  E  T  Y  C  K  N  G  I  E  V  *  A  F  T  R  A  V  S  T  *  S  M  R  W  L  Q  A  K  I  H  D  M  L  E  L  A  I  D  M  F  V  S  T  F  R  N  I  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0323C14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="101999" PGL_stop="101489"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101999" e_stop="101489"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101999" e_stop="101489" e_length="511"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101999" stop="101606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101924" stop="101489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101913" stop="101570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101913" stop="101570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCAATTGATTGAAGAGTTTGCCAAGGAGGAGCAAGGGGAGTATGATAAAGGGGCCGCAGCAGGAGCCTCGAGGTGAGGGCATGGCACAGTGCTTACAAGGTAGGTTAGGGGATATAGGTTTGAGTCAAAAGTGTGTACTATGACGTATTCTTTCTCTCATGAGCTGGGGAACTTAGCCAGAGCAATTTTGGGGTTTGGTCATTACCATTTTATCAGTTTCCTTTACATTCGAGCGAGGATTTAATTGTTGCTTGATGGAGGAGGGGACAGGTTGGTTATAGTATTATTATTGTGACATTGAGATAATGTAGCACTTGATCTGCAACTTAGTGTTGTATATAAATATGATGAAACAAATAAATGTTTCTCAAGGGAAGTGGAATGTTACCTGCCATTCATCCTTTTTTTTTGCACTTATTGAATAGAATAACAGAACTGGACGATTCTGAACCGAGTAGTAGACTCGATTAAGCTATGTAATATCACTTTTTTAGAAGAGTTTGAAGCCTT</gDNA_template>
            <first_frame> V  N  *  L  K  S  L  P  R  R  S  K  G  S  M  I  K  G  P  Q  Q  E  P  R  G  E  G  M  A  Q  C  L  Q  G  R  L  G  D  I  G  L  S  Q  K  C  V  L  *  R  I  L  S  L  M  S  W  G  T  *  P  E  Q  F  W  G  L  V  I  T  I  L  S  V  S  F  T  F  E  R  G  F  N  C  C  L  M  E  E  G  T  G  W  L  *  Y  Y  Y  C  D  I  E  I  M  *  H  L  I  C  N  L  V  L  Y  I  N  M  M  K  Q  I  N  V  S  Q  G  K  W  N  V  T  C  H  S  S  F  F  F  A  L  I  E  *  N  N  R  T  G  R  F  *  T  E  *  *  T  R  L  S  Y  V  I  S  L  F  *  K  S  L  K  P  </first_frame>
            <second_frame>  S  I  D  *  R  V  C  Q  G  G  A  R  G  V  *  *  R  G  R  S  R  S  L  E  V  R  A  W  H  S  A  Y  K  V  G  *  G  I  *  V  *  V  K  S  V  Y  Y  D  V  F  F  L  S  *  A  G  E  L  S  Q  S  N  F  G  V  W  S  L  P  F  Y  Q  F  P  L  H  S  S  E  D  L  I  V  A  *  W  R  R  G  Q  V  G  Y  S  I  I  I  V  T  L  R  *  C  S  T  *  S  A  T  *  C  C  I  *  I  *  *  N  K  *  M  F  L  K  G  S  G  M  L  P  A  I  H  P  F  F  L  H  L  L  N  R  I  T  E  L  D  D  S  E  P  S  S  R  L  D  *  A  M  *  Y  H  F  F  R  R  V  *  S  L </second_frame>
            <third_frame>   Q  L  I  E  E  F  A  K  E  E  Q  G  E  Y  D  K  G  A  A  A  G  A  S  R  *  G  H  G  T  V  L  T  R  *  V  R  G  Y  R  F  E  S  K  V  C  T  M  T  Y  S  F  S  H  E  L  G  N  L  A  R  A  I  L  G  F  G  H  Y  H  F  I  S  F  L  Y  I  R  A  R  I  *  L  L  L  D  G  G  G  D  R  L  V  I  V  L  L  L  *  H  *  D  N  V  A  L  D  L  Q  L  S  V  V  Y  K  Y  D  E  T  N  K  C  F  S  R  E  V  E  C  Y  L  P  F  I  L  F  F  C  T  Y  *  I  E  *  Q  N  W  T  I  L  N  R  V  V  D  S  I  K  L  C  N  I  T  F  L  E  E  F  E  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0323C14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="112912" PGL_stop="112133"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112912" e_stop="112133"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="112912" e_stop="112133" e_length="780"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112912" stop="112411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112823" stop="112133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372058" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTTCAAATCGCTTGGACGTTTTTCTCAATCTGTACTGGATTTGTCTACTTTGAGGAATACAAGGTGTTTGATGCTTTAAGAACAACCATGTTCGTTTTTGGAATGATTTCTGTGTTTATTGGCATTTATTTGCTAGCACCAGAAGATGATGAAGTATTGAAGGATAATTCTTTAGCAGTACTCAAAACTTCGAATTCATCGCAGGATGTTGAGAGATTGTTCATATCATCTGATCAAATTAGGGATATCGAGATCATTTGGACGAGATATGCTGATGAAAACTGCTGATATGATTGGACTATGCGAGCGCCAGGACGTTGGTGTGTGGTGATAAACATGAAAATGGTACAAGCAGTTATCTGTCTCGTCGAAAAATTATATAGTGTATATAAAAGCATTTTTGTGTGTATATACATTGGTAAATTCATTTGGGCAGTGAAGCTTCTATTGTAATTGGCAAAAGTAGCTTGAACTTTTGTTTTTAGGTTGCTAATTAACTCATGAAGTACTGCTACATCTTTGCATTTTTTCAATTTCCTCTAGTAGTAGTGCTTAACAATATTGTTATTTCTTTCTCCTTATATATATGGAAAAAAATATCAAACAGTTCAGTCTTTACTTTCCTGTTTAATATTTGTTATTTGTATTAAAATTCGATAAAATCTGATCAACTATAGTCTAGTTTTAGTTGATAAAGATAAACATTCATATTTGATATCTATTTTATTCGGAATCAAGAGTAAATAAATACTATAAAAAAGGTTTCAAAATTCATACA</gDNA_template>
            <first_frame> C  F  K  S  L  G  R  F  S  Q  S  V  L  D  L  S  T  L  R  N  T  R  C  L  M  L  *  E  Q  P  C  S  F  L  E  *  F  L  C  L  L  A  F  I  C  *  H  Q  K  M  M  K  Y  *  R  I  I  L  *  Q  Y  S  K  L  R  I  H  R  R  M  L  R  D  C  S  Y  H  L  I  K  L  G  I  S  R  S  F  G  R  D  M  L  M  K  T  A  D  M  I  G  L  C  E  R  Q  D  V  G  V  W  *  *  T  *  K  W  Y  K  Q  L  S  V  S  S  K  N  Y  I  V  Y  I  K  A  F  L  C  V  Y  T  L  V  N  S  F  G  Q  *  S  F  Y  C  N  W  Q  K  *  L  E  L  L  F  L  G  C  *  L  T  H  E  V  L  L  H  L  C  I  F  S  I  S  S  S  S  S  A  *  Q  Y  C  Y  F  F  L  L  I  Y  M  E  K  N  I  K  Q  F  S  L  Y  F  P  V  *  Y  L  L  F  V  L  K  F  D  K  I  *  S  T  I  V  *  F  *  L  I  K  I  N  I  H  I  *  Y  L  F  Y  S  E  S  R  V  N  K  Y  Y  K  K  G  F  K  I  H  T </first_frame>
            <second_frame>  V  S  N  R  L  D  V  F  L  N  L  Y  W  I  C  L  L  *  G  I  Q  G  V  *  C  F  K  N  N  H  V  R  F  W  N  D  F  C  V  Y  W  H  L  F  A  S  T  R  R  *  *  S  I  E  G  *  F  F  S  S  T  Q  N  F  E  F  I  A  G  C  *  E  I  V  H  I  I  *  S  N  *  G  Y  R  D  H  L  D  E  I  C  *  *  K  L  L  I  *  L  D  Y  A  S  A  R  T  L  V  C  G  D  K  H  E  N  G  T  S  S  Y  L  S  R  R  K  I  I  *  C  I  *  K  H  F  C  V  Y  I  H  W  *  I  H  L  G  S  E  A  S  I  V  I  G  K  S  S  L  N  F  C  F  *  V  A  N  *  L  M  K  Y  C  Y  I  F  A  F  F  Q  F  P  L  V  V  V  L  N  N  I  V  I  S  F  S  L  Y  I  W  K  K  I  S  N  S  S  V  F  T  F  L  F  N  I  C  Y  L  Y  *  N  S  I  K  S  D  Q  L  *  S  S  F  S  *  *  R  *  T  F  I  F  D  I  Y  F  I  R  N  Q  E  *  I  N  T  I  K  K  V  S  K  F  I   </second_frame>
            <third_frame>   F  Q  I  A  W  T  F  F  S  I  C  T  G  F  V  Y  F  E  E  Y  K  V  F  D  A  L  R  T  T  M  F  V  F  G  M  I  S  V  F  I  G  I  Y  L  L  A  P  E  D  D  E  V  L  K  D  N  S  L  A  V  L  K  T  S  N  S  S  Q  D  V  E  R  L  F  I  S  S  D  Q  I  R  D  I  E  I  I  W  T  R  Y  A  D  E  N  C  *  Y  D  W  T  M  R  A  P  G  R  W  C  V  V  I  N  M  K  M  V  Q  A  V  I  C  L  V  E  K  L  Y  S  V  Y  K  S  I  F  V  C  I  Y  I  G  K  F  I  W  A  V  K  L  L  L  *  L  A  K  V  A  *  T  F  V  F  R  L  L  I  N  S  *  S  T  A  T  S  L  H  F  F  N  F  L  *  *  *  C  L  T  I  L  L  F  L  S  P  Y  I  Y  G  K  K  Y  Q  T  V  Q  S  L  L  S  C  L  I  F  V  I  C  I  K  I  R  *  N  L  I  N  Y  S  L  V  L  V  D  K  D  K  H  S  Y  L  I  S  I  L  F  G  I  K  S  K  *  I  L  *  K  R  F  Q  N  S  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112910" stop="112623"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQIAWTFFSICTGFVYFEEYKVFDALRTTMFVFGMISVFIGIYLLAPEDDEVLKDNSLAVLKTSNSSQDVERLFISSDQIRDIEIIWTRYADENC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="+" PGL_start="112308" PGL_stop="112862"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112308" e_stop="112862"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="112308" e_stop="112862" e_length="555"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112308" stop="112862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112308" stop="112861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112308" stop="112856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112308" stop="112856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112308" stop="112855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112309" stop="112856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112309" stop="112856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372274" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGATATTTTTTTCCATATATATAAGGAGAAAGAAATAACAATATTGTTAAGCACTACTACTAGAGGAAATTGAAAAAATGCAAAGATGTAGCAGTACTTCATGAGTTAATTAGCAACCTAAAAACAAAAGTTCAAGCTACTTTTGCCAATTACAATAGAAGCTTCACTGCCCAAATGAATTTACCAATGTATATACACACAAAAATGCTTTTATATACACTATATAATTTTTCGACGAGACAGATAACTGCTTGTACCATTTTCATGTTTATCACCACACACCAACGTCCTGGCGCTCGCATAGTCCAATCATATCAGCAGTTTTCATCAGCATATCTCGTCCAAATGATCTCGATATCCCTAATTTGATCAGATGATATGAACAATCTCTCAACATCCTGCGATGAATTCGAAGTTTTGAGTACTGCTAAAGAATTATCCTTCAATACTTCATCATCTTCTGGTGCTAGCAAATAAATGCCAATAAACACAGAAATCATTCCAAAAACGAACATGGTTGTTCTTAAAGCATCAAACACCTTGTATTCCTCAAA</gDNA_template>
            <first_frame> L  I  F  F  S  I  Y  I  R  R  K  K  *  Q  Y  C  *  A  L  L  L  E  E  I  E  K  M  Q  R  C  S  S  T  S  *  V  N  *  Q  P  K  N  K  S  S  S  Y  F  C  Q  L  Q  *  K  L  H  C  P  N  E  F  T  N  V  Y  T  H  K  N  A  F  I  Y  T  I  *  F  F  D  E  T  D  N  C  L  Y  H  F  H  V  Y  H  H  T  P  T  S  W  R  S  H  S  P  I  I  S  A  V  F  I  S  I  S  R  P  N  D  L  D  I  P  N  L  I  R  *  Y  E  Q  S  L  N  I  L  R  *  I  R  S  F  E  Y  C  *  R  I  I  L  Q  Y  F  I  I  F  W  C  *  Q  I  N  A  N  K  H  R  N  H  S  K  N  E  H  G  C  S  *  S  I  K  H  L  V  F  L  K </first_frame>
            <second_frame>  *  Y  F  F  P  Y  I  *  G  E  R  N  N  N  I  V  K  H  Y  Y  *  R  K  L  K  K  C  K  D  V  A  V  L  H  E  L  I  S  N  L  K  T  K  V  Q  A  T  F  A  N  Y  N  R  S  F  T  A  Q  M  N  L  P  M  Y  I  H  T  K  M  L  L  Y  T  L  Y  N  F  S  T  R  Q  I  T  A  C  T  I  F  M  F  I  T  T  H  Q  R  P  G  A  R  I  V  Q  S  Y  Q  Q  F  S  S  A  Y  L  V  Q  M  I  S  I  S  L  I  *  S  D  D  M  N  N  L  S  T  S  C  D  E  F  E  V  L  S  T  A  K  E  L  S  F  N  T  S  S  S  S  G  A  S  K  *  M  P  I  N  T  E  I  I  P  K  T  N  M  V  V  L  K  A  S  N  T  L  Y  S  S   </second_frame>
            <third_frame>   D  I  F  F  H  I  Y  K  E  K  E  I  T  I  L  L  S  T  T  T  R  G  N  *  K  N  A  K  M  *  Q  Y  F  M  S  *  L  A  T  *  K  Q  K  F  K  L  L  L  P  I  T  I  E  A  S  L  P  K  *  I  Y  Q  C  I  Y  T  Q  K  C  F  Y  I  H  Y  I  I  F  R  R  D  R  *  L  L  V  P  F  S  C  L  S  P  H  T  N  V  L  A  L  A  *  S  N  H  I  S  S  F  H  Q  H  I  S  S  K  *  S  R  Y  P  *  F  D  Q  M  I  *  T  I  S  Q  H  P  A  M  N  S  K  F  *  V  L  L  K  N  Y  P  S  I  L  H  H  L  L  V  L  A  N  K  C  Q  *  T  Q  K  S  F  Q  K  R  T  W  L  F  L  K  H  Q  T  P  C  I  P  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112372" stop="112677"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKLKKCKDVAVLHELISNLKTKVQATFANYNRSFTAQMNLPMYIHTKMLLYTLYNFSTRQITACTIFMFITTHQRPGARIVQSYQQFSSAYLVQMISISLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="27" PGL_strand="-" PGL_start="113901" PGL_stop="113256"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113901" e_stop="113256"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="113901" e_stop="113256" e_length="646"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113901" stop="113256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113901" stop="113539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283232" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAATCTGCAGTCCGAAGAAATATCATAAATAGTGTTTTAAACAACGTGAAACTATCTTATTCACAGAGAATTCGATTGAATCAAGTTTATCGTAATATTATATTGGGCGATCTGAGTCTTCTAGCATAGTGGCAACAGATGTTGGCTCAAAAATTGTTTTAGGTCACAGGTTTTGTATTTTTTTTTTTGAAAAAAATTTCCTTGTTAAAATTTCTGAATCCGCGAGTGCGTCCATGGGGGATTGGGTGATTGGAGCGTTGATCAATTTGTTAGGAAGCATTTTCATCAACTTCGGAACAAATCTACTTAAATTAGCTCATGATGAGAGAAATTTAAGGGCTAGGATGAAGCCCATTATATACTTCCAAGCATGGAGAATTGGTATTCTCTTCTTCACAATAGGAAATTGTCTCAATTTCATTTCATTTGGTTATGCTGCTCAATCACTTCTAGCAGCTTTGGGATCTATTCAGTTCATTTCAAACATCGGATTCGCGTACTTGGTGTTGAACAAAACAGTGAAAATCAAATTACTGTTAGCCACTGCTTTTGTTGTTGCTGGAAACATTTTCCTTGTAGCTTTTGGTAATCATCAGTCCCCTGTTTACACAACAGAGCAATTGGGTGAAAATTACACAAACATT</gDNA_template>
            <first_frame> L  N  L  Q  S  E  E  I  S  *  I  V  F  *  T  T  *  N  Y  L  I  H  R  E  F  D  *  I  K  F  I  V  I  L  Y  W  A  I  *  V  F  *  H  S  G  N  R  C  W  L  K  N  C  F  R  S  Q  V  L  Y  F  F  F  *  K  K  F  P  C  *  N  F  *  I  R  E  C  V  H  G  G  L  G  D  W  S  V  D  Q  F  V  R  K  H  F  H  Q  L  R  N  K  S  T  *  I  S  S  *  *  E  K  F  K  G  *  D  E  A  H  Y  I  L  P  S  M  E  N  W  Y  S  L  L  H  N  R  K  L  S  Q  F  H  F  I  W  L  C  C  S  I  T  S  S  S  F  G  I  Y  S  V  H  F  K  H  R  I  R  V  L  G  V  E  Q  N  S  E  N  Q  I  T  V  S  H  C  F  C  C  C  W  K  H  F  P  C  S  F  W  *  S  S  V  P  C  L  H  N  R  A  I  G  *  K  L  H  K  H  </first_frame>
            <second_frame>  *  I  C  S  P  K  K  Y  H  K  *  C  F  K  Q  R  E  T  I  L  F  T  E  N  S  I  E  S  S  L  S  *  Y  Y  I  G  R  S  E  S  S  S  I  V  A  T  D  V  G  S  K  I  V  L  G  H  R  F  C  I  F  F  F  E  K  N  F  L  V  K  I  S  E  S  A  S  A  S  M  G  D  W  V  I  G  A  L  I  N  L  L  G  S  I  F  I  N  F  G  T  N  L  L  K  L  A  H  D  E  R  N  L  R  A  R  M  K  P  I  I  Y  F  Q  A  W  R  I  G  I  L  F  F  T  I  G  N  C  L  N  F  I  S  F  G  Y  A  A  Q  S  L  L  A  A  L  G  S  I  Q  F  I  S  N  I  G  F  A  Y  L  V  L  N  K  T  V  K  I  K  L  L  L  A  T  A  F  V  V  A  G  N  I  F  L  V  A  F  G  N  H  Q  S  P  V  Y  T  T  E  Q  L  G  E  N  Y  T  N  I </second_frame>
            <third_frame>   K  S  A  V  R  R  N  I  I  N  S  V  L  N  N  V  K  L  S  Y  S  Q  R  I  R  L  N  Q  V  Y  R  N  I  I  L  G  D  L  S  L  L  A  *  W  Q  Q  M  L  A  Q  K  L  F  *  V  T  G  F  V  F  F  F  L  K  K  I  S  L  L  K  F  L  N  P  R  V  R  P  W  G  I  G  *  L  E  R  *  S  I  C  *  E  A  F  S  S  T  S  E  Q  I  Y  L  N  *  L  M  M  R  E  I  *  G  L  G  *  S  P  L  Y  T  S  K  H  G  E  L  V  F  S  S  S  Q  *  E  I  V  S  I  S  F  H  L  V  M  L  L  N  H  F  *  Q  L  W  D  L  F  S  S  F  Q  T  S  D  S  R  T  W  C  *  T  K  Q  *  K  S  N  Y  C  *  P  L  L  L  L  L  L  E  T  F  S  L  *  L  L  V  I  I  S  P  L  F  T  Q  Q  S  N  W  V  K  I  T  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113804" stop="113256"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYIGRSESSSIVATDVGSKIVLGHRFCIFFFEKNFLVKISESASASMGDWVIGALINLLGSIFINFGTNLLKLAHDERNLRARMKPIIYFQAWRIGILFFTIGNCLNFISFGYAAQSLLAALGSIQFISNIGFAYLVLNKTVKIKLLLATAFVVAGNIFLVAFGNHQSPVYTTEQLGENYTNI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="28" PGL_strand="+" PGL_start="118554" PGL_stop="118983"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118554" e_stop="118983"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="118554" e_stop="118983" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118554" stop="118983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335580" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="28" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGCTTGAGACTTGAGTCTTGAGATATCTTGAGAAGAGTTATTTGTTGGTGGCGAAAAACAAGAACAAAAAGGGAGGGAGATATGAAGTTAATAGTAGAAGTAATAGATGCTTATGATCTTATGCCAAAAGATGGTGAAGGATCAGTAAGTGCATTTGTAGAAGTTGATTTTGAAAACCAACTTAGCAAAACTAGAACTGTCCCAAAAAATCTCAACCCCACTTGGAACCATAAACTCATTTTCCATCTTGACGATATAAAGAATCATCGATACAAATACATTGATGTTTCTGTGTATCATGAGAGAAGGCCTATTCCAGGGAGAAACTTTCTTGGAAGGGTGAGAATTCCTTGCTCAAATATAGTCAAGAAAGGGGAAGAAGTTTATCAAAGATTCCAACTTGAAAAGAAATGGTTTTCCTCATTTGTT</gDNA_template>
            <first_frame> L  L  E  T  *  V  L  R  Y  L  E  K  S  Y  L  L  V  A  K  N  K  N  K  K  G  G  R  Y  E  V  N  S  R  S  N  R  C  L  *  S  Y  A  K  R  W  *  R  I  S  K  C  I  C  R  S  *  F  *  K  P  T  *  Q  N  *  N  C  P  K  K  S  Q  P  H  L  E  P  *  T  H  F  P  S  *  R  Y  K  E  S  S  I  Q  I  H  *  C  F  C  V  S  *  E  K  A  Y  S  R  E  K  L  S  W  K  G  E  N  S  L  L  K  Y  S  Q  E  R  G  R  S  L  S  K  I  P  T  *  K  E  M  V  F  L  I  C  </first_frame>
            <second_frame>  C  L  R  L  E  S  *  D  I  L  R  R  V  I  C  W  W  R  K  T  R  T  K  R  E  G  D  M  K  L  I  V  E  V  I  D  A  Y  D  L  M  P  K  D  G  E  G  S  V  S  A  F  V  E  V  D  F  E  N  Q  L  S  K  T  R  T  V  P  K  N  L  N  P  T  W  N  H  K  L  I  F  H  L  D  D  I  K  N  H  R  Y  K  Y  I  D  V  S  V  Y  H  E  R  R  P  I  P  G  R  N  F  L  G  R  V  R  I  P  C  S  N  I  V  K  K  G  E  E  V  Y  Q  R  F  Q  L  E  K  K  W  F  S  S  F  V </second_frame>
            <third_frame>   A  *  D  L  S  L  E  I  S  *  E  E  L  F  V  G  G  E  K  Q  E  Q  K  G  R  E  I  *  S  *  *  *  K  *  *  M  L  M  I  L  C  Q  K  M  V  K  D  Q  *  V  H  L  *  K  L  I  L  K  T  N  L  A  K  L  E  L  S  Q  K  I  S  T  P  L  G  T  I  N  S  F  S  I  L  T  I  *  R  I  I  D  T  N  T  L  M  F  L  C  I  M  R  E  G  L  F  Q  G  E  T  F  L  E  G  *  E  F  L  A  Q  I  *  S  R  K  G  K  K  F  I  K  D  S  N  L  K  R  N  G  F  P  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="+"/>
                <serials PGL_serial="28" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118576" stop="118983"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DILRRVICWWRKTRTKREGDMKLIVEVIDAYDLMPKDGEGSVSAFVEVDFENQLSKTRTVPKNLNPTWNHKLIFHLDDIKNHRYKYIDVSVYHERRPIPGRNFLGRVRIPCSNIVKKGEEVYQRFQLEKKWFSSFV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="29" PGL_strand="+" PGL_start="122190" PGL_stop="122681"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122190" e_stop="122681"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="122190" e_stop="122681" e_length="492"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122190" stop="122681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428699" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="29" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACCATATATCCCCACAATGTACAAAAAGCTATAACAAATAAAGTATAAAACACTGTTTATATTTTAGTCTACACTTCACAGGGCCATCATCGCAAGGGAAAGTGCTGCTGCACCTCTTGAGCCAGACAGCAAACCTGTACAACGCGGGTTTCTTACTGATGAGACAACTCTATATTTTGATCCCTCCTGCATTATGAGATGAAAAGCAGCAGGTCTTGTTTGCAGCACACTCTCTTTCTCAGTAGCCCACTAGGAAACTGGCCTTCAAATTATAAAACCAAATCACTGTTGCCAGAATCCAGTTATCTGATGCTGCAAACACCTTTTTGGACATGTTGCACATTGAGAAACTACAGGTACAGATGAAATGGTAATCAAGCTCCCAGCTTGCATCTAGACATTAGAATATTCCAACCGCCAGAAATGTGTATCAAGCTCCAGCCTCATTACTTAGTTTGAGGGTCATCTTGATGTTCATGGCTGCCAGTTC</gDNA_template>
            <first_frame> I  P  Y  I  P  T  M  Y  K  K  L  *  Q  I  K  Y  K  T  L  F  I  F  *  S  T  L  H  R  A  I  I  A  R  E  S  A  A  A  P  L  E  P  D  S  K  P  V  Q  R  G  F  L  T  D  E  T  T  L  Y  F  D  P  S  C  I  M  R  *  K  A  A  G  L  V  C  S  T  L  S  F  S  V  A  H  *  E  T  G  L  Q  I  I  K  P  N  H  C  C  Q  N  P  V  I  *  C  C  K  H  L  F  G  H  V  A  H  *  E  T  T  G  T  D  E  M  V  I  K  L  P  A  C  I  *  T  L  E  Y  S  N  R  Q  K  C  V  S  S  S  S  L  I  T  *  F  E  G  H  L  D  V  H  G  C  Q  F </first_frame>
            <second_frame>  Y  H  I  S  P  Q  C  T  K  S  Y  N  K  *  S  I  K  H  C  L  Y  F  S  L  H  F  T  G  P  S  S  Q  G  K  V  L  L  H  L  L  S  Q  T  A  N  L  Y  N  A  G  F  L  L  M  R  Q  L  Y  I  L  I  P  P  A  L  *  D  E  K  Q  Q  V  L  F  A  A  H  S  L  S  Q  *  P  T  R  K  L  A  F  K  L  *  N  Q  I  T  V  A  R  I  Q  L  S  D  A  A  N  T  F  L  D  M  L  H  I  E  K  L  Q  V  Q  M  K  W  *  S  S  S  Q  L  A  S  R  H  *  N  I  P  T  A  R  N  V  Y  Q  A  P  A  S  L  L  S  L  R  V  I  L  M  F  M  A  A  S   </second_frame>
            <third_frame>   T  I  Y  P  H  N  V  Q  K  A  I  T  N  K  V  *  N  T  V  Y  I  L  V  Y  T  S  Q  G  H  H  R  K  G  K  C  C  C  T  S  *  A  R  Q  Q  T  C  T  T  R  V  S  Y  *  *  D  N  S  I  F  *  S  L  L  H  Y  E  M  K  S  S  R  S  C  L  Q  H  T  L  F  L  S  S  P  L  G  N  W  P  S  N  Y  K  T  K  S  L  L  P  E  S  S  Y  L  M  L  Q  T  P  F  W  T  C  C  T  L  R  N  Y  R  Y  R  *  N  G  N  Q  A  P  S  L  H  L  D  I  R  I  F  Q  P  P  E  M  C  I  K  L  Q  P  H  Y  L  V  *  G  S  S  *  C  S  W  L  P  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0323C14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="30" PGL_strand="-" PGL_start="136499" PGL_stop="122410"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="136499" e_stop="136432"/>
            <exon e_start="136352" e_stop="136307"/>
            <exon e_start="134673" e_stop="134493"/>
            <exon e_start="134408" e_stop="134356"/>
            <exon e_start="134246" e_stop="134173"/>
            <exon e_start="134065" e_stop="133948"/>
            <exon e_start="131212" e_stop="131125"/>
            <exon e_start="130441" e_stop="130326"/>
            <exon e_start="128482" e_stop="128355"/>
            <exon e_start="128261" e_stop="128182"/>
            <exon e_start="127542" e_stop="127442"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.605" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.810" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.889" e_score="1.000"/>
          <exon-intron don_prob="0.858" acc_prob="0.808" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.920" e_score="0.991"/>
          <exon-intron don_prob="0.935" acc_prob="0.823" e_score="0.989"/>
          <exon-intron don_prob="0.992" acc_prob="0.747" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="136499" e_stop="136432" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.605" acc_prob="0.997">
            <gDNA_intron_boundary i_start="136431" i_stop="136353" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="136352" e_stop="136307" e_length="46"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.975">
            <gDNA_intron_boundary i_start="136306" i_stop="134674" i_length="1633"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="134673" e_stop="134493" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.978">
            <gDNA_intron_boundary i_start="134492" i_stop="134409" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="134408" e_stop="134356" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.810" acc_prob="0.998">
            <gDNA_intron_boundary i_start="134355" i_stop="134247" i_length="109"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="134246" e_stop="134173" e_length="74"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.889">
            <gDNA_intron_boundary i_start="134172" i_stop="134066" i_length="107"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="134065" e_stop="133948" e_length="118"/>
          </exon>
          <intron i_serial="6" don_prob="0.858" acc_prob="0.808">
            <gDNA_intron_boundary i_start="133947" i_stop="131213" i_length="2735"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="131212" e_stop="131125" e_length="88"/>
          </exon>
          <intron i_serial="7" don_prob="0.970" acc_prob="0.997">
            <gDNA_intron_boundary i_start="131124" i_stop="130442" i_length="683"/>
          </intron>
          <exon e_serial="8" e_score="0.991">
            <gDNA_exon_boundary e_start="130441" e_stop="130326" e_length="116"/>
          </exon>
          <intron i_serial="8" don_prob="0.982" acc_prob="0.920">
            <gDNA_intron_boundary i_start="130325" i_stop="128483" i_length="1843"/>
          </intron>
          <exon e_serial="9" e_score="0.989">
            <gDNA_exon_boundary e_start="128482" e_stop="128355" e_length="128"/>
          </exon>
          <intron i_serial="9" don_prob="0.935" acc_prob="0.823">
            <gDNA_intron_boundary i_start="128354" i_stop="128262" i_length="93"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="128261" e_stop="128182" e_length="80"/>
          </exon>
          <intron i_serial="10" don_prob="0.992" acc_prob="0.747">
            <gDNA_intron_boundary i_start="128181" i_stop="127543" i_length="639"/>
          </intron>
          <exon e_serial="11" e_score="0.990">
            <gDNA_exon_boundary e_start="127542" e_stop="127442" e_length="101"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136499" stop="136432"/>
              <exon start="136352" stop="136307"/>
              <exon start="134673" stop="134493"/>
              <exon start="134408" stop="134356"/>
              <exon start="134246" stop="134173"/>
              <exon start="134065" stop="133948"/>
              <exon start="131212" stop="131125"/>
              <exon start="130441" stop="130387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134567" stop="134493"/>
              <exon start="134408" stop="134356"/>
              <exon start="134246" stop="134173"/>
              <exon start="134065" stop="133948"/>
              <exon start="131212" stop="131125"/>
              <exon start="130441" stop="130326"/>
              <exon start="128482" stop="128392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134567" stop="134493"/>
              <exon start="134408" stop="134356"/>
              <exon start="134246" stop="134173"/>
              <exon start="134065" stop="133948"/>
              <exon start="131212" stop="131125"/>
              <exon start="130441" stop="130326"/>
              <exon start="128482" stop="128455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128413" stop="128355"/>
              <exon start="128261" stop="128182"/>
              <exon start="127542" stop="127442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470036" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="30" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGATCAATCTGCAGTCTCACTTAAATTGTATTATCTAAACAATGGAAGTGCAAGACTTGGATTCTG : GATACAAGGAAGGGAATACTTGCTTCCTGTTGGTATCATCTTAAAG : GCCCTTGTTGACACCACTGATCACGAGATATACGTCAATTTAACATGTTGCTACAATGAGGAATGTGACCGTGTAAAGGGATCTGTCGGCACCCAGCTTGTTGGTGAAAGAGCAAAAATTATCCTGGATGAAGTTCAGGCCCTATCTCTTTTTACCCGAGCACAGTGCCTGCGACATATTG : GGGAGCATTTCCAACCTGTTGTGATCGGAATGCAAAATGATAGTTACAAAACT : GTTGCTGATGCTGTGCTTAGAGACTACATATTTGTCCATCTGGATAACAATCATGATAAATTTAATCTACTTAT : CTTTATGTTGCAGAAGCTTTTCTCTCTGATAGATCAGACATCTGTCCTAGACAATCCAGACTCTCTGCAAAATCAAGAAGTTTTGCTGCCGGGTCACTTAATTACCATATATCTGAAG : GAAAAGCTACAAGATTGGCTACTTAAATTACAACGGTCACTTCAAGAAGAAACTGATGGTGAAAAAAAGAAGTTTGAGCTAAGTAGCT : TGACAGACGTCAAGAAGGCTATTGAAAAAAATGCTCCCAAACAGATTGGCTTGACTATTGAGAGCATGTTGAAGACTGGGAGATTGGCTACACAATCAGGTCTTGATTTGCAGCAG : AGAGCTGGAATGACTGTCCAGGCAGAAAAGTTAAATTTCCTCCGTTTTCTTTCACATTTTCGAGCGGTTCATCGAGGTGCCTCATTTGCTGGTCTTCGTACTACAAGTGTGCGGAAGTTGTTACCTGA : ATCTTGGGGTTTCCTTTGTCCTGTTCACACACCTGATGGGGAGCCATGTGGGTTGCTTAATCATATGACTGCATCTTGCC : GCATAACCTCATACTATGATTCAAAGGGCAATGTTAAAGACTTCTTCAAAATGCGGATGTCCATATTGAATGTGCTGATTGCAATTGGAATGACACCATCA</gDNA_template>
            <first_frame> E  D  Q  S  A  V  S  L  K  L  Y  Y  L  N  N  G  S  A  R  L  G  F  W :   I  Q  G  R  E  Y  L  L  P  V  G  I  I  L  K  :  A  L  V  D  T  T  D  H  E  I  Y  V  N  L  T  C  C  Y  N  E  E  C  D  R  V  K  G  S  V  G  T  Q  L  V  G  E  R  A  K  I  I  L  D  E  V  Q  A  L  S  L  F  T  R  A  Q  C  L  R  H  I   : G  E  H  F  Q  P  V  V  I  G  M  Q  N  D  S  Y  K  T  :  V  A  D  A  V  L  R  D  Y  I  F  V  H  L  D  N  N  H  D  K  F  N  L  L  I :   F  M  L  Q  K  L  F  S  L  I  D  Q  T  S  V  L  D  N  P  D  S  L  Q  N  Q  E  V  L  L  P  G  H  L  I  T  I  Y  L  K  :  E  K  L  Q  D  W  L  L  K  L  Q  R  S  L  Q  E  E  T  D  G  E  K  K  K  F  E  L  S  S   : L  T  D  V  K  K  A  I  E  K  N  A  P  K  Q  I  G  L  T  I  E  S  M  L  K  T  G  R  L  A  T  Q  S  G  L  D  L  Q  Q  :  R  A  G  M  T  V  Q  A  E  K  L  N  F  L  R  F  L  S  H  F  R  A  V  H  R  G  A  S  F  A  G  L  R  T  T  S  V  R  K  L  L  P  E :   S  W  G  F  L  C  P  V  H  T  P  D  G  E  P  C  G  L  L  N  H  M  T  A  S  C   : R  I  T  S  Y  Y  D  S  K  G  N  V  K  D  F  F  K  M  R  M  S  I  L  N  V  L  I  A  I  G  M  T  P  S </first_frame>
            <second_frame>  K  I  N  L  Q  S  H  L  N  C  I  I  *  T  M  E  V  Q  D  L  D  S   : G  Y  K  E  G  N  T  C  F  L  L  V  S  S  *  R :   P  L  L  T  P  L  I  T  R  Y  T  S  I  *  H  V  A  T  M  R  N  V  T  V  *  R  D  L  S  A  P  S  L  L  V  K  E  Q  K  L  S  W  M  K  F  R  P  Y  L  F  L  P  E  H  S  A  C  D  I  L  :  G  S  I  S  N  L  L  *  S  E  C  K  M  I  V  T  K  L :   L  L  M  L  C  L  E  T  T  Y  L  S  I  W  I  T  I  M  I  N  L  I  Y  L   : S  L  C  C  R  S  F  S  L  *  *  I  R  H  L  S  *  T  I  Q  T  L  C  K  I  K  K  F  C  C  R  V  T  *  L  P  Y  I  *  R :   K  S  Y  K  I  G  Y  L  N  Y  N  G  H  F  K  K  K  L  M  V  K  K  R  S  L  S  *  V  A  :  *  Q  T  S  R  R  L  L  K  K  M  L  P  N  R  L  A  *  L  L  R  A  C  *  R  L  G  D  W  L  H  N  Q  V  L  I  C  S  R :   E  L  E  *  L  S  R  Q  K  S  *  I  S  S  V  F  F  H  I  F  E  R  F  I  E  V  P  H  L  L  V  F  V  L  Q  V  C  G  S  C  Y  L   : N  L  G  V  S  F  V  L  F  T  H  L  M  G  S  H  V  G  C  L  I  I  *  L  H  L  A  :  A  *  P  H  T  M  I  Q  R  A  M  L  K  T  S  S  K  C  G  C  P  Y  *  M  C  *  L  Q  L  E  *  H  H   </second_frame>
            <third_frame>   R  S  I  C  S  L  T  *  I  V  L  S  K  Q  W  K  C  K  T  W  I  L  :  D  T  R  K  G  I  L  A  S  C  W  Y  H  L  K   : G  P  C  *  H  H  *  S  R  D  I  R  Q  F  N  M  L  L  Q  *  G  M  *  P  C  K  G  I  C  R  H  P  A  C  W  *  K  S  K  N  Y  P  G  *  S  S  G  P  I  S  F  Y  P  S  T  V  P  A  T  Y  W :   G  A  F  P  T  C  C  D  R  N  A  K  *  *  L  Q  N   : C  C  *  C  C  A  *  R  L  H  I  C  P  S  G  *  Q  S  *  *  I  *  S  T  Y  :  L  Y  V  A  E  A  F  L  S  D  R  S  D  I  C  P  R  Q  S  R  L  S  A  K  S  R  S  F  A  A  G  S  L  N  Y  H  I  S  E   : G  K  A  T  R  L  A  T  *  I  T  T  V  T  S  R  R  N  *  W  *  K  K  E  V  *  A  K  *  L :   D  R  R  Q  E  G  Y  *  K  K  C  S  Q  T  D  W  L  D  Y  *  E  H  V  E  D  W  E  I  G  Y  T  I  R  S  *  F  A  A   : E  S  W  N  D  C  P  G  R  K  V  K  F  P  P  F  S  F  T  F  S  S  G  S  S  R  C  L  I  C  W  S  S  Y  Y  K  C  A  E  V  V  T  *  :  I  L  G  F  P  L  S  C  S  H  T  *  W  G  A  M  W  V  A  *  S  Y  D  C  I  L  P :   H  N  L  I  L  *  F  K  G  Q  C  *  R  L  L  Q  N  A  D  V  H  I  E  C  A  D  C  N  W  N  D  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="30" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136499" stop="136432"/>
                    <exon start="136352" stop="136307"/>
                    <exon start="134673" stop="134493"/>
                    <exon start="134408" stop="134356"/>
                    <exon start="134246" stop="134173"/>
                    <exon start="134065" stop="133948"/>
                    <exon start="131212" stop="131125"/>
                    <exon start="130441" stop="130326"/>
                    <exon start="128482" stop="128355"/>
                    <exon start="128261" stop="128182"/>
                    <exon start="127542" stop="127442"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EDQSAVSLKLYYLNNGSARLGFWIQGREYLLPVGIILKALVDTTDHEIYVNLTCCYNEECDRVKGSVGTQLVGERAKIILDEVQALSLFTRAQCLRHIGEHFQPVVIGMQNDSYKTVADAVLRDYIFVHLDNNHDKFNLLIFMLQKLFSLIDQTSVLDNPDSLQNQEVLLPGHLITIYLKEKLQDWLLKLQRSLQEETDGEKKKFELSSLTDVKKAIEKNAPKQIGLTIESMLKTGRLATQSGLDLQQRAGMTVQAEKLNFLRFLSHFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTASCRITSYYDSKGNVKDFFKMRMSILNVLIAIGMTPS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="127118" e_stop="127062"/>
            <exon e_start="126925" e_stop="126761"/>
            <exon e_start="126665" e_stop="126591"/>
            <exon e_start="125828" e_stop="125725"/>
            <exon e_start="125650" e_stop="125575"/>
            <exon e_start="125107" e_stop="124979"/>
            <exon e_start="124903" e_stop="124763"/>
            <exon e_start="124218" e_stop="124006"/>
            <exon e_start="123770" e_stop="123528"/>
            <exon e_start="123035" e_stop="122410"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.930"/>
          <exon-intron don_prob="0.877" acc_prob="0.878" e_score="0.994"/>
          <exon-intron don_prob="0.962" acc_prob="0.889" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.999" e_score="0.990"/>
          <exon-intron don_prob="0.902" acc_prob="0.994" e_score="0.987"/>
          <exon-intron don_prob="0.998" acc_prob="0.914" e_score="0.992"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.922"/>
          <exon-intron don_prob="0.999" acc_prob="0.973" e_score="0.986"/>
          <exon-intron don_prob="0.983" acc_prob="0.909" e_score="0.988"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="127118" e_stop="127062" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="127061" i_stop="126926" i_length="136"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="126925" e_stop="126761" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.877" acc_prob="0.878">
            <gDNA_intron_boundary i_start="126760" i_stop="126666" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="126665" e_stop="126591" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.889">
            <gDNA_intron_boundary i_start="126590" i_stop="125829" i_length="762"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="125828" e_stop="125725" e_length="104"/>
          </exon>
          <intron i_serial="4" don_prob="0.949" acc_prob="0.999">
            <gDNA_intron_boundary i_start="125724" i_stop="125651" i_length="74"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="125650" e_stop="125575" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="0.902" acc_prob="0.994">
            <gDNA_intron_boundary i_start="125574" i_stop="125108" i_length="467"/>
          </intron>
          <exon e_serial="6" e_score="0.992">
            <gDNA_exon_boundary e_start="125107" e_stop="124979" e_length="129"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.914">
            <gDNA_intron_boundary i_start="124978" i_stop="124904" i_length="75"/>
          </intron>
          <exon e_serial="7" e_score="0.922">
            <gDNA_exon_boundary e_start="124903" e_stop="124763" e_length="141"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="124762" i_stop="124219" i_length="544"/>
          </intron>
          <exon e_serial="8" e_score="0.986">
            <gDNA_exon_boundary e_start="124218" e_stop="124006" e_length="213"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.973">
            <gDNA_intron_boundary i_start="124005" i_stop="123771" i_length="235"/>
          </intron>
          <exon e_serial="9" e_score="0.988">
            <gDNA_exon_boundary e_start="123770" e_stop="123528" e_length="243"/>
          </exon>
          <intron i_serial="9" don_prob="0.983" acc_prob="0.909">
            <gDNA_intron_boundary i_start="123527" i_stop="123036" i_length="492"/>
          </intron>
          <exon e_serial="10" e_score="0.990">
            <gDNA_exon_boundary e_start="123035" e_stop="122410" e_length="626"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127118" stop="127062"/>
              <exon start="126925" stop="126761"/>
              <exon start="126665" stop="126591"/>
              <exon start="125828" stop="125725"/>
              <exon start="125650" stop="125575"/>
              <exon start="125107" stop="124979"/>
              <exon start="124903" stop="124763"/>
              <exon start="124218" stop="124172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124856" stop="124763"/>
              <exon start="124218" stop="124006"/>
              <exon start="123770" stop="123528"/>
              <exon start="123035" stop="122973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123604" stop="123528"/>
              <exon start="123035" stop="122410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122853" stop="122503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602499" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="30" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTCTGCGCCTGCTGAAGAGGGCAATGATCTTGAACTCATTGGACCCTTTGAACAG : GTGTATATGGAGATAAGCTGCCCGGATGGTGGAGATGGAGGAAGGAAAACCTTATTCCCTGCCACACATCGAGAAATTCATCCAACTAATATTTTGAGTGTTGTTGGCAATCTTACACCTTGGTCTGATCATAATCAGAGTCCACGTAATATGTATCAATGTCAG : ATGGGTAAACAAACAATGGGTTTCTCCTCACAAGCATTAAATTGTCGTGCTGATCAAAAGTTATATCACCTTCAG : ACTCCTCAAACCCCAATTGTACGCACAAAAGCTTATGAGAAGTATTGTGTTGATGACTATCCATTAGGAACAAATGCAATTGTGGCAGTTTTGGCTTATTCAGG : ATATGACATGGAAGACGCTATGGTCTTAAATAAATCATCTGTAGATCGTGGTATGTGTCATGGGCATATATACCAG : ACAGAAACCATTGACTTGACTGAGCAAAGCGCCAAATCTGATCGTGCTCAGAGATTGTTTAGAAGAAGCAATTTGGATAAGTCGTCTCATCAGCTGATTGATTCTGATGGTCTTCCATACGTGGGACAG : AGGATTAATCCAAATGAGCCATATTGTAGTATTTACAATGAAATAACCAGTCAGACAACTTGTATGAAGTTGAAGGGTTCGGAGCCTGTTGTTGTTGATTATGTTGCTGTCGATGTGAAAAATAAAGCACATCTGCAGAAG : GCGAATATACGTTTTAGGCGCTCCAGGAATCCTGTAATTGGTGATAAATTTAGCAGCCGACATGGGCAAAAGGGTGTTTGCTCTCAATTATGGCCTGATGTTGATATGCCCTTCTCAGCAGTTACAGGCATGAGGCCAGATCTTATTATTAATCCTCATGCTTTCCCTTCAAGGATGACAATTGCTATGCTGTTGGAGTCGATTGCTGCTAAG : GGGGGTGCTTTACATGGGAAGTTTGTTGATGCAACGCCGTTCTCTAACACAATGAAGGAATCAGAATCGGAATCCAGTTCACTTGTGGATGACCTTGGTTCCATGTTAGCGGTTTGTGGCTTCAATCACCATGGTACGGAAGTACTATATAGTGGAGTATATGGGACAGAACTGACTTGTCGAATATTTATTGGACCTGTTTATTATCAGCGTCTGCGACACATGGTTTCTGATAAATTTCAG : GTCCGTTCTACTGGACAGGTAGACCATATCACTCGGCAGCCTATCAAGGGGAGAAAGCGTGGTGGAGGTGTCCGCTTTGGTGAAATGGAACGAGATTCACTCCTTGCTCATGGAGCATCATATTTGCTGCATGATAGACTCCATACAAGCTCAGATCATCACATTGCAGATGTGTGCTCTGAATGTGGAAGTGTCCTAACATCATCTGTTATTCAGCCGCCAAAACGAGCAGTGCAAGCAATTCTGAAACAGCTACCTGCTAGAGAACCCAAAAAGGTTACTTGTGTCGCTTGTCGTTCAAGTAAAGGAATGGAGACTGTTGCTATGCCTTATGTGTTTAAATATTTAGCGGCTGAACTGGCAGCCATGAACATCAAGATGACCCTCAAACTAAGTAATGAGGCTGGAGCTTGATACACATTTCTGGCGGTTGGAATATTCTAATGTCTAGATGCAAGCTGGGAGCTTGATTACCATTTCATCTGTACCTGTAGTTTCTCAATGTGCAACATGTCCAAAAAGGTGTTTGCAGCATCAGATAACTGGATTCTGGCAACAGTGATTTGGTTTTATAATTTGAAGGCCAGTTTCCTAGTGGGCTACTGAGAAAGAGAGTGTGCTGCAAA</gDNA_template>
            <first_frame> I  S  A  P  A  E  E  G  N  D  L  E  L  I  G  P  F  E  Q  :  V  Y  M  E  I  S  C  P  D  G  G  D  G  G  R  K  T  L  F  P  A  T  H  R  E  I  H  P  T  N  I  L  S  V  V  G  N  L  T  P  W  S  D  H  N  Q  S  P  R  N  M  Y  Q  C  Q  :  M  G  K  Q  T  M  G  F  S  S  Q  A  L  N  C  R  A  D  Q  K  L  Y  H  L  Q  :  T  P  Q  T  P  I  V  R  T  K  A  Y  E  K  Y  C  V  D  D  Y  P  L  G  T  N  A  I  V  A  V  L  A  Y  S  G :   Y  D  M  E  D  A  M  V  L  N  K  S  S  V  D  R  G  M  C  H  G  H  I  Y  Q  :  T  E  T  I  D  L  T  E  Q  S  A  K  S  D  R  A  Q  R  L  F  R  R  S  N  L  D  K  S  S  H  Q  L  I  D  S  D  G  L  P  Y  V  G  Q  :  R  I  N  P  N  E  P  Y  C  S  I  Y  N  E  I  T  S  Q  T  T  C  M  K  L  K  G  S  E  P  V  V  V  D  Y  V  A  V  D  V  K  N  K  A  H  L  Q  K  :  A  N  I  R  F  R  R  S  R  N  P  V  I  G  D  K  F  S  S  R  H  G  Q  K  G  V  C  S  Q  L  W  P  D  V  D  M  P  F  S  A  V  T  G  M  R  P  D  L  I  I  N  P  H  A  F  P  S  R  M  T  I  A  M  L  L  E  S  I  A  A  K  :  G  G  A  L  H  G  K  F  V  D  A  T  P  F  S  N  T  M  K  E  S  E  S  E  S  S  S  L  V  D  D  L  G  S  M  L  A  V  C  G  F  N  H  H  G  T  E  V  L  Y  S  G  V  Y  G  T  E  L  T  C  R  I  F  I  G  P  V  Y  Y  Q  R  L  R  H  M  V  S  D  K  F  Q  :  V  R  S  T  G  Q  V  D  H  I  T  R  Q  P  I  K  G  R  K  R  G  G  G  V  R  F  G  E  M  E  R  D  S  L  L  A  H  G  A  S  Y  L  L  H  D  R  L  H  T  S  S  D  H  H  I  A  D  V  C  S  E  C  G  S  V  L  T  S  S  V  I  Q  P  P  K  R  A  V  Q  A  I  L  K  Q  L  P  A  R  E  P  K  K  V  T  C  V  A  C  R  S  S  K  G  M  E  T  V  A  M  P  Y  V  F  K  Y  L  A  A  E  L  A  A  M  N  I  K  M  T  L  K  L  S  N  E  A  G  A  *  Y  T  F  L  A  V  G  I  F  *  C  L  D  A  S  W  E  L  D  Y  H  F  I  C  T  C  S  F  S  M  C  N  M  S  K  K  V  F  A  A  S  D  N  W  I  L  A  T  V  I  W  F  Y  N  L  K  A  S  F  L  V  G  Y  *  E  R  E  C  A  A   </first_frame>
            <second_frame>  S  L  R  L  L  K  R  A  M  I  L  N  S  L  D  P  L  N  R :   C  I  W  R  *  A  A  R  M  V  E  M  E  E  G  K  P  Y  S  L  P  H  I  E  K  F  I  Q  L  I  F  *  V  L  L  A  I  L  H  L  G  L  I  I  I  R  V  H  V  I  C  I  N  V  R :   W  V  N  K  Q  W  V  S  P  H  K  H  *  I  V  V  L  I  K  S  Y  I  T  F  R :   L  L  K  P  Q  L  Y  A  Q  K  L  M  R  S  I  V  L  M  T  I  H  *  E  Q  M  Q  L  W  Q  F  W  L  I  Q   : D  M  T  W  K  T  L  W  S  *  I  N  H  L  *  I  V  V  C  V  M  G  I  Y  T  R :   Q  K  P  L  T  *  L  S  K  A  P  N  L  I  V  L  R  D  C  L  E  E  A  I  W  I  S  R  L  I  S  *  L  I  L  M  V  F  H  T  W  D  R :   G  L  I  Q  M  S  H  I  V  V  F  T  M  K  *  P  V  R  Q  L  V  *  S  *  R  V  R  S  L  L  L  L  I  M  L  L  S  M  *  K  I  K  H  I  C  R  R :   R  I  Y  V  L  G  A  P  G  I  L  *  L  V  I  N  L  A  A  D  M  G  K  R  V  F  A  L  N  Y  G  L  M  L  I  C  P  S  Q  Q  L  Q  A  *  G  Q  I  L  L  L  I  L  M  L  S  L  Q  G  *  Q  L  L  C  C  W  S  R  L  L  L  R :   G  V  L  Y  M  G  S  L  L  M  Q  R  R  S  L  T  Q  *  R  N  Q  N  R  N  P  V  H  L  W  M  T  L  V  P  C  *  R  F  V  A  S  I  T  M  V  R  K  Y  Y  I  V  E  Y  M  G  Q  N  *  L  V  E  Y  L  L  D  L  F  I  I  S  V  C  D  T  W  F  L  I  N  F  R :   S  V  L  L  D  R  *  T  I  S  L  G  S  L  S  R  G  E  S  V  V  E  V  S  A  L  V  K  W  N  E  I  H  S  L  L  M  E  H  H  I  C  C  M  I  D  S  I  Q  A  Q  I  I  T  L  Q  M  C  A  L  N  V  E  V  S  *  H  H  L  L  F  S  R  Q  N  E  Q  C  K  Q  F  *  N  S  Y  L  L  E  N  P  K  R  L  L  V  S  L  V  V  Q  V  K  E  W  R  L  L  L  C  L  M  C  L  N  I  *  R  L  N  W  Q  P  *  T  S  R  *  P  S  N  *  V  M  R  L  E  L  D  T  H  F  W  R  L  E  Y  S  N  V  *  M  Q  A  G  S  L  I  T  I  S  S  V  P  V  V  S  Q  C  A  T  C  P  K  R  C  L  Q  H  Q  I  T  G  F  W  Q  Q  *  F  G  F  I  I  *  R  P  V  S  *  W  A  T  E  K  E  S  V  L  Q  </second_frame>
            <third_frame>   L  C  A  C  *  R  G  Q  *  S  *  T  H  W  T  L  *  T   : G  V  Y  G  D  K  L  P  G  W  W  R  W  R  K  E  N  L  I  P  C  H  T  S  R  N  S  S  N  *  Y  F  E  C  C  W  Q  S  Y  T  L  V  *  S  *  S  E  S  T  *  Y  V  S  M  S   : D  G  *  T  N  N  G  F  L  L  T  S  I  K  L  S  C  *  S  K  V  I  S  P  S   : D  S  S  N  P  N  C  T  H  K  S  L  *  E  V  L  C  *  *  L  S  I  R  N  K  C  N  C  G  S  F  G  L  F  R  :  I  *  H  G  R  R  Y  G  L  K  *  I  I  C  R  S  W  Y  V  S  W  A  Y  I  P   : D  R  N  H  *  L  D  *  A  K  R  Q  I  *  S  C  S  E  I  V  *  K  K  Q  F  G  *  V  V  S  S  A  D  *  F  *  W  S  S  I  R  G  T   : E  D  *  S  K  *  A  I  L  *  Y  L  Q  *  N  N  Q  S  D  N  L  Y  E  V  E  G  F  G  A  C  C  C  *  L  C  C  C  R  C  E  K  *  S  T  S  A  E   : G  E  Y  T  F  *  A  L  Q  E  S  C  N  W  *  *  I  *  Q  P  T  W  A  K  G  C  L  L  S  I  M  A  *  C  *  Y  A  L  L  S  S  Y  R  H  E  A  R  S  Y  Y  *  S  S  C  F  P  F  K  D  D  N  C  Y  A  V  G  V  D  C  C  *   : G  G  C  F  T  W  E  V  C  *  C  N  A  V  L  *  H  N  E  G  I  R  I  G  I  Q  F  T  C  G  *  P  W  F  H  V  S  G  L  W  L  Q  S  P  W  Y  G  S  T  I  *  W  S  I  W  D  R  T  D  L  S  N  I  Y  W  T  C  L  L  S  A  S  A  T  H  G  F  *  *  I  S   : G  P  F  Y  W  T  G  R  P  Y  H  S  A  A  Y  Q  G  E  K  A  W  W  R  C  P  L  W  *  N  G  T  R  F  T  P  C  S  W  S  I  I  F  A  A  *  *  T  P  Y  K  L  R  S  S  H  C  R  C  V  L  *  M  W  K  C  P  N  I  I  C  Y  S  A  A  K  T  S  S  A  S  N  S  E  T  A  T  C  *  R  T  Q  K  G  Y  L  C  R  L  S  F  K  *  R  N  G  D  C  C  Y  A  L  C  V  *  I  F  S  G  *  T  G  S  H  E  H  Q  D  D  P  Q  T  K  *  *  G  W  S  L  I  H  I  S  G  G  W  N  I  L  M  S  R  C  K  L  G  A  *  L  P  F  H  L  Y  L  *  F  L  N  V  Q  H  V  Q  K  G  V  C  S  I  R  *  L  D  S  G  N  S  D  L  V  L  *  F  E  G  Q  F  P  S  G  L  L  R  K  R  V  C  C  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="30" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127118" stop="127062"/>
                    <exon start="126925" stop="126761"/>
                    <exon start="126665" stop="126591"/>
                    <exon start="125828" stop="125725"/>
                    <exon start="125650" stop="125575"/>
                    <exon start="125107" stop="124979"/>
                    <exon start="124903" stop="124763"/>
                    <exon start="124218" stop="124006"/>
                    <exon start="123770" stop="123528"/>
                    <exon start="123035" stop="122622"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1614</number_coding_nucleotides>
                  <number_encoded_amino_acids>538</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISAPAEEGNDLELIGPFEQVYMEISCPDGGDGGRKTLFPATHREIHPTNILSVVGNLTPWSDHNQSPRNMYQCQMGKQTMGFSSQALNCRADQKLYHLQTPQTPIVRTKAYEKYCVDDYPLGTNAIVAVLAYSGYDMEDAMVLNKSSVDRGMCHGHIYQTETIDLTEQSAKSDRAQRLFRRSNLDKSSHQLIDSDGLPYVGQRINPNEPYCSIYNEITSQTTCMKLKGSEPVVVDYVAVDVKNKAHLQKANIRFRRSRNPVIGDKFSSRHGQKGVCSQLWPDVDMPFSAVTGMRPDLIINPHAFPSRMTIAMLLESIAAKGGALHGKFVDATPFSNTMKESESESSSLVDDLGSMLAVCGFNHHGTEVLYSGVYGTELTCRIFIGPVYYQRLRHMVSDKFQVRSTGQVDHITRQPIKGRKRGGGVRFGEMERDSLLAHGASYLLHDRLHTSSDHHIADVCSECGSVLTSSVIQPPKRAVQAILKQLPAREPKKVTCVACRSSKGMETVAMPYVFKYLAAELAAMNIKMTLKLSNEAGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="134650" e_stop="134493"/>
            <exon e_start="134408" e_stop="134367"/>
            <exon e_start="130264" e_stop="130258"/>
            <exon e_start="124091" e_stop="124006"/>
            <exon e_start="123770" e_stop="123528"/>
            <exon e_start="123035" e_stop="122410"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.771" acc_prob="0.000" e_score="0.857"/>
          <exon-intron don_prob="0.999" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.909" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="134650" e_stop="134493" e_length="158"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.978">
            <gDNA_intron_boundary i_start="134492" i_stop="134409" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="134408" e_stop="134367" e_length="42"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.888">
            <gDNA_intron_boundary i_start="134366" i_stop="130265" i_length="4102"/>
          </intron>
          <exon e_serial="3" e_score="0.857">
            <gDNA_exon_boundary e_start="130264" e_stop="130258" e_length="7"/>
          </exon>
          <intron i_serial="3" don_prob="0.771" acc_prob="0.000">
            <gDNA_intron_boundary i_start="130257" i_stop="124092" i_length="6166"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="124091" e_stop="124006" e_length="86"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.973">
            <gDNA_intron_boundary i_start="124005" i_stop="123771" i_length="235"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="123770" e_stop="123528" e_length="243"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.909">
            <gDNA_intron_boundary i_start="123527" i_stop="123036" i_length="492"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="123035" e_stop="122410" e_length="626"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134650" stop="134493"/>
              <exon start="134408" stop="134367"/>
              <exon start="130264" stop="130258"/>
              <exon start="124091" stop="124006"/>
              <exon start="123770" stop="123547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123604" stop="123528"/>
              <exon start="123035" stop="122410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122853" stop="122503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602499" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="30" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAGATATACGTCAATTTAACATGTTGCTACAATGAGGAATGTGACCGTGTAAAGGGATCTGTCGGCACCCAGCTTGTTGGTGAAAGAGCAAAAATTATCCTGGATGAAGTTCAGGCCCTATCTCTTTTTACCCGAGCACAGTGCCTGCGACATATTG : GGGAGCATTTCCAACCTGTTGTGATCGGAATGCAAAATGATA : GTAACAG : GCATGAGGCCAGATCTTATTATTAATCCTCATGCTTTCCCTTCAAGGATGACAATTGCTATGCTGTTGGAGTCGATTGCTGCTAAG : GGGGGTGCTTTACATGGGAAGTTTGTTGATGCAACGCCGTTCTCTAACACAATGAAGGAATCAGAATCGGAATCCAGTTCACTTGTGGATGACCTTGGTTCCATGTTAGCGGTTTGTGGCTTCAATCACCATGGTACGGAAGTACTATATAGTGGAGTATATGGGACAGAACTGACTTGTCGAATATTTATTGGACCTGTTTATTATCAGCGTCTGCGACACATGGTTTCTGATAAATTTCAG : GTCCGTTCTACTGGACAGGTAGACCATATCACTCGGCAGCCTATCAAGGGGAGAAAGCGTGGTGGAGGTGTCCGCTTTGGTGAAATGGAACGAGATTCACTCCTTGCTCATGGAGCATCATATTTGCTGCATGATAGACTCCATACAAGCTCAGATCATCACATTGCAGATGTGTGCTCTGAATGTGGAAGTGTCCTAACATCATCTGTTATTCAGCCGCCAAAACGAGCAGTGCAAGCAATTCTGAAACAGCTACCTGCTAGAGAACCCAAAAAGGTTACTTGTGTCGCTTGTCGTTCAAGTAAAGGAATGGAGACTGTTGCTATGCCTTATGTGTTTAAATATTTAGCGGCTGAACTGGCAGCCATGAACATCAAGATGACCCTCAAACTAAGTAATGAGGCTGGAGCTTGATACACATTTCTGGCGGTTGGAATATTCTAATGTCTAGATGCAAGCTGGGAGCTTGATTACCATTTCATCTGTACCTGTAGTTTCTCAATGTGCAACATGTCCAAAAAGGTGTTTGCAGCATCAGATAACTGGATTCTGGCAACAGTGATTTGGTTTTATAATTTGAAGGCCAGTTTCCTAGTGGGCTACTGAGAAAGAGAGTGTGCTGCAAA</gDNA_template>
            <first_frame> R  D  I  R  Q  F  N  M  L  L  Q  *  G  M  *  P  C  K  G  I  C  R  H  P  A  C  W  *  K  S  K  N  Y  P  G  *  S  S  G  P  I  S  F  Y  P  S  T  V  P  A  T  Y  W :   G  A  F  P  T  C  C  D  R  N  A  K  *  * :   *  Q  :  A  *  G  Q  I  L  L  L  I  L  M  L  S  L  Q  G  *  Q  L  L  C  C  W  S  R  L  L  L  R :   G  V  L  Y  M  G  S  L  L  M  Q  R  R  S  L  T  Q  *  R  N  Q  N  R  N  P  V  H  L  W  M  T  L  V  P  C  *  R  F  V  A  S  I  T  M  V  R  K  Y  Y  I  V  E  Y  M  G  Q  N  *  L  V  E  Y  L  L  D  L  F  I  I  S  V  C  D  T  W  F  L  I  N  F  R :   S  V  L  L  D  R  *  T  I  S  L  G  S  L  S  R  G  E  S  V  V  E  V  S  A  L  V  K  W  N  E  I  H  S  L  L  M  E  H  H  I  C  C  M  I  D  S  I  Q  A  Q  I  I  T  L  Q  M  C  A  L  N  V  E  V  S  *  H  H  L  L  F  S  R  Q  N  E  Q  C  K  Q  F  *  N  S  Y  L  L  E  N  P  K  R  L  L  V  S  L  V  V  Q  V  K  E  W  R  L  L  L  C  L  M  C  L  N  I  *  R  L  N  W  Q  P  *  T  S  R  *  P  S  N  *  V  M  R  L  E  L  D  T  H  F  W  R  L  E  Y  S  N  V  *  M  Q  A  G  S  L  I  T  I  S  S  V  P  V  V  S  Q  C  A  T  C  P  K  R  C  L  Q  H  Q  I  T  G  F  W  Q  Q  *  F  G  F  I  I  *  R  P  V  S  *  W  A  T  E  K  E  S  V  L  Q  </first_frame>
            <second_frame>  E  I  Y  V  N  L  T  C  C  Y  N  E  E  C  D  R  V  K  G  S  V  G  T  Q  L  V  G  E  R  A  K  I  I  L  D  E  V  Q  A  L  S  L  F  T  R  A  Q  C  L  R  H  I   : G  E  H  F  Q  P  V  V  I  G  M  Q  N  D   : S  N  R :   H  E  A  R  S  Y  Y  *  S  S  C  F  P  F  K  D  D  N  C  Y  A  V  G  V  D  C  C  *   : G  G  C  F  T  W  E  V  C  *  C  N  A  V  L  *  H  N  E  G  I  R  I  G  I  Q  F  T  C  G  *  P  W  F  H  V  S  G  L  W  L  Q  S  P  W  Y  G  S  T  I  *  W  S  I  W  D  R  T  D  L  S  N  I  Y  W  T  C  L  L  S  A  S  A  T  H  G  F  *  *  I  S   : G  P  F  Y  W  T  G  R  P  Y  H  S  A  A  Y  Q  G  E  K  A  W  W  R  C  P  L  W  *  N  G  T  R  F  T  P  C  S  W  S  I  I  F  A  A  *  *  T  P  Y  K  L  R  S  S  H  C  R  C  V  L  *  M  W  K  C  P  N  I  I  C  Y  S  A  A  K  T  S  S  A  S  N  S  E  T  A  T  C  *  R  T  Q  K  G  Y  L  C  R  L  S  F  K  *  R  N  G  D  C  C  Y  A  L  C  V  *  I  F  S  G  *  T  G  S  H  E  H  Q  D  D  P  Q  T  K  *  *  G  W  S  L  I  H  I  S  G  G  W  N  I  L  M  S  R  C  K  L  G  A  *  L  P  F  H  L  Y  L  *  F  L  N  V  Q  H  V  Q  K  G  V  C  S  I  R  *  L  D  S  G  N  S  D  L  V  L  *  F  E  G  Q  F  P  S  G  L  L  R  K  R  V  C  C  K </second_frame>
            <third_frame>   R  Y  T  S  I  *  H  V  A  T  M  R  N  V  T  V  *  R  D  L  S  A  P  S  L  L  V  K  E  Q  K  L  S  W  M  K  F  R  P  Y  L  F  L  P  E  H  S  A  C  D  I  L  :  G  S  I  S  N  L  L  *  S  E  C  K  M  I  :  V  T   : G  M  R  P  D  L  I  I  N  P  H  A  F  P  S  R  M  T  I  A  M  L  L  E  S  I  A  A  K  :  G  G  A  L  H  G  K  F  V  D  A  T  P  F  S  N  T  M  K  E  S  E  S  E  S  S  S  L  V  D  D  L  G  S  M  L  A  V  C  G  F  N  H  H  G  T  E  V  L  Y  S  G  V  Y  G  T  E  L  T  C  R  I  F  I  G  P  V  Y  Y  Q  R  L  R  H  M  V  S  D  K  F  Q  :  V  R  S  T  G  Q  V  D  H  I  T  R  Q  P  I  K  G  R  K  R  G  G  G  V  R  F  G  E  M  E  R  D  S  L  L  A  H  G  A  S  Y  L  L  H  D  R  L  H  T  S  S  D  H  H  I  A  D  V  C  S  E  C  G  S  V  L  T  S  S  V  I  Q  P  P  K  R  A  V  Q  A  I  L  K  Q  L  P  A  R  E  P  K  K  V  T  C  V  A  C  R  S  S  K  G  M  E  T  V  A  M  P  Y  V  F  K  Y  L  A  A  E  L  A  A  M  N  I  K  M  T  L  K  L  S  N  E  A  G  A  *  Y  T  F  L  A  V  G  I  F  *  C  L  D  A  S  W  E  L  D  Y  H  F  I  C  T  C  S  F  S  M  C  N  M  S  K  K  V  F  A  A  S  D  N  W  I  L  A  T  V  I  W  F  Y  N  L  K  A  S  F  L  V  G  Y  *  E  R  E  C  A  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323C14.1" strand="-"/>
                <serials PGL_serial="30" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134384" stop="134367"/>
                    <exon start="130264" stop="130258"/>
                    <exon start="124091" stop="124006"/>
                    <exon start="123770" stop="123528"/>
                    <exon start="123035" stop="122622"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SECKMIVTGMRPDLIINPHAFPSRMTIAMLLESIAAKGGALHGKFVDATPFSNTMKESESESSSLVDDLGSMLAVCGFNHHGTEVLYSGVYGTELTCRIFIGPVYYQRLRHMVSDKFQVRSTGQVDHITRQPIKGRKRGGGVRFGEMERDSLLAHGASYLLHDRLHTSSDHHIADVCSECGSVLTSSVIQPPKRAVQAILKQLPAREPKKVTCVACRSSKGMETVAMPYVFKYLAAELAAMNIKMTLKLSNEAGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 885 chains have been computed
$ 
$ memory statistics:
$ 1487376 bytes spliced alignments in total
$ 160 spliced alignments have been stored
$ 9296 bytes was the average size of a spliced alignment
$ 43008 bytes predicted gene locations in total
$ 30 predicted gene locations have been stored
$ 1433 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 1059 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 06:04:21
-->
