<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 08:40:26"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8796-2" ref_strand="+" ref_description="SGN-M8796-2 C2_At5g22340-2 [cosii_markers]">
      <seq>aaagagtgaagcaaaattttcgaactccaaaatatatactgtatatgaattctgtatcatacatacgaactgaaatggtgctaccattgtgtattcccaataactctcaccttctctcccctttaagttcattcgatttctctcctccgccaccgcaacgccgccgtgcacggcccagagtcacgactgtactatccgtcctcaaaacatctcgacccgtgagtgaagtcacagtggatgatgttctgcgaggtttcttgagggaaagagagttaaatggggatgttatctcgagaatttctgatagaatctggctgaggaatgtggctggttttgattctgcagaagctggaagttggacaagtgaggctactcaatcagaggaggtatcaggggaagataatgaaggtgggtttttgaagttgaaaagtaccaaagagtggctttcaggtgatgccacggcgccagttaataaaaagaggacctttaaggaaatacaagatgacagggaaagaacgaaaaggctaaactttctccaatatgaagctcttaagagggagctactttacttaacggtgggcattgggactgcttgcagtggatattgtttggtagttttatcagtccaggtatttggtagatttttttacatgttctgaggtcatgagacattctataatagaaggcatagagtgtttcgtcacaaccattgatggctatgcttagttgtactatatttatctaaatcttcacttgagctaggaaagcagtggagagcacatgcgtgtaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="3674" stop="6460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3974" g_stop="4151" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="219" r_length="178" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4152" i_stop="4700" i_length="549">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.744" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4701" g_stop="4867" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="386" r_length="167" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4868" i_stop="4955" i_length="88">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4956" g_stop="5060" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="491" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5061" i_stop="5161" i_length="101">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5162" g_stop="5218" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="548" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5219" i_stop="5915" i_length="697">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5916" g_stop="6160" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="792" r_length="244" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-M8796-2" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8796-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3974" e_stop="4151"/>
          <exon e_start="4701" e_stop="4867"/>
          <exon e_start="4956" e_stop="5060"/>
          <exon e_start="5162" e_stop="5218"/>
          <exon e_start="5916" e_stop="6160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATAAATTCTGTATCATACATACGAACTGAAATGGTGCTGCCATTGTGTATTCCCAATCACTCTCACTTCATCTCTCCTTTAAGCTCAGTCGAATTCTCTCCTCCGCCACCGCAGCGGCGCCGTGCACGGCCCAGATTCACGACTGTACTATCCGTACTCAAAACCTCTCGACCCGGTAATGAATATACATGTTTTATTGAAAGAATTTTGAATTTTGTTACTACCCATTTGAGTAATTTGCTCGATAGTTACCTGTACTGAGAGAATTGTGAATGTTGTCACTACCCATTTGAGTAATTTGCATTTCTTTTTTCTTCTTGCTGAAGTGATTCGGTAGCTGGAAACTCAATAGTTACTTTTTTTAAGAGAGAATTGTGAATTTTATAACCACCCATTTGAGCAATTTGCTGTTTTTCTTCTTCTTGTTCAAGTGACACTCTGTAGCTGGAAACTCAGTAGTTGTCTTTTTTGGAGAATTGTGAAATTTATCAATTAGCGTCTTTTTTCGTGTTCTTTTTCAACTGACCCAGTAGCTGGTAACTCAACATTACTATTTCTGAAAGCATTGTGGAGTTTTTAACTTCCCATTTGAGTAATTTGTGTTTTTTAGTATTCTTGCCTAGTGACTTTGTTGCTGGAAACTAAAGAATGATGCTTTTTGGAAGCATTGTGAAATTTTTACTGCCCATTTGTGTAATTTCTTTTTAATCTTCTTGTCCACAAGTGAGTGAAGTCACAGTGGATGACGCTCTACGAGATTTCTTGAGGGATAGAGAGTTAAAGGGGGATGTTATCTCGAGAATTTCTGATAGAATCTGGCTGAGGAACGTGGCTGGTTTTGATTCGGCAGAAGCTGGGAGTGGGACAAGTGAGGCTACTCAATCGGAGGAGGTATTTTGTTGATTACCCTTCCGTTTTCCAGGTTTTTAGTATTGGTTTGCTTGCTTTTGAACTTTGAAACAAAAGGATACCAATGCAGGTATCAGGGGAAGATAATGAAGGTGGGTTTTTGAAGTTGAAAAGTACCAAAGAGTGGCTTTCAGGTGACGCCACGGCGCCAGTTAATAAAAAGAGGACATTTAAGGTGTTCATTAATAAGTTTTTGTTCTTTTTAATGGTGTTTTGAGTATTGTGATTCATGAGTACTTAGATTTTTGCCATTGATGCTTCTAATGATATGCACAGGAAATACAAGATGACAGGGAAAGAACGAAAAGGCTAAACTTTCTCCAATATGAAGCTGTACGTCCCGGTCAAGCATCTATGTTCTTGCTATTTTATATTCTTAAACATTTATAATTGCATAGCATTGGAATTCAAATACCGCTGTTTTAGAATGTGGAGACTCTACTCATAATATTTTTTGCTGGCCATCATCCTTATGACCTTATTGTGGTTCATGTTGTTTTATTTACTTTGGTGAAAGGTTGTCCAAAAGAAAAGGGGCTTCTTGATATTGCATTTGCCAATTTTTGACGTCTTAGATGGAGGACATTAGTAACACCCTGAGATTTTTCTTCTGTGTTTGTATTATCTCCTACTTCCAAAAATCTTTGCATGTCCTTATTGAAGAAAATGGGATATATTGTAGAATTTTATTGATGAAAGGTAGTCTGAATGGTTCTATGAGCACCTACACTATGCATGCATAGTGTGATCTGTTCAATGATTTATATAACAAGTATTTACCAACTTTTAAGAGTAAAATGAGTAGTTAAGGGCTGTTACAAAATCCTGCTGCTCCGAAGAGTATGAAAAGTGACAAGGAAAGGATTTCAAATGTTATTCTCTGACTATGGAAACATGGTATACTGAAGTTGTATCCAATTATAAGAGAGTATCTTCGCTGAGATACACAAAACAGATGTCTGCAAATGAATTTAACTATGTTTTGTTCTAAATGTACAAGGCTTAGATCATTTTTCTGTTCCTCTTGCAGCTTAAGAGGGAGCTACTTTTCTTAACGGTGGGCATTGGGACTGCTTGCACTGGATACTGTTTGGTAGTTTTATCAGTCCAGGTATTTGGTAGATTTTTTTTACATGTTCTGAGGTCATGAGACATTCTATAATAGAAGGCATATAGTGTTTCCTCACAACCATTGGTGGCTATGCTTAGTTGTGCTATATTTATCTAGATCTTCACTTGAGCTAGAAAAGCAATGGAGAGCACATGCGTGTAAAT</genome_strand>
        <mrna_strand>TATATGAATTCTGTATCATACATACGAACTGAAATGGTGCTACCATTGTGTATTCCCAATAACTCTCACCTTCTCTCCCCTTTAAGTTCATTCGATTTCTCTCCTCCGCCACCGCAACGCCGCCGTGCACGGCCCAGAGTCACGACTGTACTATCCGTCCTCAAAACATCTCGACCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTGAAGTCACAGTGGATGATGTTCTGCGAGGTTTCTTGAGGGAAAGAGAGTTAAATGGGGATGTTATCTCGAGAATTTCTGATAGAATCTGGCTGAGGAATGTGGCTGGTTTTGATTCTGCAGAAGCTGGAAGTTGGACAAGTGAGGCTACTCAATCAGAGGAG........................................................................................GTATCAGGGGAAGATAATGAAGGTGGGTTTTTGAAGTTGAAAAGTACCAAAGAGTGGCTTTCAGGTGATGCCACGGCGCCAGTTAATAAAAAGAGGACCTTTAAG.....................................................................................................GAAATACAAGATGACAGGGAAAGAACGAAAAGGCTAAACTTTCTCCAATATGAAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAAGAGGGAGCTACTTTACTTAACGGTGGGCATTGGGACTGCTTGCAGTGGATATTGTTTGGTAGTTTTATCAGTCCAGGTATTTGGTAGA-TTTTTTTACATGTTCTGAGGTCATGAGACATTCTATAATAGAAGGCATAGAGTGTTTCGTCACAACCATTGATGGCTATGCTTAGTTGTACTATATTTATCTAAATCTTCACTTGAGCTAGGAAAGCAGTGGAGAGCACATGCGTGTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1908" ref_strand="+" ref_description="SGN-M1908 T1297 [cos_markers]">
      <seq>ttaaatggggatgttatctcgagaatttctgatagaatctggctgaggaatgtggctggttttgattcggcagaagctgggagtgggacaagtgaggctactcaatcagaggaggtatcaggggaagataatgaaggcgggtttttgaagttgaaaagtaccaaagagtggctttcaggtgacgccacggcgccagttaataaaaagaggacatttaaggaaatacaagatgacagggaaagaacgaaaaggctaaactttctccaatatgaagctcttaagagggagctacttttcttaacggtgggcattgggactgcttgcactggatattgtttggtagttttatcagtccaggctgctctgagctatgcgacaggagttgttttcagttgcctgtactatcagctcctctgccaacatgcagacaacctctcacaagaaacagntcctgatattttcacgaaaaagaaacttaagaaaatcggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="4454" stop="7156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4754" g_stop="4867" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4868" i_stop="4955" i_length="88">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4956" g_stop="5060" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="219" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5061" i_stop="5161" i_length="101">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5162" g_stop="5218" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="276" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5219" i_stop="5915" i_length="697">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5916" g_stop="5996" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="357" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5997" i_stop="6460" i_length="464">
            <donor d_prob="0.587" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6461" g_stop="6495" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="392" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6496" i_stop="6766" i_length="271">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6767" g_stop="6856" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="482" r_length="90" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-M1908" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M1908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4754" e_stop="4867"/>
          <exon e_start="4956" e_stop="5060"/>
          <exon e_start="5162" e_stop="5218"/>
          <exon e_start="5916" e_stop="5996"/>
          <exon e_start="6461" e_stop="6495"/>
          <exon e_start="6767" e_stop="6856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGGGGGATGTTATCTCGAGAATTTCTGATAGAATCTGGCTGAGGAACGTGGCTGGTTTTGATTCGGCAGAAGCTGGGAGTGGGACAAGTGAGGCTACTCAATCGGAGGAGGTATTTTGTTGATTACCCTTCCGTTTTCCAGGTTTTTAGTATTGGTTTGCTTGCTTTTGAACTTTGAAACAAAAGGATACCAATGCAGGTATCAGGGGAAGATAATGAAGGTGGGTTTTTGAAGTTGAAAAGTACCAAAGAGTGGCTTTCAGGTGACGCCACGGCGCCAGTTAATAAAAAGAGGACATTTAAGGTGTTCATTAATAAGTTTTTGTTCTTTTTAATGGTGTTTTGAGTATTGTGATTCATGAGTACTTAGATTTTTGCCATTGATGCTTCTAATGATATGCACAGGAAATACAAGATGACAGGGAAAGAACGAAAAGGCTAAACTTTCTCCAATATGAAGCTGTACGTCCCGGTCAAGCATCTATGTTCTTGCTATTTTATATTCTTAAACATTTATAATTGCATAGCATTGGAATTCAAATACCGCTGTTTTAGAATGTGGAGACTCTACTCATAATATTTTTTGCTGGCCATCATCCTTATGACCTTATTGTGGTTCATGTTGTTTTATTTACTTTGGTGAAAGGTTGTCCAAAAGAAAAGGGGCTTCTTGATATTGCATTTGCCAATTTTTGACGTCTTAGATGGAGGACATTAGTAACACCCTGAGATTTTTCTTCTGTGTTTGTATTATCTCCTACTTCCAAAAATCTTTGCATGTCCTTATTGAAGAAAATGGGATATATTGTAGAATTTTATTGATGAAAGGTAGTCTGAATGGTTCTATGAGCACCTACACTATGCATGCATAGTGTGATCTGTTCAATGATTTATATAACAAGTATTTACCAACTTTTAAGAGTAAAATGAGTAGTTAAGGGCTGTTACAAAATCCTGCTGCTCCGAAGAGTATGAAAAGTGACAAGGAAAGGATTTCAAATGTTATTCTCTGACTATGGAAACATGGTATACTGAAGTTGTATCCAATTATAAGAGAGTATCTTCGCTGAGATACACAAAACAGATGTCTGCAAATGAATTTAACTATGTTTTGTTCTAAATGTACAAGGCTTAGATCATTTTTCTGTTCCTCTTGCAGCTTAAGAGGGAGCTACTTTTCTTAACGGTGGGCATTGGGACTGCTTGCACTGGATACTGTTTGGTAGTTTTATCAGTCCAGGTATTTGGTAGATTTTTTTTACATGTTCTGAGGTCATGAGACATTCTATAATAGAAGGCATATAGTGTTTCCTCACAACCATTGGTGGCTATGCTTAGTTGTGCTATATTTATCTAGATCTTCACTTGAGCTAGAAAAGCAATGGAGAGCACATGCGTGTAAATCACAATTAGTGATTGATTTACTGCAACCGGGAAAGCTTGCAATGGAGAGAGAGCCACTGAGTTCATACTTTCTTACAGTTACTATTTTAATAATAACCACCCAACCAACTTAGTAGAACAATTTCTGTTCCAATTAAATGTTCTTCCCATTTCTACTGCTTACTTGATGAGAAAAAACTGGTTTGGTTTTGGTAACCTTTTTCACTGGGTTATTCATCTGTTCTATCTTATGAAAGAGGTTTCAGGTTAGAAATATTTTCATCCGCGGTGGACTGACAGATATACTTATTCAATCTGTAGGCTGCTCTGAGCTATGCGACAGGAGTTGTTTTCAGGTTTGTTTGTAACTATTTTTAACTCCATCTATCCTGTTTACCGATCCTTCCAGTACTTGTAAACAGCCCAATTTTGCACATTTAGGCAGTTAAAAATGGATAGCTTATAATATCTAGAAATATGCTTTTACATTATCTAGACCTTACAAGTATGTTTATGGTAGAATCTTTACATTTGAACTACTCTTTTGCTTATGTTTCCCATAAAACTGGCTGCATCTTCAATTCGGTTTATTTCTCTGGGTAATTTTGTCTGTAATTTCTTATGCAGTTGCCTGTACTATCAGCTCCTCTGCCAACATGCAGACAACCTCTCACAAGAGACAGTTCCTGATATTTTCACGAAAAAGAAACTTAAGAA</genome_strand>
        <mrna_strand>TTAAATGGGGATGTTATCTCGAGAATTTCTGATAGAATCTGGCTGAGGAATGTGGCTGGTTTTGATTCGGCAGAAGCTGGGAGTGGGACAAGTGAGGCTACTCAATCAGAGGAG........................................................................................GTATCAGGGGAAGATAATGAAGGCGGGTTTTTGAAGTTGAAAAGTACCAAAGAGTGGCTTTCAGGTGACGCCACGGCGCCAGTTAATAAAAAGAGGACATTTAAG.....................................................................................................GAAATACAAGATGACAGGGAAAGAACGAAAAGGCTAAACTTTCTCCAATATGAAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAAGAGGGAGCTACTTTTCTTAACGGTGGGCATTGGGACTGCTTGCACTGGATATTGTTTGGTAGTTTTATCAGTCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTCTGAGCTATGCGACAGGAGTTGTTTTCAG...............................................................................................................................................................................................................................................................................TTGCCTGTACTATCAGCTCCTCTGCCAACATGCAGACAACCTCTCACAAGAAACAGNTCCTGATATTTTCACGAAAAAGAAACTTAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M56-R" ref_strand="+" ref_description="SGN-M56-R TG286-R [rflp_markers_reverse]">
      <seq>cattgtcagttggaagtgatagcaatggaagtggtgttgtggcacttcttgagatagctaggctgttttctgttctgtattcaaatcctaaaacaaggggtagatataacttactttttggattgacgtctggtgggccttataacttcaacggaactcagaaggtgcactactccttcctgagcattttctatgcataagttgcagtatatcttgctgtgtcttttcaatctgtagtttctttctcttcagtggcttcgaagttttgaccaacgcctacgggagagtatcgactatgccatttgcttgaatagtcttggctccttgggcaatgagttacatcttcatgtttctaaacctcctgaaaacacatacatacaacaaatatttcaggtatggattattgcatcaactgaaagaatcttggagtatttcaatttttgttacttctaccacaatcctttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="17057" stop="18123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17357" g_stop="17823" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-M56-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M56-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17357" e_stop="17823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGTCAGTTGGAAGTGATAGCAATGGAAGTGGTGTTGTGGCACTTCTTGAGATAGCTAGGCTGTTTTCTGTTCTGTATTCAAATCCTAAAACAAGGGGTAGATATAACTTACTTTTTGGATTGACGTCTGGTGGGCCTTATAACTTCAACGGAACTCAGAAGGTGCACTACTCCTTCCTGAGCATTTTCTATGCATAAGTTGCAGTATATCTTGCTGTGTCTTTTCAATCTGTAGTTTCTTTCTCTTCAGTGGCTTCGAAGTTTTGACCAACGCCTACGGGAGAGTATCGACTATGCCATTTGCTTGAATAGTCTTGGCTCCTTGGGCAATGAGTTACATCTTCATGTTTCTAAACCTCCTGAAAACACATACATACAACAAATATTTCAGGTATGGATTATTGCATCAACTGAAAGAATCTTGGAGTATTTCAATTTTTGTTACTTCTACCACAATCCTTTCTA</genome_strand>
        <mrna_strand>CATTGTCAGTTGGAAGTGATAGCAATGGAAGTGGTGTTGTGGCACTTCTTGAGATAGCTAGGCTGTTTTCTGTTCTGTATTCAAATCCTAAAACAAGGGGTAGATATAACTTACTTTTTGGATTGACGTCTGGTGGGCCTTATAACTTCAACGGAACTCAGAAGGTGCACTACTCCTTCCTGAGCATTTTCTATGCATAAGTTGCAGTATATCTTGCTGTGTCTTTTCAATCTGTAGTTTCTTTCTCTTCAGTGGCTTCGAAGTTTTGACCAACGCCTACGGGAGAGTATCGACTATGCCATTTGCTTGAATAGTCTTGGCTCCTTGGGCAATGAGTTACATCTTCATGTTTCTAAACCTCCTGAAAACACATACATACAACAAATATTTCAGGTATGGATTATTGCATCAACTGAAAGAATCTTGGAGTATTTCAATTTTTGTTACTTCTACCACAATCCTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M56-F" ref_strand="+" ref_description="SGN-M56-F TG286-F [rflp_markers_forward]">
      <seq>tgactcgcagccttgaaaactgctcatgctcccaggctacctacattattttagtagctttagcacagaaactattacacatggccttctaaggaaataagacaagtcaaaatggcaggagcaactgatattcaactacaaaaccaagctcaataacttagtgctcaatcagtgttaatactattcaatatagctacaaatgagctgggaaaatctcaaccctaccccaacataagatcagatggaaagcttcctccttcacaagagagaatgctaaatagaagtttgaataaacagttcctggggggatagcagccaaggagaagatgtttgaaggagaaaaagaatactcagatgccagaacattgagattgtcactaaatcaccagtttaatataactgactactaaaacccaaaaccagaaaacactctatggttataaccagacagattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="19176" stop="18122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18876" g_stop="18422" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-M56-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M56-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18876" e_stop="18422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTCGCAGCCTTGAAAACTGCTCATGCTCCCAGGCTACCTACATTATTTTAGTAGCTTTAGCACAGAAACTATTACACATGGCCTTCTAAGGAAATAAGACAAGTCAAAATGGCAGGAGCAACTGATATTCAACTACAAAACCAAGCTCAATAACTTAGTGCTCAATCAGTGTTAATACTATTCAATATAGCTACAAATGAGCTGGGAAAATCTCAACCCTACCCCAACATAAGATCAGATGGAAAGCTTCCTCCTTCACAAGAGAGAATGCTAAATAGAAGTTTGAATAAACAGTTCCTGGGGGGATAGCAGCCAAGGAGAAGATGTTTGAAGGAGAAAAAGAATACTCAGATGCCAGAACATTGAGATTGTCACTAAATCACCAGTTTAATATAACTGACTACTAAAACCCAAAACCAGAAAACACTCTATGGTTATAACCAGACAGATTC</genome_strand>
        <mrna_strand>TGACTCGCAGCCTTGAAAACTGCTCATGCTCCCAGGCTACCTACATTATTTTAGTAGCTTTAGCACAGAAACTATTACACATGGCCTTCTAAGGAAATAAGACAAGTCAAAATGGCAGGAGCAACTGATATTCAACTACAAAACCAAGCTCAATAACTTAGTGCTCAATCAGTGTTAATACTATTCAATATAGCTACAAATGAGCTGGGAAAATCTCAACCCTACCCCAACATAAGATCAGATGGAAAGCTTCCTCCTTCACAAGAGAGAATGCTAAATAGAAGTTTGAATAAACAGTTCCTGGGGGGATAGCAGCCAAGGAGAAGATGTTTGAAGGAGAAAAAGAATACTCAGATGCCAGAACATTGAGATTGTCACTAAATCACCAGTTTAATATAACTGACTACTAAAACCCAAAACCAGAAAACACTCTATGGTTATAACCAGACAGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8797" ref_strand="+" ref_description="SGN-M8797 C2_At5g22350 [cosii_markers]">
      <seq>aaaaatcaactcttttttgtattcttttggcctttgcggttatctaaagccatcatcagttgtttgaagtgaaatcgatcttctacaattctagggtttgatattgttttttttcaatttcagtataaatgaagccgatacggttaccggaacctccatcaagtccacgaggaatcggcggtgtgccggatatatttgaaggtggagttcatggtgtgattaggcgagctgttgtcatcggtaatggttttcctgcttcggagaatcaaagtattggtctgattcaagcactcggcctctctgataagcacactctatatcgggttactagaccaagaggaggagtgaatgagtggctacactggcttcctgtatcattacacaaaacggtgtattacatcataagccagatatgtgggattctattgagaagaaggactagaaaactaggaactttgcctatggaaaatggtggcaatgtaggcttgtcatctattttggaagctgacgtgaagagtattgttagaatggctcgcgagacatttgagaaggatggtccattgctggtgattgcatctggaagagatacgatctcaataactagctccattaaaagattggcatctgataatgtttttgttgtccagattcagcatccaaggtcccgtttggacaggttcgacatggtaatcacccccaagcatgactattactctttaactcctcaaggaaaggaacaagttcctcgttttctgcaaaagtggataacaccccaagaaccacctgataagcatgttgtacttacggtaggagctctacatcaagttgattttgctgctcttagagctgcagctgccacctggcatgaagagtttgcacctttgccgaagcccttattggtggtcaacattggaggccctacaagatactgcaggtatggggcagaccttgtaaagcaattaacagcctcccttcacaatgttcttgggagctgtgggagcataagaatctcgttctccagaaggacaccagaaaagcattccaaaatcgtggtcaaagagcttggtttggatccaaaagtacacatttggaatggtgaagagccaaatccacacatggggcatctggcttgggctgatgtttttgttatcacagcagattcagttagcatgttgagtgaggcttgcagtactgggaagcctgtgtatgtagttggagccgaacgctgtacatggaagttcacagagttccacaagacacttagagagagaggactgactaggccattcactggacttgaggatatgtcggaaagctggagttaccctccgcttaatgataccgcagttgcagctagccgtgtgaatgaagctcttgctgagaaaggatggaagattaaagcataaaaaatccttttggtctaatattgttgttgttacaaattttacttctctatttacatttatgatgtgttcagagttcttagtccatgtattatgattgatttaattttacaggaggaaagaaaagaagagatatccagttaaaatcagagttgaacaatgaggctcttattcttttttaactcattgagggggttttccacttatatattgacaaaaataaatgtcaatcttcatatgtaaagtagaagcatttgcttgctcaaccaaagataaaaaaaaattaacaagtttaaatctaattatgctttgttggattttttaaatataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="39263" stop="28887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38963" g_stop="38644" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38643" i_stop="37608" i_length="1036">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37607" g_stop="37378" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="550" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37377" i_stop="35028" i_length="2350">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35027" g_stop="34931" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="647" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34930" i_stop="32681" i_length="2250">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32680" g_stop="32531" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="797" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32530" i_stop="32421" i_length="110">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32420" g_stop="32294" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="798" r_stop="924" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32293" i_stop="31566" i_length="728">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31565" g_stop="31453" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="925" r_stop="1037" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="31452" i_stop="31363" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31362" g_stop="31299" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1038" r_stop="1101" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="31298" i_stop="31211" i_length="88">
            <donor d_prob="0.240" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="31210" g_stop="31117" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1102" r_stop="1195" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="31116" i_stop="31025" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="31024" g_stop="30916" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1196" r_stop="1304" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="30915" i_stop="29620" i_length="1296">
            <donor d_prob="0.735" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="29619" g_stop="29183" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1305" r_stop="1741" r_length="437" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-M8797" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38963" e_stop="38644"/>
          <exon e_start="37607" e_stop="37378"/>
          <exon e_start="35027" e_stop="34931"/>
          <exon e_start="32680" e_stop="32531"/>
          <exon e_start="32420" e_stop="32294"/>
          <exon e_start="31565" e_stop="31453"/>
          <exon e_start="31362" e_stop="31299"/>
          <exon e_start="31210" e_stop="31117"/>
          <exon e_start="31024" e_stop="30916"/>
          <exon e_start="29619" e_stop="29183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCAACTCTTTTTTGTATTCTTTTGGCCTTTGCGGTTATCTAAAGCCATCATCAGTTGTTTGAAGTGAAATCGATCTTCTACAATTCTAGGGTTTGATATTGTTTTTTTTCAATTTCAGTATAAATGAAGCCGATACGGTTACCGGAACCTCCATCAAGTCCACGAGGAATCGGCGGTGTGCCGGATATATTTGAAGGTGGAGTTCATGGTGTGATTAGGCGAGCTGTTGTCATCGGTAATGGTTTTCCTGCTTCGGAGAATCAAAGTATTGGTCTGATTCAAGCACTCGGCCTCTCTGATAAGCACACTCTATATGTAAGCTCCTTTTCCTCAGTATTCGTCCAGTAATCTAATTACCTTCTATTGTCTTCAATGCGGAGATTTGATTAGTATTGAAATTAGTTGGCAGAAAGTTGTGATAGTTATTCTAGAGGTTGAATTATTTTGTTTACAATGAGGACAGATAAAATTGCAGGAAACTCAAACTTAATAGGATTATGTTTGTCATATAGATATTGATCTGCGTGGTGTATCCGAGTGATTTCTCCATGCATCTTACATGGACCTAGTGAAATTGATTTAGGAGAATTAGACTTGGAGTTGATGGAGTATTGTGTTATATGTGTGCTGATTTCTGGTAATTGATTTAAATATGTCTGTATCGTGCCGCTTTGTGTTGAAAATGATAGTGGAACCAAAACTTATGAAAATTTTGGGTAGCGCCAAATGTTTTTAGTAGCTTGTGGTTGTGAAGGTATTTTTGTAGGGGATCATTCAGAATTTATAGGTTAATAAAGTCAAACATGACAAGATAGTGGGCATGGAATTGAAATATTGTGTCTCGAGATTTTGGGTGGTGGGATTGCACTGATGACGGTTAATAGTTTCTTAACTGGTAAAGGGTTGAAAACTGTTTACTGCTTTTCCTATAGATTTTGATTGCACAACATTGGGGCTTAGTGTCTTATTACCTTTTGCTTTCTTGCTTCAAATTGAGCAAACAGGATGATAGACCTCTTCACTTTTAATTCCGTTTTTCGCTAACCCTGATTTATGTCTTGGTTGCCTGGCTATTTTGTTGATCCTCTCACAATGTATAGAAACCCGTTCACTTGTTCAAAAGTTTGCGTGAGTAGAGTGAATGAAACAATTGAAGGTTCTACTAATCTGGTTGATATTAGAATTTTCATGTCTTCCTTGATTTGAACGGTGTTATTTTAAAGTATGAAGTAATACAGAGAGGTAAGTAGGGGCTGAAAACTCGAAAGTCCTGTATTTATTTTGGGATAAGGTAATTGTTGATACATCTTTTTTAAAAAGAAATTGCTATTGATGCTTTCTATACATGCAGCGGGTTACTAGACCAAGAGGAGGAGTGAATGAGTGGCTACACTGGCTTCCTGTATCATTACACAAAACGGTGTATTACATCATAAGCCAGATATGTGGGATTCTATTGAGAAGAAGGACTAGAAAACTAGGAACTTTGCCTATGGAAAATGGTGGCAATGTAGGCTTGTCATCTATTTTGGAAGCTGACGTGAAGAGTATTGTTAGAATGGCTCGCGAGACATTTGAGAAGTAAGTTTCCACACAATTCCTAACATCATCTTCATTCATGTGATTCGTTTGGTTGCTGTTGCATTTTATGATAATTGTTTAATCATGGTAGTAATTTTTGAAGTATGTGGTCATTTCATTTTTTTTTTATGAGAAGGGAAACCCACAGCCGCTACCCTTTGGGTGCGCACAGGGTAAAACCTCCACTCGTATGCAATAGCTTGCAAACCAGATAGGAGAGGTAACCTGCACTAGTCAAGACTTGTGCAATGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATAGAAGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGGGTTGTGGTCATTTCATCTTAAAAGTTAAGCTCTTAAAACTTAAGCTTAGAGAATGCACACTTTTCTTACTTAATTATGTCTTTGACACTCCCCCTTACGTGTGCTTAGTTTTTTTCATGGACCTAATGCGTGAAAATTCTTTTTGATAATGAGTGGCTGAGAGACATAAACTTATAAACTTTGTTTGCTATGATACTATGAAAAAAAATAAAAACTTGTCATAGACTTAATTAACATGGTATAAGGGGTGCTCCTTAATCCTTATAATGGAGTCTTAGATTATGTATTATGTATAATATGGTAGGTAATTGTTAATCACTATGCTGATAAGGTAAATAAACATTCTTTAATCAAATATGAAATATTTTAACATATTTAATATAATATTAGGTATAATTTTTCTTGTTCAAGTAATGATAAATCTAGACATGGATGAATTTAGACCCATATTCACTTGACATTCTAACATACTCCCTTAATTTCAAAGTGGACCAACCTACTTCAGAGTGCTTAATTCACCAAAAAGTTGACGTTTGCGGGAATAGTGCAGAGAAAAGAAAAGAAAGAAAAGAAAAGTGGCGTCAGAATTTATTTCGTCAAGAAGTCGTTCGTAACTCTATTTTCAACCACCAAGCAGAGATAGTGTTATAGATCCCGTAAATATTATCAATTTTACTTAATTAGCATAACAACAAGAATTTAGGGTTTAAGGGAGTAACAGGTCTGTCGTGCAAACCGGATCTTGAAAAGGCATGCGATCATGTGAATTGGAAATCCCAAGATTCCGTTACGCTTCAATAGGAATTTTGGGAGAAGTGGAGAAAATGGATCTATTTTTGTTCTTCTTCAGTGAGATTTTCTGTGTTGTTTAATGGTAACCAGTAAAGTGAAGTTTTTTGGATTTTCAACGGGTTTGAGACAGGGAGATCCTTTAGCTTCGATGTTATTTATTTTAGTCATGGAAGCTTTGAGCAGGATGATGCATAATGTTGTCTTTTTGTGTCTGTATGTGGGAGAGGATGTTATAGTTGATAAATATGGGATTACTGAAGGGGGTTGGAAAACTAGACATGTAGAACCTTTTGGTTATGGGGCGTGGACGAATGTCTTGAAGGAATGGGACTATTTTGTGGAAAATATCTCATTTTAGTTGGTAGTCGGGAGGAGAGTATACTTTTGGGAGTGACCTTTTGGTATTTGAGATTTAGAAGGGGTTTCCAAGATTGATAAGTGAGTGAGTTTCAAAGATTGATTGACTTACTTCATAGGAAAATTAGTCTGGTGGATAATCTCAATGTTTTGGTGGTGGGGCTTGGGAAACAATGGACTGTTTGGGTGATGTCTTTTTATGACAAACTTTTGGTCAGGGAGAAGATTGATTTCCTATGTAAATTAATATGCTCTCCAACTATGTCAAGGAAGATGTGCTATTTCACTTGGCCAACCTCTAGAGGGGTGATTTTGACAGCAAAAAAGTCTTGGAAAATGGAAGGCTGTCTGCGTCAGTTGATGTAACAAGTTAAGGAGGCAGACTAGGACATGGACGTTCTTCTTTTAAATTGCAGGATTATCATGAGACTATGGCTGAGATGTGAGTAGCATGCACTGAAGATAAATTGAGATAATATCATTTGAAATTGTTTGGTCATGTCCTGCATCAACATCGACCTTCAGATGCACCGATCAATAGGTTTGGAACCATGGTGAGGAAAAGTTTGAAAATGATATGAGGTAGACCTAAAATCACATAGGGAAATTACCTTTGTAGACCTACAATTTCTTGAAATCAATTCAGCTTAGCTAAATATAGGGCACAATAGAAGAAAAAGATACAATTATGAGTCTAACACATCTGAAATAACCACATGATCATCTCTATAACCTTTCTCAATTCTCATACATGACCTTCAATTTTGTAATGGTAGAACTAGTCTTTGTGCTCTTGATAAAAAACTCAGTGAAGTAAAGGTAGCTAATGATTGTTCATTCTCAGGGATGGTCCATTGCTGGTGATTGCATCTGGAAGAGATACGATCTCAATAACTAGCTCCATTAAAAGATTGGCATCTGATAATGTTTTTGTTGTCCAGGTATGAAATCTGATTCTTCTGTGGGGAACATGTTTTTTCTGCAGATTGCTATAGTGGAAAGTTCATTTAACCACTTCCTTACTTCTTTATAATCACCTCCTCCTGTTTATATATTTTTTTAAATGACTTTCCTGCATCAGTGATGAAATAATTGGATGATTTATTCCTTGTGGAGATTAAAAGAAGAGAGGAACTGGTGTAACGGTTCTGTTTTTTGACAAAGTTAACAAGTTTTTTTTACAAACATTTCTAGGAAGAAGCTATCTGTTGTAACAAACTGATGGCCTCGAGGAAAGGAATCCCTTGGATCCACAGGGGCTGAGGAATTATTAGTATTCTTCAAATTGGGTTGGTTAAATCATGCGTACAGAAAGGCGAAAGCTTCCTAATTACAAGCCTAACCATGATGAACTTAAATTTCTATCAAATTAGTTCTATATTATCTTGAAGGTCTGCAGTATAACTCTGAACGCTTAAAAGACAAGGTTCCAAGAAGCACGATTCATAACACAATTGAAACCAATGATCTATTTCTTGGTAATTGCCATCTTATTTCTTCTCGTGGTAGATTTTTTAATGTCTTCTGACATCCTTTTTTTTTTCCAATACAATAGAAGTTGTGCATTGTGGACCCTTCTTCTCTATGGTTGTTTAACTCTTGCTGTTGGACAGCTTTGTTTGTAGATGAACTTTCATCTACTGGAGGTATAGGAACCTAGAAACTAAGAACTAAGAACTAAGAAAATGAGAGAAGAGTTAGATGCTTCATGCTTTACAACAGTTTCCATTTCTTTAGATATACTTGTATGTCTGGTTATCAAAAAAACTTATATGAGAAAGATGCGATTTACTCTTGCAGTTCATTTTATTTGATAAGTTAGTCTTGTAGTTTTTTTCTGGTTACCTATTAGAGACTAAATGCTTGAGAAGCTAAAGGCATGTTGAATTTTTTTGTATAACTTCCTTTTTTCTTCTTCAGACAGATACTTTAAGCTATCTATATTTGGATACACAAGTCTACATGTCAATGAACAATGTATCTTTTTTTTTTGGCCCACTCTGTCAATCAGCTGTTGCCATGAATTAGTACAATAGATGTTCTCCTGCTAAAGATAACTGCTAGTTGATATGAGCTACAGTGGAACCAAAATATTGAAGAAATTAGGCTGCAAGTCTAGTGAAATTCCTTGTAGTGAATGTGCAAATCTGTTGTGTTTCTAAAAGCAACAAGGTCTATGAGGCTTGAAGCAAAAAGCAAGAAGTGAGCACAAAAGTCAATAACATTAAAAAATATCAAATACATATGAATTTAGTACTTTAATAATCAATTACAACTATGCACCTAAGGGTATAACCTAGTGGTCGATGAAGTGGGTTGAGAATTTTGAGATCTCAAGTTCAAATTCATGCAGAGTCAAAAAGACTAGGTGATTTCTTCCATCTGTCCGAGCCTTTGACAGAGTTACCTGATACCTGTGTTAGTGAGAGGTAGCAGGTACCTTGTGAAATTAGTCGAGGTACGAGCAGACGGCCCAAACACCATGATATAAAAATGTTGATATTAATCCAACTCATCAATTGAGATTCAACGAATTGAATGCTTCTCTTGTTGGATCACTTTGTGCATCACTATTTGAAGTACACACTTATGTGAAATCCATGACTTCACCCATGAAGCGATAATCCCTTGCTTCGCACAGTGATGGCTTTCAGTAACACGCACAAGTCACATTATTTGGCAATTGTTATTGTTCCTTGTTTTCTGAGTGCTTTGTAATGCTTTCCGTATTTATTTGGCATGTCCTCTTTACTTCTGTACCTTTCTTTTTCATACTGCTTTGATGTGCGTTACTTGAGCAGAGGGTCTCTTGGAAACACCCTCTCTACCTCCACGAGGTAGGGATAAGGTCCGGGTACATTCTACCCTCCCCAGGCTCCACCTATTGAATTACACTGTGTATGCTGTTGTTTGTGTACACAAGTTGCTCTGACTAGAGACTTCTTAAACTTTTGTGATAATTTTTTTTTCTTGAACAGCTGGTTGACTAATGAAGTATTCCTAAATTTTTTGGACTGTTAATTGTAGCTGCTGATTTTCCTGTTTAGTTCAGCAAAGAAAGCTGTTATTGCATATTTGGATTGTATGCCGTGTATTTTTTTATTTTTTTATTTTTTTTGTAAATTCTTGAATATTGTTGGGTCTGGAGAAGAAAATCTTATTGATTTGTCTATGCTGTATTTTAACTTCAGATTCAGCATCCAAGGTCCCGTTTGGACAGGTTCGACATGGTAATCACCCCCAAGCATGACTATTACTCTTTAACTCCTCAAGGAAAGGAACAAGTTCCTCGTTTTCTGCAAAAGTGGATAACACCCCAAGAACCACCTGATAAGCATGTTGTAGGTATCCTCAACATTTATATTTAGTTTTAGCATGTAATGTAATATATTTCTGTGTTGAGAGCTTTTGTACCTACATTGCTGAACTATGAATTTTGTTTTCTGGAAAGGTACTTACGGTAGGAGCTCTACATCAAGTTGATTTTGCTGCTCTTAGAGCTGCAGCTGCCACCTGGCATGAAGAGTTTGCACCTTTGCCGAAGCCCTTATTGGTGGTCAACATTGGAGGCCCTACAAGTACGATATTTCTTAAATTCAATGACTTATATCCTTTATTGCAAAATTGAACTCCACAACTTCATTTTGTTGAAGAAAGGAAAGTATGAATAGACAAGGCTGAAGTAACATTAGATATAAATTGGAATAAGCTTTGTATGAAAAAGACTAGGCTGAAATAACATGAGATATGAATTGGAATAAACATCGTATGAAAAGACGAGGCTGAAATAACATGAGATATGTATTGGAATAAAATTCTTATCCCATGTAAAGCAGACAGGTCTGTTTGTGTAGATTTATTGGTTGCTTTCAAAATTTTGTTTTTTTATGTTGTTGCCGCTCAACATCTTCTTGAGTGGACTATACTTTATCTTCATAACTGGGTTTCATATTGCTTGGTTCATAGTTTGAGGATACCTGTAACCCAATTTATTCTGTTCCAATCAGTCTTAAATGAGTATCATTCCTTCTCGACAGCTAGTATCTACATAGTTTAATCATCTTTGTTGCATGGTTTACACGTTATTTGGAGACTTCCAAGAAGGTAGTATATTTGAATCTTGCTTTTCTCTATCTTCAGTTTTTAAGTGGTCTCGGAAAACCTAGACATGTATGAGAATTCATGAAATTTTATCAGGACTGTAGAGTATGACTATTTTTTTCTTTATCTATCCCTTTGCTGTAGCTTCTCCGTTGCCGCTAGGCTCATGTGTATAAATCTTATATCGTTCCTGGATTATGATTAGGATACTGCAGGTATGGGGCAGACCTTGTAAAGCAATTAACAGCCTCCCTTCACAATGTTCTTGGGAGCTGTGGGAGCATAAGAATCTCGTTCTCCAGAAGGACACCAGAAAAGGTATTTTTTTTACAGATTGTGTTTTAAATTATACCAATTGGTAACATCTTTAATGTGTTTGACACACTGTGCAATGCTCATTTCTTGTAGCATTCCAAAATCGTGGTCAAAGAGCTTGGTTTGGATCCAAAAGTACACATTTGGAATGGTGAAGGTGACTCAGATACTATAATCTGTAATGGTTGTGTAGTTATAGTTTTATTTGGATGGTCATCTAACGGATACTTTTTTTTAATATTCAGAGCCAAATCCACACATGGGGCATCTGGCTTGGGCTGATGTTTTTGTTATCACAGCAGATTCAGTTAGCATGTTGAGTGAGGCTTGCAGTACTGGGTATGTCTCACTATTTGCTCAGCAGTTAATGATCTAGTATTTTTAACATGATTTTCCTAAAATTTCGTTATGATTCATATCTTCCTTCCCAGGAAGCCTGTGTATGTAGTTGGAGCCGAACGCTGTACATGGAAGTTCACAGAGTTCCACAAGACACTTAGAGAGAGAGGACTGACTAGGCCATTCACTGGACTTGAGGATGTAAGGATCCCTTCTCCTTTCTCCTTTATGGATAAAATAGGGGAACTTTTAACTTGAGAAATACATTCGGTGCAAACTAAACTGATGATTCTTGTTCAGAGTAGTTGATAGTTGTGATGATATTCTGCCTTGAGAAAAGGAAGATTGTTCTTCTATACAAGTATGCCTAGACAATGCTAGGTGCTTGTGTGTCCAAACTTGTCTTTCTTGTCACTACAAGCATTTGGCTTTGACGGGATGGTGGTTAATTTAGAACATGGTTGGCGTGTTTATTCTTTTGTGTTTACGTGGTATTGTTCTCATGCGTTAAATAGCGATGAGTCACCTAAGAAGTGTGTTCATAGAATGAGCTTTACAGGAAGGCATCTGGATTGCTCATGCTGAAAATATTCTGAGAGTTACTTAGATTATTTGCTTGTGGAAGCAGCATATATGATTTATGGGCAATTACTTAGATTTACATTTTGTGCTACAACCTTATCTGATAGAAAAGAATCTTAAAGCTTGAAACCAATCTTACCTGGGATTGCAAATCCAAAGTTTGTCAGTGGATCCAGCTGTAACAGTGCCTATAATTGATTTCTTCTATGCAATACTAGTCGATACTGTTAGCATGATTGGACAGATTCTAACTATCTGTACATATATATGTGATAAACTCTAAATATTTGTGTAGTGATGATAGGAGATAGCATAGATTAATGTAGCATATTTTCAGAAATATTACAATTAGGAATATATATAGCAGAACTTTAGGCATGTAAATCAGAATTCTCTCTATTTAATGGAAGAACTTCATTTGACAGAACTCATTCAGCAACATTGACTAGTCAGTGCTTTGATTCTTAGTTTCTTTCATCTGTGATTTCTTCAGAATTGATCAAATCATCAAATTACGTTGATAGGTCCACATATTATGCGTAGTGTTAAGGCATGTATACGCCTCTATTTTTTCTCATGAAATCTTTAGAATTTCACTGCTTAGCTTTCAATCCGCCTCGTGAAAAATTGGAAAAAATGGTTCATTTTCCCATATAGAAGTATATTTGCTTGAGTGAATATGTCTAAGATGTATTGCTTTACCCATAAAGAAGTAATTTTTTGAGATTGCCTTGATTATCGAGTTGAGAGGAAGTTCTCACATCTGGAAGACTACTTGACAACAGCAATAACTACGCCTCACTCCCAAATCCCAATCAAGTTGGAGTCGGCTATTTGAATTCCTTTTCTGTTCTGTTAATACACTTAACATATTTCCATCTTCTTTTTTCTTAAATCTCCCCTTTGACAACGCAGATGTCGGAAAGCTGGAGTTACCCTCCGCTTAATGATACCGCAGTTGCAGCTAGCCGTGTGAATGAAGCTCTTGCTGAGAAAGGATGGAAGATTAAAGCATAAAAAATCCTTTTGGTCTAATATTGTTGTTGTTACAAATTTTACTTCTCTATTTACATTTATGATGTGTTCAGAGTTCTTAGTCCATGTATTATGATTGATTTAATTTTACAGGAGGAAAGAAAAGAAGAGATATCCAGTTAAAATCAGAGTTGAACAATGAGGCTCTTATTCTTTTTTAACTCATTGAGGGGGTTTTCCACTTATATATTGACAAAAATAAATGTCAATCTTCATATGTAAAGTAGAAGCATTTGCTTGCTCAACCAAAGATAAAAAAAAATTAACAAGTTTAAATCTAATTATGCTTTGTTGGATTTTTTAAATATATATATTAT</genome_strand>
        <mrna_strand>AAAAATCAACTCTTTTTTGTATTCTTTTGGCCTTTGCGGTTATCTAAAGCCATCATCAGTTGTTTGAAGTGAAATCGATCTTCTACAATTCTAGGGTTTGATATTGTTTTTTTTCAATTTCAGTATAAATGAAGCCGATACGGTTACCGGAACCTCCATCAAGTCCACGAGGAATCGGCGGTGTGCCGGATATATTTGAAGGTGGAGTTCATGGTGTGATTAGGCGAGCTGTTGTCATCGGTAATGGTTTTCCTGCTTCGGAGAATCAAAGTATTGGTCTGATTCAAGCACTCGGCCTCTCTGATAAGCACACTCTATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTTACTAGACCAAGAGGAGGAGTGAATGAGTGGCTACACTGGCTTCCTGTATCATTACACAAAACGGTGTATTACATCATAAGCCAGATATGTGGGATTCTATTGAGAAGAAGGACTAGAAAACTAGGAACTTTGCCTATGGAAAATGGTGGCAATGTAGGCTTGTCATCTATTTTGGAAGCTGACGTGAAGAGTATTGTTAGAATGGCTCGCGAGACATTTGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGTCCATTGCTGGTGATTGCATCTGGAAGAGATACGATCTCAATAACTAGCTCCATTAAAAGATTGGCATCTGATAATGTTTTTGTTGTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAGCATCCAAGGTCCCGTTTGGACAGGTTCGACATGGTAATCACCCCCAAGCATGACTATTACTCTTTAACTCCTCAAGGAAAGGAACAAGTTCCTCGTTTTCTGCAAAAGTGGATAACACCCCAAGAACCACCTGATAAGCATGTT..............................................................................................................GTACTTACGGTAGGAGCTCTACATCAAGTTGATTTTGCTGCTCTTAGAGCTGCAGCTGCCACCTGGCATGAAGAGTTTGCACCTTTGCCGAAGCCCTTATTGGTGGTCAACATTGGAGGCCCTACAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACTGCAGGTATGGGGCAGACCTTGTAAAGCAATTAACAGCCTCCCTTCACAATGTTCTTGGGAGCTGTGGGAGCATAAGAATCTCGTTCTCCAGAAGGACACCAGAAAAG..........................................................................................CATTCCAAAATCGTGGTCAAAGAGCTTGGTTTGGATCCAAAAGTACACATTTGGAATGGTGAAG........................................................................................AGCCAAATCCACACATGGGGCATCTGGCTTGGGCTGATGTTTTTGTTATCACAGCAGATTCAGTTAGCATGTTGAGTGAGGCTTGCAGTACTGG............................................................................................GAAGCCTGTGTATGTAGTTGGAGCCGAACGCTGTACATGGAAGTTCACAGAGTTCCACAAGACACTTAGAGAGAGAGGACTGACTAGGCCATTCACTGGACTTGAGGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCGGAAAGCTGGAGTTACCCTCCGCTTAATGATACCGCAGTTGCAGCTAGCCGTGTGAATGAAGCTCTTGCTGAGAAAGGATGGAAGATTAAAGCATAAAAAATCCTTTTGGTCTAATATTGTTGTTGTTACAAATTTTACTTCTCTATTTACATTTATGATGTGTTCAGAGTTCTTAGTCCATGTATTATGATTGATTTAATTTTACAGGAGGAAAGAAAAGAAGAGATATCCAGTTAAAATCAGAGTTGAACAATGAGGCTCTTATTCTTTTTTAACTCATTGAGGGGGTTTTCCACTTATATATTGACAAAAATAAATGTCAATCTTCATATGTAAAGTAGAAGCATTTGCTTGCTCAACCAAAGATAAAAAAAAATTAACAAGTTTAAATCTAATTATGCTTTGTTGGATTTTTTAAATATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8797-2" ref_strand="+" ref_description="SGN-M8797-2 C2_At5g22350-2 [cosii_markers]">
      <seq>aaaaaccttgttgtcctccccacgaaatcatcaaatagaaagaagaaaaatcaacttttttttttggcctttgcggttatctaaagccatcatcagtcatcaacaggttatttgaagtgaaatcgatcttctacatttctagggtttgataacttttttttttcaatttcggtataaatgaagccgatacggttaccggaacctccagcaagtccacgaggaatgggcggtgtgccggatatatttgaaggtgtagttcatggtgcgattaggcgagctgttgtcatcggtaatggttttcctgcttcggagaatcaaagtattggtttgattcaagcactcggcctctccgataagcacactctatatcgggttactagaccaagaggaggagtcaatgagtggctacactggcttcctgtatcattacacaaaaagttgtattacatcataagccagatatgtgggattctattcagaagaagggctagacaactaggaactttgcctatggaaaatggtggcaatgtaggcttgtcatctattttggaagctgacgtgaagagtatagttagaatggctcgcgagacatttgagaaggatggtccattgctggtgattgcatctggaagagatacgatctcaattactagctccattaaaagattggcatctgataatgtttttgttgtccagattcagcatccaaggtcccgtttggacaggttcgacttggtaatcacccccaagcatgactattactctttaactcctcaaggaaaggaacaagttcctcgttttctgcacaaatggataacaccccatgaaccacctgataaacatgttgtacttacggtaggagctctacatcaagttgattttgctgcgcttagagctgcagccgccacctggcatgaagagtttgcacctttgccgaagcccttattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="39311" stop="32018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39011" g_stop="38644" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.883"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38643" i_stop="37608" i_length="1036">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37607" g_stop="37378" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="599" r_length="230" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37377" i_stop="35028" i_length="2350">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35027" g_stop="34931" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="696" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34930" i_stop="32681" i_length="2250">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32680" g_stop="32531" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="846" r_length="150" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32530" i_stop="32421" i_length="110">
            <donor d_prob="0.934" d_score="0.92"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32420" g_stop="32318" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="847" r_stop="949" r_length="103" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-M8797-2" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>948</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8797-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39011" e_stop="38644"/>
          <exon e_start="37607" e_stop="37378"/>
          <exon e_start="35027" e_stop="34931"/>
          <exon e_start="32680" e_stop="32531"/>
          <exon e_start="32420" e_stop="32318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCTTGCTGTCCTTCCCACGAAATCATCAAATAGAAAGAAGAAGAAAAATCAACTCTTTTTTGTATTCTTT-TGG-CCTTTGCGGTTATCTAAAGCCATCATCA-GTTGTTTGAAGTGAAATCGATCTTCTACAATTCTAGGGTTTGAT-ATTGTTTTTTTTCAATTTCAGTATAAATGAAGCCGATACGGTTACCGGAACCTCCATCAAGTCCACGAGGAATCGGCGGTGTGCCGGATATATTTGAAGGTGGAGTTCATGGTGTGATTAGGCGAGCTGTTGTCATCGGTAATGGTTTTCCTGCTTCGGAGAATCAAAGTATTGGTCTGATTCAAGCACTCGGCCTCTCTGATAAGCACACTCTATATGTAAGCTCCTTTTCCTCAGTATTCGTCCAGTAATCTAATTACCTTCTATTGTCTTCAATGCGGAGATTTGATTAGTATTGAAATTAGTTGGCAGAAAGTTGTGATAGTTATTCTAGAGGTTGAATTATTTTGTTTACAATGAGGACAGATAAAATTGCAGGAAACTCAAACTTAATAGGATTATGTTTGTCATATAGATATTGATCTGCGTGGTGTATCCGAGTGATTTCTCCATGCATCTTACATGGACCTAGTGAAATTGATTTAGGAGAATTAGACTTGGAGTTGATGGAGTATTGTGTTATATGTGTGCTGATTTCTGGTAATTGATTTAAATATGTCTGTATCGTGCCGCTTTGTGTTGAAAATGATAGTGGAACCAAAACTTATGAAAATTTTGGGTAGCGCCAAATGTTTTTAGTAGCTTGTGGTTGTGAAGGTATTTTTGTAGGGGATCATTCAGAATTTATAGGTTAATAAAGTCAAACATGACAAGATAGTGGGCATGGAATTGAAATATTGTGTCTCGAGATTTTGGGTGGTGGGATTGCACTGATGACGGTTAATAGTTTCTTAACTGGTAAAGGGTTGAAAACTGTTTACTGCTTTTCCTATAGATTTTGATTGCACAACATTGGGGCTTAGTGTCTTATTACCTTTTGCTTTCTTGCTTCAAATTGAGCAAACAGGATGATAGACCTCTTCACTTTTAATTCCGTTTTTCGCTAACCCTGATTTATGTCTTGGTTGCCTGGCTATTTTGTTGATCCTCTCACAATGTATAGAAACCCGTTCACTTGTTCAAAAGTTTGCGTGAGTAGAGTGAATGAAACAATTGAAGGTTCTACTAATCTGGTTGATATTAGAATTTTCATGTCTTCCTTGATTTGAACGGTGTTATTTTAAAGTATGAAGTAATACAGAGAGGTAAGTAGGGGCTGAAAACTCGAAAGTCCTGTATTTATTTTGGGATAAGGTAATTGTTGATACATCTTTTTTAAAAAGAAATTGCTATTGATGCTTTCTATACATGCAGCGGGTTACTAGACCAAGAGGAGGAGTGAATGAGTGGCTACACTGGCTTCCTGTATCATTACACAAAACGGTGTATTACATCATAAGCCAGATATGTGGGATTCTATTGAGAAGAAGGACTAGAAAACTAGGAACTTTGCCTATGGAAAATGGTGGCAATGTAGGCTTGTCATCTATTTTGGAAGCTGACGTGAAGAGTATTGTTAGAATGGCTCGCGAGACATTTGAGAAGTAAGTTTCCACACAATTCCTAACATCATCTTCATTCATGTGATTCGTTTGGTTGCTGTTGCATTTTATGATAATTGTTTAATCATGGTAGTAATTTTTGAAGTATGTGGTCATTTCATTTTTTTTTTATGAGAAGGGAAACCCACAGCCGCTACCCTTTGGGTGCGCACAGGGTAAAACCTCCACTCGTATGCAATAGCTTGCAAACCAGATAGGAGAGGTAACCTGCACTAGTCAAGACTTGTGCAATGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATAGAAGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGGGTTGTGGTCATTTCATCTTAAAAGTTAAGCTCTTAAAACTTAAGCTTAGAGAATGCACACTTTTCTTACTTAATTATGTCTTTGACACTCCCCCTTACGTGTGCTTAGTTTTTTTCATGGACCTAATGCGTGAAAATTCTTTTTGATAATGAGTGGCTGAGAGACATAAACTTATAAACTTTGTTTGCTATGATACTATGAAAAAAAATAAAAACTTGTCATAGACTTAATTAACATGGTATAAGGGGTGCTCCTTAATCCTTATAATGGAGTCTTAGATTATGTATTATGTATAATATGGTAGGTAATTGTTAATCACTATGCTGATAAGGTAAATAAACATTCTTTAATCAAATATGAAATATTTTAACATATTTAATATAATATTAGGTATAATTTTTCTTGTTCAAGTAATGATAAATCTAGACATGGATGAATTTAGACCCATATTCACTTGACATTCTAACATACTCCCTTAATTTCAAAGTGGACCAACCTACTTCAGAGTGCTTAATTCACCAAAAAGTTGACGTTTGCGGGAATAGTGCAGAGAAAAGAAAAGAAAGAAAAGAAAAGTGGCGTCAGAATTTATTTCGTCAAGAAGTCGTTCGTAACTCTATTTTCAACCACCAAGCAGAGATAGTGTTATAGATCCCGTAAATATTATCAATTTTACTTAATTAGCATAACAACAAGAATTTAGGGTTTAAGGGAGTAACAGGTCTGTCGTGCAAACCGGATCTTGAAAAGGCATGCGATCATGTGAATTGGAAATCCCAAGATTCCGTTACGCTTCAATAGGAATTTTGGGAGAAGTGGAGAAAATGGATCTATTTTTGTTCTTCTTCAGTGAGATTTTCTGTGTTGTTTAATGGTAACCAGTAAAGTGAAGTTTTTTGGATTTTCAACGGGTTTGAGACAGGGAGATCCTTTAGCTTCGATGTTATTTATTTTAGTCATGGAAGCTTTGAGCAGGATGATGCATAATGTTGTCTTTTTGTGTCTGTATGTGGGAGAGGATGTTATAGTTGATAAATATGGGATTACTGAAGGGGGTTGGAAAACTAGACATGTAGAACCTTTTGGTTATGGGGCGTGGACGAATGTCTTGAAGGAATGGGACTATTTTGTGGAAAATATCTCATTTTAGTTGGTAGTCGGGAGGAGAGTATACTTTTGGGAGTGACCTTTTGGTATTTGAGATTTAGAAGGGGTTTCCAAGATTGATAAGTGAGTGAGTTTCAAAGATTGATTGACTTACTTCATAGGAAAATTAGTCTGGTGGATAATCTCAATGTTTTGGTGGTGGGGCTTGGGAAACAATGGACTGTTTGGGTGATGTCTTTTTATGACAAACTTTTGGTCAGGGAGAAGATTGATTTCCTATGTAAATTAATATGCTCTCCAACTATGTCAAGGAAGATGTGCTATTTCACTTGGCCAACCTCTAGAGGGGTGATTTTGACAGCAAAAAAGTCTTGGAAAATGGAAGGCTGTCTGCGTCAGTTGATGTAACAAGTTAAGGAGGCAGACTAGGACATGGACGTTCTTCTTTTAAATTGCAGGATTATCATGAGACTATGGCTGAGATGTGAGTAGCATGCACTGAAGATAAATTGAGATAATATCATTTGAAATTGTTTGGTCATGTCCTGCATCAACATCGACCTTCAGATGCACCGATCAATAGGTTTGGAACCATGGTGAGGAAAAGTTTGAAAATGATATGAGGTAGACCTAAAATCACATAGGGAAATTACCTTTGTAGACCTACAATTTCTTGAAATCAATTCAGCTTAGCTAAATATAGGGCACAATAGAAGAAAAAGATACAATTATGAGTCTAACACATCTGAAATAACCACATGATCATCTCTATAACCTTTCTCAATTCTCATACATGACCTTCAATTTTGTAATGGTAGAACTAGTCTTTGTGCTCTTGATAAAAAACTCAGTGAAGTAAAGGTAGCTAATGATTGTTCATTCTCAGGGATGGTCCATTGCTGGTGATTGCATCTGGAAGAGATACGATCTCAATAACTAGCTCCATTAAAAGATTGGCATCTGATAATGTTTTTGTTGTCCAGGTATGAAATCTGATTCTTCTGTGGGGAACATGTTTTTTCTGCAGATTGCTATAGTGGAAAGTTCATTTAACCACTTCCTTACTTCTTTATAATCACCTCCTCCTGTTTATATATTTTTTTAAATGACTTTCCTGCATCAGTGATGAAATAATTGGATGATTTATTCCTTGTGGAGATTAAAAGAAGAGAGGAACTGGTGTAACGGTTCTGTTTTTTGACAAAGTTAACAAGTTTTTTTTACAAACATTTCTAGGAAGAAGCTATCTGTTGTAACAAACTGATGGCCTCGAGGAAAGGAATCCCTTGGATCCACAGGGGCTGAGGAATTATTAGTATTCTTCAAATTGGGTTGGTTAAATCATGCGTACAGAAAGGCGAAAGCTTCCTAATTACAAGCCTAACCATGATGAACTTAAATTTCTATCAAATTAGTTCTATATTATCTTGAAGGTCTGCAGTATAACTCTGAACGCTTAAAAGACAAGGTTCCAAGAAGCACGATTCATAACACAATTGAAACCAATGATCTATTTCTTGGTAATTGCCATCTTATTTCTTCTCGTGGTAGATTTTTTAATGTCTTCTGACATCCTTTTTTTTTTCCAATACAATAGAAGTTGTGCATTGTGGACCCTTCTTCTCTATGGTTGTTTAACTCTTGCTGTTGGACAGCTTTGTTTGTAGATGAACTTTCATCTACTGGAGGTATAGGAACCTAGAAACTAAGAACTAAGAACTAAGAAAATGAGAGAAGAGTTAGATGCTTCATGCTTTACAACAGTTTCCATTTCTTTAGATATACTTGTATGTCTGGTTATCAAAAAAACTTATATGAGAAAGATGCGATTTACTCTTGCAGTTCATTTTATTTGATAAGTTAGTCTTGTAGTTTTTTTCTGGTTACCTATTAGAGACTAAATGCTTGAGAAGCTAAAGGCATGTTGAATTTTTTTGTATAACTTCCTTTTTTCTTCTTCAGACAGATACTTTAAGCTATCTATATTTGGATACACAAGTCTACATGTCAATGAACAATGTATCTTTTTTTTTTGGCCCACTCTGTCAATCAGCTGTTGCCATGAATTAGTACAATAGATGTTCTCCTGCTAAAGATAACTGCTAGTTGATATGAGCTACAGTGGAACCAAAATATTGAAGAAATTAGGCTGCAAGTCTAGTGAAATTCCTTGTAGTGAATGTGCAAATCTGTTGTGTTTCTAAAAGCAACAAGGTCTATGAGGCTTGAAGCAAAAAGCAAGAAGTGAGCACAAAAGTCAATAACATTAAAAAATATCAAATACATATGAATTTAGTACTTTAATAATCAATTACAACTATGCACCTAAGGGTATAACCTAGTGGTCGATGAAGTGGGTTGAGAATTTTGAGATCTCAAGTTCAAATTCATGCAGAGTCAAAAAGACTAGGTGATTTCTTCCATCTGTCCGAGCCTTTGACAGAGTTACCTGATACCTGTGTTAGTGAGAGGTAGCAGGTACCTTGTGAAATTAGTCGAGGTACGAGCAGACGGCCCAAACACCATGATATAAAAATGTTGATATTAATCCAACTCATCAATTGAGATTCAACGAATTGAATGCTTCTCTTGTTGGATCACTTTGTGCATCACTATTTGAAGTACACACTTATGTGAAATCCATGACTTCACCCATGAAGCGATAATCCCTTGCTTCGCACAGTGATGGCTTTCAGTAACACGCACAAGTCACATTATTTGGCAATTGTTATTGTTCCTTGTTTTCTGAGTGCTTTGTAATGCTTTCCGTATTTATTTGGCATGTCCTCTTTACTTCTGTACCTTTCTTTTTCATACTGCTTTGATGTGCGTTACTTGAGCAGAGGGTCTCTTGGAAACACCCTCTCTACCTCCACGAGGTAGGGATAAGGTCCGGGTACATTCTACCCTCCCCAGGCTCCACCTATTGAATTACACTGTGTATGCTGTTGTTTGTGTACACAAGTTGCTCTGACTAGAGACTTCTTAAACTTTTGTGATAATTTTTTTTTCTTGAACAGCTGGTTGACTAATGAAGTATTCCTAAATTTTTTGGACTGTTAATTGTAGCTGCTGATTTTCCTGTTTAGTTCAGCAAAGAAAGCTGTTATTGCATATTTGGATTGTATGCCGTGTATTTTTTTATTTTTTTATTTTTTTTGTAAATTCTTGAATATTGTTGGGTCTGGAGAAGAAAATCTTATTGATTTGTCTATGCTGTATTTTAACTTCAGATTCAGCATCCAAGGTCCCGTTTGGACAGGTTCGACATGGTAATCACCCCCAAGCATGACTATTACTCTTTAACTCCTCAAGGAAAGGAACAAGTTCCTCGTTTTCTGCAAAAGTGGATAACACCCCAAGAACCACCTGATAAGCATGTTGTAGGTATCCTCAACATTTATATTTAGTTTTAGCATGTAATGTAATATATTTCTGTGTTGAGAGCTTTTGTACCTACATTGCTGAACTATGAATTTTGTTTTCTGGAAAGGTACTTACGGTAGGAGCTCTACATCAAGTTGATTTTGCTGCTCTTAGAGCTGCAGCTGCCACCTGGCATGAAGAGTTTGCACCTTTGCCGAAGCCCTTATTGG</genome_strand>
        <mrna_strand>AAAAACCTTGTTGTCCTCCCCACGAAATCATCAAATAGAA---AGAAGAAAAATCAACTTTTTTTTTTGGCCTTTGCGGTTATCTAAAGCCATCATCAGTCATCAACAGGTTATTTGAAGTGAAATCGATCTTCTACATTTCTAGGGTTTGATAACTTTTTTTTTTCAATTTCGGTATAAATGAAGCCGATACGGTTACCGGAACCTCCAGCAAGTCCACGAGGAATGGGCGGTGTGCCGGATATATTTGAAGGTGTAGTTCATGGTGCGATTAGGCGAGCTGTTGTCATCGGTAATGGTTTTCCTGCTTCGGAGAATCAAAGTATTGGTTTGATTCAAGCACTCGGCCTCTCCGATAAGCACACTCTATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTTACTAGACCAAGAGGAGGAGTCAATGAGTGGCTACACTGGCTTCCTGTATCATTACACAAAAAGTTGTATTACATCATAAGCCAGATATGTGGGATTCTATTCAGAAGAAGGGCTAGACAACTAGGAACTTTGCCTATGGAAAATGGTGGCAATGTAGGCTTGTCATCTATTTTGGAAGCTGACGTGAAGAGTATAGTTAGAATGGCTCGCGAGACATTTGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGTCCATTGCTGGTGATTGCATCTGGAAGAGATACGATCTCAATTACTAGCTCCATTAAAAGATTGGCATCTGATAATGTTTTTGTTGTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAGCATCCAAGGTCCCGTTTGGACAGGTTCGACTTGGTAATCACCCCCAAGCATGACTATTACTCTTTAACTCCTCAAGGAAAGGAACAAGTTCCTCGTTTTCTGCACAAATGGATAACACCCCATGAACCACCTGATAAACATGTT..............................................................................................................GTACTTACGGTAGGAGCTCTACATCAAGTTGATTTTGCTGCGCTTAGAGCTGCAGCCGCCACCTGGCATGAAGAGTTTGCACCTTTGCCGAAGCCCTTATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M17-R" ref_strand="+" ref_description="SGN-M17-R TG46-R [rflp_markers_reverse]">
      <seq>ctgcaggtttctttatttaataagctgcttcttatggtgagaaacctgagagcagagtcagatcgcatgcatgcattagcatgcatttgtcgaaccgctctctgtgttgatctttttgcaaaagagagtgttagaagagggcaaaaacctgttcctggaaccgatattgcttcactttttgagaatgcaagaataaaagaggacctccatagtgtaacaagtaaaaccttgtttagagaagaactagttgcaatgctggtggagagctgctttcagttatcactgccacttcctgaacaaaaaaattcaggtatggagagcagagttattggagctttagcatatggaactggttatggtgcattaaactggacagaaccagctttggaagtggtggaagtttgtagaccatgtgtcaaatgggattgtgaaggtcgaacatatgctattgactgctatttgaagttgcttgtcaggctttgtcacatttatgatacaagaggaggtgtgaaaagagtcaaagatggggcttctcaggaccagattctgaatgaaacgcggttgcagaatttgcaaagggatcttgtcaaagatctacgtgaggtttgttgagcttttatagttatttaatgacacatgtaatatgcaatttgtccttggagattgttctagcccatggaattgtatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="42077" stop="43365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42377" g_stop="43065" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="689" r_length="689" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-M17-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M17-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42377" e_stop="43065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAGGTTTCTTTATTTAATAAGCTGCTTCTTATGGTGAGAAACCTGAGAGCAGAGTCAGATCGCATGCATGCATTAGCATGCATTTGTCGAACCGCTCTCTGTGTTGATCTTTTTGCAAAAGAGAGTGTTAGAAGAGGGCAAAAACCTGTTCCTGGAACCGATATTGCTTCACTTTTTGAGAATGCAAGAATAAAAGAGGACCTCCATAGTGTAACAAGTAAAACCTTGTTTAGAGAAGAACTAGTTGCAATGCTGGTGGAGAGCTGCTTTCAGTTATCACTGCCACTTCCTGAACAAAAAAATTCAGGTATGGAGAGCAGAGTTATTGGAGCTTTAGCATATGGAACTGGTTATGGTGCATTAAACTGGACAGAACCAGCTTTGGAAGTGGTGGAAGTTTGTAGACCATGTGTCAAATGGGATTGTGAAGGTCGAACATATGCTATTGACTGCTATTTGAAGTTGCTTGTCAGGCTTTGTCACATTTATGATACAAGAGGAGGTGTGAAAAGAGTCAAAGATGGGGCTTCTCAGGACCAGATTCTGAATGAAACGCGGTTGCAGAATTTGCAAAGGGATCTTGTCAAAGATCTACGTGAGGTTTGTTGAGCTTTTATAGTTATTTAATGACACATGTAATATGCAATTTGTCCTTGGAGATTGTTCTAGCCCATGGAATTGTATGT</genome_strand>
        <mrna_strand>CTGCAGGTTTCTTTATTTAATAAGCTGCTTCTTATGGTGAGAAACCTGAGAGCAGAGTCAGATCGCATGCATGCATTAGCATGCATTTGTCGAACCGCTCTCTGTGTTGATCTTTTTGCAAAAGAGAGTGTTAGAAGAGGGCAAAAACCTGTTCCTGGAACCGATATTGCTTCACTTTTTGAGAATGCAAGAATAAAAGAGGACCTCCATAGTGTAACAAGTAAAACCTTGTTTAGAGAAGAACTAGTTGCAATGCTGGTGGAGAGCTGCTTTCAGTTATCACTGCCACTTCCTGAACAAAAAAATTCAGGTATGGAGAGCAGAGTTATTGGAGCTTTAGCATATGGAACTGGTTATGGTGCATTAAACTGGACAGAACCAGCTTTGGAAGTGGTGGAAGTTTGTAGACCATGTGTCAAATGGGATTGTGAAGGTCGAACATATGCTATTGACTGCTATTTGAAGTTGCTTGTCAGGCTTTGTCACATTTATGATACAAGAGGAGGTGTGAAAAGAGTCAAAGATGGGGCTTCTCAGGACCAGATTCTGAATGAAACGCGGTTGCAGAATTTGCAAAGGGATCTTGTCAAAGATCTACGTGAGGTTTGTTGAGCTTTTATAGTTATTTAATGACACATGTAATATGCAATTTGTCCTTGGAGATTGTTCTAGCCCATGGAATTGTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M17-F" ref_strand="+" ref_description="SGN-M17-F TG46-F [rflp_markers_forward]">
      <seq>tattaaccgacactgatgtttgttcactgagtcagctaatgcattggtcctaaactcttcaagttcttttattagcaattgccctgccctgggattacgtgatcccaacctctgagcacacagaagaactgcttgaacatcttgaaggcgatttgtgctgctggcagacgaatctatattgaagagaactttgtggatatttgatattattatattcaggggatcttctggatcatcagccagaagtggatccaaaccttctagatcaatatgctctgagatagcccaaataagtcgagtacatattctaggagtgttcacctgcaagatgcaagttccagacaaatttaagaaacaatatgtcacctggttagtgaagtagtacagaaggttggaacatgacaaaggtgagcctgaagtagaacagaaattactaaataaaactcaattgtggaagaaaagcaccccgaataacttcagattatatatagctttaccttctccccttcccttcagttcagtattatgaaggaagggggacatagtcagagaaggtgtagagttcctttagcggatgacatgctgatgaacaaactctgtgcagctcaatatcatcttagcataggaaaaaaactaagaaaagttaagctagaataatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="44209" stop="42950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43909" g_stop="43250" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-M17-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M17-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43909" e_stop="43250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAACCGACACTGATGTTTGTTCACTGAGTCAGCTAATGCATTGGTCCTAAACTCTTCAAGTTCTTTTATTAGCAATTGCCCTGCCCTGGGATTACGTGATCCCAACCTCTGAGCACACAGAAGAACTGCTTGAACATCTTGAAGGCGATTTGTGCTGCTGGCAGACGAATCTATATTGAAGAGAACTTTGTGGATATTTGATATTATTATATTCAGGGGATCTTCTGGATCATCAGCCAGAAGTGGATCCAAACCTTCTAGATCAATATGCTCTGAGATAGCCCAAATAAGTCGAGTACATATTCTAGGAGTGTTCACCTGCAAGATGCAAGTTCCAGACAAATTTAAGAAACAATATGTCACCTGGTTAGTGAAGTAGTACAGAAGGTTGGAACATGACAAAGGTGAGCCTGAAGTAGAACAGAAATTACTAAATAAAACTCAATTGTGGAAGAAAAGCACCCCGAATAACTTCAGATTATATATAGCTTTACCTTCTCCCCTTCCCTTCAGTTCAGTATTATGAAGGAAGGGGGACATAGTCAGAGAAGGTGTAGAGTTCCTTTAGCGGATGACATGCTGATGAACAAACTCTGTGCAGCTCAATATCATCTTAGCATAGGAAAAAAACTAAGAAAAGTTAAGCTAGAATAATGC</genome_strand>
        <mrna_strand>TATTAACCGACACTGATGTTTGTTCACTGAGTCAGCTAATGCATTGGTCCTAAACTCTTCAAGTTCTTTTATTAGCAATTGCCCTGCCCTGGGATTACGTGATCCCAACCTCTGAGCACACAGAAGAACTGCTTGAACATCTTGAAGGCGATTTGTGCTGCTGGCAGACGAATCTATATTGAAGAGAACTTTGTGGATATTTGATATTATTATATTCAGGGGATCTTCTGGATCATCAGCCAGAAGTGGATCCAAACCTTCTAGATCAATATGCTCTGAGATAGCCCAAATAAGTCGAGTACATATTCTAGGAGTGTTCACCTGCAAGATGCAAGTTCCAGACAAATTTAAGAAACAATATGTCACCTGGTTAGTGAAGTAGTACAGAAGGTTGGAACATGACAAAGGTGAGCCTGAAGTAGAACAGAAATTACTAAATAAAACTCAATTGTGGAAGAAAAGCACCCCGAATAACTTCAGATTATATATAGCTTTACCTTCTCCCCTTCCCTTCAGTTCAGTATTATGAAGGAAGGGGGACATAGTCAGAGAAGGTGTAGAGTTCCTTTAGCGGATGACATGCTGATGAACAAACTCTGTGCAGCTCAATATCATCTTAGCATAGGAAAAAAACTAAGAAAAGTTAAGCTAGAATAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6760-2" ref_strand="+" ref_description="SGN-M6760-2 C2_At1g30825-2 [cosii_markers]">
      <seq>gacaaaagagaaatcaaacttttaataacaaaacttcatcaaattgcccattcaagattctttgatttctgtttctttctaatttctctgagttttcaaagaacccaaactgtgaatttgttgtgtgaaagagatcgatgatattactgcaatctccctctagatatctccttcagatcttgtacaatcgcgtccagaatcttgagaaaggagttgaactggactgccaatgggttgaatttgatgatatccgttaccatattcagggttcagtgaaaaatccaaatgtcctgcttctttctgtatcattgcccataccacctccagaaactgtcctctttggtggacttccacttggagcgctagaagccataaaagcagcatatggtgtagttgcacaaattcttgatcctccaagagatgggtttaatctcacacttaaactaaacttgtcaaaacttcccccagatgaagagcaaaaacatgcactcctgacaaagattgcatcggtgagggaggtagtaatgggagccccactgagggcagttttgaaacaacttgttacaaggacagttccttccgatctaggcaagcccgttgccctggttcatcgtcctaacgagtcttttttccttgtacctcaggcagacaaggtgactgtcatatttcctatgagatttaatgattccatagatactgttctagcaacatctttcttacaggaatttgttgaggcaaggcgaactgctggacttaacaatgcccctccttgtttatggtctccatctcctcctcaagaactgacagaagcttttacagaagcattatctgctaatgccggatttgttagttttgtaattttttctcgccacgtggaaggcagaaagctggacagaactgtctggaacctatcaacctttcatgcttatgtaaattatcatgttaagtgttctgaatgtttcatgcatactcgaatgaggcgtcaggtggagtcattgatacaggcacttgaccgtgccaaaccagatcccgagaaggccaagaaaaattcacctaacagatcatttaaacgaatgagcctcaaggatggcaataacagtttgggttcgcgaagttggaagtagaaaattggagaattgaaggttacttggcctgaaattatagtaaacaccgcctcttctctaataaactccattttacttatcgtgtttatgtttatagttgtcgttgtaaatcttattgaattgtcttcggcgttagatttaaacttagccatcttgctgaagcttcaagttttggttagcagattgcatttgtttagggtcatgccaattagtgtaagatttgctttgtaacaacttgcaatattcccattttataaagatgcatttttgcttatgctctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="71168" stop="62562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70868" g_stop="70670" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70669" i_stop="69055" i_length="1615">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69054" g_stop="68988" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="266" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68987" i_stop="68790" i_length="198">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68789" g_stop="68582" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="474" r_length="208" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68581" i_stop="66920" i_length="1662">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66919" g_stop="66750" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="644" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66749" i_stop="66238" i_length="512">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66237" g_stop="66160" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="722" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66159" i_stop="65289" i_length="871">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.684" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65288" g_stop="65156" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="855" r_length="133" r_score="0.970"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65155" i_stop="65082" i_length="74">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65081" g_stop="64990" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="856" r_stop="947" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="64989" i_stop="64201" i_length="789">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64200" g_stop="64144" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="948" r_stop="1004" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="64143" i_stop="63351" i_length="793">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="63350" g_stop="63279" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1005" r_stop="1076" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="63278" i_stop="63198" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="63197" g_stop="62862" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1077" r_stop="1408" r_length="332" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1409" polyA_stop="1418"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-M6760-2" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>1412</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6760-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70868" e_stop="70670"/>
          <exon e_start="69054" e_stop="68988"/>
          <exon e_start="68789" e_stop="68582"/>
          <exon e_start="66919" e_stop="66750"/>
          <exon e_start="66237" e_stop="66160"/>
          <exon e_start="65288" e_stop="65156"/>
          <exon e_start="65081" e_stop="64990"/>
          <exon e_start="64200" e_stop="64144"/>
          <exon e_start="63350" e_stop="63279"/>
          <exon e_start="63197" e_stop="62862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAAAGAGAAATCAAACTTTTAATAACAAAACTTCATCAAATTGTCCATTCAAGATTCTTTGATTTTCTGTTTCTTTCTAATTTCTTTGA-TTTTCAAAGAACCCAAACTGCGAATTTGTTTTGTGAAAGAGATCGATGATATTACTGCAATCTCCCTCTAGATATCTTCTTCAGATCTTGTACAATCGCGTCCAGAGGTAAGCTTAAATCCATTTCACTTTTTTCACTTTTCCCTATTTTAAACACTTTTTTCGGGTCAATTTGTGGTTTAGGGTAGTCTGGATTGCATTATTGATTGATGTTTGCATAGTTTTTGCTCATTTTTGTGTATGATTATGAATATAAAAGTACTTGTATGTATCTGCTGGGATTAGCATAAGCATAAAGTTGCAATCTTTTAGTATTTTAAAAGAAAGTTAGGGTAGGAGAAGGGAAAGGGATTACAAAGTGTGGGAATCGAGAGCTTGGTGAAAGTTATGGTAGTCAGCTAATGAACTGAGCTAATAAGATTAAGCCTGGTTATGGAAGTGTGGATTGCATTATTGTTTATTTTTATAGGAGCTGATTGTATTGCAGCTAGATTGTTTAATGTTTGCATAGTTCTAGCTTATTTCTGTGCGTGGTTGTGAATATGAAAGAGTTTATATGCTTCTGCTGCATTAGCATTTGTTGTTGCACTTTCTTAAGCATAACGTTGCGATTTTTTTTCCCCGATAACCATGGTGTGTGAACCGGCTTTCGTGTACCTCCACTAAATCCACGGGATACGTTCCACTCCTCGCGCACCTTGACTAATTCCATGGGATATCCGCCACTTCCCACCACCAACAATTAATAGGTAACTTTATCCACCAAGGTTAGAACAAATGGGAAGAAATCACCAAGTATTTTTGTCTCTGTTGGGATTGAACATGAGATTTCATGGTTCTCAACCTACTTCATTGATCAGTAGGCCACACCCTGGGTGCTATTACATGGATTTGTTTGGAATGAGTATGTCCGATATTTAGCAAGCTCTAGTTGATTGAGTTACAGCTAGTATAGTTGATGTTTCTGTGTAGTTCCAACTCATTTCTGTGCTTGAGTACGAAGATGCGTTGCTAGGTATTAACATTTGTTGTTGCTCTAATTGAAGTGTAAAGATGTAATCTTTCAGTCATTAACACCCGTGATACATGGGTATATGGGTGAATGTTCTGTATGAGTATGTCCAATAGTTGGCAAGCTCTAGATGATCGCTATGTAGTGAAGCACGGAAATACTATGTGAATAATAACCATAATGTTGTAATGTGCATTTCCAAAAAATGCAAAAGTATTTCAACTTTTTCTACCTTTTGCATAACAGTTTGGAGAGTTGCATTTACTTCCTCGCATCCCAGGGAGCTGGAGTAGAGGATGAACATGAACTGCCTACACTATCAGTTACTGAAGTAGAATCAGCTTAATCAATCCAAAAGTGCTGCCAATAAAGTCACAAATGTTCAAAATTTGATTAATTGTTCAAGCATTAGCTACCGTGATATTAAAATTGATCATTTTAATTTGTTTACTTCCATTTAGTGATTTATCATGGGAACCCCTCCCTGTTAACAATATAGCATTCCGGTTCCTTTATTTGTCCAATTGCTCTTAGCTTATTCTTTCACCAAATGGTGTATGCTTAAAGTTCTAAAATATGACATACCTAGTTTTCTGATCCTTGAATCTTCCAAAAATTTGGCAGCCCTGTATTGCAAATAGAACCGATACCATTCCGTCATTTGTTTGAATAATCTGTAGTAGATGCTGACAGCACATCCTTATTTTGCAGTCTTGAGAAAGGGGTTGAACTGGACAGCCAATGGGTTGAATTTGATGATATCCGTTACCATATTCAGGTGAGTTATTATCATACAACAGTCCAATTTGATGATTTTGCTTTATTTTTTAACCAATTTTTTCACTTCAAAAGAAAAATGGAAGAACCACTAAACACATCATTATTTTAAAAATGTTAATTGAGATGGTCATATCTTATTTTGACATGCTGTCATCTATGATACATCTGGCTGGCTAATCTGTAACATATTCTGCAGGGTTCAGTGAAAAATCCAAATGTCTTGCTTCTTTCTGTATCATTGCCCATACCACCTCCAGAAACCGTCCTCTTTGGTGGACTTCCACTTGGAGCGCTAGAAGCCATAAAAGCAGCATATGGTGCAGTTGCACAAATTCTTGATCCTCCAAGAGATGGGTTTAATCTCACACTTAAACTAAACTTGTCAAAACTTCCCCCAGATGAAGGTTCTGCAAGTTTCCTCTTTAAGGTCATTATGAGCTTGCTATAGTTGTGCTGGATGGTATTAGGATGTTAGTCCAAACTGCATTACTAGAAAAGTTTGGGGGGTTCTTACTCTCCTAAGGGTAATCAAGAAATAAATGTGATCGCATCCGCTTCATGTTGCATGTCTATTTTAGCAAATTCTTTTTAATATAAGTTGAGAACACTCATTAATAAGCACACGTTCAGCACACACACATGAAAAAAGGGTTTCATTCTTCTCAGTTTCTATTCAGTTGAAAATTTCAGTGTTTCCTTTCTCTTGGAGTTTTTTTTTTTTTTTTGTTATGTGCATGTTTTCATTATTCCTAAAACTAAAAGGGAAATTGTCAATTTTTCACTCGTTCTTCTAGCTACGAAGAGTACAATTTATTGTCTGAGTAGTGGCAAAATATTTCAAGGAAAAAAAGATATAACTGTATGTTATACTAGTATGCAGCATTCACTGTTGGCTCGAAGTTGGGCCTCCAAGCTTCTGAATTTCTGTTCTTGAATATCATAGTTCAGTAAGTTATCTCTTAACAAAAGGATGCAAGTCCGATGAAAGATCTGTAACAGGAAACAATTAAACAAGCTAGAGTTTTTCTCTACAAAAATCACCTATTCATGTGTAAAAGTTGGCAACCATGTGTTGCCCAAAAGGAAAGGGCAAAGTCATCTGAATGTTGAGTATAGGGATTAAATTAAAGAGCCAGTTGGTTCACATTATCCAGAAAGAAAGTTCAACTGTGGCTAGCAATGGTGAATCAAACTTATCCATTTTCCTTTGAATCCCAGTCTTGTTGTCTTGTACTCCAGAATTTTTTTGACTTGATCTTCAATTGGTGGCTTTAGAACATTTGTTCCCCAAGAACAAATTTTGTACTCAAAGGAGAGACGTAAGCACAAAACAATCAGAGGTACTCAATGAACGCAAAAAAGTATACAAGCAGGGGAATAACTCCCTTTGGAATAAAGAATAAAAAGCCCCTGCCAAATTTAACTCTGTGTGCCATGGTTCACCTTTGATCTGTGTTATATGTTTGGATGCACCTTAGGTTAAAGCTTTTTGTAATATACTTCCTCCATGTGTTTCCTTTCAGTCCATTGAGTCCATTTTCCGTAATGGAGAACTATATAGCTTAACTATTTACAACTTCTTGAATATTGCACCACTAAAAGTCTCATTGCCCCTACTCTTATTCTTATAAAGTATTTGACATTACCTAAGAATAACCATATCTGTACTGCTGGTGGTATTATGAGGTATCCACCAAATCCAGGAGGAAAATATCCTCCTGGATGTTGCTGGTGCGTAAAATAAAAAACCATATTTCTACTTTCAGCACATCCCTCCTCACAATCCAACGTAATTTCAGCTTGGCTGTTGATCTTTTAGCTGGTCGGATTCGAGCTCCTAAGTGCAAACTTGGGATTGTAGTACAAGTCAATATGTAGCATTACACTTTCTTTATGAGTTCGTATACTTATTATTTCAGTTTTAAATTTGTGAACAGTTCTATGAGAGTACTAATTTTCAGAAAATCTTTGATACTTCTGAACCTGGGTGATTGTCTATTTTTGCTGAAAGTTTCTGTTACAATCCTGTAATATACATTGCTTATGATATTTCTTTCTGATTGTAGAGCAAAAACATGCACTCCTGACAAAGATTGCATCCGTGAGGGAGGTAGTAATGGGAGCCCCACTGAGGGCAGTTTTGAAACAACTTGTTACAAGGACAGTTCCTTCCGATCTAGGCAAGCCCGTTGCCCTGGTTCATCGTCCTAATGAGTCTTTTTTCCTTGTACCTCAGGTGAGTAATTTTATCTACTTTATAACATGCACAAGTGGTGAAAACTATAGTTTACCTCTATAGGCTTAAGTTCAATGAACATGAATCCATTTTAAAATGTTGTGGTGAAAAGTCAGTTTTTCACTATGAATCCATTTTCAAATTCTGCAGTGAAAACATTCTTTTACTTGTTGAGCTTGGGTACTATAGCTAAATCAACCAATTCTTTTGACAATAACCCCATGCGGATATCTTTCAGCCTACTTTGCCTCATTGACTCCAGAGTGATCCTGGCATATCCAAGTTCTTCCAGTACTTGTCTCCTTGTTTGTTAAGTGTTTCTGAACTTGTATCTGTATTTAGTTCCAACAATCCCCCCCCCCCCCCCCCACACACACACCCCAAATTTGTTTCTTAATAGGCATGAATTTTTGGAATGCATAAACGATGCACATTGTTGTTATTTTAGTATCTATCTTTGAGGACCTATAAAGTATTTAGATTAAATGATGCAATGTACTGGCTTTTTGCAGGCAGACAAGGTGACCGTCATATTTCCTATGAGATTCAATGATTCCATAGATACTGTTCTAGCAACATCTTTCTTACAGGTAAACTTCTACACGTTTTAATGTGTTCTTGTCCTTATCTTTATATCATCCCAATCCAAGAAATGAAAAGGTGTGAGAACTAATAGCTTCCAATAAAAGTAGTTTTATTAGAAAATTTCTTTTCATTTTGTTTTATGCTAACGGATTACTGTGGTAAACATTCTGATATTTGAACATCCAATTAAGCTTTCATTATGTGAAGACATTTAACTTGGGCCTAATTCAATTCCAAAAGCTAACTCTTGAGGAGAGGATTGCCTAAGACTATATAAAGAGACCACAATCATTTCCTCAACAAATGCGAGACTTAACACTCCCCAACATGCCCAAAGCTGGACAACTGAAGCGTGGATAACATAACACGGGGTCCAACATTGAGAAACACAAGAACATGGATTGATGAGTTTGGCTCTGATACCATGTTAAGAGATGGAACTTGGACCTAACTAAACCCTAAAAAAGCTAGCTCGTGGGGGAGGATTGCCCAAGATCTCATCAGAATACTACAACCAATTCCCTCGACCTGTGTGGGGCTTAACACATTACACATCCTATTAGTTTGAAGATTGTTTTGAAATTGGATACAATATGATTCGCTTCTTTGTAATCAATTTGCTTGTCACCTTCTTATAATCTTCAAGTAAGATTGAGGTTTTTATGCCATTTATGATACCAAAGAAACCTTATGTCTTCTGGGAAGACTTGAAAGTGCAATAGTTGTATATAGGTCATTGTCTTTGAAAAAAAAATCCAGCTCTTTCATTCAATTTTCTTGCAAGATTTTTGGTGCTTCTCTTTCCCATTGGGATATTAATCTTCATGTGCCTGAATGAGTAGGGTGGCTCACTCTTTGAAATATGATTCTCATCAGGAATTTGTTGAGGCAAGACGAACTGCTGGACTTAATAATGCCCCTCCTTGTTTGTGGTCTCCTTCTCCTCCTCAAGAACTGACAGAAGCTTTTACAGAAGCATTATCTGCTAATGCCGGATTTGTTAGTTTTGGTATAACAGATATTTTAACTAGTTTTTACATTGATATTTTGTGATTCCCATGACCAACTTATTTTTTGACACAGTAATTTTTTCTCGCCACGTGGAAGGCAGAAAGCTGGACAGAACTGTCTGGAACCTATCAACCTTTCATGCTTATGTAAATTATCATGTTAAGGTGAGAATTCTAGACCAAAAGTTTCTTATCTATTGACCTAATTATGTCACATTAATGTGCTTCCATACTTGATGCAACACAATTCACGACGTCTTATGTCAGAAGCTCCCTAGTGAATCTTGAATATGTGCTTTGAAAGATTTTTGTAAATGATGAAGCCCTTCAACCTTATAGAAGGCCTTGCTGACTAAAGATAGAAAGCTTCACTCATAATTATATTCCTATATTTTAATAACTACTTTCTTCTATATTTCTGTGACTGTAAAATTTTAGACAAGGATTCTTCATTCTATTATAATTTTTTAAAGCTCTTCATTCTTTGAATCCATGAAATTAAAATTTCCCACACAGTGGATGCTTGGCATTATATATATATGTGACCTTTTATTCTTTTTTTGGAGAATATGAAGACTAAAATGCCACCACACATATATATCCCAATAGCTAAAGCTTTTTGTAATGATTTCTAATTCAGGCTTTTGTAACCAAACCTGTATAGTGTTCCTGGAGATTTAGTACTGGAATCTGTAGATCCTTGAAGCAGTTTATCTATGGAGGTCTTGAGTCTGTTAAAGTCTTGCAACTGCATCCACTGGGTTACTTGTGTATTTACTAACTTGGATTATTTCAAAGAAACGATCTTTCTCAAGTGAAGTGATCAATTTATGGCACATGTTGAGATTTTCATAACCATTACTGCATGCCTCAATAGCTTTTAATATGATAATATTATTTCTGTCAAACTTTATATCCGAAATTTAATCACTTCGATGTTTTTTCTGTAAACAGTGTTCTGAATGTTTCATGCATACTCGGATGAGGCGTCAGGTGGAGTCATTGATACAGGTAATTATCAATCTTTCATGATAAATTTAGAAACAATAGAATAGCAGGTTTATTGCATTCTGTAATACAAATGTATACTTGGCAATGACCACCTATAAAGAATGCTAATTGGGAAGTTTGCTAAATTTTATATCCGAGGTTGCTTTTTTTTTTTTTTTAACCTTTTTGCTGAAAGAATCATGGCAACTGTTTACTTTTAGCAAAAAGTTCACGCTTGTTCTGATGAGGCTGAATGTAGAGGTTTCTTATGGTTCTTCGTGCAATCCTATTAAAATGTCTGAGTTTGTTTCTCTTGGGCATTAGGTGATTTCCGTTTTGTGTTTTTCCATGAAGCATGTTCATCAAAGTCATTCTACGAAAAAGCTAAATGGTTAATGTCCAATCTTGTTCTTGTATGACCGGCACATTCATCTTAGTATCTACATCTCTGCAACTCTCATCTTGTCGATACGATGGAACTCTAGCAGCCCACATTCACTCTCATATAACATTACTGGTTTTATACTATATAATACTTGTTGCTTAAATGGCGTTTATGTGACCTTCCGAACACGATGCTTGATGATCCTAGTGCCTTTTAAGAACTGAAGTCCCACATGTATCTCAGCTTTAATTCAATTTTCCGTTTTGACATCACATTCTGCCTACTCAACTGCATTGTTTCGTCTTACTGCAGTTCCTTGTAACTAAAATGCCCCGGGACTCATTTCTTGAATTATTTTCTTGTTTAGCTGATCCTAGAACTTGTAAGTTTGTTGTTTGCGGGTTCACAACATTCATAACTCTTCTGCAGGCACTTGACCGTGCCAAACCAGATCCCGAGAAGGCCAAGAAAAATTCACCTAACAGATCATTTAAACGAATGGTAAGTCATTTGATTTGTTTGATCTCTACACCAAATCGTTTCTTACTATCTAATCTGTTTTCTTTCTTGACATTTATATAGAGCCTCAAGGATGGCAATAACAGTTTGGGTTCGCGAAGTTGGAAGTAGAAAATCCGAGAATTGAAAAGGTTACTTGGCCTGAAATCATCGTAAACGCAGCTTCTTCTCTAATAAACTCCATTTTTTTTCATCGTGTTCATGTTTATAGTTGTCGTTGTAAATCTCATTGAATTGTCTTCGGCGTTAGATTTGAACTTAGCCATCTTTGCTGAAGCTTCAAGTTTTGGTTAGCAGATTGCATTCGTTTTAGTTC-TGCAAAGTAGTGTAAAGATTGCTTTGTAACAACTTGCAATATTCCCATTTTATAAAGTTGCATTTTTTGCTTATGCTCTAAAA</genome_strand>
        <mrna_strand>GACAAAAGAGAAATCAAACTTTTAATAACAAAACTTCATCAAATTGCCCATTCAAGATTCTTTGA-TTTCTGTTTCTTTCTAATTTCTCTGAGTTTTCAAAGAACCCAAACTGTGAATTTGTTGTGTGAAAGAGATCGATGATATTACTGCAATCTCCCTCTAGATATCTCCTTCAGATCTTGTACAATCGCGTCCAGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGAGAAAGGAGTTGAACTGGACTGCCAATGGGTTGAATTTGATGATATCCGTTACCATATTCAG......................................................................................................................................................................................................GGTTCAGTGAAAAATCCAAATGTCCTGCTTCTTTCTGTATCATTGCCCATACCACCTCCAGAAACTGTCCTCTTTGGTGGACTTCCACTTGGAGCGCTAGAAGCCATAAAAGCAGCATATGGTGTAGTTGCACAAATTCTTGATCCTCCAAGAGATGGGTTTAATCTCACACTTAAACTAAACTTGTCAAAACTTCCCCCAGATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAAAACATGCACTCCTGACAAAGATTGCATCGGTGAGGGAGGTAGTAATGGGAGCCCCACTGAGGGCAGTTTTGAAACAACTTGTTACAAGGACAGTTCCTTCCGATCTAGGCAAGCCCGTTGCCCTGGTTCATCGTCCTAACGAGTCTTTTTTCCTTGTACCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGACAAGGTGACTGTCATATTTCCTATGAGATTTAATGATTCCATAGATACTGTTCTAGCAACATCTTTCTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTGTTGAGGCAAGGCGAACTGCTGGACTTAACAATGCCCCTCCTTGTTTATGGTCTCCATCTCCTCCTCAAGAACTGACAGAAGCTTTTACAGAAGCATTATCTGCTAATGCCGGATTTGTTAGTTTTG..........................................................................TAATTTTTTCTCGCCACGTGGAAGGCAGAAAGCTGGACAGAACTGTCTGGAACCTATCAACCTTTCATGCTTATGTAAATTATCATGTTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCTGAATGTTTCATGCATACTCGAATGAGGCGTCAGGTGGAGTCATTGATACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGACCGTGCCAAACCAGATCCCGAGAAGGCCAAGAAAAATTCACCTAACAGATCATTTAAACGAATG.................................................................................AGCCTCAAGGATGGCAATAACAGTTTGGGTTCGCGAAGTTGGAAGTAGAAAATTGGAGAATTG--AAGGTTACTTGGCCTGAAATTATAGTAAACACCGCCTCTTCTCTAATAAACTCCATTTTACTT-ATCGTGTTTATGTTTATAGTTGTCGTTGTAAATCTTATTGAATTGTCTTCGGCGTTAGATTTAAACTTAGCCATC-TTGCTGAAGCTTCAAGTTTTGGTTAGCAGATTGCATTTGTTTAGGGTCATGCCAATTAGTGTAAGATTTGCTTTGTAACAACTTGCAATATTCCCATTTTATAAAGATGCA-TTTTTGCTTATGCTCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M365-F" ref_strand="+" ref_description="SGN-M365-F TG121-F [rflp_markers_forward]">
      <seq>ggggatcctcagagtcgacctccantagacgaaacatgcagttgagtaggcagaatgtgatgtcaaacggaaaattgaattaaagctgagatacatgtgggacttcagttcttaaaaggcactaggatcatcaagcatcgtgttcggaaggtcacataaacgccatttaagcaacaagtattatatagtataaaaccagtaatgttatatgagagtgaatgtgggctgctagagttccatcgtatcgacaagatgagagttgcagagatgtagatactaagatgaatgtgccggtcatacaagaacaagattggacattaaccatttagctttttcgtagaatgactttgatgaacatgcttcatggaaaaacacaaaacggaaatcacctaatgcccaagagaaacaaactcagacattttaataggattgcacgaagaaccataagaaacctctacattcagcctcatcagaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="63165" stop="64228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63465" g_stop="63928" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="477" r_length="461" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-M365-F" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M365-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63465" e_stop="63928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTGCAGTAAGACGAAACAATGCAGTTGAGTAGGCAGAATGTGATGTCAAAACGGAAAATTGAATTAAAGCTGAGATACATGTGGGACTTCAGTTCTTAAAAGGCACTAGGATCATCAAGCATCGTGTTCGGAAGGTCACATAAACGCCATTTAAGCAACAAGTATTATATAGTATAAAACCAGTAATGTTATATGAGAGTGAATGTGGGCTGCTAGAGTTCCATCGTATCGACAAGATGAGAGTTGCAGAGATGTAGATACTAAGATGAATGTGCCGGTCATACAAGAACAAGATTGGACATTAACCATTTAGCTTTTTCGTAGAATGACTTTGATGAACATGCTTCATGGAAAAACACAAAACGGAAATCACCTAATGCCCAAGAGAAACAAACTCAGACATTTTAATAGGATTGCACGAAGAACCATAAGAAACCTCTACATTCAGCCTCATCAGAACA</genome_strand>
        <mrna_strand>GACCTCCANT-AGACGAAAC-ATGCAGTTGAGTAGGCAGAATGTGATGTC-AAACGGAAAATTGAATTAAAGCTGAGATACATGTGGGACTTCAGTTCTTAAAAGGCACTAGGATCATCAAGCATCGTGTTCGGAAGGTCACATAAACGCCATTTAAGCAACAAGTATTATATAGTATAAAACCAGTAATGTTATATGAGAGTGAATGTGGGCTGCTAGAGTTCCATCGTATCGACAAGATGAGAGTTGCAGAGATGTAGATACTAAGATGAATGTGCCGGTCATACAAGAACAAGATTGGACATTAACCATTTAGCTTTTTCGTAGAATGACTTTGATGAACATGCTTCATGGAAAAACACAAAACGGAAATCACCTAATGCCCAAGAGAAACAAACTCAGACATTTTAATAGGATTGCACGAAGAACCATAAGAAACCTCTACATTCAGCCTCATCAGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6760" ref_strand="+" ref_description="SGN-M6760 C2_At1g30825 [cosii_markers]">
      <seq>aaaagagaaatcaaacttttaataacaaaacttcatcaaattgtccattcaagattctttgattttctgtttctttctaatttctttgattttcaaagaacccaaactgcgaatttgttttgtgaaagagatctatgatattactgcaatctccctctagatatcttcttcagatcttgtacaatcgcgtccagagtcttgagaaaggggttgaactggacagccaatgggttgaatttgatgatatccgttaccatattcagggttcagtgaaaaatccaaatgtcttgcttctttctgtatcattgcccataccacctccagaaaccgtcctctttggtggacttccacttggagcgctagaagccataaaagcagcatatggtgcagttgcacaaattcttgatcctccaagagatgggtttaatctcacacttaaactaaacttgtcaaaacttcccccagatgaagagcaaaaacatgcactcctgacaaagattgcatccgtgagggaggtagtaatgggagccccactgacggcagttctgacacaacttgttacaaggacagttccttccgatctangcaagcccgttgccctggatcatcgtcctaatgagtcttttttccttgtacctcaggcagacgatgtgaccgtcatatttcctatgagaatcaatgattccatagatactgttctagcaacatctttcttacaggaatgtgttgatgcaagacgaactgctggacttataatgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="71165" stop="64946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70865" g_stop="70670" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70669" i_stop="69055" i_length="1615">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69054" g_stop="68988" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="263" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68987" i_stop="68790" i_length="198">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68789" g_stop="68582" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="471" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68581" i_stop="66920" i_length="1662">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66919" g_stop="66750" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="641" r_length="170" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66749" i_stop="66238" i_length="512">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66237" g_stop="66160" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="719" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66159" i_stop="65289" i_length="871">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.684" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65288" g_stop="65246" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="761" r_length="42" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-M6760" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70865" e_stop="70670"/>
          <exon e_start="69054" e_stop="68988"/>
          <exon e_start="68789" e_stop="68582"/>
          <exon e_start="66919" e_stop="66750"/>
          <exon e_start="66237" e_stop="66160"/>
          <exon e_start="65288" e_stop="65246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGAAATCAAACTTTTAATAACAAAACTTCATCAAATTGTCCATTCAAGATTCTTTGATTTTCTGTTTCTTTCTAATTTCTTTGATTTTCAAAGAACCCAAACTGCGAATTTGTTTTGTGAAAGAGATCGATGATATTACTGCAATCTCCCTCTAGATATCTTCTTCAGATCTTGTACAATCGCGTCCAGAGGTAAGCTTAAATCCATTTCACTTTTTTCACTTTTCCCTATTTTAAACACTTTTTTCGGGTCAATTTGTGGTTTAGGGTAGTCTGGATTGCATTATTGATTGATGTTTGCATAGTTTTTGCTCATTTTTGTGTATGATTATGAATATAAAAGTACTTGTATGTATCTGCTGGGATTAGCATAAGCATAAAGTTGCAATCTTTTAGTATTTTAAAAGAAAGTTAGGGTAGGAGAAGGGAAAGGGATTACAAAGTGTGGGAATCGAGAGCTTGGTGAAAGTTATGGTAGTCAGCTAATGAACTGAGCTAATAAGATTAAGCCTGGTTATGGAAGTGTGGATTGCATTATTGTTTATTTTTATAGGAGCTGATTGTATTGCAGCTAGATTGTTTAATGTTTGCATAGTTCTAGCTTATTTCTGTGCGTGGTTGTGAATATGAAAGAGTTTATATGCTTCTGCTGCATTAGCATTTGTTGTTGCACTTTCTTAAGCATAACGTTGCGATTTTTTTTCCCCGATAACCATGGTGTGTGAACCGGCTTTCGTGTACCTCCACTAAATCCACGGGATACGTTCCACTCCTCGCGCACCTTGACTAATTCCATGGGATATCCGCCACTTCCCACCACCAACAATTAATAGGTAACTTTATCCACCAAGGTTAGAACAAATGGGAAGAAATCACCAAGTATTTTTGTCTCTGTTGGGATTGAACATGAGATTTCATGGTTCTCAACCTACTTCATTGATCAGTAGGCCACACCCTGGGTGCTATTACATGGATTTGTTTGGAATGAGTATGTCCGATATTTAGCAAGCTCTAGTTGATTGAGTTACAGCTAGTATAGTTGATGTTTCTGTGTAGTTCCAACTCATTTCTGTGCTTGAGTACGAAGATGCGTTGCTAGGTATTAACATTTGTTGTTGCTCTAATTGAAGTGTAAAGATGTAATCTTTCAGTCATTAACACCCGTGATACATGGGTATATGGGTGAATGTTCTGTATGAGTATGTCCAATAGTTGGCAAGCTCTAGATGATCGCTATGTAGTGAAGCACGGAAATACTATGTGAATAATAACCATAATGTTGTAATGTGCATTTCCAAAAAATGCAAAAGTATTTCAACTTTTTCTACCTTTTGCATAACAGTTTGGAGAGTTGCATTTACTTCCTCGCATCCCAGGGAGCTGGAGTAGAGGATGAACATGAACTGCCTACACTATCAGTTACTGAAGTAGAATCAGCTTAATCAATCCAAAAGTGCTGCCAATAAAGTCACAAATGTTCAAAATTTGATTAATTGTTCAAGCATTAGCTACCGTGATATTAAAATTGATCATTTTAATTTGTTTACTTCCATTTAGTGATTTATCATGGGAACCCCTCCCTGTTAACAATATAGCATTCCGGTTCCTTTATTTGTCCAATTGCTCTTAGCTTATTCTTTCACCAAATGGTGTATGCTTAAAGTTCTAAAATATGACATACCTAGTTTTCTGATCCTTGAATCTTCCAAAAATTTGGCAGCCCTGTATTGCAAATAGAACCGATACCATTCCGTCATTTGTTTGAATAATCTGTAGTAGATGCTGACAGCACATCCTTATTTTGCAGTCTTGAGAAAGGGGTTGAACTGGACAGCCAATGGGTTGAATTTGATGATATCCGTTACCATATTCAGGTGAGTTATTATCATACAACAGTCCAATTTGATGATTTTGCTTTATTTTTTAACCAATTTTTTCACTTCAAAAGAAAAATGGAAGAACCACTAAACACATCATTATTTTAAAAATGTTAATTGAGATGGTCATATCTTATTTTGACATGCTGTCATCTATGATACATCTGGCTGGCTAATCTGTAACATATTCTGCAGGGTTCAGTGAAAAATCCAAATGTCTTGCTTCTTTCTGTATCATTGCCCATACCACCTCCAGAAACCGTCCTCTTTGGTGGACTTCCACTTGGAGCGCTAGAAGCCATAAAAGCAGCATATGGTGCAGTTGCACAAATTCTTGATCCTCCAAGAGATGGGTTTAATCTCACACTTAAACTAAACTTGTCAAAACTTCCCCCAGATGAAGGTTCTGCAAGTTTCCTCTTTAAGGTCATTATGAGCTTGCTATAGTTGTGCTGGATGGTATTAGGATGTTAGTCCAAACTGCATTACTAGAAAAGTTTGGGGGGTTCTTACTCTCCTAAGGGTAATCAAGAAATAAATGTGATCGCATCCGCTTCATGTTGCATGTCTATTTTAGCAAATTCTTTTTAATATAAGTTGAGAACACTCATTAATAAGCACACGTTCAGCACACACACATGAAAAAAGGGTTTCATTCTTCTCAGTTTCTATTCAGTTGAAAATTTCAGTGTTTCCTTTCTCTTGGAGTTTTTTTTTTTTTTTTGTTATGTGCATGTTTTCATTATTCCTAAAACTAAAAGGGAAATTGTCAATTTTTCACTCGTTCTTCTAGCTACGAAGAGTACAATTTATTGTCTGAGTAGTGGCAAAATATTTCAAGGAAAAAAAGATATAACTGTATGTTATACTAGTATGCAGCATTCACTGTTGGCTCGAAGTTGGGCCTCCAAGCTTCTGAATTTCTGTTCTTGAATATCATAGTTCAGTAAGTTATCTCTTAACAAAAGGATGCAAGTCCGATGAAAGATCTGTAACAGGAAACAATTAAACAAGCTAGAGTTTTTCTCTACAAAAATCACCTATTCATGTGTAAAAGTTGGCAACCATGTGTTGCCCAAAAGGAAAGGGCAAAGTCATCTGAATGTTGAGTATAGGGATTAAATTAAAGAGCCAGTTGGTTCACATTATCCAGAAAGAAAGTTCAACTGTGGCTAGCAATGGTGAATCAAACTTATCCATTTTCCTTTGAATCCCAGTCTTGTTGTCTTGTACTCCAGAATTTTTTTGACTTGATCTTCAATTGGTGGCTTTAGAACATTTGTTCCCCAAGAACAAATTTTGTACTCAAAGGAGAGACGTAAGCACAAAACAATCAGAGGTACTCAATGAACGCAAAAAAGTATACAAGCAGGGGAATAACTCCCTTTGGAATAAAGAATAAAAAGCCCCTGCCAAATTTAACTCTGTGTGCCATGGTTCACCTTTGATCTGTGTTATATGTTTGGATGCACCTTAGGTTAAAGCTTTTTGTAATATACTTCCTCCATGTGTTTCCTTTCAGTCCATTGAGTCCATTTTCCGTAATGGAGAACTATATAGCTTAACTATTTACAACTTCTTGAATATTGCACCACTAAAAGTCTCATTGCCCCTACTCTTATTCTTATAAAGTATTTGACATTACCTAAGAATAACCATATCTGTACTGCTGGTGGTATTATGAGGTATCCACCAAATCCAGGAGGAAAATATCCTCCTGGATGTTGCTGGTGCGTAAAATAAAAAACCATATTTCTACTTTCAGCACATCCCTCCTCACAATCCAACGTAATTTCAGCTTGGCTGTTGATCTTTTAGCTGGTCGGATTCGAGCTCCTAAGTGCAAACTTGGGATTGTAGTACAAGTCAATATGTAGCATTACACTTTCTTTATGAGTTCGTATACTTATTATTTCAGTTTTAAATTTGTGAACAGTTCTATGAGAGTACTAATTTTCAGAAAATCTTTGATACTTCTGAACCTGGGTGATTGTCTATTTTTGCTGAAAGTTTCTGTTACAATCCTGTAATATACATTGCTTATGATATTTCTTTCTGATTGTAGAGCAAAAACATGCACTCCTGACAAAGATTGCATCCGTGAGGGAGGTAGTAATGGGAGCCCCACTGAGGGCAGTTTTGAAACAACTTGTTACAAGGACAGTTCCTTCCGATCTAGGCAAGCCCGTTGCCCTGGTTCATCGTCCTAATGAGTCTTTTTTCCTTGTACCTCAGGTGAGTAATTTTATCTACTTTATAACATGCACAAGTGGTGAAAACTATAGTTTACCTCTATAGGCTTAAGTTCAATGAACATGAATCCATTTTAAAATGTTGTGGTGAAAAGTCAGTTTTTCACTATGAATCCATTTTCAAATTCTGCAGTGAAAACATTCTTTTACTTGTTGAGCTTGGGTACTATAGCTAAATCAACCAATTCTTTTGACAATAACCCCATGCGGATATCTTTCAGCCTACTTTGCCTCATTGACTCCAGAGTGATCCTGGCATATCCAAGTTCTTCCAGTACTTGTCTCCTTGTTTGTTAAGTGTTTCTGAACTTGTATCTGTATTTAGTTCCAACAATCCCCCCCCCCCCCCCCCACACACACACCCCAAATTTGTTTCTTAATAGGCATGAATTTTTGGAATGCATAAACGATGCACATTGTTGTTATTTTAGTATCTATCTTTGAGGACCTATAAAGTATTTAGATTAAATGATGCAATGTACTGGCTTTTTGCAGGCAGACAAGGTGACCGTCATATTTCCTATGAGATTCAATGATTCCATAGATACTGTTCTAGCAACATCTTTCTTACAGGTAAACTTCTACACGTTTTAATGTGTTCTTGTCCTTATCTTTATATCATCCCAATCCAAGAAATGAAAAGGTGTGAGAACTAATAGCTTCCAATAAAAGTAGTTTTATTAGAAAATTTCTTTTCATTTTGTTTTATGCTAACGGATTACTGTGGTAAACATTCTGATATTTGAACATCCAATTAAGCTTTCATTATGTGAAGACATTTAACTTGGGCCTAATTCAATTCCAAAAGCTAACTCTTGAGGAGAGGATTGCCTAAGACTATATAAAGAGACCACAATCATTTCCTCAACAAATGCGAGACTTAACACTCCCCAACATGCCCAAAGCTGGACAACTGAAGCGTGGATAACATAACACGGGGTCCAACATTGAGAAACACAAGAACATGGATTGATGAGTTTGGCTCTGATACCATGTTAAGAGATGGAACTTGGACCTAACTAAACCCTAAAAAAGCTAGCTCGTGGGGGAGGATTGCCCAAGATCTCATCAGAATACTACAACCAATTCCCTCGACCTGTGTGGGGCTTAACACATTACACATCCTATTAGTTTGAAGATTGTTTTGAAATTGGATACAATATGATTCGCTTCTTTGTAATCAATTTGCTTGTCACCTTCTTATAATCTTCAAGTAAGATTGAGGTTTTTATGCCATTTATGATACCAAAGAAACCTTATGTCTTCTGGGAAGACTTGAAAGTGCAATAGTTGTATATAGGTCATTGTCTTTGAAAAAAAAATCCAGCTCTTTCATTCAATTTTCTTGCAAGATTTTTGGTGCTTCTCTTTCCCATTGGGATATTAATCTTCATGTGCCTGAATGAGTAGGGTGGCTCACTCTTTGAAATATGATTCTCATCAGGAATTTGTTGAGGCAAGACGAACTGCTGGACTTAATAATGCCC</genome_strand>
        <mrna_strand>AAAAGAGAAATCAAACTTTTAATAACAAAACTTCATCAAATTGTCCATTCAAGATTCTTTGATTTTCTGTTTCTTTCTAATTTCTTTGATTTTCAAAGAACCCAAACTGCGAATTTGTTTTGTGAAAGAGATCTATGATATTACTGCAATCTCCCTCTAGATATCTTCTTCAGATCTTGTACAATCGCGTCCAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGAGAAAGGGGTTGAACTGGACAGCCAATGGGTTGAATTTGATGATATCCGTTACCATATTCAG......................................................................................................................................................................................................GGTTCAGTGAAAAATCCAAATGTCTTGCTTCTTTCTGTATCATTGCCCATACCACCTCCAGAAACCGTCCTCTTTGGTGGACTTCCACTTGGAGCGCTAGAAGCCATAAAAGCAGCATATGGTGCAGTTGCACAAATTCTTGATCCTCCAAGAGATGGGTTTAATCTCACACTTAAACTAAACTTGTCAAAACTTCCCCCAGATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAAAACATGCACTCCTGACAAAGATTGCATCCGTGAGGGAGGTAGTAATGGGAGCCCCACTGACGGCAGTTCTGACACAACTTGTTACAAGGACAGTTCCTTCCGATCTANGCAAGCCCGTTGCCCTGGATCATCGTCCTAATGAGTCTTTTTTCCTTGTACCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGACGATGTGACCGTCATATTTCCTATGAGAATCAATGATTCCATAGATACTGTTCTAGCAACATCTTTCTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGTTGATGCAAGACGAACTGCTGGACTT-ATAATGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M365-R" ref_strand="+" ref_description="SGN-M365-R TG121-R [rflp_markers_reverse]">
      <seq>tcttttactgttgactagggtactatagctaaatcaaccaattcttttgacaataaccccatgcggatatctttcagcctactttgcctcattgactccagagtgatcctggcatatccaagttcttccagtacttgtctccttgtttgttaagtgtttctgaacttgtatctgtatttagttccaacaatcccccccccccccccacacacacaccccaaatttgtttcttaataggcatgaatttttggaatgcataaacgatgcacattgttgttattttagtatctatctttgaggacctataaagtatttagattaaatgatgcaatgtactggctttttgcaggcagacaaggtgaccgtcatatttcctatgagattcaatgattccatagatactgttctagcaacatctttcttacaggtaaacttctacacgttttaatgtgttcttgtcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="66890" stop="65824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66590" g_stop="66124" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-M365-R" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M365-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66590" e_stop="66124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTACTTGTTGAGCTTGGGTACTATAGCTAAATCAACCAATTCTTTTGACAATAACCCCATGCGGATATCTTTCAGCCTACTTTGCCTCATTGACTCCAGAGTGATCCTGGCATATCCAAGTTCTTCCAGTACTTGTCTCCTTGTTTGTTAAGTGTTTCTGAACTTGTATCTGTATTTAGTTCCAACAATCCCCCCCCCCCCCCCCCACACACACACCCCAAATTTGTTTCTTAATAGGCATGAATTTTTGGAATGCATAAACGATGCACATTGTTGTTATTTTAGTATCTATCTTTGAGGACCTATAAAGTATTTAGATTAAATGATGCAATGTACTGGCTTTTTGCAGGCAGACAAGGTGACCGTCATATTTCCTATGAGATTCAATGATTCCATAGATACTGTTCTAGCAACATCTTTCTTACAGGTAAACTTCTACACGTTTTAATGTGTTCTTGTCCTT</genome_strand>
        <mrna_strand>TCTTTTAC-TGTTGA-CTAGGGTACTATAGCTAAATCAACCAATTCTTTTGACAATAACCCCATGCGGATATCTTTCAGCCTACTTTGCCTCATTGACTCCAGAGTGATCCTGGCATATCCAAGTTCTTCCAGTACTTGTCTCCTTGTTTGTTAAGTGTTTCTGAACTTGTATCTGTATTTAGTTCCAACAAT--CCCCCCCCCCCCCCCACACACACACCCCAAATTTGTTTCTTAATAGGCATGAATTTTTGGAATGCATAAACGATGCACATTGTTGTTATTTTAGTATCTATCTTTGAGGACCTATAAAGTATTTAGATTAAATGATGCAATGTACTGGCTTTTTGCAGGCAGACAAGGTGACCGTCATATTTCCTATGAGATTCAATGATTCCATAGATACTGTTCTAGCAACATCTTTCTTACAGGTAAACTTCTACACGTTTTAATGTGTTCTTGTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7922-2" ref_strand="+" ref_description="SGN-M7922-2 C2_At3g44380-2 [cosii_markers]">
      <seq>ctcctccatttttgccccccaatcaaaattcagtatcttctcagaccaatgagcaaagaaggaagaagaagaggagtaagatggagctggacctccgccttcgtcggcgccgccgctgccgcagcaacggtgatggcactctcttcaaagccacgggatcccgattttcatctcatctccatcgatctcacttccttcaagctcaatttccccgtcgtagacgcggaactcatcctcactgttcacgttactaaccctaacgttacttcaatcaactactcctcaacagaaatgtcgattttctactccggcgaccacctcggttcagctcgtgtcaaagccggatctcaaccgccgcgttcctgtcaggtactccgtcttccggcgaggttgagcggactgcaacttgcacatcacggtaaggaattcgtcgccgatgtagcgaagagggagatgttgttggatgctacggtggatatagaaggttttgctaaggtgatgtggtgggaccataaattccgggtgcacgtggatagtcacgtgactgtagacccggtttttcttgacgttattgatcaggaaaataaatcggctttggaggtcttcgttaaataacggttcagtccggttcactgtgttgtatcggtttactgtgttcactactaaatatcaggtctattagttgtaattcacttttgattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="85925" stop="87175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86211" g_stop="86864" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-M7922-2" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7922-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86211" e_stop="86864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCCATTTTTG--CCCCAATCAGTATTCAGTATCTTCTCCGACCAATGAGCAAAGAAGGAAGTAGAAGAGGAGTAAAATGGAGCTGGACCTCCGCCTTCGTCGGTGCCGCCGCTGCCGCAGCAACGGTGATGACACTCTCTTCGAAGCCACGGGATCCTGATTTTCATCTCATCTCCATCGATCTCACTTCCTTCAAGCTCAATTTCCCCGTCGTAGACGCGGAACTCATCCTCACCGTTCACGTGACTAACCCTAACGTTACTTCAATCAACTACTCCTCAACAGAAATGTCGATTTTCTACTCCGGCGATCACCTCGGTTCAGCTCGTGTGAAAGCCGGATCTCAGCCGCCGCGTTCCTGTCAGGTACTCCGTCTTCCGGCGAGGTTAAGCGGACTTCAACTTGCACATCACGGGAAGGAATTCGTCGCCGATGTAGCGAAGAGGGAGATGTTGCTGGATGCTACGGTGGATATAGAAGGTTTTGCGAAGGTGATGTGGTGGGACCATAAATTCCGGGTGCACGTGGATAGTCACGTGACCGTAGACCCGGTTTTTCTTGACGTTATTGATCAGGAAAATAAATCGGCTTTAGAGGTCTTTGTGAAATAACGGTTCAGTCCGGTTCAGTGTGTTGTATCGGTTTATTTTGT</genome_strand>
        <mrna_strand>CTCCTCCATTTTTGCCCCCCAATCAAAATTCAGTATCTTCTCAGACCAATGAGCAAAGAAGGAAGAAGAAGAGGAGTAAGATGGAGCTGGACCTCCGCCTTCGTCGGCGCCGCCGCTGCCGCAGCAACGGTGATGGCACTCTCTTCAAAGCCACGGGATCCCGATTTTCATCTCATCTCCATCGATCTCACTTCCTTCAAGCTCAATTTCCCCGTCGTAGACGCGGAACTCATCCTCACTGTTCACGTTACTAACCCTAACGTTACTTCAATCAACTACTCCTCAACAGAAATGTCGATTTTCTACTCCGGCGACCACCTCGGTTCAGCTCGTGTCAAAGCCGGATCTCAACCGCCGCGTTCCTGTCAGGTACTCCGTCTTCCGGCGAGGTTGAGCGGACTGCAACTTGCACATCACGGTAAGGAATTCGTCGCCGATGTAGCGAAGAGGGAGATGTTGTTGGATGCTACGGTGGATATAGAAGGTTTTGCTAAGGTGATGTGGTGGGACCATAAATTCCGGGTGCACGTGGATAGTCACGTGACTGTAGACCCGGTTTTTCTTGACGTTATTGATCAGGAAAATAAATCGGCTTTGGAGGTCTTCGTTAAATAACGGTTCAGTCCGGTTCACTGTGTTGTATCGGTTTACTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7922" ref_strand="+" ref_description="SGN-M7922 C2_At3g44380 [cosii_markers]">
      <seq>agtattcagtatcttctccgaccaatgagcaaagaaggaagtagaagaggagtaaaatggagctggacctccgccttcgtcggtgccgccgctgccgcagcaacggtgatgacactctcttcgaagccacgggatcctgattttcatctcatctccatcgatctcacttccttcaagctcaatttccccgtcgtagacgcggaactcatcctcaccgttcacgtgactaaccctaacgttacttcaatcaactactcctcaacagaaatgtcgattttctactccggcgatcacctcggttcagctcgtgtgaaagccggatctcagccgccgcgttcctgtcaggtactccgtcttccggcgaggttaagcggacttcaacttgcacatcacgggaaggaattcgtcgccgatgtagcgaagagggagatgttgctggatgctacggtggatatagaaggttttgcgaaggtgatgtggtgggaccataaattccgggtgcacgtggatagtcacgtgaccgtagacccggtttttcttgacgttattgatcaggaaaataaatcggctttagaggtctttgtgaaataacggttcaatccggttcagtgtgttgtatcggtttattttgtattcatcaccactaaaaatgtacttcagtaattaaaatatttaagttctatcggtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="85933" stop="87223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86233" g_stop="86916" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="688" polyA_stop="699"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-M7922" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86233" e_stop="86916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATTCAGTATCTTCTCCGACCAATGAGCAAAGAAGGAAGTAGAAGAGGAGTAAAATGGAGCTGGACCTCCGCCTTCGTCGGTGCCGCCGCTGCCGCAGCAACGGTGATGACACTCTCTTCGAAGCCACGGGATCCTGATTTTCATCTCATCTCCATCGATCTCACTTCCTTCAAGCTCAATTTCCCCGTCGTAGACGCGGAACTCATCCTCACCGTTCACGTGACTAACCCTAACGTTACTTCAATCAACTACTCCTCAACAGAAATGTCGATTTTCTACTCCGGCGATCACCTCGGTTCAGCTCGTGTGAAAGCCGGATCTCAGCCGCCGCGTTCCTGTCAGGTACTCCGTCTTCCGGCGAGGTTAAGCGGACTTCAACTTGCACATCACGGGAAGGAATTCGTCGCCGATGTAGCGAAGAGGGAGATGTTGCTGGATGCTACGGTGGATATAGAAGGTTTTGCGAAGGTGATGTGGTGGGACCATAAATTCCGGGTGCACGTGGATAGTCACGTGACCGTAGACCCGGTTTTTCTTGACGTTATTGATCAGGAAAATAAATCGGCTTTAGAGGTCTTTGTGAAATAACGGTTCAGTCCGGTTCAGTGTGTTGTATCGGTTTATTTTGTATTCATCACCACTAAAAATGTACTTCAGTAATTAAAATATTTAAGTTCTATC</genome_strand>
        <mrna_strand>AGTATTCAGTATCTTCTCCGACCAATGAGCAAAGAAGGAAGTAGAAGAGGAGTAAAATGGAGCTGGACCTCCGCCTTCGTCGGTGCCGCCGCTGCCGCAGCAACGGTGATGACACTCTCTTCGAAGCCACGGGATCCTGATTTTCATCTCATCTCCATCGATCTCACTTCCTTCAAGCTCAATTTCCCCGTCGTAGACGCGGAACTCATCCTCACCGTTCACGTGACTAACCCTAACGTTACTTCAATCAACTACTCCTCAACAGAAATGTCGATTTTCTACTCCGGCGATCACCTCGGTTCAGCTCGTGTGAAAGCCGGATCTCAGCCGCCGCGTTCCTGTCAGGTACTCCGTCTTCCGGCGAGGTTAAGCGGACTTCAACTTGCACATCACGGGAAGGAATTCGTCGCCGATGTAGCGAAGAGGGAGATGTTGCTGGATGCTACGGTGGATATAGAAGGTTTTGCGAAGGTGATGTGGTGGGACCATAAATTCCGGGTGCACGTGGATAGTCACGTGACCGTAGACCCGGTTTTTCTTGACGTTATTGATCAGGAAAATAAATCGGCTTTAGAGGTCTTTGTGAAATAACGGTTCAATCCGGTTCAGTGTGTTGTATCGGTTTATTTTGTATTCATCACCACTAAAAATGTACTTCAGTAATTAAAATATTTAAGTTCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7323-2" ref_strand="+" ref_description="SGN-M7323-2 C2_At2g27450-2 [cosii_markers]">
      <seq>tcacagtgtaaagcttcaaagagccaaaaatggcggagaagaatcgattagtcaccgttgctgctctgcagtttgcctgtaccgacgatgtctccaccaacgtcgctaccgccgagagattggttagagctgctcatcagaagggtgcaaatatcatcctcatacaggagttgttcgagggctattacttttgtcaagcacaaaaggaggagttctttcatcgagcaaaaccatatcaggggcatccaaccattgtcaggatgcaaaatcttgcgaaggagcttggagtagttattccagttagtttctttgaagaggcaaataatgcgcattacaattctgtggctataattgatgctgatggcacagatcttggactttacaggaagtcccatattcctgatggacctggttatcaggaaaagttttacttcaatcccggtgacactggttttaaggtattccagactaaatatgcaaaaattggagttgcaatttgctgggatcagtggtttcctgaggctgctcgagctatggcacttcaaggtgcagaagtattgttctaccctactgcaattggttctgaacctcaagatgatggacttgattctcgggatcactggaggagggtgatgcaaggacacgctggtgctaatgtggtacctttagtggcatcaaaccgcattggaaaggagataattgagacagagcatgggaatagtgagataacattctacggctactctttcatagcagggcccactggagagttggtagcagctgctggtgataaagaggaagctgttcttgtagcacagtttgatatggacaaaatcaagtccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="89681" stop="96473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89981" g_stop="90098" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90099" i_stop="91301" i_length="1203">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.285" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91302" g_stop="91350" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="167" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91351" i_stop="94357" i_length="3007">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94358" g_stop="94449" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="259" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94450" i_stop="94555" i_length="106">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94556" g_stop="94707" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="411" r_length="152" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94708" i_stop="94829" i_length="122">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94830" g_stop="94876" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="458" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94877" i_stop="94975" i_length="99">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94976" g_stop="95009" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="492" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95010" i_stop="95268" i_length="259">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95269" g_stop="95435" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="659" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="95436" i_stop="95887" i_length="452">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="95888" g_stop="95984" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="756" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="95985" i_stop="96083" i_length="99">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="96084" g_stop="96173" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="846" r_length="90" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-M7323-2" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7323-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89981" e_stop="90098"/>
          <exon e_start="91302" e_stop="91350"/>
          <exon e_start="94358" e_stop="94449"/>
          <exon e_start="94556" e_stop="94707"/>
          <exon e_start="94830" e_stop="94876"/>
          <exon e_start="94976" e_stop="95009"/>
          <exon e_start="95269" e_stop="95435"/>
          <exon e_start="95888" e_stop="95984"/>
          <exon e_start="96084" e_stop="96173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATAGTGT-AAGCTTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAGGTTTTTTTTTTTCGATTTCTTTTGTTGCACTTTTTGCGTTATTTGTGTTATGAATTTGAATTGAAATTCGATAGAACAGTAACTAAACTAGAATAGAGTCAATATATGAATTGAAACTAAAACTAAATAAATATAGCATAGATGAAGCTCTTGATCCCGATCTGAAATGAAAGAAGAAGAAGAAGACAGGATTAGAACTGCGTTGAAGAGGAGAGAAGAGGCAAGGAAGAAGTTGAGAATTGTTAGGATACCGGTTTTTTAATTTCTATTAGACTAGAAATAGGTTTATAAAATCCTATTTAGAATAGGAATAGGAATAGGAATAGGAATACAAATAGAATTAGGAATAGTAAATAGTATCCTACTTGGTAAAATGCAGACACAACAACAATTCATGATACGGTCACTCAACTGATAGTTATTATGTCACGAAGTCGCATTTTTAGATAATAAGTGATAGTTGGGTTTAAGTTTTTTCATTTCCAATAGAATTACAATTAATGACTATAGAATAAAGTTAGAAGACTTATGTTGTGTCCTCATATTTTATTCGTCGGTAGAGTTGTTTTATGTACTAAGAGGTTGATTTAATGTTATGAGTTTTTAGGCTTTCTTATAGCTCATTGAGAAAAGGGGGTTGGGATTTTGTGTTGTTGAGCATCTTCATAGTACCCAAAGATGTGACTTGTGGTGAATGAGAACCATGAGGTCTCGGGTATAAATTTGAGTGGAGGACAATTTATTAGGTGATTTCTTCCTATTTGTTCATGTTAAAGCCTTACTGGATGGATTTACCTAGTACCTAGTGAATGTAGCACTTATAGTGCAAATTAGTTGAGGTGTGTGCAAGTTGGTGACGACATCATGGTTATCGAGAAAAAAGTTATTGATCATCTATGTGTTGTTTAGATTTGTAACCATGAGGTCTCAGTTTTAAATTTGAGCGCAGGCAAAATTCCTAGGTGACTTTTTACTATTTATTCATGTTAAAGCCTTAGTGGACGGATTTACCTGGTACCTAGTGGAATGTAGCACTTATAGTGCAAATTATTTGAGGTGTGTGCAAGTTGGTAATGACACCATGATTATCCAGAAAAAAAAATGATTGATCATCTATTTGTTCTTTAGATTTGTAAAAGGGAATCAAGTTTGTCTTTTTGGTGGCATTTACATTTCTGGCTCTAAGATATTCCTTCGACGCAGATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAGGTAACAAACAGCCCAACTTTGGAATATCTAGCTACTACACAAAAGAACCATGGATGAAATACATTTTCTTTCTTTGGCGGAAGATAATTATTGATTAGGTTTACCTTTCTCAAGCAACAATATTCACTTCTCTCGGTGAGAACATTTCGTCAGCATTTTTATCCTTTGATCACATGCTGAAACTCTTATCTCTAGATTTTTGTTTGCCTTCGGGTTGTCTGATTGCCTCCTTTATGTGGTAGTCTATGCTGAGGCTGTTGTAAGTTATTTCAAAAGCTGAGTGGTCCGTAATGGATCGGAGAAGCGGAGACATTTGGTCTGTTTTATGCATTATTAGAATGTAACCAAAATGGAATCTAGTCATGTAAACATCATGTTATGACACTAGGAGTTGCTTGGCTAGTCGTCTATTTGAATTCCAGTTCTTAATCCAACTGTCCCTTAGGCTTGGGAGTAGATTTACTTCTGTCAGTATAATATAACTCTGAGCGAGTTAGGCTGAATTTCGGTAGGTCAAAACAAGCTTTGTTAATAAATGGTTGTGTCAATGACCCGCCCAAAAGTTACTTGGGCTGAAACAGGCTAAAAAGGGGGTCATAACCCAATCCATCCAATTTCTTTTTTATGACTATATACAGCATATCAAACAAAAAATGTCTTTTTAAAAATATTTTGTCCTGGTTTCTCATGGGTCACATTAGGCTACATGCCAGCCTTTTAGATGGTTTGAATTGGGTGGGATCAACATGGGCTAAATTTTCCACCCCCAACTCCAAGCAATTTTGGGTCTCCATTTACCAACTCAAACTCTGTTAAATGTGACAGAATAGTCATTAAGCTTTGTTATCTCAAACTGAAAGTATTTGTGTTTAACAGAGTGATAACTCTGCAATTCAAGTGTATAGAAAATTATATGTACAATTGAGTTTGTCAGTATCATTCCTAAGCTACAACTTTCCAAATAGTAAATTACTCCTAATTTTCTGCTAATAAAGGTTTTAATCAGTCCAATGAAACAGAAGCTAAATAATATGGGTTAGTGGAGAACTGTCTTTATTCAGGATATCGAGAACAGTGTAAAAATACCTAAACCCAAAAACATAGAAAGGGAGGAGATAATTAACAACTATACATTAGACCCTTATACTAATAGAATGAGAAAATGTTTAAAACGTATCAAAAATAAGTATTTATCGTGACTAGCACGAGGCATGTGCTTGCCCCAAAACTAGATGAGAATCTTCACATAATAATATATAAGCTGAGGTAAGGGGGTTGAAGGAAGAACCTGATAAGTAAGTCGATAGGAATTGCTAGAAATCAAAAGGCATGATGTTCAGAACTGAAGTTTCATTGATCGATTACAGTGGGACGATGATTCTCCTTATTGGTCCTGCATGTTATCCTCTTTGGGTTGTCCCTGTCAAGCATTCTTTTTTCTGTCTAAATATATCATATGTTTTTGTGTAAAAATTCCTTCGCTTTCTCCACTTGATTTATGTTTCAGTTGCTAATCTAATCATTTCCTTCTCCTGCACCCCCTTCTTTTAAGCATGTGATGCTTTATCCTGAAATTTCGAAGATTTCCATTTCCTGATAGTTCCTGGCTCCTTCTTAACCTCTTTCATAGCTCGTGTGCTTCTTGGTCCATACAGTGCAAGTGTGGAAACTTAATTGAATGCAGAGAGAGCAAGTATCATTGATGGCCAGGACGGACGGATAACAATGGCTAGTCTTTAGTAGCGTGGAATCATTTCACAGTCACAACAGATTTGTCCTGTTATTATATTACTAGCTCTTTTCTGTGGACAGATGTGAGAATGAAGGTTAATCTCGGAAGTAGGAAAGTGTTTTTAGATGGAACAACCATGAGAATGTCATCGACCATTCTGTCACATTTAATGGAGCTTGTTAAATGATAGCAAACACACATAGTTTTTTGTAAACTTAAGTATGCGACCAATGATTGCCATCAAAGCAAGACATATAGACTGTAGATTTGTGGGCAGGTCCCTCAGCTACTAAACTTAGGAGTTTAAATATGATCTTAGTTTAAATATGCTCAAAATCGTACTGCAAGGAAAACTTAAAGGACCATTTAAGTTAGAAGCTCGTTTTTGTAATTTCCTCTTGGCTACTTTCTTGTTCATACTAATTGTAACAAAATAGTTAAAGAACTCTGTTTGCGACTTCTGTTCCAGAGTGGAGGTATCTTCTGAAGATGTCTTTGGTACTTGAATTGATTTCAACTTTGCTTCAAACAGCCTTGAATTAGGAATGCTCATTTGGTTTAGCTGTTAGATTCAAGAGAATATGATTGGAAAGTAGCTAAACGGAGAAGAACTTAAAATTGGTTCATAACAAATTCGAGTCAGAGACAGCTGCAAATGTTCCAGTTTCCTTCCATTAAGTAATTAGATTTACCAAAGGTTTTCGTCAGCAATCTTCCATTTTTAAGTTGGTCCAAGACTGTTTCCGAAGTTTCATCATCACACAGTCAATGAGGACCCTAGTTGTACAAGAGTATTGTACTGACTGATTGAATTCGAGATTAGTTAAAGCTGTGGAAATGAAATAAATGTTTGCGGTGTTGGTTTTTATAAATGCAGCAGAGTGTACTGATTTCCTTGAATCTTATAGGGCACGTCTAACTCTTCCGTTATATAATATTATTTTCCTTTGCTATAAGTATCACTGGGAGTGAGGCTAACAAAAAGAACAGGATTTATAGCCAAGGTGTTGACAATTTTATGTAGGCATTGGTAACAAATACCTATAGAAAGAGGGAAAAAGTTGTATGTGATTGTTTACTGTCAGGAGTTCTCAGATCAACTTGAAATGTCCTATCATTTCTCTAATTAGCGAGTTGCAAATGATATTTTTATGGAGTCAGGGTGATGCACTTGAAGTTCGTTGTTCTGTGAACTTGTACTTTTTGAAGCTATTTGGTATTCATCTGCCATGTCTGCAGTACAGTTCCATTGATACTTTCTGGTTTACATCTCAGGAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAGGTGGAATTCGGATTGCTTCCGGAGTTTTATTGCAGGGTTCTTTTGCATAAATGTCAAGATTCCAATAACAACTTGACTTTTTCTTCTTCTATGTGCATGTTTGTAGGATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCGGTTAGTAAACTTGGAAGGACATTCCAAATTCATTGTGCTACTTGTCATTATTCTGTTAGATTTCCCTCAAGCACTTCCTTCAATACTCCTTTTTCATCCTCACGAATTGTTTCTCTCTGCAGGTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAGGTAACAAATACAGGAGACTGAAATCCTATTAACATATTGTGACAGCTATCTTTTCCTGCTTTCCCCTTTTCTCATGGATGTTATGGTGATCATAAACAGGTATTCCAGACAAAATATGCAAAAATTGGAGTTGGTAAGAAATATATATTTTTATAATTGTTCTTTGGGTTTCATTATGTTCTCTACCTTTGATGAGCATTTCGATGCATAGGAGTATGATAAAAGTTGTGCTGCTGTGGCAAAAGACCTTATATCTCCAAAAATTACTTAGACAGGCTTCACGTTGTAATTTTAAATTTTAGTAAAGCGGACAAAGATTCTCTTGTTGTAAAATACAGTGAAGACGGAAAATATACCTGTCATAGTATTGACTGTTATTAAATTCTGTCCAGCAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGATCACTGGAGGAGGGTGATGCAAGGACACGCTGGTGCTAATGTGGTAAGTTTCTTTTTCTTCTTCTCTTTCATTTTGACTTTTTTTGTTAAGAATGGTAAGTCAAAAAGAAAGTATATGCTGACATGAAAGGGATAGAGTAATGGGTTTCTTCTCCAGAAGTATAGGTCAATGGCTGTCATTTCTGTATCCCATTTGGATTATATTTTGTTTAATCTTACACATGCATATGGACATGTACCACTTTGTTATTAGCCAATTCTTAACAGCACTGTAGCATTTTCTGTGCACCATTCTCAAGATAGGTGTCTGCTAAGAAAATGATTCATTTTTATTAGGGCTATAACAATTTAGACGTTCCAGGTTTTGCCAAACTCAAATATTGGTGTTTTCATTTTACAAGACCAAAACAAGAATGTGACTTTTAAATTGCTGTTTTGGTTTGATTCACTTTTGTTCAGTCAGAATTTAAATAACCTTAAATTTATCGTGTCCAGGTACCTTTAGTGGCGTCAAACCGCATTGGAAAGGAGATAATTGAGACAGAGCATGGGAATAGTGAGATAACATTCTACGGCTACTCTTTCATAGCAGGTAAGCTTGATAGAAAGCTATAGGCTATAGCTTATAAATGAAAAACATCTTCTGCCTTGTGTTTTAAGTTGGCTGTGAACCTGGTTTAAAAATGAACAGGCCCCACTGGGGAGTTGGTTGCAGCTGCCGGTGATAAAGAGGAAGCTGTTCTTGTAGCTCAGTTTGATCTGGACAAAATCAAGTCCAAAA</genome_strand>
        <mrna_strand>TCACAGTGTAAAGCTTCAAAGAG-CCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTCTGCAGTTTGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCAGGGGCATCCAACCATTGTCAG..........................................................................................................GATGCAAAATCTTGCGAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCTG..........................................................................................................................GTTATCAGGAAAAGTTTTACTTCAATCCCGGTGACACTGGTTTTAAG...................................................................................................GTATTCCAGACTAAATATGCAAAAATTGGAGTTG...................................................................................................................................................................................................................................................................CAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGATCACTGGAGGAGGGTGATGCAAGGACACGCTGGTGCTAATGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTTAGTGGCATCAAACCGCATTGGAAAGGAGATAATTGAGACAGAGCATGGGAATAGTGAGATAACATTCTACGGCTACTCTTTCATAGCAG...................................................................................................GGCCCACTGGAGAGTTGGTAGCAGCTGCTGGTGATAAAGAGGAAGCTGTTCTTGTAGCACAGTTTGATATGGACAAAATCAAGTCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7323" ref_strand="+" ref_description="SGN-M7323 C2_At2g27450 [cosii_markers]">
      <seq>aagcttcaaagagcccaaaaatggcggagaagaatcgattagtcaccgttgctgctttgcagttcgcctgtaccgacgatgtctccaccaacgtcgctaccgccgagagattggttagagctgctcatcagaagggtgcaaatatcatcctcatacaggagttgttcgagggctattacttttgtcaagcacaaaaggaggagttctttcatcgagcaaaaccatatccgggccatccaaccattgttaggatgcagaatcttgcaaaggagcttggagtagttattccagttagtttctttgaagaggcaaataatgcgcattacaattctgtggctataattgatgctgatggcacagatcttggactttacaggaagtcccatattcctgatggacccggttatcaggaaaagtattacttcaatcccggtgacactggttttaaggtattccagacaaaatatgcaaaaattggagttgcaatttgctgggatcagtggtttcctgaggctgctcgagctatggcacttcaaggtgcagaagtattgttctaccctactgcaattggttctgaacctcaagatgatggacttgattctcgggatcactggaggagggtgatgcaaggacacgctggtgctaatgtggtacctttagtggcgtcaaaccgcattggaaaggagataattgagacagagcatgggaatagtgagataacattctacggctactctttcatagcaggccccactggggagttggttgcagctgccggtgataaagaggaagctgttcttgtagctcagtttgatctggacaaaatcaagtccaaaaggcatggttggggggtgtatcgtgatcgacgtcctgatttatataaggttcttttgacgctagatggcagcaacccagtcaagtgattcaagatgatctaagtactgcagattttcctgcctttttttttaaaaattataagaataaaaatatgaggactcaaatgagaaatttgtatttgagttttgttgtaatgtaactcgttaatttctgtaatctgctgcattctactttttatgtaaggcaaaatccgttgagtttgaaataaaaaaaaaaaaaaaagaaaactcgagactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="89690" stop="110498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89990" g_stop="90098" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90099" i_stop="91301" i_length="1203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.285" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91302" g_stop="91350" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="158" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91351" i_stop="94357" i_length="3007">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94358" g_stop="94449" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="250" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94450" i_stop="94555" i_length="106">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94556" g_stop="94707" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="402" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94708" i_stop="94829" i_length="122">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94830" g_stop="94876" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="449" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94877" i_stop="94975" i_length="99">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94976" g_stop="95009" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="483" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95010" i_stop="95268" i_length="259">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95269" g_stop="95435" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="650" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="95436" i_stop="95887" i_length="452">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="95888" g_stop="95984" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="747" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="95985" i_stop="96083" i_length="99">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="96084" g_stop="96441" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="748" r_stop="1105" r_length="358" r_score="0.980"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="96442" i_stop="97652" i_length="1211">
            <donor d_prob="0.378" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="97653" g_stop="97683" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1106" r_stop="1136" r_length="31" r_score="0.613"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-M7323" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1136</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89990" e_stop="90098"/>
          <exon e_start="91302" e_stop="91350"/>
          <exon e_start="94358" e_stop="94449"/>
          <exon e_start="94556" e_stop="94707"/>
          <exon e_start="94830" e_stop="94876"/>
          <exon e_start="94976" e_stop="95009"/>
          <exon e_start="95269" e_stop="95435"/>
          <exon e_start="95888" e_stop="95984"/>
          <exon e_start="96084" e_stop="96441"/>
          <exon e_start="97653" e_stop="97683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAGGTTTTTTTTTTTCGATTTCTTTTGTTGCACTTTTTGCGTTATTTGTGTTATGAATTTGAATTGAAATTCGATAGAACAGTAACTAAACTAGAATAGAGTCAATATATGAATTGAAACTAAAACTAAATAAATATAGCATAGATGAAGCTCTTGATCCCGATCTGAAATGAAAGAAGAAGAAGAAGACAGGATTAGAACTGCGTTGAAGAGGAGAGAAGAGGCAAGGAAGAAGTTGAGAATTGTTAGGATACCGGTTTTTTAATTTCTATTAGACTAGAAATAGGTTTATAAAATCCTATTTAGAATAGGAATAGGAATAGGAATAGGAATACAAATAGAATTAGGAATAGTAAATAGTATCCTACTTGGTAAAATGCAGACACAACAACAATTCATGATACGGTCACTCAACTGATAGTTATTATGTCACGAAGTCGCATTTTTAGATAATAAGTGATAGTTGGGTTTAAGTTTTTTCATTTCCAATAGAATTACAATTAATGACTATAGAATAAAGTTAGAAGACTTATGTTGTGTCCTCATATTTTATTCGTCGGTAGAGTTGTTTTATGTACTAAGAGGTTGATTTAATGTTATGAGTTTTTAGGCTTTCTTATAGCTCATTGAGAAAAGGGGGTTGGGATTTTGTGTTGTTGAGCATCTTCATAGTACCCAAAGATGTGACTTGTGGTGAATGAGAACCATGAGGTCTCGGGTATAAATTTGAGTGGAGGACAATTTATTAGGTGATTTCTTCCTATTTGTTCATGTTAAAGCCTTACTGGATGGATTTACCTAGTACCTAGTGAATGTAGCACTTATAGTGCAAATTAGTTGAGGTGTGTGCAAGTTGGTGACGACATCATGGTTATCGAGAAAAAAGTTATTGATCATCTATGTGTTGTTTAGATTTGTAACCATGAGGTCTCAGTTTTAAATTTGAGCGCAGGCAAAATTCCTAGGTGACTTTTTACTATTTATTCATGTTAAAGCCTTAGTGGACGGATTTACCTGGTACCTAGTGGAATGTAGCACTTATAGTGCAAATTATTTGAGGTGTGTGCAAGTTGGTAATGACACCATGATTATCCAGAAAAAAAAATGATTGATCATCTATTTGTTCTTTAGATTTGTAAAAGGGAATCAAGTTTGTCTTTTTGGTGGCATTTACATTTCTGGCTCTAAGATATTCCTTCGACGCAGATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAGGTAACAAACAGCCCAACTTTGGAATATCTAGCTACTACACAAAAGAACCATGGATGAAATACATTTTCTTTCTTTGGCGGAAGATAATTATTGATTAGGTTTACCTTTCTCAAGCAACAATATTCACTTCTCTCGGTGAGAACATTTCGTCAGCATTTTTATCCTTTGATCACATGCTGAAACTCTTATCTCTAGATTTTTGTTTGCCTTCGGGTTGTCTGATTGCCTCCTTTATGTGGTAGTCTATGCTGAGGCTGTTGTAAGTTATTTCAAAAGCTGAGTGGTCCGTAATGGATCGGAGAAGCGGAGACATTTGGTCTGTTTTATGCATTATTAGAATGTAACCAAAATGGAATCTAGTCATGTAAACATCATGTTATGACACTAGGAGTTGCTTGGCTAGTCGTCTATTTGAATTCCAGTTCTTAATCCAACTGTCCCTTAGGCTTGGGAGTAGATTTACTTCTGTCAGTATAATATAACTCTGAGCGAGTTAGGCTGAATTTCGGTAGGTCAAAACAAGCTTTGTTAATAAATGGTTGTGTCAATGACCCGCCCAAAAGTTACTTGGGCTGAAACAGGCTAAAAAGGGGGTCATAACCCAATCCATCCAATTTCTTTTTTATGACTATATACAGCATATCAAACAAAAAATGTCTTTTTAAAAATATTTTGTCCTGGTTTCTCATGGGTCACATTAGGCTACATGCCAGCCTTTTAGATGGTTTGAATTGGGTGGGATCAACATGGGCTAAATTTTCCACCCCCAACTCCAAGCAATTTTGGGTCTCCATTTACCAACTCAAACTCTGTTAAATGTGACAGAATAGTCATTAAGCTTTGTTATCTCAAACTGAAAGTATTTGTGTTTAACAGAGTGATAACTCTGCAATTCAAGTGTATAGAAAATTATATGTACAATTGAGTTTGTCAGTATCATTCCTAAGCTACAACTTTCCAAATAGTAAATTACTCCTAATTTTCTGCTAATAAAGGTTTTAATCAGTCCAATGAAACAGAAGCTAAATAATATGGGTTAGTGGAGAACTGTCTTTATTCAGGATATCGAGAACAGTGTAAAAATACCTAAACCCAAAAACATAGAAAGGGAGGAGATAATTAACAACTATACATTAGACCCTTATACTAATAGAATGAGAAAATGTTTAAAACGTATCAAAAATAAGTATTTATCGTGACTAGCACGAGGCATGTGCTTGCCCCAAAACTAGATGAGAATCTTCACATAATAATATATAAGCTGAGGTAAGGGGGTTGAAGGAAGAACCTGATAAGTAAGTCGATAGGAATTGCTAGAAATCAAAAGGCATGATGTTCAGAACTGAAGTTTCATTGATCGATTACAGTGGGACGATGATTCTCCTTATTGGTCCTGCATGTTATCCTCTTTGGGTTGTCCCTGTCAAGCATTCTTTTTTCTGTCTAAATATATCATATGTTTTTGTGTAAAAATTCCTTCGCTTTCTCCACTTGATTTATGTTTCAGTTGCTAATCTAATCATTTCCTTCTCCTGCACCCCCTTCTTTTAAGCATGTGATGCTTTATCCTGAAATTTCGAAGATTTCCATTTCCTGATAGTTCCTGGCTCCTTCTTAACCTCTTTCATAGCTCGTGTGCTTCTTGGTCCATACAGTGCAAGTGTGGAAACTTAATTGAATGCAGAGAGAGCAAGTATCATTGATGGCCAGGACGGACGGATAACAATGGCTAGTCTTTAGTAGCGTGGAATCATTTCACAGTCACAACAGATTTGTCCTGTTATTATATTACTAGCTCTTTTCTGTGGACAGATGTGAGAATGAAGGTTAATCTCGGAAGTAGGAAAGTGTTTTTAGATGGAACAACCATGAGAATGTCATCGACCATTCTGTCACATTTAATGGAGCTTGTTAAATGATAGCAAACACACATAGTTTTTTGTAAACTTAAGTATGCGACCAATGATTGCCATCAAAGCAAGACATATAGACTGTAGATTTGTGGGCAGGTCCCTCAGCTACTAAACTTAGGAGTTTAAATATGATCTTAGTTTAAATATGCTCAAAATCGTACTGCAAGGAAAACTTAAAGGACCATTTAAGTTAGAAGCTCGTTTTTGTAATTTCCTCTTGGCTACTTTCTTGTTCATACTAATTGTAACAAAATAGTTAAAGAACTCTGTTTGCGACTTCTGTTCCAGAGTGGAGGTATCTTCTGAAGATGTCTTTGGTACTTGAATTGATTTCAACTTTGCTTCAAACAGCCTTGAATTAGGAATGCTCATTTGGTTTAGCTGTTAGATTCAAGAGAATATGATTGGAAAGTAGCTAAACGGAGAAGAACTTAAAATTGGTTCATAACAAATTCGAGTCAGAGACAGCTGCAAATGTTCCAGTTTCCTTCCATTAAGTAATTAGATTTACCAAAGGTTTTCGTCAGCAATCTTCCATTTTTAAGTTGGTCCAAGACTGTTTCCGAAGTTTCATCATCACACAGTCAATGAGGACCCTAGTTGTACAAGAGTATTGTACTGACTGATTGAATTCGAGATTAGTTAAAGCTGTGGAAATGAAATAAATGTTTGCGGTGTTGGTTTTTATAAATGCAGCAGAGTGTACTGATTTCCTTGAATCTTATAGGGCACGTCTAACTCTTCCGTTATATAATATTATTTTCCTTTGCTATAAGTATCACTGGGAGTGAGGCTAACAAAAAGAACAGGATTTATAGCCAAGGTGTTGACAATTTTATGTAGGCATTGGTAACAAATACCTATAGAAAGAGGGAAAAAGTTGTATGTGATTGTTTACTGTCAGGAGTTCTCAGATCAACTTGAAATGTCCTATCATTTCTCTAATTAGCGAGTTGCAAATGATATTTTTATGGAGTCAGGGTGATGCACTTGAAGTTCGTTGTTCTGTGAACTTGTACTTTTTGAAGCTATTTGGTATTCATCTGCCATGTCTGCAGTACAGTTCCATTGATACTTTCTGGTTTACATCTCAGGAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAGGTGGAATTCGGATTGCTTCCGGAGTTTTATTGCAGGGTTCTTTTGCATAAATGTCAAGATTCCAATAACAACTTGACTTTTTCTTCTTCTATGTGCATGTTTGTAGGATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCGGTTAGTAAACTTGGAAGGACATTCCAAATTCATTGTGCTACTTGTCATTATTCTGTTAGATTTCCCTCAAGCACTTCCTTCAATACTCCTTTTTCATCCTCACGAATTGTTTCTCTCTGCAGGTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAGGTAACAAATACAGGAGACTGAAATCCTATTAACATATTGTGACAGCTATCTTTTCCTGCTTTCCCCTTTTCTCATGGATGTTATGGTGATCATAAACAGGTATTCCAGACAAAATATGCAAAAATTGGAGTTGGTAAGAAATATATATTTTTATAATTGTTCTTTGGGTTTCATTATGTTCTCTACCTTTGATGAGCATTTCGATGCATAGGAGTATGATAAAAGTTGTGCTGCTGTGGCAAAAGACCTTATATCTCCAAAAATTACTTAGACAGGCTTCACGTTGTAATTTTAAATTTTAGTAAAGCGGACAAAGATTCTCTTGTTGTAAAATACAGTGAAGACGGAAAATATACCTGTCATAGTATTGACTGTTATTAAATTCTGTCCAGCAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGATCACTGGAGGAGGGTGATGCAAGGACACGCTGGTGCTAATGTGGTAAGTTTCTTTTTCTTCTTCTCTTTCATTTTGACTTTTTTTGTTAAGAATGGTAAGTCAAAAAGAAAGTATATGCTGACATGAAAGGGATAGAGTAATGGGTTTCTTCTCCAGAAGTATAGGTCAATGGCTGTCATTTCTGTATCCCATTTGGATTATATTTTGTTTAATCTTACACATGCATATGGACATGTACCACTTTGTTATTAGCCAATTCTTAACAGCACTGTAGCATTTTCTGTGCACCATTCTCAAGATAGGTGTCTGCTAAGAAAATGATTCATTTTTATTAGGGCTATAACAATTTAGACGTTCCAGGTTTTGCCAAACTCAAATATTGGTGTTTTCATTTTACAAGACCAAAACAAGAATGTGACTTTTAAATTGCTGTTTTGGTTTGATTCACTTTTGTTCAGTCAGAATTTAAATAACCTTAAATTTATCGTGTCCAGGTACCTTTAGTGGCGTCAAACCGCATTGGAAAGGAGATAATTGAGACAGAGCATGGGAATAGTGAGATAACATTCTACGGCTACTCTTTCATAGCAGGTAAGCTTGATAGAAAGCTATAGGCTATAGCTTATAAATGAAAAACATCTTCTGCCTTGTGTTTTAAGTTGGCTGTGAACCTGGTTTAAAAATGAACAGGCCCCACTGGGGAGTTGGTTGCAGCTGCCGGTGATAAAGAGGAAGCTGTTCTTGTAGCTCAGTTTGATCTGGACAAAATCAAGTCCAAAAGGCATGGTTGGGGGGTGTATCGTGATCGACGTCCTGATTTATATAAGGTTCTTTTGACGCTAGATGGCAGCAACCCAGTCAAGTGATTCAAGATGATCTAAGTACTGCAGATTCTCCTGCCTTTTTTTTTAAAAATTATAAGAATAAAAATATGAGGACTCAAATGAGAAATTTGTATTTGAGTTTTGTTGTAATGTAACTCGTTAATTTCTGTAATCTGCTGCATTCTACTTTTTATGTAAGGCAAAATTTGTTGAGTTTGAATCCTGCAACGTTTCATCAGTGCATCAATGTGCAAGTTTGATGGTTTTTTGTCACATTCAACTAGCAGTAAGCATATTGATCCCACCTTAAAGAACCTTTTCCAGATATAAAGCTTGGGATGTCAGTTTCTCAATATATCTCTGAAAAACGCTGGAGCTGTATCTGGTGGTCCACAAATATCTATCATCCTATCACTTTCTTGATATTTAGAAAGGATAGTTGCATTTTCGGGTCTCTCAATCCTGTTCCAGATCCATTTGTCGCCAGAAGGTACGTTTTGATGTGCTTTACCACATATTTTATGCTTCTGCTGATATCGTGATGTTACCCCACAACGGTAGGGATAAGGTCTGCATACATCCTTACCCTCCCCAAACCCCACTTGGGACTTGTGGGATTACAATGGTTGTGTTGTTATACTAAGATAATGATGCTAGTTTTCTTTGCCTTTTATTCAGTTGTTTTTTTCCATTCTACTAAGTTAGAATTCCCCCTTAAGTCAATAAATTCATTTATCTTATCAGAAAAAAAAGTTTGGAACTATTTTTTGGGGAATAAATGATCCAATTGCTATAGCCACTCGGAAACACCTCTGGCCACAAATAATCTGCATAGTAACAAAGCATATAATTTGATGAAAGATTATTTCTGTGTAGGAGATTGTTTTTACTTTTCAGAGAACTTTAGATAATTTGTTGTGCCTTTGTCATAGCATATTGTTTAGATCATAAGATTCTCCATCAAGTGAATGAGAGCATCTCAATGAAAGCATCTATAATTTTAGAGCCTCTTACTAACCCTTTTGTCTGTAAAAGACCTGTTTCTCTGCCAAACAAATGTTTCTAGGAGCCATTGTAAGGTGTAACAGTTCCTCTTTGTGGGTTGCCCTTTTAGTGATGATTCTATTCCATCTGGTTTTGTTTTGTTTTTATTATATTTAAAAAAATTATGGACCCTGGCCTAACTCAAGCTAGTTCGAGAGGTGAAGACTGTCAAAAAACCATACAAAGAAACAAATGATCTTTACATGCCCAATAATGGACAATCTCTCTTCCCCCTCTTCCGTGGACATCTCTAGCATTGATAATATAAGAGCTCCCTTTCCCTACACACTCAAGGACTCCCCTGCCTGCTTGCCCGCCTCATAGGACCGGATAGTCTGGCCAATATAATACGGGAGCTCAACATTTGATAAATCATGAATGAGCTTAGCTTTGACTATAAGAAAATGGACCTCGAGCCTAAT</genome_strand>
        <mrna_strand>AAGCTTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAG..........................................................................................................GATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCG..........................................................................................................................GTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAG...................................................................................................GTATTCCAGACAAAATATGCAAAAATTGGAGTTG...................................................................................................................................................................................................................................................................CAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGATCACTGGAGGAGGGTGATGCAAGGACACGCTGGTGCTAATGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTTAGTGGCGTCAAACCGCATTGGAAAGGAGATAATTGAGACAGAGCATGGGAATAGTGAGATAACATTCTACGGCTACTCTTTCATAGCAG...................................................................................................GCCCCACTGGGGAGTTGGTTGCAGCTGCCGGTGATAAAGAGGAAGCTGTTCTTGTAGCTCAGTTTGATCTGGACAAAATCAAGTCCAAAAGGCATGGTTGGGGGGTGTATCGTGATCGACGTCCTGATTTATATAAGGTTCTTTTGACGCTAGATGGCAGCAACCCAGTCAAGTGATTCAAGATGATCTAAGTACTGCAGATTTTCCTGCCTTTTTTTTTAAAAATTATAAGAATAAAAATATGAGGACTCAAATGAGAAATTTGTATTTGAGTTTTGTTGTAATGTAACTCGTTAATTTCTGTAATCTGCTGCATTCTACTTTTTATGTAAGGCAAAATCCGTTGAGTTTGAAATAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAGAAAACTCGAGACTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1692" ref_strand="+" ref_description="SGN-M1692 T0979 [cos_markers]">
      <seq>ttcaaagagcccaaaaatggcggagaagaatcgattagtcaccgttgctgctttgcagttcgcctgtaccgacgatgtctccaccaacgtcgctaccgccgagagattggttagagctgctcatcagaagggtgcaaatatcatcctcatacaggagttgttcgagggctattacttttgtcaagcacaaaaggaggagttctttcatcgagcaaaaccatatccgggccatccaaccattgttaggatgcagaatcttgcacaggagcttggagtagttattccagttaggttctttgaagaggcaaataatgcgcattacaattctgtggctataattgatgctgatggcacagatcttggactttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="89694" stop="94979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89994" g_stop="90098" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90099" i_stop="91301" i_length="1203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.285" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91302" g_stop="91350" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="154" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91351" i_stop="94357" i_length="3007">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94358" g_stop="94449" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="246" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94450" i_stop="94555" i_length="106">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94556" g_stop="94679" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="370" r_length="124" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-M1692" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M1692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89994" e_stop="90098"/>
          <exon e_start="91302" e_stop="91350"/>
          <exon e_start="94358" e_stop="94449"/>
          <exon e_start="94556" e_stop="94679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAGGTTTTTTTTTTTCGATTTCTTTTGTTGCACTTTTTGCGTTATTTGTGTTATGAATTTGAATTGAAATTCGATAGAACAGTAACTAAACTAGAATAGAGTCAATATATGAATTGAAACTAAAACTAAATAAATATAGCATAGATGAAGCTCTTGATCCCGATCTGAAATGAAAGAAGAAGAAGAAGACAGGATTAGAACTGCGTTGAAGAGGAGAGAAGAGGCAAGGAAGAAGTTGAGAATTGTTAGGATACCGGTTTTTTAATTTCTATTAGACTAGAAATAGGTTTATAAAATCCTATTTAGAATAGGAATAGGAATAGGAATAGGAATACAAATAGAATTAGGAATAGTAAATAGTATCCTACTTGGTAAAATGCAGACACAACAACAATTCATGATACGGTCACTCAACTGATAGTTATTATGTCACGAAGTCGCATTTTTAGATAATAAGTGATAGTTGGGTTTAAGTTTTTTCATTTCCAATAGAATTACAATTAATGACTATAGAATAAAGTTAGAAGACTTATGTTGTGTCCTCATATTTTATTCGTCGGTAGAGTTGTTTTATGTACTAAGAGGTTGATTTAATGTTATGAGTTTTTAGGCTTTCTTATAGCTCATTGAGAAAAGGGGGTTGGGATTTTGTGTTGTTGAGCATCTTCATAGTACCCAAAGATGTGACTTGTGGTGAATGAGAACCATGAGGTCTCGGGTATAAATTTGAGTGGAGGACAATTTATTAGGTGATTTCTTCCTATTTGTTCATGTTAAAGCCTTACTGGATGGATTTACCTAGTACCTAGTGAATGTAGCACTTATAGTGCAAATTAGTTGAGGTGTGTGCAAGTTGGTGACGACATCATGGTTATCGAGAAAAAAGTTATTGATCATCTATGTGTTGTTTAGATTTGTAACCATGAGGTCTCAGTTTTAAATTTGAGCGCAGGCAAAATTCCTAGGTGACTTTTTACTATTTATTCATGTTAAAGCCTTAGTGGACGGATTTACCTGGTACCTAGTGGAATGTAGCACTTATAGTGCAAATTATTTGAGGTGTGTGCAAGTTGGTAATGACACCATGATTATCCAGAAAAAAAAATGATTGATCATCTATTTGTTCTTTAGATTTGTAAAAGGGAATCAAGTTTGTCTTTTTGGTGGCATTTACATTTCTGGCTCTAAGATATTCCTTCGACGCAGATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAGGTAACAAACAGCCCAACTTTGGAATATCTAGCTACTACACAAAAGAACCATGGATGAAATACATTTTCTTTCTTTGGCGGAAGATAATTATTGATTAGGTTTACCTTTCTCAAGCAACAATATTCACTTCTCTCGGTGAGAACATTTCGTCAGCATTTTTATCCTTTGATCACATGCTGAAACTCTTATCTCTAGATTTTTGTTTGCCTTCGGGTTGTCTGATTGCCTCCTTTATGTGGTAGTCTATGCTGAGGCTGTTGTAAGTTATTTCAAAAGCTGAGTGGTCCGTAATGGATCGGAGAAGCGGAGACATTTGGTCTGTTTTATGCATTATTAGAATGTAACCAAAATGGAATCTAGTCATGTAAACATCATGTTATGACACTAGGAGTTGCTTGGCTAGTCGTCTATTTGAATTCCAGTTCTTAATCCAACTGTCCCTTAGGCTTGGGAGTAGATTTACTTCTGTCAGTATAATATAACTCTGAGCGAGTTAGGCTGAATTTCGGTAGGTCAAAACAAGCTTTGTTAATAAATGGTTGTGTCAATGACCCGCCCAAAAGTTACTTGGGCTGAAACAGGCTAAAAAGGGGGTCATAACCCAATCCATCCAATTTCTTTTTTATGACTATATACAGCATATCAAACAAAAAATGTCTTTTTAAAAATATTTTGTCCTGGTTTCTCATGGGTCACATTAGGCTACATGCCAGCCTTTTAGATGGTTTGAATTGGGTGGGATCAACATGGGCTAAATTTTCCACCCCCAACTCCAAGCAATTTTGGGTCTCCATTTACCAACTCAAACTCTGTTAAATGTGACAGAATAGTCATTAAGCTTTGTTATCTCAAACTGAAAGTATTTGTGTTTAACAGAGTGATAACTCTGCAATTCAAGTGTATAGAAAATTATATGTACAATTGAGTTTGTCAGTATCATTCCTAAGCTACAACTTTCCAAATAGTAAATTACTCCTAATTTTCTGCTAATAAAGGTTTTAATCAGTCCAATGAAACAGAAGCTAAATAATATGGGTTAGTGGAGAACTGTCTTTATTCAGGATATCGAGAACAGTGTAAAAATACCTAAACCCAAAAACATAGAAAGGGAGGAGATAATTAACAACTATACATTAGACCCTTATACTAATAGAATGAGAAAATGTTTAAAACGTATCAAAAATAAGTATTTATCGTGACTAGCACGAGGCATGTGCTTGCCCCAAAACTAGATGAGAATCTTCACATAATAATATATAAGCTGAGGTAAGGGGGTTGAAGGAAGAACCTGATAAGTAAGTCGATAGGAATTGCTAGAAATCAAAAGGCATGATGTTCAGAACTGAAGTTTCATTGATCGATTACAGTGGGACGATGATTCTCCTTATTGGTCCTGCATGTTATCCTCTTTGGGTTGTCCCTGTCAAGCATTCTTTTTTCTGTCTAAATATATCATATGTTTTTGTGTAAAAATTCCTTCGCTTTCTCCACTTGATTTATGTTTCAGTTGCTAATCTAATCATTTCCTTCTCCTGCACCCCCTTCTTTTAAGCATGTGATGCTTTATCCTGAAATTTCGAAGATTTCCATTTCCTGATAGTTCCTGGCTCCTTCTTAACCTCTTTCATAGCTCGTGTGCTTCTTGGTCCATACAGTGCAAGTGTGGAAACTTAATTGAATGCAGAGAGAGCAAGTATCATTGATGGCCAGGACGGACGGATAACAATGGCTAGTCTTTAGTAGCGTGGAATCATTTCACAGTCACAACAGATTTGTCCTGTTATTATATTACTAGCTCTTTTCTGTGGACAGATGTGAGAATGAAGGTTAATCTCGGAAGTAGGAAAGTGTTTTTAGATGGAACAACCATGAGAATGTCATCGACCATTCTGTCACATTTAATGGAGCTTGTTAAATGATAGCAAACACACATAGTTTTTTGTAAACTTAAGTATGCGACCAATGATTGCCATCAAAGCAAGACATATAGACTGTAGATTTGTGGGCAGGTCCCTCAGCTACTAAACTTAGGAGTTTAAATATGATCTTAGTTTAAATATGCTCAAAATCGTACTGCAAGGAAAACTTAAAGGACCATTTAAGTTAGAAGCTCGTTTTTGTAATTTCCTCTTGGCTACTTTCTTGTTCATACTAATTGTAACAAAATAGTTAAAGAACTCTGTTTGCGACTTCTGTTCCAGAGTGGAGGTATCTTCTGAAGATGTCTTTGGTACTTGAATTGATTTCAACTTTGCTTCAAACAGCCTTGAATTAGGAATGCTCATTTGGTTTAGCTGTTAGATTCAAGAGAATATGATTGGAAAGTAGCTAAACGGAGAAGAACTTAAAATTGGTTCATAACAAATTCGAGTCAGAGACAGCTGCAAATGTTCCAGTTTCCTTCCATTAAGTAATTAGATTTACCAAAGGTTTTCGTCAGCAATCTTCCATTTTTAAGTTGGTCCAAGACTGTTTCCGAAGTTTCATCATCACACAGTCAATGAGGACCCTAGTTGTACAAGAGTATTGTACTGACTGATTGAATTCGAGATTAGTTAAAGCTGTGGAAATGAAATAAATGTTTGCGGTGTTGGTTTTTATAAATGCAGCAGAGTGTACTGATTTCCTTGAATCTTATAGGGCACGTCTAACTCTTCCGTTATATAATATTATTTTCCTTTGCTATAAGTATCACTGGGAGTGAGGCTAACAAAAAGAACAGGATTTATAGCCAAGGTGTTGACAATTTTATGTAGGCATTGGTAACAAATACCTATAGAAAGAGGGAAAAAGTTGTATGTGATTGTTTACTGTCAGGAGTTCTCAGATCAACTTGAAATGTCCTATCATTTCTCTAATTAGCGAGTTGCAAATGATATTTTTATGGAGTCAGGGTGATGCACTTGAAGTTCGTTGTTCTGTGAACTTGTACTTTTTGAAGCTATTTGGTATTCATCTGCCATGTCTGCAGTACAGTTCCATTGATACTTTCTGGTTTACATCTCAGGAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAGGTGGAATTCGGATTGCTTCCGGAGTTTTATTGCAGGGTTCTTTTGCATAAATGTCAAGATTCCAATAACAACTTGACTTTTTCTTCTTCTATGTGCATGTTTGTAGGATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTAC</genome_strand>
        <mrna_strand>TTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAG..........................................................................................................GATGCAGAATCTTGCACAGGAGCTTGGAGTAGTTATTCCAGTTAGGTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7327-3" ref_strand="+" ref_description="SGN-M7327-3 C2_At2g27730-3 [cosii_markers]">
      <seq>caaagcttcatttgcgatttacacaccgaaacaacagaggaatattttgagaagaaaattgagatggcagccaggaatgctttcagatatgtttctcgtaggctctctagcagtggcaaggtattaagtgaggaggaaaaagctgctgaaaatgtctacatcaagaaaatggagaaagagaagctggagaagcttgctcgccagggtcccaagccagaagaacaagctgcaggtggctcagggtcagtagctgatgctgcatcaagtgcccaggcctcttcaacatccagagtatcagatgacaaataccgcaactatggtgttctagctggactgatcactggtgttggtgctttgggttggtacttgctgtccaaggacaagaaggcagaagaagtacaggattgaagtatctcttaataagcaaactccttaaaagacaaaaaaataaataaagcaaactcctgtttcgaaaacagtaccctaatctcttttccttctgtatggttctccaccagctggatgtacaaaaatccccagaactagtgtacattttacaactgctgaactggatgacgttctatgtgtgttgcttcgttgacatgatcacatcattttagagaagaatttcctcggttcgttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="117379" stop="13846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117079" g_stop="117041" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117040" i_stop="113465" i_length="3576">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113464" g_stop="113340" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="165" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113339" i_stop="112831" i_length="509">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112830" g_stop="112792" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="204" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112791" i_stop="112095" i_length="697">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112094" g_stop="111689" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="613" r_length="409" r_score="0.919"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111688" i_stop="111314" i_length="375">
            <donor d_prob="0.456" d_score="0.94"/>
            <acceptor a_prob="0.490" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111313" g_stop="111299" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="629" r_length="16" r_score="0.533"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111298" i_stop="111038" i_length="261">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111037" g_stop="111003" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="663" r_length="34" r_score="0.629"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-M7327-3" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7327-3" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117079" e_stop="117041"/>
          <exon e_start="113464" e_stop="113340"/>
          <exon e_start="112830" e_stop="112792"/>
          <exon e_start="112094" e_stop="111689"/>
          <exon e_start="111313" e_stop="111299"/>
          <exon e_start="111037" e_stop="111003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCGTCATTTGTGATTCACACACCGAAACAACAGAGGTGAGAAAACTTCTCCTCTCTCTCTCTCTATTACTGTGCTTCTAATGCAATGTAAAATGGCTGTATGTTGGCGTATTGTTAGGGTTTCATTTTGATTGAGTTTCATCACGGTAGTTCGATTACTTGATGCGGTTGGCCGGTAGAGTTTTGACAGTTTTTCAGCTGTTTTTATGCCGTTTGAGGATTTGAATTTCTGTATATCATTATATGCTGATTTGTTCATCCAGATGAGCATAAACAGTGTTAATTTTTGAATATTGAAGTGTAAGGATAATGGAATGCTAGGTAATTTGTCAGTTTTGACATTCGTGAGCTGCTTCCATGCCTTTGAAGATTTCATTTATGTAAAATCCTTCATATATTATTGATTTTATGCGTATTAGTTCGTCCAGATGAGCATTAAACAGTGTGAATTCTTGAATATTGAAGTGTAAGGATAATAGAATGCTAGGTTATTTGTCAGTTTGACATTTGTGAGCTGCTTCCATGCCTTTGAAGATTTCATTTATGTAAATCCTTCATATATTATTGATTTTTTGCTTATTAGTTCCATCCAGATGAACACCAAACAGTGTTCTAGGATTTTTGCGGTTTGACTATTCGTGAGCTGATAGTATGCTCTTATTTGTTCGTCCAGATTAGCATTAAACATTGTGAATATTTTGGTTTTTTAAGTCCAAGGATAATAGAATGCTAGGTAATTTGTCAGTTTGACATTCGTGAGCTACTTCCATGCCTTTGAAGATTTCATTTATGTAAATCCTTCGTATATTATTGATTTTATGCTTATTAGTTCGTCCAGATGAGCATTAAACAGTGTGAATTCTTGAATATTGAAGTGTAAGGATAATAGAATGCTAGGTTATTTGTCAGTTTGACATTTTGAGCTGCTTCCATGCCTTTGAAGATTTCATTTATGTAAATCCTTCATATATCATTTATTTTATGCTTATTAGTCTGTCCAGATGAGCATTAAACCGTGCAAAAATGTTGAATGCAAGGATTTGTCAGTTTGACTATTCGTGAGCTGATTAAATGCTTTTATTAGTTCTTCCAGATGAGCATTAGACAGTGTAAATATTTTGAATTTTTAAGTGCAAGGATAATAGGATGTTAGGTATTTTTTCAGTTTGACATTCGTGAGCTGCTTCAATGCCTTTGAAGATTTCATTTATGTAAATCCCTCATATATCATTGATTATATGCTTATTAGTTCGTCCAAATGAGCTTAAACAGTTTAAATTTTTTTGAATGCAAGGATTTTGTCGTTTTGAATACATGAGCTGATAGTATACTCTTATTTGTTCTTCCAGCTGAGCATTAAACAGAGTGAATATTTTGATTTTTTAAGTGCAAGGATAATAGAATGCTAGGTATTTTGTGAGTTTGTGCCTTTGAAGATTTCATTTATGCAAATCCCTCATATATCGTTGATTATATGCTTATTAGTTCTTCAGGATTAGCATTAAACAGTATAAATTTTGGAAGTTTTGAGTGCAAGGATTTGTTGGTTTGACTATCGTGAGCTGATTAAATGCTTTTATTAGTTCTTCCAGATGAGCACTAAACAGTGTAAATATTTTGAGTTTTTAATTCCAAGGATAATAGAATGCTAGGTAATTTGTGAGCTGCTCCTATGCTGTCTGTACTCTGAAGATTCCATTTCTGTAAATCCTTCAGATATGGTTGATTATATGCTTATTAGTTCTTCTAGATGAGTATTAAACAATGTTAATTTTTTGGAAGTTTTAGAGTGCAAGAATTTTTCGGTTTGACTTTCAGTGAGCTGATTATATGCTTTTTAGTTCTTTTAGATGAGCATTAAACAGTGTAAATATTTTGAGTTTTAACTGCAAGGATAATAGAATGCTAGGTATTTGTCGGTTTGACAATATTCGAGCTGCTTCTATGCCGTTTGAAGATTTCATTTATATAATCCTTTAGATATTATTGACTTTATTTCTTAATGTTTATACACTCATTACTTCTTCCAGATTAGGCATCACAGAGTGTAAATTTTTTGAGTTGTTAAAGTGAAAGGATAATAGAATGCTCGGTATTTGTTGTCTTGAAGATTTCATTTCTGTAAATCCTTCAGATATCATTGAGTTTTTAAGTGCAAGGATAATAGAATACTTATTGGTTATTCCAAAATTGTTAGATACATTCTGTGTTACTATAGCTGCATGAAACAGTTAATATTTGGAACTTTATAAGTGCAAGGGTAATAGGATGTTAGTTATTTGTCAGTGTGACAAATTCTGAGCTGTTTTTATGGCGTATGAAACTATGAATCAGATATTGCGTTTTTTTCTCTGTTTATATGGTTAGATACATACTCTGTTACTATAGGTGCATAATTTTCTGTAAGTTTTATGTGCAAGGGTAATGGAATGATAGTATTCCGATATTTGTCAGTTTTAGATGGTTATTTTGCTGATAACAATAATTATTGTCAGTGTGATACAATTTGGGATCTCCTTTGCACAATTTGAGTAAGTATATGTCAAATACTGATGACTACTATGCTGTGTGAAGATTTTCTTTCTGGAAACCCTTCGATATTGCATTGATTATTTCTGTTTGCATGCTTATTGGTTCTTCCAGATGGTTAGATTCACCCTATCTCATTATAGCTTCATAAAACAGTCTGAAATTTTGAAAGGTTTTTAGTGCAATGAAAGAGAACGCTTGGTGTTTGTTGGTTTGACAATTTCTGAGATATCCCTATGCTGTATAAATCAAATATTGCATTGATATTTTCTAAATTTATGCTCGTTGGTTAGTTCTTCCAGATGGTCAGATTCGTACAATGTTATTATAGCTTCATAAAGCAGTGTAATTTCTTGGAGTTAATAAGTGCAAAGATAATAGTAATGCCAGATATTTGTCAGTTTGACAATTCATGAGCTGTTTCTATGCTGTATGAATCTGCATTGTTTTTTTTTTTCCGTTTATATGCTTATTGTTTCTCCTGCTGGTTAGATACATGCTATGTTATTATAAGTGCACAAAACAATGTAATTCTTTTGGAGGTTTCTATGTGTAAGTATTTGTCAGTTTCAGTCGTTTGTGGTTTTGATGATTACAGTATTATCGTCAGTGTGGTAACAAGTGTGTTCTCCTTTGCACATTTGACCATCTGGAATGGAATTAGTATATGTTAAATATGTGTTGAATACTATGGTCGTTTGTGTTGTTAAAATAGATTTTTGAAACAGGATTTGTACTAGCTGTTGTGTAGGAATGGGTGTCTGACATTCTGTTTTTGTTCTGACAAGGCTATATGAAAGAACATGCAATTTCCCTGTGATAGGGCTACATCCTGTAGGTCCATCTCTCTGTGTGTCATCAATTCTGTATGAATAGATAGGGAATTAGCATTATCTCAGTTATTTGGCTGCGCATTTATTTCTCTGGCTTAGCTGTAATATAAATTTGATTTTCTCAAGTGACTGGTTGATAATTGCAGAAATTTTGACTGGAATTAACCCTAATTGGATGTACACGGTTTCTAGATCTTCAAATGCATTAATATCCATTTGATTTGAATGTAGCTTGATTTGTTAATGACAGGAATA-TTTGAGAAGAAATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAGGTAACTCTTTAGTTGTGATCTGCAACTTACCTGTCTTGTGTAGTTACTGCAACAATATTCGTTTCATTTTGGTAGTCCCAGAAAATTATTTTGCATTACGTTAGTGTATTATCTCTTTTTAGCAAAATGGATCCTGGTTTTGCTTCTTTTTTCTTTTTTTATGACAAGGAAACCCACAGCCACTGCTCTTTGGGTGTGCACAGGGTAAAACCACCGGATCCTGGTTTTGCTTTCTTTTTGATGTTCCATTTTTCTCATGATCTCATTTTGCTCACTTGGCATTTGCATGTAGTATGTATACCTTCTTTCTTGAGGGTCCTGGGGCAATTCTATTATAGTAAAAATTGGGTATTCTTTTATGATTATTTTGCGCTTTTGCTGTTTTTGGGATCATAAGTTGTAAGTTTAAGTGGACACTTAGTTCTGATTTCTGAAGTGTTCAGTCATGAGATATATTGCGTCAAGTCTGCTTTCTAGCTTATCTAAATGTTAAATTTTTCACTTTACAGAAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAGGTATGGGAATTTTCAATATATATATATATATAGCGGGTTAAGACTGGGGCTTACTGAAAATTAATTGGCGTTTTTGCTGCTCCCATTTTGTATATCATAAAGGAAGTCTACTGAGTCAGTAATAAGTTGCCATGTGAGAATAGATTGTTGCTTGTCATACTCTCCTCCCTACCATTTTATGTGTTGATATGAGATACCCTTCAACAGTTATTGCCTCTTTGTCTTTAAGGGTGTCGCCATCTCTTTCAGATAGGTTGGGGATTCTCGTAATAGCTTGGAGAGGTTACTGACTGCTTATGTGCATTGAACCCATCATTACAAGATTCTCTTGAAATTATCCAGTTTGGAACTGGGTCAAAACTCTTGACATGTTCAAAATTCTTATGAGCATTGAACTGACTCTAGTTGAAACAGAAGTGGGCTCATCACCTTCAGAAATTTAACTTAAATGAGGCTGGATAATGAAATAAAACACTCAATTCAGCAACCAAGATATAACTCTAAAGTTGATTTTTCGTTAGTTAAATGGTTTTCGATATTAAACCAGGTCAAGCGTTAAAAAGTTCTTAGCTTAATGCACTTCACAGTTAAAAAAAAAAAAAACTGCCTGGGCTATTTGTTGTGTCTCTTGAATTTTCTCCGCTTGAGTGCCTTTTGACCCCTTGAAATTTCTGCTGTTGTGATTAATATTCCTCAGGGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGAC---CAAA-AAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGACATGATCACCTCGTATTACTCGGTTCGTTTGTTACCTCTATCATATATTCCCCCCTTTACCTGTTTATACCATGGAAATAATGCAGTACATCTCGACCTATCGCGATAGTAGTAGTTTCTTTTTACTGTCATCTGCTTCCATCCATGGTCAGTGTGATCTGATCTAGTACTAGACTTCCGTTGTATCTGTTCTTGTTTTCACCTCTTTTTTGAGTTGACACCATTATTATGAGAGCTTACGCTACACCTTAAGACTATTCGGAGTGAATCGGTCTCTAAGGTACACGAAGTTGAATCAGTCGTTAAACAGAGATCTATCTACCTTATCTTTGTGCAGATCTTTGTTTTTATTTAATATGTTTTTTGATTGTTGTCATATTCCTATAGATTTT-GATTAGTCTGATATCTTTTTGAGCATTAGTGCATAATATAATCCCTTTTTGCAACTTACATGGACATAATATAAAGCATAGTGTTAGACTTTGTCAGACAACTCAACTTCTCTAAACACATATTTTACAAGGGCATCGTCTGCACGTCTGCAATTTTGCATTACTTATTTGTTGGTCTGATTTTATGATAAAAAATAATAATAATTAGGCATATGCTACAAGCAGAACATTATAATAAAAGCAAATGGAATTTATTTATTTCCCTTCAAAGTAATAGGGGTCTTTACAGAAAAGAAATTACAAAAT</genome_strand>
        <mrna_strand>CAAAGCTTCATTTGCGATTTACACACCGAAACAACAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATTTTGAGAAGAAAATTGAGATGGCAGCCAGGAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCAAGCCAGAAGAACAAGCTGCAGGTGGCTCAGGGTCAGTAGCTGATGCTGCATCAAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACTTGCTGTCCAAGGACAAGAAGGCAGAAGAAGTACAGGATTGAAGTATCTCTTAATAAGCAAACTCCTTAAAAGACAAAAAAATAAATAAAGCAAACTCCTGTTTCGAAAACAGTACCCTAATCTCTTTTCCTTCTGTATGGTTCTCCACCAGCTGGATGTACAAAAATCCCCAGAACT-AGTGTACATTTTACAACTGCTGAACTGGATGACGTTCTATGTGTGTTGCTTCGTTGACATGATCACATC.......................................................................................................................................................................................................................................................................................................................................................................................ATTTTAGAGAAGAATT.....................................................................................................................................................................................................................................................................TCCT-CGGTTCGTTAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7327-2" ref_strand="+" ref_description="SGN-M7327-2 C2_At2g27730-2 [cosii_markers]">
      <seq>caaagcgtcatttgtgattcacacaccgaaacaacagaggaatatttgagaagaaatttgagatggcagccagaaatgctttcagatatgtttctcgtaggctctctagcagtggcaaggtattaagtgaggaggaaaaagctgctgaaaatgtctacatcaagaaaatggagaaagagaagctggagaagcttgctcgccagggtcccaagccaggagaacaagctgcaggtggctcagggtcagtacctgatgctgcatcgagtgcccaggcctcttcaacatccagagtatcagatgacaaataccgcaactatggtgttctagctggactgatcactggtgttggtgctttgggttggtacctaatgtcaaaggacaagaagacggaagaagtacaggattgaagtatctccttattagcgaactccttaaaagaccaaaaaataaagcaaactcgtgtttcgtaaacagtatcctaatctcttttccttctgtatggttttccaccagctggatgtacaaaaatctccagaactgggcgtacattttacaactgctgaactggatgacgttctatatgtgttgcttctttgacatgatcacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="117379" stop="111390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117079" g_stop="117041" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117040" i_stop="113465" i_length="3576">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113464" g_stop="113340" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="164" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113339" i_stop="112831" i_length="509">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112830" g_stop="112792" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="203" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112791" i_stop="112095" i_length="697">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112094" g_stop="111690" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="608" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-M7327-2" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7327-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117079" e_stop="117041"/>
          <exon e_start="113464" e_stop="113340"/>
          <exon e_start="112830" e_stop="112792"/>
          <exon e_start="112094" e_stop="111690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCGTCATTTGTGATTCACACACCGAAACAACAGAGGTGAGAAAACTTCTCCTCTCTCTCTCTCTATTACTGTGCTTCTAATGCAATGTAAAATGGCTGTATGTTGGCGTATTGTTAGGGTTTCATTTTGATTGAGTTTCATCACGGTAGTTCGATTACTTGATGCGGTTGGCCGGTAGAGTTTTGACAGTTTTTCAGCTGTTTTTATGCCGTTTGAGGATTTGAATTTCTGTATATCATTATATGCTGATTTGTTCATCCAGATGAGCATAAACAGTGTTAATTTTTGAATATTGAAGTGTAAGGATAATGGAATGCTAGGTAATTTGTCAGTTTTGACATTCGTGAGCTGCTTCCATGCCTTTGAAGATTTCATTTATGTAAAATCCTTCATATATTATTGATTTTATGCGTATTAGTTCGTCCAGATGAGCATTAAACAGTGTGAATTCTTGAATATTGAAGTGTAAGGATAATAGAATGCTAGGTTATTTGTCAGTTTGACATTTGTGAGCTGCTTCCATGCCTTTGAAGATTTCATTTATGTAAATCCTTCATATATTATTGATTTTTTGCTTATTAGTTCCATCCAGATGAACACCAAACAGTGTTCTAGGATTTTTGCGGTTTGACTATTCGTGAGCTGATAGTATGCTCTTATTTGTTCGTCCAGATTAGCATTAAACATTGTGAATATTTTGGTTTTTTAAGTCCAAGGATAATAGAATGCTAGGTAATTTGTCAGTTTGACATTCGTGAGCTACTTCCATGCCTTTGAAGATTTCATTTATGTAAATCCTTCGTATATTATTGATTTTATGCTTATTAGTTCGTCCAGATGAGCATTAAACAGTGTGAATTCTTGAATATTGAAGTGTAAGGATAATAGAATGCTAGGTTATTTGTCAGTTTGACATTTTGAGCTGCTTCCATGCCTTTGAAGATTTCATTTATGTAAATCCTTCATATATCATTTATTTTATGCTTATTAGTCTGTCCAGATGAGCATTAAACCGTGCAAAAATGTTGAATGCAAGGATTTGTCAGTTTGACTATTCGTGAGCTGATTAAATGCTTTTATTAGTTCTTCCAGATGAGCATTAGACAGTGTAAATATTTTGAATTTTTAAGTGCAAGGATAATAGGATGTTAGGTATTTTTTCAGTTTGACATTCGTGAGCTGCTTCAATGCCTTTGAAGATTTCATTTATGTAAATCCCTCATATATCATTGATTATATGCTTATTAGTTCGTCCAAATGAGCTTAAACAGTTTAAATTTTTTTGAATGCAAGGATTTTGTCGTTTTGAATACATGAGCTGATAGTATACTCTTATTTGTTCTTCCAGCTGAGCATTAAACAGAGTGAATATTTTGATTTTTTAAGTGCAAGGATAATAGAATGCTAGGTATTTTGTGAGTTTGTGCCTTTGAAGATTTCATTTATGCAAATCCCTCATATATCGTTGATTATATGCTTATTAGTTCTTCAGGATTAGCATTAAACAGTATAAATTTTGGAAGTTTTGAGTGCAAGGATTTGTTGGTTTGACTATCGTGAGCTGATTAAATGCTTTTATTAGTTCTTCCAGATGAGCACTAAACAGTGTAAATATTTTGAGTTTTTAATTCCAAGGATAATAGAATGCTAGGTAATTTGTGAGCTGCTCCTATGCTGTCTGTACTCTGAAGATTCCATTTCTGTAAATCCTTCAGATATGGTTGATTATATGCTTATTAGTTCTTCTAGATGAGTATTAAACAATGTTAATTTTTTGGAAGTTTTAGAGTGCAAGAATTTTTCGGTTTGACTTTCAGTGAGCTGATTATATGCTTTTTAGTTCTTTTAGATGAGCATTAAACAGTGTAAATATTTTGAGTTTTAACTGCAAGGATAATAGAATGCTAGGTATTTGTCGGTTTGACAATATTCGAGCTGCTTCTATGCCGTTTGAAGATTTCATTTATATAATCCTTTAGATATTATTGACTTTATTTCTTAATGTTTATACACTCATTACTTCTTCCAGATTAGGCATCACAGAGTGTAAATTTTTTGAGTTGTTAAAGTGAAAGGATAATAGAATGCTCGGTATTTGTTGTCTTGAAGATTTCATTTCTGTAAATCCTTCAGATATCATTGAGTTTTTAAGTGCAAGGATAATAGAATACTTATTGGTTATTCCAAAATTGTTAGATACATTCTGTGTTACTATAGCTGCATGAAACAGTTAATATTTGGAACTTTATAAGTGCAAGGGTAATAGGATGTTAGTTATTTGTCAGTGTGACAAATTCTGAGCTGTTTTTATGGCGTATGAAACTATGAATCAGATATTGCGTTTTTTTCTCTGTTTATATGGTTAGATACATACTCTGTTACTATAGGTGCATAATTTTCTGTAAGTTTTATGTGCAAGGGTAATGGAATGATAGTATTCCGATATTTGTCAGTTTTAGATGGTTATTTTGCTGATAACAATAATTATTGTCAGTGTGATACAATTTGGGATCTCCTTTGCACAATTTGAGTAAGTATATGTCAAATACTGATGACTACTATGCTGTGTGAAGATTTTCTTTCTGGAAACCCTTCGATATTGCATTGATTATTTCTGTTTGCATGCTTATTGGTTCTTCCAGATGGTTAGATTCACCCTATCTCATTATAGCTTCATAAAACAGTCTGAAATTTTGAAAGGTTTTTAGTGCAATGAAAGAGAACGCTTGGTGTTTGTTGGTTTGACAATTTCTGAGATATCCCTATGCTGTATAAATCAAATATTGCATTGATATTTTCTAAATTTATGCTCGTTGGTTAGTTCTTCCAGATGGTCAGATTCGTACAATGTTATTATAGCTTCATAAAGCAGTGTAATTTCTTGGAGTTAATAAGTGCAAAGATAATAGTAATGCCAGATATTTGTCAGTTTGACAATTCATGAGCTGTTTCTATGCTGTATGAATCTGCATTGTTTTTTTTTTTCCGTTTATATGCTTATTGTTTCTCCTGCTGGTTAGATACATGCTATGTTATTATAAGTGCACAAAACAATGTAATTCTTTTGGAGGTTTCTATGTGTAAGTATTTGTCAGTTTCAGTCGTTTGTGGTTTTGATGATTACAGTATTATCGTCAGTGTGGTAACAAGTGTGTTCTCCTTTGCACATTTGACCATCTGGAATGGAATTAGTATATGTTAAATATGTGTTGAATACTATGGTCGTTTGTGTTGTTAAAATAGATTTTTGAAACAGGATTTGTACTAGCTGTTGTGTAGGAATGGGTGTCTGACATTCTGTTTTTGTTCTGACAAGGCTATATGAAAGAACATGCAATTTCCCTGTGATAGGGCTACATCCTGTAGGTCCATCTCTCTGTGTGTCATCAATTCTGTATGAATAGATAGGGAATTAGCATTATCTCAGTTATTTGGCTGCGCATTTATTTCTCTGGCTTAGCTGTAATATAAATTTGATTTTCTCAAGTGACTGGTTGATAATTGCAGAAATTTTGACTGGAATTAACCCTAATTGGATGTACACGGTTTCTAGATCTTCAAATGCATTAATATCCATTTGATTTGAATGTAGCTTGATTTGTTAATGACAGGAATATTTGAGAAGAAATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAGGTAACTCTTTAGTTGTGATCTGCAACTTACCTGTCTTGTGTAGTTACTGCAACAATATTCGTTTCATTTTGGTAGTCCCAGAAAATTATTTTGCATTACGTTAGTGTATTATCTCTTTTTAGCAAAATGGATCCTGGTTTTGCTTCTTTTTTCTTTTTTTATGACAAGGAAACCCACAGCCACTGCTCTTTGGGTGTGCACAGGGTAAAACCACCGGATCCTGGTTTTGCTTTCTTTTTGATGTTCCATTTTTCTCATGATCTCATTTTGCTCACTTGGCATTTGCATGTAGTATGTATACCTTCTTTCTTGAGGGTCCTGGGGCAATTCTATTATAGTAAAAATTGGGTATTCTTTTATGATTATTTTGCGCTTTTGCTGTTTTTGGGATCATAAGTTGTAAGTTTAAGTGGACACTTAGTTCTGATTTCTGAAGTGTTCAGTCATGAGATATATTGCGTCAAGTCTGCTTTCTAGCTTATCTAAATGTTAAATTTTTCACTTTACAGAAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAGGTATGGGAATTTTCAATATATATATATATATAGCGGGTTAAGACTGGGGCTTACTGAAAATTAATTGGCGTTTTTGCTGCTCCCATTTTGTATATCATAAAGGAAGTCTACTGAGTCAGTAATAAGTTGCCATGTGAGAATAGATTGTTGCTTGTCATACTCTCCTCCCTACCATTTTATGTGTTGATATGAGATACCCTTCAACAGTTATTGCCTCTTTGTCTTTAAGGGTGTCGCCATCTCTTTCAGATAGGTTGGGGATTCTCGTAATAGCTTGGAGAGGTTACTGACTGCTTATGTGCATTGAACCCATCATTACAAGATTCTCTTGAAATTATCCAGTTTGGAACTGGGTCAAAACTCTTGACATGTTCAAAATTCTTATGAGCATTGAACTGACTCTAGTTGAAACAGAAGTGGGCTCATCACCTTCAGAAATTTAACTTAAATGAGGCTGGATAATGAAATAAAACACTCAATTCAGCAACCAAGATATAACTCTAAAGTTGATTTTTCGTTAGTTAAATGGTTTTCGATATTAAACCAGGTCAAGCGTTAAAAAGTTCTTAGCTTAATGCACTTCACAGTTAAAAAAAAAAAAAACTGCCTGGGCTATTTGTTGTGTCTCTTGAATTTTCTCCGCTTGAGTGCCTTTTGACCCCTTGAAATTTCTGCTGTTGTGATTAATATTCCTCAGGGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGACATGATCACCT</genome_strand>
        <mrna_strand>CAAAGCGTCATTTGTGATTCACACACCGAAACAACAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATTTGAGAAGAAATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGACATGATCACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7324" ref_strand="+" ref_description="SGN-M7324 C2_At2g27470 [cosii_markers]">
      <seq>gaaaaatggcggagatagagaagcagaacaaggagaaggagaaagtagtagcagaaacaacagtgcaaatcgatcaagagggtcttcccaagactattgtacgtaggcttgtgaaggaaaagctttctcagctatctacagatactgatatctcacttcttcgtgactcgcttcttgctttctctgaaagtgctcgaattttcatccattacctctccgcaactgctaatgacatatgcaaggagtctaagaggcaaacgataaatgcagaagatgtgttcaaggcccttgaagagattgagtttccagagctcattgagcctctcaaagcttctcttgagggattcagagagaagaactctaaaaggaagtcaacgtcatctaagtccccagaatctaacaaaaaggccaagctgaaagagcctgtggaaaatgggaagggtaagatgaaagaacaaccctcggataacgaaaatgaagatgcacaagctgaagaggaagtcaatgaagttgaggatagagttgatgattaacgagattattgtttgcgcttgccttcttcgttagacattttactcgtgccttgttaacccccccagaaaaatgtaatcttatcttggatgcaaagttaacaaacagtttgtagagctttattctggagtaaaatgaagttctttgggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="135710" stop="132038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135410" g_stop="135188" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135187" i_stop="134128" i_length="1060">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134127" g_stop="134009" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="342" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134008" i_stop="132678" i_length="1331">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132677" g_stop="132335" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="685" r_length="343" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-M7324" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135410" e_stop="135188"/>
          <exon e_start="134127" e_stop="134009"/>
          <exon e_start="132677" e_stop="132335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATGGCGGAGATAGAGAAGCAGAACAAGGAGAAGGAGAAAGTAGTAGCAGAAACAACAGTGCAAATCGATCAAGAGGGTCTTCCCAAGACTATTGTACGTAGGCTTGTGAAGGAAAAGCTTTCTCAGCTATCTACAGATACTGATATCTCACTTCTTCGTGACTCGCTTCTTGCTTTCTCTGAAAGTGCTCGAATTTTCATCCATTACCTCTCCGCAACGTAAGGTTTAATGGGTTTTGCAGATTAGTTTCAATTGTTTCTTATTTTTGATAAATTTCAGTTAATTCATGGAAAATGATAAAAAGGCTTGGAGATTATAGGTGTTGTTTCGATTTTTTTTGATCCGGAATTCAAATGGGGTTTTGTTAAATTTTTGTTCTTTTACTGATTATTTATGGATTCAGTCTTAAAAAATTGAAATTTAGGATTGTTTGTTTTGTTGCTAAAAGGTAATAGGGAAATTTCTTAATTTTTGTGATCTGGGATGTGTATTGGGTATTCTTTAATTGATGATGACGAAACCTGCTGCGGCTACCCTTTGGGTGTGCACAGTGTAAACCTCACTTTGCTCCGGTGCAATAGACGTGAGAGGTAAATTGCACTAGGGAAATCATATGTGATGAGGTTAAAGCAGAAGTTTAACCCCTTGTTGTATTAGGTATTACATTTTAGTTAATCAGCTCACATGCATCAATTTTTGAGCGATTAGGTCGGATTAACCCTAAGAGGTAGAATTGTCTTGTTTCTTAAAAGAAGATTTGGTGCTTTTGAATTCCTGTGAGTTTAAAGGATTTTGATTTAAAATGTCATCCTTTTGCTGATCTACGGTGAAGTTATTGAGTATTTTTAGGAACTGATATAAAGCTGAAAATTAGGATTGTGTTGATAGTGATATTGGCGTGTTGTTGAAAGAACTTTGGGAACTCTGTGAAACTGTGTAATCTAGGATTTAAGGGGTTCTGTGTATTAGCTATTTCTTTTACTGATTGATATCTAAGTTTTAGTTGATTAGTAGGATGAACACTAAAAGGTGGGGATTTGTGAAAAAGAAGTGATATATTGTGATTCTAAGCTAGTGCTGGAGTGTGAATGAGGTTATTTATTGGTTGATGTAAAACATGATAAGGCTGCTTTGTGTTGACAGTTGAGGAAATGAAGAACAGGTTGGATTAGATATCAGTGATGATACAGAAAGATGGAAAAATAATTATGTTTTCATGTTTCTCTTTTGTGATATTTCGCTTCAATGAGTGATCTCATTTGCAATGTGCAATTGCAGTGCTAATGACATATGCAAGGAGTCTAAGAGGCAAACGATAAATGCAGAAGATGTGTTCAAGGCCCTTGAAGAGATTGAGTTTCCAGAGCTCATTGAGCCTCTCAAAGCTTCTCTTGAGGGTCAGTTGCTTTTCATTGTTCTAAATTTTTTCGACAATCTGTATTTTTCTTGTCATGAAGCTGAACGCTTTCCATCTTAGGCTACATACTCTTATCCACTGAATGTTGCATACAATCACAGGTCAACATTTACTTTATACATATGTTGATCAAAGGAGAAATAAAAGTCGGTAATAAGCCAAATATACCCATGGTGTTGTGTTAGGGCATAGAGCTTCAAAGAATTGAATAGTTAGTGAGGATTATGGTCAGAGATCTTCCAAGCTGTATCAGAGTAGCATGTGTGTCAATCCACCAGGTCTAAAGCCAATGTTGTTTATTTAATATGGTAAAAGTTCTATTCATAAGGTACTAAGGTACCCAGAAGGCACACAAAAGTATGACAACAACATAGCCCCCTACATTCTACAATAGAATCAAGCTACATAATTTCCAAGTGAATCCAAGTAATCCAACCATATACTGCTCCATGTTCTCCCTCTTCACACCCAAAAAACAAACTATGCAGGCGCAGGTTCTTGACTCTACTAAATATGATTCTTTACTCTCAAAACAACATGCACTATTTCCTTCAGACCAGAAAGGTTGATTGCCTTCGTCTCCTGGCTATTATCGTCGAACAGATGGAAACTGTGTTACATATTTCTATTAGGTTTGTCCAGAAATACTCTATAAAGGTCAAAACAACAAGAAAGAGCTGAAATTAGAAAATAAATGCTCACATTTGAAGACTGAATTTTTGAGAGTTGCCTGGCACACTAGCTCTCTTTACATTATACAAGTTGAGCATATTAGTGCTTATTGAACACTCTGAGTCACTGATCTCTTTATCAGTGTTAAACACCAAGTCTAGCAAATTTACAACTTTAGTAGTGCATCTCTATATAGAGAGTCCTAAAAAACAAGGTCCTGACTTTGAGATGGAGGGAGAGGGAGTAATTATTTGAACAGATTAAGTTTTAACATTTGGGCTTATTAATCATTCTCTTCATATGAATTAGAAGAAAAAACTGGCTCATTAAAATTTGTAATCCTGACTTGTCTGGGATCGATCATTGTTGATTCTAATTGATCTCTTAATTCGAGTTTCCTGCTGTGATAAGTTTCAGGCTGGTTAAACATATATCATTTGTTTGTCATGTGTGTTACATCCTCGAATTGTTAAATTCAGAGAACTCTGTGCAATATCAGATGGATACATATATGATAACTAACAGATTCTTGCTTTAACTGCCTACCGTGATCTGATTGGAAATGAGGCAATATTTACTGTAGTGATGAAATGGACTTACACCTCTCTTTGCTTTACATATTCTTCTCTCTTTTTACAGGATTCAGAGAGAAGAACTCTAAAAGGAAGTCAACGTCATCTAAGTCCCCAGAATCTAACAAAAAGGCCAAGCTGAAAGAGCCTGTGGAAAATGGGAAGGGTAAGATGAAAGAACAACCCTCGGATAACGAAAATGAAGATGCACAAGCTGAAGAGGAAGTCAATGAAGTTGAGGATAGAGTTGATGATTAACGAGATTATTGTTTGCGCTTGCCTTCTTCGTTAGACATTTTACTCGTGCCTTGTTAACCCCCCCAGAAAAATGTAATCTTATCTTGGATGCAAAGTTAACAAACAGTTTGTAGAGCTTTATTCTGGAGTAAAATGAAGTTCTTTGGGAATTG</genome_strand>
        <mrna_strand>GAAAAATGGCGGAGATAGAGAAGCAGAACAAGGAGAAGGAGAAAGTAGTAGCAGAAACAACAGTGCAAATCGATCAAGAGGGTCTTCCCAAGACTATTGTACGTAGGCTTGTGAAGGAAAAGCTTTCTCAGCTATCTACAGATACTGATATCTCACTTCTTCGTGACTCGCTTCTTGCTTTCTCTGAAAGTGCTCGAATTTTCATCCATTACCTCTCCGCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTAATGACATATGCAAGGAGTCTAAGAGGCAAACGATAAATGCAGAAGATGTGTTCAAGGCCCTTGAAGAGATTGAGTTTCCAGAGCTCATTGAGCCTCTCAAAGCTTCTCTTGAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCAGAGAGAAGAACTCTAAAAGGAAGTCAACGTCATCTAAGTCCCCAGAATCTAACAAAAAGGCCAAGCTGAAAGAGCCTGTGGAAAATGGGAAGGGTAAGATGAAAGAACAACCCTCGGATAACGAAAATGAAGATGCACAAGCTGAAGAGGAAGTCAATGAAGTTGAGGATAGAGTTGATGATTAACGAGATTATTGTTTGCGCTTGCCTTCTTCGTTAGACATTTTACTCGTGCCTTGTTAACCCCCCCAGAAAAATGTAATCTTATCTTGGATGCAAAGTTAACAAACAGTTTGTAGAGCTTTATTCTGGAGTAAAATGAAGTTCTTTGGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>20</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="3974" PGL_stop="6856"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3974" e_stop="4151"/>
            <exon e_start="4701" e_stop="4867"/>
            <exon e_start="4956" e_stop="5060"/>
            <exon e_start="5162" e_stop="5218"/>
            <exon e_start="5916" e_stop="6160"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.744" e_score="0.910"/>
          <exon-intron don_prob="0.996" acc_prob="0.944" e_score="0.934"/>
          <exon-intron don_prob="0.975" acc_prob="0.822" e_score="0.981"/>
          <exon-intron don_prob="0.982" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="3974" e_stop="4151" e_length="178"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.744">
            <gDNA_intron_boundary i_start="4152" i_stop="4700" i_length="549"/>
          </intron>
          <exon e_serial="2" e_score="0.934">
            <gDNA_exon_boundary e_start="4701" e_stop="4867" e_length="167"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.944">
            <gDNA_intron_boundary i_start="4868" i_stop="4955" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="4956" e_stop="5060" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.822">
            <gDNA_intron_boundary i_start="5061" i_stop="5161" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5162" e_stop="5218" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.987">
            <gDNA_intron_boundary i_start="5219" i_stop="5915" i_length="697"/>
          </intron>
          <exon e_serial="5" e_score="0.955">
            <gDNA_exon_boundary e_start="5916" e_stop="6160" e_length="245"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3974" stop="4151"/>
              <exon start="4701" stop="4867"/>
              <exon start="4956" stop="5060"/>
              <exon start="5162" stop="5218"/>
              <exon start="5916" stop="6160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8796-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTATAAATTCTGTATCATACATACGAACTGAAATGGTGCTGCCATTGTGTATTCCCAATCACTCTCACTTCATCTCTCCTTTAAGCTCAGTCGAATTCTCTCCTCCGCCACCGCAGCGGCGCCGTGCACGGCCCAGATTCACGACTGTACTATCCGTACTCAAAACCTCTCGACCCG : TGAGTGAAGTCACAGTGGATGACGCTCTACGAGATTTCTTGAGGGATAGAGAGTTAAAGGGGGATGTTATCTCGAGAATTTCTGATAGAATCTGGCTGAGGAACGTGGCTGGTTTTGATTCGGCAGAAGCTGGGAGTGGGACAAGTGAGGCTACTCAATCGGAGGAG : GTATCAGGGGAAGATAATGAAGGTGGGTTTTTGAAGTTGAAAAGTACCAAAGAGTGGCTTTCAGGTGACGCCACGGCGCCAGTTAATAAAAAGAGGACATTTAAG : GAAATACAAGATGACAGGGAAAGAACGAAAAGGCTAAACTTTCTCCAATATGAAGCT : CTTAAGAGGGAGCTACTTTTCTTAACGGTGGGCATTGGGACTGCTTGCACTGGATACTGTTTGGTAGTTTTATCAGTCCAGGTATTTGGTAGATTTTTTTTACATGTTCTGAGGTCATGAGACATTCTATAATAGAAGGCATATAGTGTTTCCTCACAACCATTGGTGGCTATGCTTAGTTGTGCTATATTTATCTAGATCTTCACTTGAGCTAGAAAAGCAATGGAGAGCACATGCGTGTAAAT</gDNA_template>
            <first_frame> C  I  N  S  V  S  Y  I  R  T  E  M  V  L  P  L  C  I  P  N  H  S  H  F  I  S  P  L  S  S  V  E  F  S  P  P  P  P  Q  R  R  R  A  R  P  R  F  T  T  V  L  S  V  L  K  T  S  R  P   : V  S  E  V  T  V  D  D  A  L  R  D  F  L  R  D  R  E  L  K  G  D  V  I  S  R  I  S  D  R  I  W  L  R  N  V  A  G  F  D  S  A  E  A  G  S  G  T  S  E  A  T  Q  S  E  E  :  V  S  G  E  D  N  E  G  G  F  L  K  L  K  S  T  K  E  W  L  S  G  D  A  T  A  P  V  N  K  K  R  T  F  K  :  E  I  Q  D  D  R  E  R  T  K  R  L  N  F  L  Q  Y  E  A  :  L  K  R  E  L  L  F  L  T  V  G  I  G  T  A  C  T  G  Y  C  L  V  V  L  S  V  Q  V  F  G  R  F  F  L  H  V  L  R  S  *  D  I  L  *  *  K  A  Y  S  V  S  S  Q  P  L  V  A  M  L  S  C  A  I  F  I  *  I  F  T  *  A  R  K  A  M  E  S  T  C  V  *   </first_frame>
            <second_frame>  V  *  I  L  Y  H  T  Y  E  L  K  W  C  C  H  C  V  F  P  I  T  L  T  S  S  L  L  *  A  Q  S  N  S  L  L  R  H  R  S  G  A  V  H  G  P  D  S  R  L  Y  Y  P  Y  S  K  P  L  D  P  :  *  V  K  S  Q  W  M  T  L  Y  E  I  S  *  G  I  E  S  *  R  G  M  L  S  R  E  F  L  I  E  S  G  *  G  T  W  L  V  L  I  R  Q  K  L  G  V  G  Q  V  R  L  L  N  R  R  R :   Y  Q  G  K  I  M  K  V  G  F  *  S  *  K  V  P  K  S  G  F  Q  V  T  P  R  R  Q  L  I  K  R  G  H  L  R :   K  Y  K  M  T  G  K  E  R  K  G  *  T  F  S  N  M  K  L :   L  R  G  S  Y  F  S  *  R  W  A  L  G  L  L  A  L  D  T  V  W  *  F  Y  Q  S  R  Y  L  V  D  F  F  Y  M  F  *  G  H  E  T  F  Y  N  R  R  H  I  V  F  P  H  N  H  W  W  L  C  L  V  V  L  Y  L  S  R  S  S  L  E  L  E  K  Q  W  R  A  H  A  C  K  </second_frame>
            <third_frame>   Y  K  F  C  I  I  H  T  N  *  N  G  A  A  I  V  Y  S  Q  S  L  S  L  H  L  S  F  K  L  S  R  I  L  S  S  A  T  A  A  A  P  C  T  A  Q  I  H  D  C  T  I  R  T  Q  N  L  S  T  R :   E  *  S  H  S  G  *  R  S  T  R  F  L  E  G  *  R  V  K  G  G  C  Y  L  E  N  F  *  *  N  L  A  E  E  R  G  W  F  *  F  G  R  S  W  E  W  D  K  *  G  Y  S  I  G  G   : G  I  R  G  R  *  *  R  W  V  F  E  V  E  K  Y  Q  R  V  A  F  R  *  R  H  G  A  S  *  *  K  E  D  I  *   : G  N  T  R  *  Q  G  K  N  E  K  A  K  L  S  P  I  *  S   : S  *  E  G  A  T  F  L  N  G  G  H  W  D  C  L  H  W  I  L  F  G  S  F  I  S  P  G  I  W  *  I  F  F  T  C  S  E  V  M  R  H  S  I  I  E  G  I  *  C  F  L  T  T  I  G  G  Y  A  *  L  C  Y  I  Y  L  D  L  H  L  S  *  K  S  N  G  E  H  M  R  V  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3974" stop="4151"/>
                    <exon start="4701" stop="4867"/>
                    <exon start="4956" stop="5060"/>
                    <exon start="5162" stop="5218"/>
                    <exon start="5916" stop="6035"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CINSVSYIRTEMVLPLCIPNHSHFISPLSSVEFSPPPPQRRRARPRFTTVLSVLKTSRPVSEVTVDDALRDFLRDRELKGDVISRISDRIWLRNVAGFDSAEAGSGTSEATQSEEVSGEDNEGGFLKLKSTKEWLSGDATAPVNKKRTFKEIQDDRERTKRLNFLQYEALKRELLFLTVGIGTACTGYCLVVLSVQVFGRFFLHVLRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="4754" e_stop="4867"/>
            <exon e_start="4956" e_stop="5060"/>
            <exon e_start="5162" e_stop="5218"/>
            <exon e_start="5916" e_stop="5996"/>
            <exon e_start="6461" e_stop="6495"/>
            <exon e_start="6767" e_stop="6856"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.944" e_score="0.974"/>
          <exon-intron don_prob="0.975" acc_prob="0.822" e_score="0.990"/>
          <exon-intron don_prob="0.982" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.587" acc_prob="0.939" e_score="0.988"/>
          <exon-intron don_prob="0.983" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="4754" e_stop="4867" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.944">
            <gDNA_intron_boundary i_start="4868" i_stop="4955" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="4956" e_stop="5060" e_length="105"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.822">
            <gDNA_intron_boundary i_start="5061" i_stop="5161" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5162" e_stop="5218" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.987">
            <gDNA_intron_boundary i_start="5219" i_stop="5915" i_length="697"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="5916" e_stop="5996" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.587" acc_prob="0.939">
            <gDNA_intron_boundary i_start="5997" i_stop="6460" i_length="464"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6461" e_stop="6495" e_length="35"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.994">
            <gDNA_intron_boundary i_start="6496" i_stop="6766" i_length="271"/>
          </intron>
          <exon e_serial="6" e_score="0.978">
            <gDNA_exon_boundary e_start="6767" e_stop="6856" e_length="90"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4754" stop="4867"/>
              <exon start="4956" stop="5060"/>
              <exon start="5162" stop="5218"/>
              <exon start="5916" stop="5996"/>
              <exon start="6461" stop="6495"/>
              <exon start="6767" stop="6856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1908" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAAGGGGGATGTTATCTCGAGAATTTCTGATAGAATCTGGCTGAGGAACGTGGCTGGTTTTGATTCGGCAGAAGCTGGGAGTGGGACAAGTGAGGCTACTCAATCGGAGGAG : GTATCAGGGGAAGATAATGAAGGTGGGTTTTTGAAGTTGAAAAGTACCAAAGAGTGGCTTTCAGGTGACGCCACGGCGCCAGTTAATAAAAAGAGGACATTTAAG : GAAATACAAGATGACAGGGAAAGAACGAAAAGGCTAAACTTTCTCCAATATGAAGCT : CTTAAGAGGGAGCTACTTTTCTTAACGGTGGGCATTGGGACTGCTTGCACTGGATACTGTTTGGTAGTTTTATCAGTCCAG : GCTGCTCTGAGCTATGCGACAGGAGTTGTTTTCAG : TTGCCTGTACTATCAGCTCCTCTGCCAACATGCAGACAACCTCTCACAAGAGACAGTTCCTGATATTTTCACGAAAAAGAAACTTAAGAA</gDNA_template>
            <first_frame> L  K  G  D  V  I  S  R  I  S  D  R  I  W  L  R  N  V  A  G  F  D  S  A  E  A  G  S  G  T  S  E  A  T  Q  S  E  E  :  V  S  G  E  D  N  E  G  G  F  L  K  L  K  S  T  K  E  W  L  S  G  D  A  T  A  P  V  N  K  K  R  T  F  K  :  E  I  Q  D  D  R  E  R  T  K  R  L  N  F  L  Q  Y  E  A  :  L  K  R  E  L  L  F  L  T  V  G  I  G  T  A  C  T  G  Y  C  L  V  V  L  S  V  Q  :  A  A  L  S  Y  A  T  G  V  V  F  S :   C  L  Y  Y  Q  L  L  C  Q  H  A  D  N  L  S  Q  E  T  V  P  D  I  F  T  K  K  K  L  K   </first_frame>
            <second_frame>  *  R  G  M  L  S  R  E  F  L  I  E  S  G  *  G  T  W  L  V  L  I  R  Q  K  L  G  V  G  Q  V  R  L  L  N  R  R  R :   Y  Q  G  K  I  M  K  V  G  F  *  S  *  K  V  P  K  S  G  F  Q  V  T  P  R  R  Q  L  I  K  R  G  H  L  R :   K  Y  K  M  T  G  K  E  R  K  G  *  T  F  S  N  M  K  L :   L  R  G  S  Y  F  S  *  R  W  A  L  G  L  L  A  L  D  T  V  W  *  F  Y  Q  S  R :   L  L  *  A  M  R  Q  E  L  F  S   : V  A  C  T  I  S  S  S  A  N  M  Q  T  T  S  H  K  R  Q  F  L  I  F  S  R  K  R  N  L  R  </second_frame>
            <third_frame>   K  G  G  C  Y  L  E  N  F  *  *  N  L  A  E  E  R  G  W  F  *  F  G  R  S  W  E  W  D  K  *  G  Y  S  I  G  G   : G  I  R  G  R  *  *  R  W  V  F  E  V  E  K  Y  Q  R  V  A  F  R  *  R  H  G  A  S  *  *  K  E  D  I  *   : G  N  T  R  *  Q  G  K  N  E  K  A  K  L  S  P  I  *  S   : S  *  E  G  A  T  F  L  N  G  G  H  W  D  C  L  H  W  I  L  F  G  S  F  I  S  P   : G  C  S  E  L  C  D  R  S  C  F  Q  :  L  P  V  L  S  A  P  L  P  T  C  R  Q  P  L  T  R  D  S  S  *  Y  F  H  E  K  E  T  *  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4754" stop="4867"/>
                    <exon start="4956" stop="5060"/>
                    <exon start="5162" stop="5218"/>
                    <exon start="5916" stop="5996"/>
                    <exon start="6461" stop="6495"/>
                    <exon start="6767" stop="6854"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKGDVISRISDRIWLRNVAGFDSAEAGSGTSEATQSEEVSGEDNEGGFLKLKSTKEWLSGDATAPVNKKRTFKEIQDDRERTKRLNFLQYEALKRELLFLTVGIGTACTGYCLVVLSVQAALSYATGVVFSCLYYQLLCQHADNLSQETVPDIFTKKKLK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="17357" PGL_stop="17823"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17357" e_stop="17823"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17357" e_stop="17823" e_length="467"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17357" stop="17823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M56-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTGTCAGTTGGAAGTGATAGCAATGGAAGTGGTGTTGTGGCACTTCTTGAGATAGCTAGGCTGTTTTCTGTTCTGTATTCAAATCCTAAAACAAGGGGTAGATATAACTTACTTTTTGGATTGACGTCTGGTGGGCCTTATAACTTCAACGGAACTCAGAAGGTGCACTACTCCTTCCTGAGCATTTTCTATGCATAAGTTGCAGTATATCTTGCTGTGTCTTTTCAATCTGTAGTTTCTTTCTCTTCAGTGGCTTCGAAGTTTTGACCAACGCCTACGGGAGAGTATCGACTATGCCATTTGCTTGAATAGTCTTGGCTCCTTGGGCAATGAGTTACATCTTCATGTTTCTAAACCTCCTGAAAACACATACATACAACAAATATTTCAGGTATGGATTATTGCATCAACTGAAAGAATCTTGGAGTATTTCAATTTTTGTTACTTCTACCACAATCCTTTCTA</gDNA_template>
            <first_frame> H  C  Q  L  E  V  I  A  M  E  V  V  L  W  H  F  L  R  *  L  G  C  F  L  F  C  I  Q  I  L  K  Q  G  V  D  I  T  Y  F  L  D  *  R  L  V  G  L  I  T  S  T  E  L  R  R  C  T  T  P  S  *  A  F  S  M  H  K  L  Q  Y  I  L  L  C  L  F  N  L  *  F  L  S  L  Q  W  L  R  S  F  D  Q  R  L  R  E  S  I  D  Y  A  I  C  L  N  S  L  G  S  L  G  N  E  L  H  L  H  V  S  K  P  P  E  N  T  Y  I  Q  Q  I  F  Q  V  W  I  I  A  S  T  E  R  I  L  E  Y  F  N  F  C  Y  F  Y  H  N  P  F   </first_frame>
            <second_frame>  I  V  S  W  K  *  *  Q  W  K  W  C  C  G  T  S  *  D  S  *  A  V  F  C  S  V  F  K  S  *  N  K  G  *  I  *  L  T  F  W  I  D  V  W  W  A  L  *  L  Q  R  N  S  E  G  A  L  L  L  P  E  H  F  L  C  I  S  C  S  I  S  C  C  V  F  S  I  C  S  F  F  L  F  S  G  F  E  V  L  T  N  A  Y  G  R  V  S  T  M  P  F  A  *  I  V  L  A  P  W  A  M  S  Y  I  F  M  F  L  N  L  L  K  T  H  T  Y  N  K  Y  F  R  Y  G  L  L  H  Q  L  K  E  S  W  S  I  S  I  F  V  T  S  T  T  I  L  S  </second_frame>
            <third_frame>   L  S  V  G  S  D  S  N  G  S  G  V  V  A  L  L  E  I  A  R  L  F  S  V  L  Y  S  N  P  K  T  R  G  R  Y  N  L  L  F  G  L  T  S  G  G  P  Y  N  F  N  G  T  Q  K  V  H  Y  S  F  L  S  I  F  Y  A  *  V  A  V  Y  L  A  V  S  F  Q  S  V  V  S  F  S  S  V  A  S  K  F  *  P  T  P  T  G  E  Y  R  L  C  H  L  L  E  *  S  W  L  L  G  Q  *  V  T  S  S  C  F  *  T  S  *  K  H  I  H  T  T  N  I  S  G  M  D  Y  C  I  N  *  K  N  L  G  V  F  Q  F  L  L  L  L  P  Q  S  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17594" stop="17821"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLSLQWLRSFDQRLRESIDYAICLNSLGSLGNELHLHVSKPPENTYIQQIFQVWIIASTERILEYFNFCYFYHNPF</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17359" stop="17556"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSVGSDSNGSGVVALLEIARLFSVLYSNPKTRGRYNLLFGLTSGGPYNFNGTQKVHYSFLSIFYA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="18876" PGL_stop="18422"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18876" e_stop="18422"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18876" e_stop="18422" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18876" stop="18422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M56-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGACTCGCAGCCTTGAAAACTGCTCATGCTCCCAGGCTACCTACATTATTTTAGTAGCTTTAGCACAGAAACTATTACACATGGCCTTCTAAGGAAATAAGACAAGTCAAAATGGCAGGAGCAACTGATATTCAACTACAAAACCAAGCTCAATAACTTAGTGCTCAATCAGTGTTAATACTATTCAATATAGCTACAAATGAGCTGGGAAAATCTCAACCCTACCCCAACATAAGATCAGATGGAAAGCTTCCTCCTTCACAAGAGAGAATGCTAAATAGAAGTTTGAATAAACAGTTCCTGGGGGGATAGCAGCCAAGGAGAAGATGTTTGAAGGAGAAAAAGAATACTCAGATGCCAGAACATTGAGATTGTCACTAAATCACCAGTTTAATATAACTGACTACTAAAACCCAAAACCAGAAAACACTCTATGGTTATAACCAGACAGATTC</gDNA_template>
            <first_frame> *  L  A  A  L  K  T  A  H  A  P  R  L  P  T  L  F  *  *  L  *  H  R  N  Y  Y  T  W  P  S  K  E  I  R  Q  V  K  M  A  G  A  T  D  I  Q  L  Q  N  Q  A  Q  *  L  S  A  Q  S  V  L  I  L  F  N  I  A  T  N  E  L  G  K  S  Q  P  Y  P  N  I  R  S  D  G  K  L  P  P  S  Q  E  R  M  L  N  R  S  L  N  K  Q  F  L  G  G  *  Q  P  R  R  R  C  L  K  E  K  K  N  T  Q  M  P  E  H  *  D  C  H  *  I  T  S  L  I  *  L  T  T  K  T  Q  N  Q  K  T  L  Y  G  Y  N  Q  T  D   </first_frame>
            <second_frame>  D  S  Q  P  *  K  L  L  M  L  P  G  Y  L  H  Y  F  S  S  F  S  T  E  T  I  T  H  G  L  L  R  K  *  D  K  S  K  W  Q  E  Q  L  I  F  N  Y  K  T  K  L  N  N  L  V  L  N  Q  C  *  Y  Y  S  I  *  L  Q  M  S  W  E  N  L  N  P  T  P  T  *  D  Q  M  E  S  F  L  L  H  K  R  E  C  *  I  E  V  *  I  N  S  S  W  G  D  S  S  Q  G  E  D  V  *  R  R  K  R  I  L  R  C  Q  N  I  E  I  V  T  K  S  P  V  *  Y  N  *  L  L  K  P  K  T  R  K  H  S  M  V  I  T  R  Q  I  </second_frame>
            <third_frame>   T  R  S  L  E  N  C  S  C  S  Q  A  T  Y  I  I  L  V  A  L  A  Q  K  L  L  H  M  A  F  *  G  N  K  T  S  Q  N  G  R  S  N  *  Y  S  T  T  K  P  S  S  I  T  *  C  S  I  S  V  N  T  I  Q  Y  S  Y  K  *  A  G  K  I  S  T  L  P  Q  H  K  I  R  W  K  A  S  S  F  T  R  E  N  A  K  *  K  F  E  *  T  V  P  G  G  I  A  A  K  E  K  M  F  E  G  E  K  E  Y  S  D  A  R  T  L  R  L  S  L  N  H  Q  F  N  I  T  D  Y  *  N  P  K  P  E  N  T  L  W  L  *  P  D  R  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0303G16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="39011" PGL_stop="29183"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39011" e_stop="38644"/>
            <exon e_start="37607" e_stop="37378"/>
            <exon e_start="35027" e_stop="34931"/>
            <exon e_start="32680" e_stop="32531"/>
            <exon e_start="32420" e_stop="32294"/>
            <exon e_start="31565" e_stop="31453"/>
            <exon e_start="31362" e_stop="31299"/>
            <exon e_start="31210" e_stop="31117"/>
            <exon e_start="31024" e_stop="30916"/>
            <exon e_start="29619" e_stop="29183"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.995" e_score="0.883"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.240" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.735" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.883">
            <gDNA_exon_boundary e_start="39011" e_stop="38644" e_length="368"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.995">
            <gDNA_intron_boundary i_start="38643" i_stop="37608" i_length="1036"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37607" e_stop="37378" e_length="230"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="37377" i_stop="35028" i_length="2350"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35027" e_stop="34931" e_length="97"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="0.968">
            <gDNA_intron_boundary i_start="34930" i_stop="32681" i_length="2250"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32680" e_stop="32531" e_length="150"/>
          </exon>
          <intron i_serial="4" don_prob="0.934" acc_prob="0.975">
            <gDNA_intron_boundary i_start="32530" i_stop="32421" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32420" e_stop="32294" e_length="127"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.969">
            <gDNA_intron_boundary i_start="32293" i_stop="31566" i_length="728"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="31565" e_stop="31453" e_length="113"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.961">
            <gDNA_intron_boundary i_start="31452" i_stop="31363" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="31362" e_stop="31299" e_length="64"/>
          </exon>
          <intron i_serial="7" don_prob="0.240" acc_prob="0.998">
            <gDNA_intron_boundary i_start="31298" i_stop="31211" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="31210" e_stop="31117" e_length="94"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.989">
            <gDNA_intron_boundary i_start="31116" i_stop="31025" i_length="92"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="31024" e_stop="30916" e_length="109"/>
          </exon>
          <intron i_serial="9" don_prob="0.735" acc_prob="0.994">
            <gDNA_intron_boundary i_start="30915" i_stop="29620" i_length="1296"/>
          </intron>
          <exon e_serial="10" e_score="0.989">
            <gDNA_exon_boundary e_start="29619" e_stop="29183" e_length="437"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39011" stop="38644"/>
              <exon start="37607" stop="37378"/>
              <exon start="35027" stop="34931"/>
              <exon start="32680" stop="32531"/>
              <exon start="32420" stop="32318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8797-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38963" stop="38644"/>
              <exon start="37607" stop="37378"/>
              <exon start="35027" stop="34931"/>
              <exon start="32680" stop="32531"/>
              <exon start="32420" stop="32294"/>
              <exon start="31565" stop="31453"/>
              <exon start="31362" stop="31299"/>
              <exon start="31210" stop="31117"/>
              <exon start="31024" stop="30916"/>
              <exon start="29619" stop="29183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8797" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAACCTTGCTGTCCTTCCCACGAAATCATCAAATAGAAAGAAGAAGAAAAATCAACTCTTTTTTGTATTCTTTTGGCCTTTGCGGTTATCTAAAGCCATCATCAGTTGTTTGAAGTGAAATCGATCTTCTACAATTCTAGGGTTTGATATTGTTTTTTTTCAATTTCAGTATAAATGAAGCCGATACGGTTACCGGAACCTCCATCAAGTCCACGAGGAATCGGCGGTGTGCCGGATATATTTGAAGGTGGAGTTCATGGTGTGATTAGGCGAGCTGTTGTCATCGGTAATGGTTTTCCTGCTTCGGAGAATCAAAGTATTGGTCTGATTCAAGCACTCGGCCTCTCTGATAAGCACACTCTATAT : CGGGTTACTAGACCAAGAGGAGGAGTGAATGAGTGGCTACACTGGCTTCCTGTATCATTACACAAAACGGTGTATTACATCATAAGCCAGATATGTGGGATTCTATTGAGAAGAAGGACTAGAAAACTAGGAACTTTGCCTATGGAAAATGGTGGCAATGTAGGCTTGTCATCTATTTTGGAAGCTGACGTGAAGAGTATTGTTAGAATGGCTCGCGAGACATTTGAGAA : GGATGGTCCATTGCTGGTGATTGCATCTGGAAGAGATACGATCTCAATAACTAGCTCCATTAAAAGATTGGCATCTGATAATGTTTTTGTTGTCCAG : ATTCAGCATCCAAGGTCCCGTTTGGACAGGTTCGACATGGTAATCACCCCCAAGCATGACTATTACTCTTTAACTCCTCAAGGAAAGGAACAAGTTCCTCGTTTTCTGCAAAAGTGGATAACACCCCAAGAACCACCTGATAAGCATGTT : GTACTTACGGTAGGAGCTCTACATCAAGTTGATTTTGCTGCTCTTAGAGCTGCAGCTGCCACCTGGCATGAAGAGTTTGCACCTTTGCCGAAGCCCTTATTGGTGGTCAACATTGGAGGCCCTACAA : GATACTGCAGGTATGGGGCAGACCTTGTAAAGCAATTAACAGCCTCCCTTCACAATGTTCTTGGGAGCTGTGGGAGCATAAGAATCTCGTTCTCCAGAAGGACACCAGAAAAG : CATTCCAAAATCGTGGTCAAAGAGCTTGGTTTGGATCCAAAAGTACACATTTGGAATGGTGAAG : AGCCAAATCCACACATGGGGCATCTGGCTTGGGCTGATGTTTTTGTTATCACAGCAGATTCAGTTAGCATGTTGAGTGAGGCTTGCAGTACTGG : GAAGCCTGTGTATGTAGTTGGAGCCGAACGCTGTACATGGAAGTTCACAGAGTTCCACAAGACACTTAGAGAGAGAGGACTGACTAGGCCATTCACTGGACTTGAGGAT : ATGTCGGAAAGCTGGAGTTACCCTCCGCTTAATGATACCGCAGTTGCAGCTAGCCGTGTGAATGAAGCTCTTGCTGAGAAAGGATGGAAGATTAAAGCATAAAAAATCCTTTTGGTCTAATATTGTTGTTGTTACAAATTTTACTTCTCTATTTACATTTATGATGTGTTCAGAGTTCTTAGTCCATGTATTATGATTGATTTAATTTTACAGGAGGAAAGAAAAGAAGAGATATCCAGTTAAAATCAGAGTTGAACAATGAGGCTCTTATTCTTTTTTAACTCATTGAGGGGGTTTTCCACTTATATATTGACAAAAATAAATGTCAATCTTCATATGTAAAGTAGAAGCATTTGCTTGCTCAACCAAAGATAAAAAAAAATTAACAAGTTTAAATCTAATTATGCTTTGTTGGATTTTTTAAATATATATATTAT</gDNA_template>
            <first_frame> K  N  L  A  V  L  P  T  K  S  S  N  R  K  K  K  K  N  Q  L  F  F  V  F  F  W  P  L  R  L  S  K  A  I  I  S  C  L  K  *  N  R  S  S  T  I  L  G  F  D  I  V  F  F  Q  F  Q  Y  K  *  S  R  Y  G  Y  R  N  L  H  Q  V  H  E  E  S  A  V  C  R  I  Y  L  K  V  E  F  M  V  *  L  G  E  L  L  S  S  V  M  V  F  L  L  R  R  I  K  V  L  V  *  F  K  H  S  A  S  L  I  S  T  L  Y  I :   G  L  L  D  Q  E  E  E  *  M  S  G  Y  T  G  F  L  Y  H  Y  T  K  R  C  I  T  S  *  A  R  Y  V  G  F  Y  *  E  E  G  L  E  N  *  E  L  C  L  W  K  M  V  A  M  *  A  C  H  L  F  W  K  L  T  *  R  V  L  L  E  W  L  A  R  H  L  R   : R  M  V  H  C  W  *  L  H  L  E  E  I  R  S  Q  *  L  A  P  L  K  D  W  H  L  I  M  F  L  L  S  R :   F  S  I  Q  G  P  V  W  T  G  S  T  W  *  S  P  P  S  M  T  I  T  L  *  L  L  K  E  R  N  K  F  L  V  F  C  K  S  G  *  H  P  K  N  H  L  I  S  M  L :   Y  L  R  *  E  L  Y  I  K  L  I  L  L  L  L  E  L  Q  L  P  P  G  M  K  S  L  H  L  C  R  S  P  Y  W  W  S  T  L  E  A  L  Q  :  D  T  A  G  M  G  Q  T  L  *  S  N  *  Q  P  P  F  T  M  F  L  G  A  V  G  A  *  E  S  R  S  P  E  G  H  Q  K  S :   I  P  K  S  W  S  K  S  L  V  W  I  Q  K  Y  T  F  G  M  V  K  :  S  Q  I  H  T  W  G  I  W  L  G  L  M  F  L  L  S  Q  Q  I  Q  L  A  C  *  V  R  L  A  V  L   : G  S  L  C  M  *  L  E  P  N  A  V  H  G  S  S  Q  S  S  T  R  H  L  E  R  E  D  *  L  G  H  S  L  D  L  R  I :   C  R  K  A  G  V  T  L  R  L  M  I  P  Q  L  Q  L  A  V  *  M  K  L  L  L  R  K  D  G  R  L  K  H  K  K  S  F  W  S  N  I  V  V  V  T  N  F  T  S  L  F  T  F  M  M  C  S  E  F  L  V  H  V  L  *  L  I  *  F  Y  R  R  K  E  K  K  R  Y  P  V  K  I  R  V  E  Q  *  G  S  Y  S  F  L  T  H  *  G  G  F  P  L  I  Y  *  Q  K  *  M  S  I  F  I  C  K  V  E  A  F  A  C  S  T  K  D  K  K  K  L  T  S  L  N  L  I  M  L  C  W  I  F  *  I  Y  I  L  </first_frame>
            <second_frame>  K  T  L  L  S  F  P  R  N  H  Q  I  E  R  R  R  K  I  N  S  F  L  Y  S  F  G  L  C  G  Y  L  K  P  S  S  V  V  *  S  E  I  D  L  L  Q  F  *  G  L  I  L  F  F  F  N  F  S  I  N  E  A  D  T  V  T  G  T  S  I  K  S  T  R  N  R  R  C  A  G  Y  I  *  R  W  S  S  W  C  D  *  A  S  C  C  H  R  *  W  F  S  C  F  G  E  S  K  Y  W  S  D  S  S  T  R  P  L  *  *  A  H  S  I   : S  G  Y  *  T  K  R  R  S  E  *  V  A  T  L  A  S  C  I  I  T  Q  N  G  V  L  H  H  K  P  D  M  W  D  S  I  E  K  K  D  *  K  T  R  N  F  A  Y  G  K  W  W  Q  C  R  L  V  I  Y  F  G  S  *  R  E  E  Y  C  *  N  G  S  R  D  I  *  E  :  G  W  S  I  A  G  D  C  I  W  K  R  Y  D  L  N  N  *  L  H  *  K  I  G  I  *  *  C  F  C  C  P   : D  S  A  S  K  V  P  F  G  Q  V  R  H  G  N  H  P  Q  A  *  L  L  L  F  N  S  S  R  K  G  T  S  S  S  F  S  A  K  V  D  N  T  P  R  T  T  *  *  A  C   : C  T  Y  G  R  S  S  T  S  S  *  F  C  C  S  *  S  C  S  C  H  L  A  *  R  V  C  T  F  A  E  A  L  I  G  G  Q  H  W  R  P  Y  K :   I  L  Q  V  W  G  R  P  C  K  A  I  N  S  L  P  S  Q  C  S  W  E  L  W  E  H  K  N  L  V  L  Q  K  D  T  R  K   : A  F  Q  N  R  G  Q  R  A  W  F  G  S  K  S  T  H  L  E  W  *  R :   A  K  S  T  H  G  A  S  G  L  G  *  C  F  C  Y  H  S  R  F  S  *  H  V  E  *  G  L  Q  Y  W  :  E  A  C  V  C  S  W  S  R  T  L  Y  M  E  V  H  R  V  P  Q  D  T  *  R  E  R  T  D  *  A  I  H  W  T  *  G   : Y  V  G  K  L  E  L  P  S  A  *  *  Y  R  S  C  S  *  P  C  E  *  S  S  C  *  E  R  M  E  D  *  S  I  K  N  P  F  G  L  I  L  L  L  L  Q  I  L  L  L  Y  L  H  L  *  C  V  Q  S  S  *  S  M  Y  Y  D  *  F  N  F  T  G  G  K  K  R  R  D  I  Q  L  K  S  E  L  N  N  E  A  L  I  L  F  *  L  I  E  G  V  F  H  L  Y  I  D  K  N  K  C  Q  S  S  Y  V  K  *  K  H  L  L  A  Q  P  K  I  K  K  N  *  Q  V  *  I  *  L  C  F  V  G  F  F  K  Y  I  Y  Y </second_frame>
            <third_frame>   K  P  C  C  P  S  H  E  I  I  K  *  K  E  E  E  K  S  T  L  F  C  I  L  L  A  F  A  V  I  *  S  H  H  Q  L  F  E  V  K  S  I  F  Y  N  S  R  V  *  Y  C  F  F  S  I  S  V  *  M  K  P  I  R  L  P  E  P  P  S  S  P  R  G  I  G  G  V  P  D  I  F  E  G  G  V  H  G  V  I  R  R  A  V  V  I  G  N  G  F  P  A  S  E  N  Q  S  I  G  L  I  Q  A  L  G  L  S  D  K  H  T  L  Y  :  R  V  T  R  P  R  G  G  V  N  E  W  L  H  W  L  P  V  S  L  H  K  T  V  Y  Y  I  I  S  Q  I  C  G  I  L  L  R  R  R  T  R  K  L  G  T  L  P  M  E  N  G  G  N  V  G  L  S  S  I  L  E  A  D  V  K  S  I  V  R  M  A  R  E  T  F  E  K :   D  G  P  L  L  V  I  A  S  G  R  D  T  I  S  I  T  S  S  I  K  R  L  A  S  D  N  V  F  V  V  Q  :  I  Q  H  P  R  S  R  L  D  R  F  D  M  V  I  T  P  K  H  D  Y  Y  S  L  T  P  Q  G  K  E  Q  V  P  R  F  L  Q  K  W  I  T  P  Q  E  P  P  D  K  H  V  :  V  L  T  V  G  A  L  H  Q  V  D  F  A  A  L  R  A  A  A  A  T  W  H  E  E  F  A  P  L  P  K  P  L  L  V  V  N  I  G  G  P  T   : R  Y  C  R  Y  G  A  D  L  V  K  Q  L  T  A  S  L  H  N  V  L  G  S  C  G  S  I  R  I  S  F  S  R  R  T  P  E  K  :  H  S  K  I  V  V  K  E  L  G  L  D  P  K  V  H  I  W  N  G  E   : E  P  N  P  H  M  G  H  L  A  W  A  D  V  F  V  I  T  A  D  S  V  S  M  L  S  E  A  C  S  T  G :   K  P  V  Y  V  V  G  A  E  R  C  T  W  K  F  T  E  F  H  K  T  L  R  E  R  G  L  T  R  P  F  T  G  L  E  D  :  M  S  E  S  W  S  Y  P  P  L  N  D  T  A  V  A  A  S  R  V  N  E  A  L  A  E  K  G  W  K  I  K  A  *  K  I  L  L  V  *  Y  C  C  C  Y  K  F  Y  F  S  I  Y  I  Y  D  V  F  R  V  L  S  P  C  I  M  I  D  L  I  L  Q  E  E  R  K  E  E  I  S  S  *  N  Q  S  *  T  M  R  L  L  F  F  F  N  S  L  R  G  F  S  T  Y  I  L  T  K  I  N  V  N  L  H  M  *  S  R  S  I  C  L  L  N  Q  R  *  K  K  I  N  K  F  K  S  N  Y  A  L  L  D  F  L  N  I  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38835" stop="38644"/>
                    <exon start="37607" stop="37378"/>
                    <exon start="35027" stop="34931"/>
                    <exon start="32680" stop="32531"/>
                    <exon start="32420" stop="32294"/>
                    <exon start="31565" stop="31453"/>
                    <exon start="31362" stop="31299"/>
                    <exon start="31210" stop="31117"/>
                    <exon start="31024" stop="30916"/>
                    <exon start="29619" stop="29518"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1275</number_coding_nucleotides>
                  <number_encoded_amino_acids>425</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKPIRLPEPPSSPRGIGGVPDIFEGGVHGVIRRAVVIGNGFPASENQSIGLIQALGLSDKHTLYRVTRPRGGVNEWLHWLPVSLHKTVYYIISQICGILLRRRTRKLGTLPMENGGNVGLSSILEADVKSIVRMARETFEKDGPLLVIASGRDTISITSSIKRLASDNVFVVQIQHPRSRLDRFDMVITPKHDYYSLTPQGKEQVPRFLQKWITPQEPPDKHVVLTVGALHQVDFAALRAAAATWHEEFAPLPKPLLVVNIGGPTRYCRYGADLVKQLTASLHNVLGSCGSIRISFSRRTPEKHSKIVVKELGLDPKVHIWNGEEPNPHMGHLAWADVFVITADSVSMLSEACSTGKPVYVVGAERCTWKFTEFHKTLRERGLTRPFTGLEDMSESWSYPPLNDTAVAASRVNEALAEKGWKIKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="42377" PGL_stop="43065"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42377" e_stop="43065"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42377" e_stop="43065" e_length="689"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42377" stop="43065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M17-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGCAGGTTTCTTTATTTAATAAGCTGCTTCTTATGGTGAGAAACCTGAGAGCAGAGTCAGATCGCATGCATGCATTAGCATGCATTTGTCGAACCGCTCTCTGTGTTGATCTTTTTGCAAAAGAGAGTGTTAGAAGAGGGCAAAAACCTGTTCCTGGAACCGATATTGCTTCACTTTTTGAGAATGCAAGAATAAAAGAGGACCTCCATAGTGTAACAAGTAAAACCTTGTTTAGAGAAGAACTAGTTGCAATGCTGGTGGAGAGCTGCTTTCAGTTATCACTGCCACTTCCTGAACAAAAAAATTCAGGTATGGAGAGCAGAGTTATTGGAGCTTTAGCATATGGAACTGGTTATGGTGCATTAAACTGGACAGAACCAGCTTTGGAAGTGGTGGAAGTTTGTAGACCATGTGTCAAATGGGATTGTGAAGGTCGAACATATGCTATTGACTGCTATTTGAAGTTGCTTGTCAGGCTTTGTCACATTTATGATACAAGAGGAGGTGTGAAAAGAGTCAAAGATGGGGCTTCTCAGGACCAGATTCTGAATGAAACGCGGTTGCAGAATTTGCAAAGGGATCTTGTCAAAGATCTACGTGAGGTTTGTTGAGCTTTTATAGTTATTTAATGACACATGTAATATGCAATTTGTCCTTGGAGATTGTTCTAGCCCATGGAATTGTATGT</gDNA_template>
            <first_frame> L  Q  V  S  L  F  N  K  L  L  L  M  V  R  N  L  R  A  E  S  D  R  M  H  A  L  A  C  I  C  R  T  A  L  C  V  D  L  F  A  K  E  S  V  R  R  G  Q  K  P  V  P  G  T  D  I  A  S  L  F  E  N  A  R  I  K  E  D  L  H  S  V  T  S  K  T  L  F  R  E  E  L  V  A  M  L  V  E  S  C  F  Q  L  S  L  P  L  P  E  Q  K  N  S  G  M  E  S  R  V  I  G  A  L  A  Y  G  T  G  Y  G  A  L  N  W  T  E  P  A  L  E  V  V  E  V  C  R  P  C  V  K  W  D  C  E  G  R  T  Y  A  I  D  C  Y  L  K  L  L  V  R  L  C  H  I  Y  D  T  R  G  G  V  K  R  V  K  D  G  A  S  Q  D  Q  I  L  N  E  T  R  L  Q  N  L  Q  R  D  L  V  K  D  L  R  E  V  C  *  A  F  I  V  I  *  *  H  M  *  Y  A  I  C  P  W  R  L  F  *  P  M  E  L  Y   </first_frame>
            <second_frame>  C  R  F  L  Y  L  I  S  C  F  L  W  *  E  T  *  E  Q  S  Q  I  A  C  M  H  *  H  A  F  V  E  P  L  S  V  L  I  F  L  Q  K  R  V  L  E  E  G  K  N  L  F  L  E  P  I  L  L  H  F  L  R  M  Q  E  *  K  R  T  S  I  V  *  Q  V  K  P  C  L  E  K  N  *  L  Q  C  W  W  R  A  A  F  S  Y  H  C  H  F  L  N  K  K  I  Q  V  W  R  A  E  L  L  E  L  *  H  M  E  L  V  M  V  H  *  T  G  Q  N  Q  L  W  K  W  W  K  F  V  D  H  V  S  N  G  I  V  K  V  E  H  M  L  L  T  A  I  *  S  C  L  S  G  F  V  T  F  M  I  Q  E  E  V  *  K  E  S  K  M  G  L  L  R  T  R  F  *  M  K  R  G  C  R  I  C  K  G  I  L  S  K  I  Y  V  R  F  V  E  L  L  *  L  F  N  D  T  C  N  M  Q  F  V  L  G  D  C  S  S  P  W  N  C  M  </second_frame>
            <third_frame>   A  G  F  F  I  *  *  A  A  S  Y  G  E  K  P  E  S  R  V  R  S  H  A  C  I  S  M  H  L  S  N  R  S  L  C  *  S  F  C  K  R  E  C  *  K  R  A  K  T  C  S  W  N  R  Y  C  F  T  F  *  E  C  K  N  K  R  G  P  P  *  C  N  K  *  N  L  V  *  R  R  T  S  C  N  A  G  G  E  L  L  S  V  I  T  A  T  S  *  T  K  K  F  R  Y  G  E  Q  S  Y  W  S  F  S  I  W  N  W  L  W  C  I  K  L  D  R  T  S  F  G  S  G  G  S  L  *  T  M  C  Q  M  G  L  *  R  S  N  I  C  Y  *  L  L  F  E  V  A  C  Q  A  L  S  H  L  *  Y  K  R  R  C  E  K  S  Q  R  W  G  F  S  G  P  D  S  E  *  N  A  V  A  E  F  A  K  G  S  C  Q  R  S  T  *  G  L  L  S  F  Y  S  Y  L  M  T  H  V  I  C  N  L  S  L  E  I  V  L  A  H  G  I  V  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42377" stop="42988"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQVSLFNKLLLMVRNLRAESDRMHALACICRTALCVDLFAKESVRRGQKPVPGTDIASLFENARIKEDLHSVTSKTLFREELVAMLVESCFQLSLPLPEQKNSGMESRVIGALAYGTGYGALNWTEPALEVVEVCRPCVKWDCEGRTYAIDCYLKLLVRLCHIYDTRGGVKRVKDGASQDQILNETRLQNLQRDLVKDLREVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="43909" PGL_stop="43250"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43909" e_stop="43250"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43909" e_stop="43250" e_length="660"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43909" stop="43250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M17-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTAACCGACACTGATGTTTGTTCACTGAGTCAGCTAATGCATTGGTCCTAAACTCTTCAAGTTCTTTTATTAGCAATTGCCCTGCCCTGGGATTACGTGATCCCAACCTCTGAGCACACAGAAGAACTGCTTGAACATCTTGAAGGCGATTTGTGCTGCTGGCAGACGAATCTATATTGAAGAGAACTTTGTGGATATTTGATATTATTATATTCAGGGGATCTTCTGGATCATCAGCCAGAAGTGGATCCAAACCTTCTAGATCAATATGCTCTGAGATAGCCCAAATAAGTCGAGTACATATTCTAGGAGTGTTCACCTGCAAGATGCAAGTTCCAGACAAATTTAAGAAACAATATGTCACCTGGTTAGTGAAGTAGTACAGAAGGTTGGAACATGACAAAGGTGAGCCTGAAGTAGAACAGAAATTACTAAATAAAACTCAATTGTGGAAGAAAAGCACCCCGAATAACTTCAGATTATATATAGCTTTACCTTCTCCCCTTCCCTTCAGTTCAGTATTATGAAGGAAGGGGGACATAGTCAGAGAAGGTGTAGAGTTCCTTTAGCGGATGACATGCTGATGAACAAACTCTGTGCAGCTCAATATCATCTTAGCATAGGAAAAAAACTAAGAAAAGTTAAGCTAGAATAATGC</gDNA_template>
            <first_frame> Y  *  P  T  L  M  F  V  H  *  V  S  *  C  I  G  P  K  L  F  K  F  F  Y  *  Q  L  P  C  P  G  I  T  *  S  Q  P  L  S  T  Q  K  N  C  L  N  I  L  K  A  I  C  A  A  G  R  R  I  Y  I  E  E  N  F  V  D  I  *  Y  Y  Y  I  Q  G  I  F  W  I  I  S  Q  K  W  I  Q  T  F  *  I  N  M  L  *  D  S  P  N  K  S  S  T  Y  S  R  S  V  H  L  Q  D  A  S  S  R  Q  I  *  E  T  I  C  H  L  V  S  E  V  V  Q  K  V  G  T  *  Q  R  *  A  *  S  R  T  E  I  T  K  *  N  S  I  V  E  E  K  H  P  E  *  L  Q  I  I  Y  S  F  T  F  S  P  S  L  Q  F  S  I  M  K  E  G  G  H  S  Q  R  R  C  R  V  P  L  A  D  D  M  L  M  N  K  L  C  A  A  Q  Y  H  L  S  I  G  K  K  L  R  K  V  K  L  E  *  C </first_frame>
            <second_frame>  I  N  R  H  *  C  L  F  T  E  S  A  N  A  L  V  L  N  S  S  S  S  F  I  S  N  C  P  A  L  G  L  R  D  P  N  L  *  A  H  R  R  T  A  *  T  S  *  R  R  F  V  L  L  A  D  E  S  I  L  K  R  T  L  W  I  F  D  I  I  I  F  R  G  S  S  G  S  S  A  R  S  G  S  K  P  S  R  S  I  C  S  E  I  A  Q  I  S  R  V  H  I  L  G  V  F  T  C  K  M  Q  V  P  D  K  F  K  K  Q  Y  V  T  W  L  V  K  *  Y  R  R  L  E  H  D  K  G  E  P  E  V  E  Q  K  L  L  N  K  T  Q  L  W  K  K  S  T  P  N  N  F  R  L  Y  I  A  L  P  S  P  L  P  F  S  S  V  L  *  R  K  G  D  I  V  R  E  G  V  E  F  L  *  R  M  T  C  *  *  T  N  S  V  Q  L  N  I  I  L  A  *  E  K  N  *  E  K  L  S  *  N  N   </second_frame>
            <third_frame>   L  T  D  T  D  V  C  S  L  S  Q  L  M  H  W  S  *  T  L  Q  V  L  L  L  A  I  A  L  P  W  D  Y  V  I  P  T  S  E  H  T  E  E  L  L  E  H  L  E  G  D  L  C  C  W  Q  T  N  L  Y  *  R  E  L  C  G  Y  L  I  L  L  Y  S  G  D  L  L  D  H  Q  P  E  V  D  P  N  L  L  D  Q  Y  A  L  R  *  P  K  *  V  E  Y  I  F  *  E  C  S  P  A  R  C  K  F  Q  T  N  L  R  N  N  M  S  P  G  *  *  S  S  T  E  G  W  N  M  T  K  V  S  L  K  *  N  R  N  Y  *  I  K  L  N  C  G  R  K  A  P  R  I  T  S  D  Y  I  *  L  Y  L  L  P  F  P  S  V  Q  Y  Y  E  G  R  G  T  *  S  E  K  V  *  S  S  F  S  G  *  H  A  D  E  Q  T  L  C  S  S  I  S  S  *  H  R  K  K  T  K  K  S  *  A  R  I  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43764" stop="43528"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRFVLLADESILKRTLWIFDIIIFRGSSGSSARSGSKPSRSICSEIAQISRVHILGVFTCKMQVPDKFKKQYVTWLVK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="70868" PGL_stop="62862"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70868" e_stop="70670"/>
            <exon e_start="69054" e_stop="68988"/>
            <exon e_start="68789" e_stop="68582"/>
            <exon e_start="66919" e_stop="66750"/>
            <exon e_start="66237" e_stop="66160"/>
            <exon e_start="65288" e_stop="65156"/>
            <exon e_start="65081" e_stop="64990"/>
            <exon e_start="64200" e_stop="64144"/>
            <exon e_start="63350" e_stop="63279"/>
            <exon e_start="63197" e_stop="62862"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="0.995"/>
          <exon-intron don_prob="0.999" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.988"/>
          <exon-intron don_prob="0.999" acc_prob="0.684" e_score="0.974"/>
          <exon-intron don_prob="0.932" acc_prob="0.990" e_score="0.970"/>
          <exon-intron don_prob="0.980" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.989" e_score="0.982"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="70868" e_stop="70670" e_length="199"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="70669" i_stop="69055" i_length="1615"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69054" e_stop="68988" e_length="67"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.967">
            <gDNA_intron_boundary i_start="68987" i_stop="68790" i_length="198"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68789" e_stop="68582" e_length="208"/>
          </exon>
          <intron i_serial="3" don_prob="0.884" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68581" i_stop="66920" i_length="1662"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="66919" e_stop="66750" e_length="170"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="66749" i_stop="66238" i_length="512"/>
          </intron>
          <exon e_serial="5" e_score="0.974">
            <gDNA_exon_boundary e_start="66237" e_stop="66160" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.684">
            <gDNA_intron_boundary i_start="66159" i_stop="65289" i_length="871"/>
          </intron>
          <exon e_serial="6" e_score="0.970">
            <gDNA_exon_boundary e_start="65288" e_stop="65156" e_length="133"/>
          </exon>
          <intron i_serial="6" don_prob="0.932" acc_prob="0.990">
            <gDNA_intron_boundary i_start="65155" i_stop="65082" i_length="74"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65081" e_stop="64990" e_length="92"/>
          </exon>
          <intron i_serial="7" don_prob="0.980" acc_prob="0.980">
            <gDNA_intron_boundary i_start="64989" i_stop="64201" i_length="789"/>
          </intron>
          <exon e_serial="8" e_score="0.982">
            <gDNA_exon_boundary e_start="64200" e_stop="64144" e_length="57"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.989">
            <gDNA_intron_boundary i_start="64143" i_stop="63351" i_length="793"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="63350" e_stop="63279" e_length="72"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="63278" i_stop="63198" i_length="81"/>
          </intron>
          <exon e_serial="10" e_score="0.914">
            <gDNA_exon_boundary e_start="63197" e_stop="62862" e_length="336"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70868" stop="70670"/>
              <exon start="69054" stop="68988"/>
              <exon start="68789" stop="68582"/>
              <exon start="66919" stop="66750"/>
              <exon start="66237" stop="66160"/>
              <exon start="65288" stop="65156"/>
              <exon start="65081" stop="64990"/>
              <exon start="64200" stop="64144"/>
              <exon start="63350" stop="63279"/>
              <exon start="63197" stop="62862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6760-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70865" stop="70670"/>
              <exon start="69054" stop="68988"/>
              <exon start="68789" stop="68582"/>
              <exon start="66919" stop="66750"/>
              <exon start="66237" stop="66160"/>
              <exon start="65288" stop="65246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6760" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACAAAAGAGAAATCAAACTTTTAATAACAAAACTTCATCAAATTGTCCATTCAAGATTCTTTGATTTTCTGTTTCTTTCTAATTTCTTTGATTTTCAAAGAACCCAAACTGCGAATTTGTTTTGTGAAAGAGATCGATGATATTACTGCAATCTCCCTCTAGATATCTTCTTCAGATCTTGTACAATCGCGTCCAGAG : TCTTGAGAAAGGGGTTGAACTGGACAGCCAATGGGTTGAATTTGATGATATCCGTTACCATATTCAG : GGTTCAGTGAAAAATCCAAATGTCTTGCTTCTTTCTGTATCATTGCCCATACCACCTCCAGAAACCGTCCTCTTTGGTGGACTTCCACTTGGAGCGCTAGAAGCCATAAAAGCAGCATATGGTGCAGTTGCACAAATTCTTGATCCTCCAAGAGATGGGTTTAATCTCACACTTAAACTAAACTTGTCAAAACTTCCCCCAGATGAAG : AGCAAAAACATGCACTCCTGACAAAGATTGCATCCGTGAGGGAGGTAGTAATGGGAGCCCCACTGAGGGCAGTTTTGAAACAACTTGTTACAAGGACAGTTCCTTCCGATCTAGGCAAGCCCGTTGCCCTGGTTCATCGTCCTAATGAGTCTTTTTTCCTTGTACCTCAG : GCAGACAAGGTGACCGTCATATTTCCTATGAGATTCAATGATTCCATAGATACTGTTCTAGCAACATCTTTCTTACAG : GAATTTGTTGAGGCAAGACGAACTGCTGGACTTAATAATGCCCCTCCTTGTTTGTGGTCTCCTTCTCCTCCTCAAGAACTGACAGAAGCTTTTACAGAAGCATTATCTGCTAATGCCGGATTTGTTAGTTTTG : TAATTTTTTCTCGCCACGTGGAAGGCAGAAAGCTGGACAGAACTGTCTGGAACCTATCAACCTTTCATGCTTATGTAAATTATCATGTTAAG : TGTTCTGAATGTTTCATGCATACTCGGATGAGGCGTCAGGTGGAGTCATTGATACAG : GCACTTGACCGTGCCAAACCAGATCCCGAGAAGGCCAAGAAAAATTCACCTAACAGATCATTTAAACGAATG : AGCCTCAAGGATGGCAATAACAGTTTGGGTTCGCGAAGTTGGAAGTAGAAAATCCGAGAATTGAAAAGGTTACTTGGCCTGAAATCATCGTAAACGCAGCTTCTTCTCTAATAAACTCCATTTTTTTTCATCGTGTTCATGTTTATAGTTGTCGTTGTAAATCTCATTGAATTGTCTTCGGCGTTAGATTTGAACTTAGCCATCTTTGCTGAAGCTTCAAGTTTTGGTTAGCAGATTGCATTCGTTTTAGTTCTGCAAAGTAGTGTAAAGATTGCTTTGTAACAACTTGCAATATTCCCATTTTATAAAGTTGCATTTTTTGCTTATGCTCTAAAA</gDNA_template>
            <first_frame> D  K  R  E  I  K  L  L  I  T  K  L  H  Q  I  V  H  S  R  F  F  D  F  L  F  L  S  N  F  F  D  F  Q  R  T  Q  T  A  N  L  F  C  E  R  D  R  *  Y  Y  C  N  L  P  L  D  I  F  F  R  S  C  T  I  A  S  R   : V  L  R  K  G  L  N  W  T  A  N  G  L  N  L  M  I  S  V  T  I  F  R :   V  Q  *  K  I  Q  M  S  C  F  F  L  Y  H  C  P  Y  H  L  Q  K  P  S  S  L  V  D  F  H  L  E  R  *  K  P  *  K  Q  H  M  V  Q  L  H  K  F  L  I  L  Q  E  M  G  L  I  S  H  L  N  *  T  C  Q  N  F  P  Q  M  K  :  S  K  N  M  H  S  *  Q  R  L  H  P  *  G  R  *  *  W  E  P  H  *  G  Q  F  *  N  N  L  L  Q  G  Q  F  L  P  I  *  A  S  P  L  P  W  F  I  V  L  M  S  L  F  S  L  Y  L  R :   Q  T  R  *  P  S  Y  F  L  *  D  S  M  I  P  *  I  L  F  *  Q  H  L  S  Y  R :   N  L  L  R  Q  D  E  L  L  D  L  I  M  P  L  L  V  C  G  L  L  L  L  L  K  N  *  Q  K  L  L  Q  K  H  Y  L  L  M  P  D  L  L  V  L  :  *  F  F  L  A  T  W  K  A  E  S  W  T  E  L  S  G  T  Y  Q  P  F  M  L  M  *  I  I  M  L  S :   V  L  N  V  S  C  I  L  G  *  G  V  R  W  S  H  *  Y  R :   H  L  T  V  P  N  Q  I  P  R  R  P  R  K  I  H  L  T  D  H  L  N  E  * :   A  S  R  M  A  I  T  V  W  V  R  E  V  G  S  R  K  S  E  N  *  K  G  Y  L  A  *  N  H  R  K  R  S  F  F  S  N  K  L  H  F  F  S  S  C  S  C  L  *  L  S  L  *  I  S  L  N  C  L  R  R  *  I  *  T  *  P  S  L  L  K  L  Q  V  L  V  S  R  L  H  S  F  *  F  C  K  V  V  *  R  L  L  C  N  N  L  Q  Y  S  H  F  I  K  L  H  F  L  L  M  L  *   </first_frame>
            <second_frame>  T  K  E  K  S  N  F  *  *  Q  N  F  I  K  L  S  I  Q  D  S  L  I  F  C  F  F  L  I  S  L  I  F  K  E  P  K  L  R  I  C  F  V  K  E  I  D  D  I  T  A  I  S  L  *  I  S  S  S  D  L  V  Q  S  R  P  E  :  S  *  E  R  G  *  T  G  Q  P  M  G  *  I  *  *  Y  P  L  P  Y  S   : G  F  S  E  K  S  K  C  L  A  S  F  C  I  I  A  H  T  T  S  R  N  R  P  L  W  W  T  S  T  W  S  A  R  S  H  K  S  S  I  W  C  S  C  T  N  S  *  S  S  K  R  W  V  *  S  H  T  *  T  K  L  V  K  T  S  P  R  *  R :   A  K  T  C  T  P  D  K  D  C  I  R  E  G  G  S  N  G  S  P  T  E  G  S  F  E  T  T  C  Y  K  D  S  S  F  R  S  R  Q  A  R  C  P  G  S  S  S  *  *  V  F  F  P  C  T  S   : G  R  Q  G  D  R  H  I  S  Y  E  I  Q  *  F  H  R  Y  C  S  S  N  I  F  L  T   : G  I  C  *  G  K  T  N  C  W  T  *  *  C  P  S  L  F  V  V  S  F  S  S  S  R  T  D  R  S  F  Y  R  S  I  I  C  *  C  R  I  C  *  F  C :   N  F  F  S  P  R  G  R  Q  K  A  G  Q  N  C  L  E  P  I  N  L  S  C  L  C  K  L  S  C  *   : V  F  *  M  F  H  A  Y  S  D  E  A  S  G  G  V  I  D  T   : G  T  *  P  C  Q  T  R  S  R  E  G  Q  E  K  F  T  *  Q  I  I  *  T  N   : E  P  Q  G  W  Q  *  Q  F  G  F  A  K  L  E  V  E  N  P  R  I  E  K  V  T  W  P  E  I  I  V  N  A  A  S  S  L  I  N  S  I  F  F  H  R  V  H  V  Y  S  C  R  C  K  S  H  *  I  V  F  G  V  R  F  E  L  S  H  L  C  *  S  F  K  F  W  L  A  D  C  I  R  F  S  S  A  K  *  C  K  D  C  F  V  T  T  C  N  I  P  I  L  *  S  C  I  F  C  L  C  S  K  </second_frame>
            <third_frame>   Q  K  R  N  Q  T  F  N  N  K  T  S  S  N  C  P  F  K  I  L  *  F  S  V  S  F  *  F  L  *  F  S  K  N  P  N  C  E  F  V  L  *  K  R  S  M  I  L  L  Q  S  P  S  R  Y  L  L  Q  I  L  Y  N  R  V  Q  S :   L  E  K  G  V  E  L  D  S  Q  W  V  E  F  D  D  I  R  Y  H  I  Q  :  G  S  V  K  N  P  N  V  L  L  L  S  V  S  L  P  I  P  P  P  E  T  V  L  F  G  G  L  P  L  G  A  L  E  A  I  K  A  A  Y  G  A  V  A  Q  I  L  D  P  P  R  D  G  F  N  L  T  L  K  L  N  L  S  K  L  P  P  D  E   : E  Q  K  H  A  L  L  T  K  I  A  S  V  R  E  V  V  M  G  A  P  L  R  A  V  L  K  Q  L  V  T  R  T  V  P  S  D  L  G  K  P  V  A  L  V  H  R  P  N  E  S  F  F  L  V  P  Q  :  A  D  K  V  T  V  I  F  P  M  R  F  N  D  S  I  D  T  V  L  A  T  S  F  L  Q  :  E  F  V  E  A  R  R  T  A  G  L  N  N  A  P  P  C  L  W  S  P  S  P  P  Q  E  L  T  E  A  F  T  E  A  L  S  A  N  A  G  F  V  S  F   : V  I  F  S  R  H  V  E  G  R  K  L  D  R  T  V  W  N  L  S  T  F  H  A  Y  V  N  Y  H  V  K  :  C  S  E  C  F  M  H  T  R  M  R  R  Q  V  E  S  L  I  Q  :  A  L  D  R  A  K  P  D  P  E  K  A  K  K  N  S  P  N  R  S  F  K  R  M  :  S  L  K  D  G  N  N  S  L  G  S  R  S  W  K  *  K  I  R  E  L  K  R  L  L  G  L  K  S  S  *  T  Q  L  L  L  *  *  T  P  F  F  F  I  V  F  M  F  I  V  V  V  V  N  L  I  E  L  S  S  A  L  D  L  N  L  A  I  F  A  E  A  S  S  F  G  *  Q  I  A  F  V  L  V  L  Q  S  S  V  K  I  A  L  *  Q  L  A  I  F  P  F  Y  K  V  A  F  F  A  Y  A  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70740" stop="70670"/>
                    <exon start="69054" stop="68988"/>
                    <exon start="68789" stop="68582"/>
                    <exon start="66919" stop="66750"/>
                    <exon start="66237" stop="66160"/>
                    <exon start="65288" stop="65156"/>
                    <exon start="65081" stop="64990"/>
                    <exon start="64200" stop="64144"/>
                    <exon start="63350" stop="63279"/>
                    <exon start="63197" stop="63150"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>993</number_coding_nucleotides>
                  <number_encoded_amino_acids>331</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRSMILLQSPSRYLLQILYNRVQSLEKGVELDSQWVEFDDIRYHIQGSVKNPNVLLLSVSLPIPPPETVLFGGLPLGALEAIKAAYGAVAQILDPPRDGFNLTLKLNLSKLPPDEEQKHALLTKIASVREVVMGAPLRAVLKQLVTRTVPSDLGKPVALVHRPNESFFLVPQADKVTVIFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPPCLWSPSPPQELTEAFTEALSANAGFVSFVIFSRHVEGRKLDRTVWNLSTFHAYVNYHVKCSECFMHTRMRRQVESLIQALDRAKPDPEKAKKNSPNRSFKRMSLKDGNNSLGSRSWK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="66590" e_stop="66124"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="66590" e_stop="66124" e_length="467"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66590" stop="66124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M365-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTTTACTTGTTGAGCTTGGGTACTATAGCTAAATCAACCAATTCTTTTGACAATAACCCCATGCGGATATCTTTCAGCCTACTTTGCCTCATTGACTCCAGAGTGATCCTGGCATATCCAAGTTCTTCCAGTACTTGTCTCCTTGTTTGTTAAGTGTTTCTGAACTTGTATCTGTATTTAGTTCCAACAATCCCCCCCCCCCCCCCCCACACACACACCCCAAATTTGTTTCTTAATAGGCATGAATTTTTGGAATGCATAAACGATGCACATTGTTGTTATTTTAGTATCTATCTTTGAGGACCTATAAAGTATTTAGATTAAATGATGCAATGTACTGGCTTTTTGCAGGCAGACAAGGTGACCGTCATATTTCCTATGAGATTCAATGATTCCATAGATACTGTTCTAGCAACATCTTTCTTACAGGTAAACTTCTACACGTTTTAATGTGTTCTTGTCCTT</gDNA_template>
            <first_frame> S  F  T  C  *  A  W  V  L  *  L  N  Q  P  I  L  L  T  I  T  P  C  G  Y  L  S  A  Y  F  A  S  L  T  P  E  *  S  W  H  I  Q  V  L  P  V  L  V  S  L  F  V  K  C  F  *  T  C  I  C  I  *  F  Q  Q  S  P  P  P  P  P  T  H  T  P  Q  I  C  F  L  I  G  M  N  F  W  N  A  *  T  M  H  I  V  V  I  L  V  S  I  F  E  D  L  *  S  I  *  I  K  *  C  N  V  L  A  F  C  R  Q  T  R  *  P  S  Y  F  L  *  D  S  M  I  P  *  I  L  F  *  Q  H  L  S  Y  R  *  T  S  T  R  F  N  V  F  L  S   </first_frame>
            <second_frame>  L  L  L  V  E  L  G  Y  Y  S  *  I  N  Q  F  F  *  Q  *  P  H  A  D  I  F  Q  P  T  L  P  H  *  L  Q  S  D  P  G  I  S  K  F  F  Q  Y  L  S  P  C  L  L  S  V  S  E  L  V  S  V  F  S  S  N  N  P  P  P  P  P  P  H  T  H  P  K  F  V  S  *  *  A  *  I  F  G  M  H  K  R  C  T  L  L  L  F  *  Y  L  S  L  R  T  Y  K  V  F  R  L  N  D  A  M  Y  W  L  F  A  G  R  Q  G  D  R  H  I  S  Y  E  I  Q  *  F  H  R  Y  C  S  S  N  I  F  L  T  G  K  L  L  H  V  L  M  C  S  C  P  </second_frame>
            <third_frame>   F  Y  L  L  S  L  G  T  I  A  K  S  T  N  S  F  D  N  N  P  M  R  I  S  F  S  L  L  C  L  I  D  S  R  V  I  L  A  Y  P  S  S  S  S  T  C  L  L  V  C  *  V  F  L  N  L  Y  L  Y  L  V  P  T  I  P  P  P  P  P  H  T  H  T  P  N  L  F  L  N  R  H  E  F  L  E  C  I  N  D  A  H  C  C  Y  F  S  I  Y  L  *  G  P  I  K  Y  L  D  *  M  M  Q  C  T  G  F  L  Q  A  D  K  V  T  V  I  F  P  M  R  F  N  D  S  I  D  T  V  L  A  T  S  F  L  Q  V  N  F  Y  T  F  *  C  V  L  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0303G16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="63465" PGL_stop="63928"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63465" e_stop="63928"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="63465" e_stop="63928" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63465" stop="63928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M365-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAACTGCAGTAAGACGAAACAATGCAGTTGAGTAGGCAGAATGTGATGTCAAAACGGAAAATTGAATTAAAGCTGAGATACATGTGGGACTTCAGTTCTTAAAAGGCACTAGGATCATCAAGCATCGTGTTCGGAAGGTCACATAAACGCCATTTAAGCAACAAGTATTATATAGTATAAAACCAGTAATGTTATATGAGAGTGAATGTGGGCTGCTAGAGTTCCATCGTATCGACAAGATGAGAGTTGCAGAGATGTAGATACTAAGATGAATGTGCCGGTCATACAAGAACAAGATTGGACATTAACCATTTAGCTTTTTCGTAGAATGACTTTGATGAACATGCTTCATGGAAAAACACAAAACGGAAATCACCTAATGCCCAAGAGAAACAAACTCAGACATTTTAATAGGATTGCACGAAGAACCATAAGAAACCTCTACATTCAGCCTCATCAGAACA</gDNA_template>
            <first_frame> E  L  Q  *  D  E  T  M  Q  L  S  R  Q  N  V  M  S  K  R  K  I  E  L  K  L  R  Y  M  W  D  F  S  S  *  K  A  L  G  S  S  S  I  V  F  G  R  S  H  K  R  H  L  S  N  K  Y  Y  I  V  *  N  Q  *  C  Y  M  R  V  N  V  G  C  *  S  S  I  V  S  T  R  *  E  L  Q  R  C  R  Y  *  D  E  C  A  G  H  T  R  T  R  L  D  I  N  H  L  A  F  S  *  N  D  F  D  E  H  A  S  W  K  N  T  K  R  K  S  P  N  A  Q  E  K  Q  T  Q  T  F  *  *  D  C  T  K  N  H  K  K  P  L  H  S  A  S  S  E   </first_frame>
            <second_frame>  N  C  S  K  T  K  Q  C  S  *  V  G  R  M  *  C  Q  N  G  K  L  N  *  S  *  D  T  C  G  T  S  V  L  K  R  H  *  D  H  Q  A  S  C  S  E  G  H  I  N  A  I  *  A  T  S  I  I  *  Y  K  T  S  N  V  I  *  E  *  M  W  A  A  R  V  P  S  Y  R  Q  D  E  S  C  R  D  V  D  T  K  M  N  V  P  V  I  Q  E  Q  D  W  T  L  T  I  *  L  F  R  R  M  T  L  M  N  M  L  H  G  K  T  Q  N  G  N  H  L  M  P  K  R  N  K  L  R  H  F  N  R  I  A  R  R  T  I  R  N  L  Y  I  Q  P  H  Q  N  </second_frame>
            <third_frame>   T  A  V  R  R  N  N  A  V  E  *  A  E  C  D  V  K  T  E  N  *  I  K  A  E  I  H  V  G  L  Q  F  L  K  G  T  R  I  I  K  H  R  V  R  K  V  T  *  T  P  F  K  Q  Q  V  L  Y  S  I  K  P  V  M  L  Y  E  S  E  C  G  L  L  E  F  H  R  I  D  K  M  R  V  A  E  M  *  I  L  R  *  M  C  R  S  Y  K  N  K  I  G  H  *  P  F  S  F  F  V  E  *  L  *  *  T  C  F  M  E  K  H  K  T  E  I  T  *  C  P  R  E  T  N  S  D  I  L  I  G  L  H  E  E  P  *  E  T  S  T  F  S  L  I  R  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0303G16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="86211" PGL_stop="86916"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86211" e_stop="86916"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="86211" e_stop="86916" e_length="706"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86211" stop="86864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7922-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86233" stop="86916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7922" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCTCCATTTTTGCCCCAATCAGTATTCAGTATCTTCTCCGACCAATGAGCAAAGAAGGAAGTAGAAGAGGAGTAAAATGGAGCTGGACCTCCGCCTTCGTCGGTGCCGCCGCTGCCGCAGCAACGGTGATGACACTCTCTTCGAAGCCACGGGATCCTGATTTTCATCTCATCTCCATCGATCTCACTTCCTTCAAGCTCAATTTCCCCGTCGTAGACGCGGAACTCATCCTCACCGTTCACGTGACTAACCCTAACGTTACTTCAATCAACTACTCCTCAACAGAAATGTCGATTTTCTACTCCGGCGATCACCTCGGTTCAGCTCGTGTGAAAGCCGGATCTCAGCCGCCGCGTTCCTGTCAGGTACTCCGTCTTCCGGCGAGGTTAAGCGGACTTCAACTTGCACATCACGGGAAGGAATTCGTCGCCGATGTAGCGAAGAGGGAGATGTTGCTGGATGCTACGGTGGATATAGAAGGTTTTGCGAAGGTGATGTGGTGGGACCATAAATTCCGGGTGCACGTGGATAGTCACGTGACCGTAGACCCGGTTTTTCTTGACGTTATTGATCAGGAAAATAAATCGGCTTTAGAGGTCTTTGTGAAATAACGGTTCAGTCCGGTTCAGTGTGTTGTATCGGTTTATTTTGTATTCATCACCACTAAAAATGTACTTCAGTAATTAAAATATTTAAGTTCTATC</gDNA_template>
            <first_frame> L  L  H  F  C  P  N  Q  Y  S  V  S  S  P  T  N  E  Q  R  R  K  *  K  R  S  K  M  E  L  D  L  R  L  R  R  C  R  R  C  R  S  N  G  D  D  T  L  F  E  A  T  G  S  *  F  S  S  H  L  H  R  S  H  F  L  Q  A  Q  F  P  R  R  R  R  G  T  H  P  H  R  S  R  D  *  P  *  R  Y  F  N  Q  L  L  L  N  R  N  V  D  F  L  L  R  R  S  P  R  F  S  S  C  E  S  R  I  S  A  A  A  F  L  S  G  T  P  S  S  G  E  V  K  R  T  S  T  C  T  S  R  E  G  I  R  R  R  C  S  E  E  G  D  V  A  G  C  Y  G  G  Y  R  R  F  C  E  G  D  V  V  G  P  *  I  P  G  A  R  G  *  S  R  D  R  R  P  G  F  S  *  R  Y  *  S  G  K  *  I  G  F  R  G  L  C  E  I  T  V  Q  S  G  S  V  C  C  I  G  L  F  C  I  H  H  H  *  K  C  T  S  V  I  K  I  F  K  F  Y  </first_frame>
            <second_frame>  F  S  I  F  A  P  I  S  I  Q  Y  L  L  R  P  M  S  K  E  G  S  R  R  G  V  K  W  S  W  T  S  A  F  V  G  A  A  A  A  A  A  T  V  M  T  L  S  S  K  P  R  D  P  D  F  H  L  I  S  I  D  L  T  S  F  K  L  N  F  P  V  V  D  A  E  L  I  L  T  V  H  V  T  N  P  N  V  T  S  I  N  Y  S  S  T  E  M  S  I  F  Y  S  G  D  H  L  G  S  A  R  V  K  A  G  S  Q  P  P  R  S  C  Q  V  L  R  L  P  A  R  L  S  G  L  Q  L  A  H  H  G  K  E  F  V  A  D  V  A  K  R  E  M  L  L  D  A  T  V  D  I  E  G  F  A  K  V  M  W  W  D  H  K  F  R  V  H  V  D  S  H  V  T  V  D  P  V  F  L  D  V  I  D  Q  E  N  K  S  A  L  E  V  F  V  K  *  R  F  S  P  V  Q  C  V  V  S  V  Y  F  V  F  I  T  T  K  N  V  L  Q  *  L  K  Y  L  S  S  I </second_frame>
            <third_frame>   S  P  F  L  P  Q  S  V  F  S  I  F  S  D  Q  *  A  K  K  E  V  E  E  E  *  N  G  A  G  P  P  P  S  S  V  P  P  L  P  Q  Q  R  *  *  H  S  L  R  S  H  G  I  L  I  F  I  S  S  P  S  I  S  L  P  S  S  S  I  S  P  S  *  T  R  N  S  S  S  P  F  T  *  L  T  L  T  L  L  Q  S  T  T  P  Q  Q  K  C  R  F  S  T  P  A  I  T  S  V  Q  L  V  *  K  P  D  L  S  R  R  V  P  V  R  Y  S  V  F  R  R  G  *  A  D  F  N  L  H  I  T  G  R  N  S  S  P  M  *  R  R  G  R  C  C  W  M  L  R  W  I  *  K  V  L  R  R  *  C  G  G  T  I  N  S  G  C  T  W  I  V  T  *  P  *  T  R  F  F  L  T  L  L  I  R  K  I  N  R  L  *  R  S  L  *  N  N  G  S  V  R  F  S  V  L  Y  R  F  I  L  Y  S  S  P  L  K  M  Y  F  S  N  *  N  I  *  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86212" stop="86823"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSIFAPISIQYLLRPMSKEGSRRGVKWSWTSAFVGAAAAAATVMTLSSKPRDPDFHLISIDLTSFKLNFPVVDAELILTVHVTNPNVTSINYSSTEMSIFYSGDHLGSARVKAGSQPPRSCQVLRLPARLSGLQLAHHGKEFVADVAKREMLLDATVDIEGFAKVMWWDHKFRVHVDSHVTVDPVFLDVIDQENKSALEVFVK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="89981" PGL_stop="97683"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89981" e_stop="90098"/>
            <exon e_start="91302" e_stop="91350"/>
            <exon e_start="94358" e_stop="94449"/>
            <exon e_start="94556" e_stop="94707"/>
            <exon e_start="94830" e_stop="94876"/>
            <exon e_start="94976" e_stop="95009"/>
            <exon e_start="95269" e_stop="95435"/>
            <exon e_start="95888" e_stop="95984"/>
            <exon e_start="96084" e_stop="96441"/>
            <exon e_start="97653" e_stop="97683"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.285" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.840" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.809" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.378" acc_prob="0.000" e_score="0.980"/>
          <exon-only e_score="0.613"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89981" e_stop="90098" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.285">
            <gDNA_intron_boundary i_start="90099" i_stop="91301" i_length="1203"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91302" e_stop="91350" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.840">
            <gDNA_intron_boundary i_start="91351" i_stop="94357" i_length="3007"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94358" e_stop="94449" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="94450" i_stop="94555" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="94556" e_stop="94707" e_length="152"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.953">
            <gDNA_intron_boundary i_start="94708" i_stop="94829" i_length="122"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="94830" e_stop="94876" e_length="47"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.920">
            <gDNA_intron_boundary i_start="94877" i_stop="94975" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="94976" e_stop="95009" e_length="34"/>
          </exon>
          <intron i_serial="6" don_prob="0.979" acc_prob="0.809">
            <gDNA_intron_boundary i_start="95010" i_stop="95268" i_length="259"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="95269" e_stop="95435" e_length="167"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="95436" i_stop="95887" i_length="452"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="95888" e_stop="95984" e_length="97"/>
          </exon>
          <intron i_serial="8" don_prob="0.961" acc_prob="0.997">
            <gDNA_intron_boundary i_start="95985" i_stop="96083" i_length="99"/>
          </intron>
          <exon e_serial="9" e_score="0.980">
            <gDNA_exon_boundary e_start="96084" e_stop="96441" e_length="358"/>
          </exon>
          <intron i_serial="9" don_prob="0.378" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96442" i_stop="97652" i_length="1211"/>
          </intron>
          <exon e_serial="10" e_score="0.613">
            <gDNA_exon_boundary e_start="97653" e_stop="97683" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89981" stop="90098"/>
              <exon start="91302" stop="91350"/>
              <exon start="94358" stop="94449"/>
              <exon start="94556" stop="94707"/>
              <exon start="94830" stop="94876"/>
              <exon start="94976" stop="95009"/>
              <exon start="95269" stop="95435"/>
              <exon start="95888" stop="95984"/>
              <exon start="96084" stop="96173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7323-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89990" stop="90098"/>
              <exon start="91302" stop="91350"/>
              <exon start="94358" stop="94449"/>
              <exon start="94556" stop="94707"/>
              <exon start="94830" stop="94876"/>
              <exon start="94976" stop="95009"/>
              <exon start="95269" stop="95435"/>
              <exon start="95888" stop="95984"/>
              <exon start="96084" stop="96441"/>
              <exon start="97653" stop="97683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89994" stop="90098"/>
              <exon start="91302" stop="91350"/>
              <exon start="94358" stop="94449"/>
              <exon start="94556" stop="94679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1692" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATAGTGTAAGCTTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAG : ATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAG : GAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAG : GATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCG : GTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAG : GTATTCCAGACAAAATATGCAAAAATTGGAGTTG : CAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGATCACTGGAGGAGGGTGATGCAAGGACACGCTGGTGCTAATGTG : GTACCTTTAGTGGCGTCAAACCGCATTGGAAAGGAGATAATTGAGACAGAGCATGGGAATAGTGAGATAACATTCTACGGCTACTCTTTCATAGCAG : GCCCCACTGGGGAGTTGGTTGCAGCTGCCGGTGATAAAGAGGAAGCTGTTCTTGTAGCTCAGTTTGATCTGGACAAAATCAAGTCCAAAAGGCATGGTTGGGGGGTGTATCGTGATCGACGTCCTGATTTATATAAGGTTCTTTTGACGCTAGATGGCAGCAACCCAGTCAAGTGATTCAAGATGATCTAAGTACTGCAGATTCTCCTGCCTTTTTTTTTAAAAATTATAAGAATAAAAATATGAGGACTCAAATGAGAAATTTGTATTTGAGTTTTGTTGTAATGTAACTCGTTAATTTCTGTAATCTGCTGCATTCTACTTTTTATGTAAGGCAAAATTTGTTGAGTTTGAATCCT : TGACTATAAGAAAATGGACCTCGAGCCTAAT</gDNA_template>
            <first_frame> S  *  C  K  L  Q  R  A  Q  K  W  R  R  R  I  D  *  S  P  L  L  L  C  S  S  P  V  P  T  M  S  P  P  T  S  L  P  P  R   : D  W  L  E  L  L  I  R  R  V  Q  I  S  S  S  Y  R :   S  C  S  R  A  I  T  F  V  K  H  K  R  R  S  S  F  I  E  Q  N  H  I  R  A  I  Q  P  L  L   : G  C  R  I  L  Q  R  S  L  E  *  L  F  Q  L  V  S  L  K  R  Q  I  M  R  I  T  I  L  W  L  *  L  M  L  M  A  Q  I  L  D  F  T  G  S  P  I  F  L  M  D  P  :  V  I  R  K  S  I  T  S  I  P  V  T  L  V  L  R :   Y  S  R  Q  N  M  Q  K  L  E  L  :  Q  F  A  G  I  S  G  F  L  R  L  L  E  L  W  H  F  K  V  Q  K  Y  C  S  T  L  L  Q  L  V  L  N  L  K  M  M  D  L  I  L  G  I  T  G  G  G  *  C  K  D  T  L  V  L  M  W :   Y  L  *  W  R  Q  T  A  L  E  R  R  *  L  R  Q  S  M  G  I  V  R  *  H  S  T  A  T  L  S  *  Q  :  A  P  L  G  S  W  L  Q  L  P  V  I  K  R  K  L  F  L  *  L  S  L  I  W  T  K  S  S  P  K  G  M  V  G  G  C  I  V  I  D  V  L  I  Y  I  R  F  F  *  R  *  M  A  A  T  Q  S  S  D  S  R  *  S  K  Y  C  R  F  S  C  L  F  F  *  K  L  *  E  *  K  Y  E  D  S  N  E  K  F  V  F  E  F  C  C  N  V  T  R  *  F  L  *  S  A  A  F  Y  F  L  C  K  A  K  F  V  E  F  E  S   : L  T  I  R  K  W  T  S  S  L   </first_frame>
            <second_frame>  H  S  V  S  F  K  E  P  K  N  G  G  E  E  S  I  S  H  R  C  C  F  A  V  R  L  Y  R  R  C  L  H  Q  R  R  Y  R  R  E  :  I  G  *  S  C  S  S  E  G  C  K  Y  H  P  H  T   : G  V  V  R  G  L  L  L  L  S  S  T  K  G  G  V  L  S  S  S  K  T  I  S  G  P  S  N  H  C  *  :  D  A  E  S  C  K  G  A  W  S  S  Y  S  S  *  F  L  *  R  G  K  *  C  A  L  Q  F  C  G  Y  N  *  C  *  W  H  R  S  W  T  L  Q  E  V  P  Y  S  *  W  T  R :   L  S  G  K  V  L  L  Q  S  R  *  H  W  F  *   : G  I  P  D  K  I  C  K  N  W  S  C :   N  L  L  G  S  V  V  S  *  G  C  S  S  Y  G  T  S  R  C  R  S  I  V  L  P  Y  C  N  W  F  *  T  S  R  *  W  T  *  F  S  G  S  L  E  E  G  D  A  R  T  R  W  C  *  C   : G  T  F  S  G  V  K  P  H  W  K  G  D  N  *  D  R  A  W  E  *  *  D  N  I  L  R  L  L  F  H  S  R :   P  H  W  G  V  G  C  S  C  R  *  *  R  G  S  C  S  C  S  S  V  *  S  G  Q  N  Q  V  Q  K  A  W  L  G  G  V  S  *  S  T  S  *  F  I  *  G  S  F  D  A  R  W  Q  Q  P  S  Q  V  I  Q  D  D  L  S  T  A  D  S  P  A  F  F  F  K  N  Y  K  N  K  N  M  R  T  Q  M  R  N  L  Y  L  S  F  V  V  M  *  L  V  N  F  C  N  L  L  H  S  T  F  Y  V  R  Q  N  L  L  S  L  N  P  :  *  L  *  E  N  G  P  R  A  *  </second_frame>
            <third_frame>   I  V  *  A  S  K  S  P  K  M  A  E  K  N  R  L  V  T  V  A  A  L  Q  F  A  C  T  D  D  V  S  T  N  V  A  T  A  E  R :   L  V  R  A  A  H  Q  K  G  A  N  I  I  L  I  Q  :  E  L  F  E  G  Y  Y  F  C  Q  A  Q  K  E  E  F  F  H  R  A  K  P  Y  P  G  H  P  T  I  V  R :   M  Q  N  L  A  K  E  L  G  V  V  I  P  V  S  F  F  E  E  A  N  N  A  H  Y  N  S  V  A  I  I  D  A  D  G  T  D  L  G  L  Y  R  K  S  H  I  P  D  G  P   : G  Y  Q  E  K  Y  Y  F  N  P  G  D  T  G  F  K  :  V  F  Q  T  K  Y  A  K  I  G  V   : A  I  C  W  D  Q  W  F  P  E  A  A  R  A  M  A  L  Q  G  A  E  V  L  F  Y  P  T  A  I  G  S  E  P  Q  D  D  G  L  D  S  R  D  H  W  R  R  V  M  Q  G  H  A  G  A  N  V  :  V  P  L  V  A  S  N  R  I  G  K  E  I  I  E  T  E  H  G  N  S  E  I  T  F  Y  G  Y  S  F  I  A   : G  P  T  G  E  L  V  A  A  A  G  D  K  E  E  A  V  L  V  A  Q  F  D  L  D  K  I  K  S  K  R  H  G  W  G  V  Y  R  D  R  R  P  D  L  Y  K  V  L  L  T  L  D  G  S  N  P  V  K  *  F  K  M  I  *  V  L  Q  I  L  L  P  F  F  L  K  I  I  R  I  K  I  *  G  L  K  *  E  I  C  I  *  V  L  L  *  C  N  S  L  I  S  V  I  C  C  I  L  L  F  M  *  G  K  I  C  *  V  *  I  L :   D  Y  K  K  M  D  L  E  P  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89992" stop="90098"/>
                    <exon start="91302" stop="91350"/>
                    <exon start="94358" stop="94449"/>
                    <exon start="94556" stop="94707"/>
                    <exon start="94830" stop="94876"/>
                    <exon start="94976" stop="95009"/>
                    <exon start="95269" stop="95435"/>
                    <exon start="95888" stop="95984"/>
                    <exon start="96084" stop="96259"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>918</number_coding_nucleotides>
                  <number_encoded_amino_acids>306</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASKSPKMAEKNRLVTVAALQFACTDDVSTNVATAERLVRAAHQKGANIILIQELFEGYYFCQAQKEEFFHRAKPYPGHPTIVRMQNLAKELGVVIPVSFFEEANNAHYNSVAIIDADGTDLGLYRKSHIPDGPGYQEKYYFNPGDTGFKVFQTKYAKIGVAICWDQWFPEAARAMALQGAEVLFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGNSEITFYGYSFIAGPTGELVAAAGDKEEAVLVAQFDLDKIKSKRHGWGVYRDRRPDLYKVLLTLDGSNPVK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="117079" PGL_stop="111003"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117079" e_stop="117041"/>
            <exon e_start="113464" e_stop="113340"/>
            <exon e_start="112830" e_stop="112792"/>
            <exon e_start="112094" e_stop="111689"/>
            <exon e_start="111313" e_stop="111299"/>
            <exon e_start="111037" e_stop="111003"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.456" acc_prob="0.490" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.533"/>
          <exon-only e_score="0.629"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="117079" e_stop="117041" e_length="39"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="117040" i_stop="113465" i_length="3576"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113464" e_stop="113340" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="113339" i_stop="112831" i_length="509"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="112830" e_stop="112792" e_length="39"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.947">
            <gDNA_intron_boundary i_start="112791" i_stop="112095" i_length="697"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="112094" e_stop="111689" e_length="406"/>
          </exon>
          <intron i_serial="4" don_prob="0.456" acc_prob="0.490">
            <gDNA_intron_boundary i_start="111688" i_stop="111314" i_length="375"/>
          </intron>
          <exon e_serial="5" e_score="0.533">
            <gDNA_exon_boundary e_start="111313" e_stop="111299" e_length="15"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="111298" i_stop="111038" i_length="261"/>
          </intron>
          <exon e_serial="6" e_score="0.629">
            <gDNA_exon_boundary e_start="111037" e_stop="111003" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117079" stop="117041"/>
              <exon start="113464" stop="113340"/>
              <exon start="112830" stop="112792"/>
              <exon start="112094" stop="111689"/>
              <exon start="111313" stop="111299"/>
              <exon start="111037" stop="111003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7327-3" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117079" stop="117041"/>
              <exon start="113464" stop="113340"/>
              <exon start="112830" stop="112792"/>
              <exon start="112094" stop="111690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7327-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAGCGTCATTTGTGATTCACACACCGAAACAACAGAG : GAATATTTGAGAAGAAATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAG : AAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAG : GGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGACATGATCACCTC : ATTTTGATTAGTCTG : TAATAGGGGTCTTTACAGAAAAGAAATTACAAAAT</gDNA_template>
            <first_frame> Q  S  V  I  C  D  S  H  T  E  T  T  E  :  E  Y  L  R  R  N  L  R  W  Q  P  E  M  L  S  D  M  F  L  V  G  S  L  A  V  A  R  Y  *  V  R  R  K  K  L  L  K  M  S  T  S  R :   K  W  R  K  R  S  W  R  S  L  L  A  R :   V  P  S  Q  E  N  K  L  Q  V  A  Q  G  Q  Y  L  M  L  H  R  V  P  R  P  L  Q  H  P  E  Y  Q  M  T  N  T  A  T  M  V  F  *  L  D  *  S  L  V  L  V  L  W  V  G  T  *  C  Q  R  T  R  R  R  K  K  Y  R  I  E  V  S  P  Y  *  R  T  P  *  K  T  K  K  *  S  K  L  V  F  R  K  Q  Y  P  N  L  F  S  F  C  M  V  F  H  Q  L  D  V  Q  K  S  P  E  L  G  V  H  F  T  T  A  E  L  D  D  V  L  Y  V  L  L  L  *  H  D  H  L  :  I  L  I  S  L  :  *  *  G  S  L  Q  K  R  N  Y  K   </first_frame>
            <second_frame>  K  A  S  F  V  I  H  T  P  K  Q  Q  R :   N  I  *  E  E  I  *  D  G  S  Q  K  C  F  Q  I  C  F  S  *  A  L  *  Q  W  Q  G  I  K  *  G  G  K  S  C  *  K  C  L  H  Q   : E  N  G  E  R  E  A  G  E  A  C  S  P   : G  S  Q  A  R  R  T  S  C  R  W  L  R  V  S  T  *  C  C  I  E  C  P  G  L  F  N  I  Q  S  I  R  *  Q  I  P  Q  L  W  C  S  S  W  T  D  H  W  C  W  C  F  G  L  V  P  N  V  K  G  Q  E  D  G  R  S  T  G  L  K  Y  L  L  I  S  E  L  L  K  R  P  K  N  K  A  N  S  C  F  V  N  S  I  L  I  S  F  P  S  V  W  F  S  T  S  W  M  Y  K  N  L  Q  N  W  A  Y  I  L  Q  L  L  N  W  M  T  F  Y  M  C  C  F  F  D  M  I  T  S :   F  *  L  V  C :   N  R  G  L  Y  R  K  E  I  T  K  </second_frame>
            <third_frame>   K  R  H  L  *  F  T  H  R  N  N  R   : G  I  F  E  K  K  F  E  M  A  A  R  N  A  F  R  Y  V  S  R  R  L  S  S  S  G  K  V  L  S  E  E  E  K  A  A  E  N  V  Y  I  K  :  K  M  E  K  E  K  L  E  K  L  A  R  Q  :  G  P  K  P  G  E  Q  A  A  G  G  S  G  S  V  P  D  A  A  S  S  A  Q  A  S  S  T  S  R  V  S  D  D  K  Y  R  N  Y  G  V  L  A  G  L  I  T  G  V  G  A  L  G  W  Y  L  M  S  K  D  K  K  T  E  E  V  Q  D  *  S  I  S  L  L  A  N  S  L  K  D  Q  K  I  K  Q  T  R  V  S  *  T  V  S  *  S  L  F  L  L  Y  G  F  P  P  A  G  C  T  K  I  S  R  T  G  R  T  F  Y  N  C  *  T  G  *  R  S  I  C  V  A  S  L  T  *  S  P   : H  F  D  *  S   : V  I  G  V  F  T  E  K  K  L  Q  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117062" stop="117041"/>
                    <exon start="113464" stop="113340"/>
                    <exon start="112830" stop="112792"/>
                    <exon start="112094" stop="111891"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTHRNNRGIFEKKFEMAARNAFRYVSRRLSSSGKVLSEEEKAAENVYIKKMEKEKLEKLARQGPKPGEQAAGGSGSVPDAASSAQASSTSRVSDDKYRNYGVLAGLITGVGALGWYLMSKDKKTEEVQD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111996" stop="111689"/>
                    <exon start="111313" stop="111307"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIPQLWCSSWTDHWCWCFGLVPNVKGQEDGRSTGLKYLLISELLKRPKNKANSCFVNSILISFPSVWFSTSWMYKNLQNWAYILQLLNWMTFYMCCFFDMITSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="135410" PGL_stop="132335"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="135410" e_stop="135188"/>
            <exon e_start="134127" e_stop="134009"/>
            <exon e_start="132677" e_stop="132335"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="135410" e_stop="135188" e_length="223"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="135187" i_stop="134128" i_length="1060"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="134127" e_stop="134009" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="134008" i_stop="132678" i_length="1331"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="132677" e_stop="132335" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135410" stop="135188"/>
              <exon start="134127" stop="134009"/>
              <exon start="132677" stop="132335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7324" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAATGGCGGAGATAGAGAAGCAGAACAAGGAGAAGGAGAAAGTAGTAGCAGAAACAACAGTGCAAATCGATCAAGAGGGTCTTCCCAAGACTATTGTACGTAGGCTTGTGAAGGAAAAGCTTTCTCAGCTATCTACAGATACTGATATCTCACTTCTTCGTGACTCGCTTCTTGCTTTCTCTGAAAGTGCTCGAATTTTCATCCATTACCTCTCCGCAAC : TGCTAATGACATATGCAAGGAGTCTAAGAGGCAAACGATAAATGCAGAAGATGTGTTCAAGGCCCTTGAAGAGATTGAGTTTCCAGAGCTCATTGAGCCTCTCAAAGCTTCTCTTGAGG : GATTCAGAGAGAAGAACTCTAAAAGGAAGTCAACGTCATCTAAGTCCCCAGAATCTAACAAAAAGGCCAAGCTGAAAGAGCCTGTGGAAAATGGGAAGGGTAAGATGAAAGAACAACCCTCGGATAACGAAAATGAAGATGCACAAGCTGAAGAGGAAGTCAATGAAGTTGAGGATAGAGTTGATGATTAACGAGATTATTGTTTGCGCTTGCCTTCTTCGTTAGACATTTTACTCGTGCCTTGTTAACCCCCCCAGAAAAATGTAATCTTATCTTGGATGCAAAGTTAACAAACAGTTTGTAGAGCTTTATTCTGGAGTAAAATGAAGTTCTTTGGGAATTG</gDNA_template>
            <first_frame> E  K  W  R  R  *  R  S  R  T  R  R  R  R  K  *  *  Q  K  Q  Q  C  K  S  I  K  R  V  F  P  R  L  L  Y  V  G  L  *  R  K  S  F  L  S  Y  L  Q  I  L  I  S  H  F  F  V  T  R  F  L  L  S  L  K  V  L  E  F  S  S  I  T  S  P  Q   : L  L  M  T  Y  A  R  S  L  R  G  K  R  *  M  Q  K  M  C  S  R  P  L  K  R  L  S  F  Q  S  S  L  S  L  S  K  L  L  L  R  :  D  S  E  R  R  T  L  K  G  S  Q  R  H  L  S  P  Q  N  L  T  K  R  P  S  *  K  S  L  W  K  M  G  R  V  R  *  K  N  N  P  R  I  T  K  M  K  M  H  K  L  K  R  K  S  M  K  L  R  I  E  L  M  I  N  E  I  I  V  C  A  C  L  L  R  *  T  F  Y  S  C  L  V  N  P  P  R  K  M  *  S  Y  L  G  C  K  V  N  K  Q  F  V  E  L  Y  S  G  V  K  *  S  S  L  G  I  </first_frame>
            <second_frame>  K  N  G  G  D  R  E  A  E  Q  G  E  G  E  S  S  S  R  N  N  S  A  N  R  S  R  G  S  S  Q  D  Y  C  T  *  A  C  E  G  K  A  F  S  A  I  Y  R  Y  *  Y  L  T  S  S  *  L  A  S  C  F  L  *  K  C  S  N  F  H  P  L  P  L  R  N  :  C  *  *  H  M  Q  G  V  *  E  A  N  D  K  C  R  R  C  V  Q  G  P  *  R  D  *  V  S  R  A  H  *  A  S  Q  S  F  S  *  G :   I  Q  R  E  E  L  *  K  E  V  N  V  I  *  V  P  R  I  *  Q  K  G  Q  A  E  R  A  C  G  K  W  E  G  *  D  E  R  T  T  L  G  *  R  K  *  R  C  T  S  *  R  G  S  Q  *  S  *  G  *  S  *  *  L  T  R  L  L  F  A  L  A  F  F  V  R  H  F  T  R  A  L  L  T  P  P  E  K  C  N  L  I  L  D  A  K  L  T  N  S  L  *  S  F  I  L  E  *  N  E  V  L  W  E  L </second_frame>
            <third_frame>   K  M  A  E  I  E  K  Q  N  K  E  K  E  K  V  V  A  E  T  T  V  Q  I  D  Q  E  G  L  P  K  T  I  V  R  R  L  V  K  E  K  L  S  Q  L  S  T  D  T  D  I  S  L  L  R  D  S  L  L  A  F  S  E  S  A  R  I  F  I  H  Y  L  S  A  T :   A  N  D  I  C  K  E  S  K  R  Q  T  I  N  A  E  D  V  F  K  A  L  E  E  I  E  F  P  E  L  I  E  P  L  K  A  S  L  E   : G  F  R  E  K  N  S  K  R  K  S  T  S  S  K  S  P  E  S  N  K  K  A  K  L  K  E  P  V  E  N  G  K  G  K  M  K  E  Q  P  S  D  N  E  N  E  D  A  Q  A  E  E  E  V  N  E  V  E  D  R  V  D  D  *  R  D  Y  C  L  R  L  P  S  S  L  D  I  L  L  V  P  C  *  P  P  Q  K  N  V  I  L  S  W  M  Q  S  *  Q  T  V  C  R  A  L  F  W  S  K  M  K  F  F  G  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135408" stop="135188"/>
                    <exon start="134127" stop="134009"/>
                    <exon start="132677" stop="132487"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMAEIEKQNKEKEKVVAETTVQIDQEGLPKTIVRRLVKEKLSQLSTDTDISLLRDSLLAFSESARIFIHYLSATANDICKESKRQTINAEDVFKALEEIEFPELIEPLKASLEGFREKNSKRKSTSSKSPESNKKAKLKEPVENGKGKMKEQPSDNENEDAQAEEEVNEVEDRVDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 105 chains have been computed
$ 
$ memory statistics:
$ 260512 bytes spliced alignments in total
$ 20 spliced alignments have been stored
$ 13025 bytes was the average size of a spliced alignment
$ 20016 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1668 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 107 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 08:40:47
-->
