<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 05:45:05"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403238" ref_strand="+" ref_description="SGN-E403238 [PPC-10-C23]">
      <seq>ggctgcttttgctcctgcaatatcttcaaacataccatgggctgcagtactaggaaatcatgaccaggaatctacactctcaagggaaggcgtgatgaaacatattgttggcatgaaaagtactttatctcagttgaatcctcctgacgttcctgatattgatggttttgggaattataatctggaagtccatgggattgagggttccgagctgactaataagtccgttctcaatctgtatttccttgacagtggagattactctactgttccatccatccctggttatggttggattcaaccctctcaacagttctggtttcgacgtacctctaggaagcttaagaaaacttacatggacacttcaaatgctatgaaggctcctgctccaggccttgcttactttcatattccacttcgtgaatatgcaagctttgactcatcaaacttcacaggggttagacaagaaggcggcataagctctgcttcaataaattcaggtttcttcaccactatggtggaagctggtgatgtaaaggcagcattcgctggccatgatcacttaaatgatttttgtggcaagttgatggacataaatctttgctatgctggaggatttggatatcacgcttatgggaagactggatggtcaaggagggcaaggatggtagtagcatctttggagaaaacagggaaaggagggtggggagatgtcaaatctattaaaacatggaagcgacttgatgatgaacatctttacaccatcgatactcaggtgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="1" stop="1406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="198" g_stop="543" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="544" i_stop="673" i_length="130">
            <donor d_prob="0.968" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="674" g_stop="1106" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="782" r_length="436" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E403238" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="198" e_stop="543"/>
          <exon e_start="674" e_stop="1106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGCTTTTGCTCCTGCAATATCTTCAAACATACCATGGGCTGCAGTACTAGGAAATCATGACCAGGAATCTACACTCTCAAGGGAAGGCGTGATGAAACATATCATTGGCATGAAAAGTACTTTATCTCAATTGAATCCTCCCGACGTTCCTGATATTGATGGTTTTGGGAATTATAATCTGGAAGTCCATGGGACTGAGGGTTCCGAGCTGACTAATAAGTCCGTTCTCAATCTGTATTTCCTTGACAGTGGAGATTACTCTACTGTTCCATCCATCCCTGGTTATGGTTGGATTAAACCCTCTCAACAGTTCTGGTTTCAACGCACCTCTAGGAAGCTTAAGGTGCCACATTTACTGTTTTGGTGCTATTATATTAATCGATTGTCTCTTCTTGCTCAAAAAATATATATTAGTCACTGTATCTCTTAACTTGTGAGCATTGACACTAACTCAATTAATCTTTCAAATGCAGAAAACTTACCTGCACGATTCAAATGCTAGGAAGGCTCCTGCTCCAGGACTTGCTTACTTTCATATTCCACTTCCTGAATATGCAAGTTTTGACTCATCAAACTTCACAGGGGTTAGACAAGAA---GGCATAAGCTCTGCTTCAATAAATTCAGGTTTCTTCACCACTATGGTGGAAAGTGGTGATGTAAAGGCAGCATTTGCTGGCCATGATCACATAAATGATTTTTGTGGCAAGTTGATGGACATAAATCTTTGCTATGCTGGAGGATTTGGATATCACGCTTATGGGAAGGCTGGATGGTCAAGGAGGGCAAGGATGGTAGTAGCATCTTTGGAAAAAACAGGGAAAGGAGGGTGGGGAGATGTCAAATCTATTAAAACATGGAAGCGACTTGATGATGAACATCTTACAACCATCGATACTCAGGTTCTTT</genome_strand>
        <mrna_strand>GGCTGCTTTTGCTCCTGCAATATCTTCAAACATACCATGGGCTGCAGTACTAGGAAATCATGACCAGGAATCTACACTCTCAAGGGAAGGCGTGATGAAACATATTGTTGGCATGAAAAGTACTTTATCTCAGTTGAATCCTCCTGACGTTCCTGATATTGATGGTTTTGGGAATTATAATCTGGAAGTCCATGGGATTGAGGGTTCCGAGCTGACTAATAAGTCCGTTCTCAATCTGTATTTCCTTGACAGTGGAGATTACTCTACTGTTCCATCCATCCCTGGTTATGGTTGGATTCAACCCTCTCAACAGTTCTGGTTTCGACGTACCTCTAGGAAGCTTAAG..................................................................................................................................AAAACTTACATGGACACTTCAAATGCTATGAAGGCTCCTGCTCCAGGCCTTGCTTACTTTCATATTCCACTTCGTGAATATGCAAGCTTTGACTCATCAAACTTCACAGGGGTTAGACAAGAAGGCGGCATAAGCTCTGCTTCAATAAATTCAGGTTTCTTCACCACTATGGTGGAAGCTGGTGATGTAAAGGCAGCATTCGCTGGCCATGATCACTTAAATGATTTTTGTGGCAAGTTGATGGACATAAATCTTTGCTATGCTGGAGGATTTGGATATCACGCTTATGGGAAGACTGGATGGTCAAGGAGGGCAAGGATGGTAGTAGCATCTTTGGAGAAAACAGGGAAAGGAGGGTGGGGAGATGTCAAATCTATTAAAACATGGAAGCGACTTGATGATGAACATCTTTACACCATCGATACTCAGGTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466082" ref_strand="+" ref_description="SGN-E466082 [cPRO-23-K15]">
      <seq>caaacataccatgggctgcagtactaggaaatcatgaccagttattctacactctcaagggaaggcgtgatgaaacatattgttggcatgaaaagtactttatctcagttgaatcctcctgacgttcctgatattgatggttttgggaattataatctggaagtccatgggattgagggttccgagctgactaataagtccgttctcaatctgtatttccttgacagtggagattactctactgttccatccatccctggttatggttggattcaaccctctcaacagttctggtttcgacgtacctctaggaagcttaagaaaacttacatggacacttcaaatgctatgaaggctcctgctccaggccttgcttactttcatattccacttcgtgaatatgcaagctttgactcatcaaacttcacaggggttagacaagaaggcggcataagctctgcttcaataaattcaggtttcttcaccactatggtggaagctggtgatgtaaaggcagcattcgctggccatgatcacttaaatgatttttgtggcaagttgatggacataaatctttgctatgctggaggatttggatatcacgcttatgggaagactggatggtcaaggagggcaaggatggtagtagcatctttggagaaaacggnaaaagagggtggggagatgtcaaatctattaaacatggaagcgacttgatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="1" stop="1374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="224" g_stop="543" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="544" i_stop="673" i_length="130">
            <donor d_prob="0.968" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="674" g_stop="1074" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="723" r_length="402" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E466082" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="224" e_stop="543"/>
          <exon e_start="674" e_stop="1074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACATACCATGGGCTGCAGTACTAGGAAATCATGACCAG-GAATCTACACTCTCAAGGGAAGGCGTGATGAAACATATCATTGGCATGAAAAGTACTTTATCTCAATTGAATCCTCCCGACGTTCCTGATATTGATGGTTTTGGGAATTATAATCTGGAAGTCCATGGGACTGAGGGTTCCGAGCTGACTAATAAGTCCGTTCTCAATCTGTATTTCCTTGACAGTGGAGATTACTCTACTGTTCCATCCATCCCTGGTTATGGTTGGATTAAACCCTCTCAACAGTTCTGGTTTCAACGCACCTCTAGGAAGCTTAAGGTGCCACATTTACTGTTTTGGTGCTATTATATTAATCGATTGTCTCTTCTTGCTCAAAAAATATATATTAGTCACTGTATCTCTTAACTTGTGAGCATTGACACTAACTCAATTAATCTTTCAAATGCAGAAAACTTACCTGCACGATTCAAATGCTAGGAAGGCTCCTGCTCCAGGACTTGCTTACTTTCATATTCCACTTCCTGAATATGCAAGTTTTGACTCATCAAACTTCACAGGGGTTAGACAAGAA---GGCATAAGCTCTGCTTCAATAAATTCAGGTTTCTTCACCACTATGGTGGAAAGTGGTGATGTAAAGGCAGCATTTGCTGGCCATGATCACATAAATGATTTTTGTGGCAAGTTGATGGACATAAATCTTTGCTATGCTGGAGGATTTGGATATCACGCTTATGGGAAGGCTGGATGGTCAAGGAGGGCAAGGATGGTAGTAGCATCTTTGGAAAAAACAGGGAAAGGAGGGTGGGGAGATGTCAAATCTATTAAAACATGGAAGCGACTTGATGATGA</genome_strand>
        <mrna_strand>CAAACATACCATGGGCTGCAGTACTAGGAAATCATGACCAGTTATTCTACACTCTCAAGGGAAGGCGTGATGAAACATATTGTTGGCATGAAAAGTACTTTATCTCAGTTGAATCCTCCTGACGTTCCTGATATTGATGGTTTTGGGAATTATAATCTGGAAGTCCATGGGATTGAGGGTTCCGAGCTGACTAATAAGTCCGTTCTCAATCTGTATTTCCTTGACAGTGGAGATTACTCTACTGTTCCATCCATCCCTGGTTATGGTTGGATTCAACCCTCTCAACAGTTCTGGTTTCGACGTACCTCTAGGAAGCTTAAG..................................................................................................................................AAAACTTACATGGACACTTCAAATGCTATGAAGGCTCCTGCTCCAGGCCTTGCTTACTTTCATATTCCACTTCGTGAATATGCAAGCTTTGACTCATCAAACTTCACAGGGGTTAGACAAGAAGGCGGCATAAGCTCTGCTTCAATAAATTCAGGTTTCTTCACCACTATGGTGGAAGCTGGTGATGTAAAGGCAGCATTCGCTGGCCATGATCACTTAAATGATTTTTGTGGCAAGTTGATGGACATAAATCTTTGCTATGCTGGAGGATTTGGATATCACGCTTATGGGAAGACTGGATGGTCAAGGAGGGCAAGGATGGTAGTAGCATCTTTGGAGAAAAC-GGNAAAAGAGGGTGGGGAGATGTCAAATCTATT-AAACATGGAAGCGACTTGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709476" ref_strand="+" ref_description="SGN-E709476 [FA52AF07]">
      <seq>gatgaaacatatcattggcatccttaaaactttatctcaattgaatcctcccgacgttcctgatattgatggttttgggaattataatctggaaccccatgggactgagggttccgagctgactaataagtccgttctcaatctgtatttccttgacagtggagattactctactgttccatccatccctggttatggttggattaaaccctctcaacagttctggtttcaacgcacctctaggaagcttaagaaaacttacctgcacgattcaaatgctaggaaggctcctgctccaggacttgcttactttcatattccacttcctgaatatgcaagttttgactcatcaaacttcacaggggttagacaagaaggcataagctctgcttcaataaattcaggtttcttcaccactatggtggaaagtggtgatgtaaaggcagcatttgctggccatgatcacataaatgatttttgtggcaagttgatggacataaatctttgctatgctggaggatttggatatcacgcttatgggaaggctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="1" stop="1270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="291" g_stop="543" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="544" i_stop="673" i_length="130">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="674" g_stop="970" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="550" r_length="297" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E709476" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="291" e_stop="543"/>
          <exon e_start="674" e_stop="970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAAACATATCATTGGCATGAAAAGTACTTTATCTCAATTGAATCCTCCCGACGTTCCTGATATTGATGGTTTTGGGAATTATAATCTGGAAGTCCATGGGACTGAGGGTTCCGAGCTGACTAATAAGTCCGTTCTCAATCTGTATTTCCTTGACAGTGGAGATTACTCTACTGTTCCATCCATCCCTGGTTATGGTTGGATTAAACCCTCTCAACAGTTCTGGTTTCAACGCACCTCTAGGAAGCTTAAGGTGCCACATTTACTGTTTTGGTGCTATTATATTAATCGATTGTCTCTTCTTGCTCAAAAAATATATATTAGTCACTGTATCTCTTAACTTGTGAGCATTGACACTAACTCAATTAATCTTTCAAATGCAGAAAACTTACCTGCACGATTCAAATGCTAGGAAGGCTCCTGCTCCAGGACTTGCTTACTTTCATATTCCACTTCCTGAATATGCAAGTTTTGACTCATCAAACTTCACAGGGGTTAGACAAGAAGGCATAAGCTCTGCTTCAATAAATTCAGGTTTCTTCACCACTATGGTGGAAAGTGGTGATGTAAAGGCAGCATTTGCTGGCCATGATCACATAAATGATTTTTGTGGCAAGTTGATGGACATAAATCTTTGCTATGCTGGAGGATTTGGATATCACGCTTATGGGAAGGCTGGA</genome_strand>
        <mrna_strand>GATGAAACATATCATTGGCATCCTTAAAACTTTATCTCAATTGAATCCTCCCGACGTTCCTGATATTGATGGTTTTGGGAATTATAATCTGGAACCCCATGGGACTGAGGGTTCCGAGCTGACTAATAAGTCCGTTCTCAATCTGTATTTCCTTGACAGTGGAGATTACTCTACTGTTCCATCCATCCCTGGTTATGGTTGGATTAAACCCTCTCAACAGTTCTGGTTTCAACGCACCTCTAGGAAGCTTAAG..................................................................................................................................AAAACTTACCTGCACGATTCAAATGCTAGGAAGGCTCCTGCTCCAGGACTTGCTTACTTTCATATTCCACTTCCTGAATATGCAAGTTTTGACTCATCAAACTTCACAGGGGTTAGACAAGAAGGCATAAGCTCTGCTTCAATAAATTCAGGTTTCTTCACCACTATGGTGGAAAGTGGTGATGTAAAGGCAGCATTTGCTGGCCATGATCACATAAATGATTTTTGTGGCAAGTTGATGGACATAAATCTTTGCTATGCTGGAGGATTTGGATATCACGCTTATGGGAAGGCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588615" ref_strand="+" ref_description="SGN-E588615 [42171]">
      <seq>ctgatattgatggttttgggaattataatctggaagtccatgggattgagggttccgagctgactaataagtccgttctcaatctgtatttccttgacagtggagattactctactgttccatccatccctggttatggttggattcaaccctctcaacagttctggtttcgacgtacctctaggaagcttaagaaaacttacatgcacacttcaaatgctatgaaggctcctgctccaggccttgcttactttcatattccacttcgtgaatatgcgagttttgactcatcaaacttcacaggggttagacaagaaggcggcataagctctgcttcaataaattcaggtttcttcaccactatggtggaagctggtgatgtaaaggcagcattcgttggccatgatcacttaaatgatttttgtggcaagttgatggacataaatctttgctatgctggaggatttggatatcacgcttatgggaagactggatggtcaaggagggcaaggatggtagtagcatctttggagaaaacaggcaaaggagggtggggagatgtcaaatctattaaaacatggaagcgacttgatgatgaacatcttacagccatcgatactcaggtgctttggagcaagaggtctgncggtaaggttccgaaaatgtaacttctcaatctcaggctttgggctgtccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="50" stop="1474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="350" g_stop="543" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="544" i_stop="673" i_length="130">
            <donor d_prob="0.968" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="674" g_stop="1173" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="698" r_length="504" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E588615" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E588615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="350" e_stop="543"/>
          <exon e_start="674" e_stop="1173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATATTGATGGTTTTGGGAATTATAATCTGGAAGTCCATGGGACTGAGGGTTCCGAGCTGACTAATAAGTCCGTTCTCAATCTGTATTTCCTTGACAGTGGAGATTACTCTACTGTTCCATCCATCCCTGGTTATGGTTGGATTAAACCCTCTCAACAGTTCTGGTTTCAACGCACCTCTAGGAAGCTTAAGGTGCCACATTTACTGTTTTGGTGCTATTATATTAATCGATTGTCTCTTCTTGCTCAAAAAATATATATTAGTCACTGTATCTCTTAACTTGTGAGCATTGACACTAACTCAATTAATCTTTCAAATGCAGAAAACTTACCTGCACGATTCAAATGCTAGGAAGGCTCCTGCTCCAGGACTTGCTTACTTTCATATTCCACTTCCTGAATATGCAAGTTTTGACTCATCAAACTTCACAGGGGTTAGACAAGAA---GGCATAAGCTCTGCTTCAATAAATTCAGGTTTCTTCACCACTATGGTGGAAAGTGGTGATGTAAAGGCAGCATTTGCTGGCCATGATCACATAAATGATTTTTGTGGCAAGTTGATGGACATAAATCTTTGCTATGCTGGAGGATTTGGATATCACGCTTATGGGAAGGCTGGATGGTCAAGGAGGGCAAGGATGGTAGTAGCATCTTTGGAAAAAACAGGGAAAGGAGGGTGGGGAGATGTCAAATCTATTAAAACATGGAAGCGACTTGATGATGAACATCTTACAACCATCGATACTCAGGTTCTTTGGAGCAAGAGGTCTGCCGGTAAGGTTCTGAGAATGTAACTTCTC-ATCTCAGGCTTTGGGCTGTCCCA</genome_strand>
        <mrna_strand>CTGATATTGATGGTTTTGGGAATTATAATCTGGAAGTCCATGGGATTGAGGGTTCCGAGCTGACTAATAAGTCCGTTCTCAATCTGTATTTCCTTGACAGTGGAGATTACTCTACTGTTCCATCCATCCCTGGTTATGGTTGGATTCAACCCTCTCAACAGTTCTGGTTTCGACGTACCTCTAGGAAGCTTAAG..................................................................................................................................AAAACTTACATGCACACTTCAAATGCTATGAAGGCTCCTGCTCCAGGCCTTGCTTACTTTCATATTCCACTTCGTGAATATGCGAGTTTTGACTCATCAAACTTCACAGGGGTTAGACAAGAAGGCGGCATAAGCTCTGCTTCAATAAATTCAGGTTTCTTCACCACTATGGTGGAAGCTGGTGATGTAAAGGCAGCATTCGTTGGCCATGATCACTTAAATGATTTTTGTGGCAAGTTGATGGACATAAATCTTTGCTATGCTGGAGGATTTGGATATCACGCTTATGGGAAGACTGGATGGTCAAGGAGGGCAAGGATGGTAGTAGCATCTTTGGAGAAAACAGGCAAAGGAGGGTGGGGAGATGTCAAATCTATTAAAACATGGAAGCGACTTGATGATGAACATCTTACAGCCATCGATACTCAGGTGCTTTGGAGCAAGAGGTCTGNCGGTAAGGTTCCGAAAATGTAACTTCTCAATCTCAGGCTTTGGGCTGTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371246" ref_strand="+" ref_description="SGN-E371246 [TUS-28-P15](-)">
      <seq>cttcaataaattcaggtttcttcccccctatggtggaaagtggtgatgtaaaggcagcatttgctggccatgatcacataaatgatttttgtggcaagttgatggacataaatttttgctatgctggaggatttggatatcacgcttatgggaaggctggatggtcaaggagggcaaggatggtagtagcatctttggaaaaaacagggaaaggagggtggggagatgtcaaatttattaaaacatggaagcgacttgatgatgaacatcttacaaccatcgatactcaggttttttggagcaaaaggtctgccggtgctcgtaaaaaaaagcctatcggtcccccctaaaaaattttattactgaagcatgatcccaaattggtagcaaaagcctatttttcaacttgcatttactggaaaggtttatacttgttgtatgggttatttacttagggtcaaaagttaatgtgtaatgttaaaggtgatgtaggagcaagcaatatatatgtaggtcccattcaaagaatgagataaggacccccttatgtagttaagaaagattgatattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="510" stop="2850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="810" g_stop="1124" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1125" i_stop="2296" i_length="1172">
            <donor d_prob="0.697" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2297" g_stop="2551" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="570" r_length="255" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="571" polyA_stop="607"/>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E371246" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="810" e_stop="1124"/>
          <exon e_start="2297" e_stop="2551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAATAAATTCAGGTTTCTTCACCACTATGGTGGAAAGTGGTGATGTAAAGGCAGCATTTGCTGGCCATGATCACATAAATGATTTTTGTGGCAAGTTGATGGACATAAATCTTTGCTATGCTGGAGGATTTGGATATCACGCTTATGGGAAGGCTGGATGGTCAAGGAGGGCAAGGATGGTAGTAGCATCTTTGGAAAAAACAGGGAAAGGAGGGTGGGGAGATGTCAAATCTATTAAAACATGGAAGCGACTTGATGATGAACATCTTACAACCATCGATACTCAGGTTCTTTGGAGCAAGAGGTCTGCCGGTAAGGTTCTGAGAATGTAACTTCTCATCTCAGGCTTTGGGCTGTCCCAAGTAATATTATAATTCTAATGTTACTTTTCAGTTAATTTAGTTGGATCGATTCGTAAAACTGTTTGGTACTGGTGTTCAGTCAGTGTGTGCTGATATTCTCTATTGCTCTTTCATATGAGCTATGTTCTAAATGCAAACTGAGCATTAGATCTTTTAGTATGCTGCATGTGGTTTAGTGAAGAAATTGTGTTCAATAAACATTGTATATGCTCCTCAGCACCCTTACGTCACTTTAAGGACCGACTCTATGTATATAACTATGAAAGTAACTAAGTATCTGCATATGCTCTTGTCGACTATCTGTATTTTTCGTTTTCCAAACTGATACATAGAGGTATGTTACTCAGTAGCTATCAAAGGATTAAAGAGTAGAAATTCATTCAAGTACTTAGTTTAAATTAACCATGTGACCTTGTGGCATTCAAGCATGTTCTATTTGTTTTTTTAATGTGAGAGGAGGAGGCAGCATCTGCATGATTGGTGTATTTGGTTTTCCTTGGAAAAGCTTCTTGTTTTAGTAGGAGCTGCTATTATATATGTTGTCTATCATCTTCAGTACATAGAAATCTCTATCAGATTTTAACTTTTTCCACAATAAATTTAAAATATTAACTGTTAGATATAGTCTGATTAACACAAAAGATTGAGTTTGCTATACAGGAAACCAACGCCCCTAGTTTGCAAAATGATTTGTTTTATACTGCAAACTTTTGAGCCCATCTTTAGTTTCTTAAAGTGAAATGACTAAACTTTTCCATTCTTTCTTCAGAGGACTACTATTTTAGCTTCTAGATTAGTCAAAAAACGGAAGTATCTTAATGTGTTAGTATGTTTAGAGGTTGTTTAGTTTGTAAACTAGTTATGTAGGTATTATAATGCAAGAATTGCTTATACAGTGATATAATCATGTAGGAATTGTTACATGATGAAGAATAATGAAGGTGTTGTTATGTGGAGCAGTGCTTTGTTTATCTTTAGACTTTAGTTACTCTTTTGCATACATTTGCTAATACGTAAAATCCCCCATATGTTGTGTTGGTTTTGACGATAGCAGATTTAGTAAGTCCAGTGAATGTTGTATTACGTTATGTTTGTTAACGTGTATGGATTTTCTTTCGACAGGTGCTCGTAGAAAAAAGCCTATCGGTCACCACTAAAGAATTTTATTACTGAAGCATGATCACAAATTGGTAGCAGAAGCCTATTCTTCAACTTGCATCTACTGGAAAGGTTTATACTTGTTGTATGGGTTATTTACTTAGGGTCAAAAGTTAATGTGTAATGTTAAAGGTGATGTAGGAGCAAGCAATATATATGTAGGTCACATTCAGAGAATGAGATAAGGACCCACTTATGTAGTAAAGAAAGATTGATATA</genome_strand>
        <mrna_strand>CTTCAATAAATTCAGGTTTCTTCCCCCCTATGGTGGAAAGTGGTGATGTAAAGGCAGCATTTGCTGGCCATGATCACATAAATGATTTTTGTGGCAAGTTGATGGACATAAATTTTTGCTATGCTGGAGGATTTGGATATCACGCTTATGGGAAGGCTGGATGGTCAAGGAGGGCAAGGATGGTAGTAGCATCTTTGGAAAAAACAGGGAAAGGAGGGTGGGGAGATGTCAAATTTATTAAAACATGGAAGCGACTTGATGATGAACATCTTACAACCATCGATACTCAGGTTTTTTGGAGCAAAAGGTCTGCCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCGTAAAAAAAAGCCTATCGGTCCCCCCTAAAAAATTTTATTACTGAAGCATGATCCCAAATTGGTAGCAAAAGCCTATTTTTCAACTTGCATTTACTGGAAAGGTTTATACTTGTTGTATGGGTTATTTACTTAGGGTCAAAAGTTAATGTGTAATGTTAAAGGTGATGTAGGAGCAAGCAATATATATGTAGGTCCCATTCAAAGAATGAGATAAGGACCCCCTTATGTAGTTAAGAAAGATTGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422084" ref_strand="+" ref_description="SGN-E422084 [STM-34-G5]">
      <seq>gcagcattcgctggccatgatcacgtaaatgatttttgtggcaagttgatggacataaatctttgctatgctggaggatttggatatcacgcttatgggaaggctggatggtcaaggagggcaaggatggtagtagcatctttggagaaaacagggaaaggagggtggggagatgtcaaatctattaaaacatggaagcgacttgatgatgaacatcttacaaccatcgatactcaggtgctttggagcaagaggtctgccggtgctcgtagaaagaagcctatcggccaccattaaagaattttattactgaagcatgagcacaaattggtagcagaagcttattcttcaacttgcatctactggaaaggtcttaatacctgttgtatgggctatttacttagggtcaaaagttaatgtgtaatgttaaaggtgatataggagcatatatatgtaggtcacattcagagaatgaaatagggacccacttatgtagtgaagaaagattaatatagttcaaaaaccgactctctaccttctcaaggtanggtaaggtatgtgtacactctatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="563" stop="2910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="863" g_stop="1124" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1125" i_stop="2296" i_length="1172">
            <donor d_prob="0.697" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2297" g_stop="2585" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="549" r_length="287" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E422084" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="863" e_stop="1124"/>
          <exon e_start="2297" e_stop="2585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCATTTGCTGGCCATGATCACATAAATGATTTTTGTGGCAAGTTGATGGACATAAATCTTTGCTATGCTGGAGGATTTGGATATCACGCTTATGGGAAGGCTGGATGGTCAAGGAGGGCAAGGATGGTAGTAGCATCTTTGGAAAAAACAGGGAAAGGAGGGTGGGGAGATGTCAAATCTATTAAAACATGGAAGCGACTTGATGATGAACATCTTACAACCATCGATACTCAGGTTCTTTGGAGCAAGAGGTCTGCCGGTAAGGTTCTGAGAATGTAACTTCTCATCTCAGGCTTTGGGCTGTCCCAAGTAATATTATAATTCTAATGTTACTTTTCAGTTAATTTAGTTGGATCGATTCGTAAAACTGTTTGGTACTGGTGTTCAGTCAGTGTGTGCTGATATTCTCTATTGCTCTTTCATATGAGCTATGTTCTAAATGCAAACTGAGCATTAGATCTTTTAGTATGCTGCATGTGGTTTAGTGAAGAAATTGTGTTCAATAAACATTGTATATGCTCCTCAGCACCCTTACGTCACTTTAAGGACCGACTCTATGTATATAACTATGAAAGTAACTAAGTATCTGCATATGCTCTTGTCGACTATCTGTATTTTTCGTTTTCCAAACTGATACATAGAGGTATGTTACTCAGTAGCTATCAAAGGATTAAAGAGTAGAAATTCATTCAAGTACTTAGTTTAAATTAACCATGTGACCTTGTGGCATTCAAGCATGTTCTATTTGTTTTTTTAATGTGAGAGGAGGAGGCAGCATCTGCATGATTGGTGTATTTGGTTTTCCTTGGAAAAGCTTCTTGTTTTAGTAGGAGCTGCTATTATATATGTTGTCTATCATCTTCAGTACATAGAAATCTCTATCAGATTTTAACTTTTTCCACAATAAATTTAAAATATTAACTGTTAGATATAGTCTGATTAACACAAAAGATTGAGTTTGCTATACAGGAAACCAACGCCCCTAGTTTGCAAAATGATTTGTTTTATACTGCAAACTTTTGAGCCCATCTTTAGTTTCTTAAAGTGAAATGACTAAACTTTTCCATTCTTTCTTCAGAGGACTACTATTTTAGCTTCTAGATTAGTCAAAAAACGGAAGTATCTTAATGTGTTAGTATGTTTAGAGGTTGTTTAGTTTGTAAACTAGTTATGTAGGTATTATAATGCAAGAATTGCTTATACAGTGATATAATCATGTAGGAATTGTTACATGATGAAGAATAATGAAGGTGTTGTTATGTGGAGCAGTGCTTTGTTTATCTTTAGACTTTAGTTACTCTTTTGCATACATTTGCTAATACGTAAAATCCCCCATATGTTGTGTTGGTTTTGACGATAGCAGATTTAGTAAGTCCAGTGAATGTTGTATTACGTTATGTTTGTTAACGTGTATGGATTTTCTTTCGACAGGTGCTCGTAGAAAAAAGCCTATCGGTCACCACTAAAGAATTTTATTACTGAAGCATGATCACAAATTGGTAGCAGAAGCCTATTCTTCAACTTGCATCTACTGGAAAGGT-TT-ATACTTGTTGTATGGGTTATTTACTTAGGGTCAAAAGTTAATGTGTAATGTTAAAGGTGATGTAGGAGCAAGCAATATATATGTAGGTCACATTCAGAGAATGAGATAAGGACCCACTTATGTAGTAAAGAAAGATTGATATAGTTCGAAACTCGCCTCTCTACTTCCTCAA-GTAGG</genome_strand>
        <mrna_strand>GCAGCATTCGCTGGCCATGATCACGTAAATGATTTTTGTGGCAAGTTGATGGACATAAATCTTTGCTATGCTGGAGGATTTGGATATCACGCTTATGGGAAGGCTGGATGGTCAAGGAGGGCAAGGATGGTAGTAGCATCTTTGGAGAAAACAGGGAAAGGAGGGTGGGGAGATGTCAAATCTATTAAAACATGGAAGCGACTTGATGATGAACATCTTACAACCATCGATACTCAGGTGCTTTGGAGCAAGAGGTCTGCCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCGTAGAAAGAAGCCTATCGGCCACCATTAAAGAATTTTATTACTGAAGCATGAGCACAAATTGGTAGCAGAAGCTTATTCTTCAACTTGCATCTACTGGAAAGGTCTTAATACCTGTTGTATGGGCTATTTACTTAGGGTCAAAAGTTAATGTGTAATGTTAAAGGTGATATA-G-G--AGC-ATATATATGTAGGTCACATTCAGAGAATGAAATAGGGACCCACTTATGTAGTGAAGAAAGATTAATATAGTTCAAAAACCGACTCTCTACCTTCTCAAGGTANG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711591" ref_strand="+" ref_description="SGN-E711591 [FB02BF12]">
      <seq>ccgcttaattgatgatgaacatcttacaaccatcgatactcaccttctttggagcaagaggtctgccggtgctcgtagaaaaaagcctatcggtcaccactaaagaattttattactgaagcatgatcacaaattggtagcagaagcctattcttcaacttgcatctactggaaaggtttatacttgttgtatgggttatttacttagggtcaaaagttaatgtgtaatgttaaaggtgatgtaggagcaagcaatatatatgtaggtcacattcagagaatgagataaggacccacttatgtagtaaagaaagattgatatagttcgaaactcgcctctctacttcctcaagtagggcaaggtacgtgtacactttatcctcccgagatttattgttgttgtatgtttgctgttgtactagaaaaacgtgaactattctgttgtaccgatgttgtgcctttctcatattttttttccatatgattattctatttgagacnaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="763" stop="3031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1058" g_stop="1124" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.881"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1125" i_stop="2296" i_length="1172">
            <donor d_prob="0.697" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2297" g_stop="2728" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="500" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="502" polyA_stop="521"/>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E711591" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1058" e_stop="1124"/>
          <exon e_start="2297" e_stop="2728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGC-GACTTGATGATGAACATCTTACAACCATCGATACTCAGGTTCTTTGGAGCAAGAGGTCTGCCGGTAAGGTTCTGAGAATGTAACTTCTCATCTCAGGCTTTGGGCTGTCCCAAGTAATATTATAATTCTAATGTTACTTTTCAGTTAATTTAGTTGGATCGATTCGTAAAACTGTTTGGTACTGGTGTTCAGTCAGTGTGTGCTGATATTCTCTATTGCTCTTTCATATGAGCTATGTTCTAAATGCAAACTGAGCATTAGATCTTTTAGTATGCTGCATGTGGTTTAGTGAAGAAATTGTGTTCAATAAACATTGTATATGCTCCTCAGCACCCTTACGTCACTTTAAGGACCGACTCTATGTATATAACTATGAAAGTAACTAAGTATCTGCATATGCTCTTGTCGACTATCTGTATTTTTCGTTTTCCAAACTGATACATAGAGGTATGTTACTCAGTAGCTATCAAAGGATTAAAGAGTAGAAATTCATTCAAGTACTTAGTTTAAATTAACCATGTGACCTTGTGGCATTCAAGCATGTTCTATTTGTTTTTTTAATGTGAGAGGAGGAGGCAGCATCTGCATGATTGGTGTATTTGGTTTTCCTTGGAAAAGCTTCTTGTTTTAGTAGGAGCTGCTATTATATATGTTGTCTATCATCTTCAGTACATAGAAATCTCTATCAGATTTTAACTTTTTCCACAATAAATTTAAAATATTAACTGTTAGATATAGTCTGATTAACACAAAAGATTGAGTTTGCTATACAGGAAACCAACGCCCCTAGTTTGCAAAATGATTTGTTTTATACTGCAAACTTTTGAGCCCATCTTTAGTTTCTTAAAGTGAAATGACTAAACTTTTCCATTCTTTCTTCAGAGGACTACTATTTTAGCTTCTAGATTAGTCAAAAAACGGAAGTATCTTAATGTGTTAGTATGTTTAGAGGTTGTTTAGTTTGTAAACTAGTTATGTAGGTATTATAATGCAAGAATTGCTTATACAGTGATATAATCATGTAGGAATTGTTACATGATGAAGAATAATGAAGGTGTTGTTATGTGGAGCAGTGCTTTGTTTATCTTTAGACTTTAGTTACTCTTTTGCATACATTTGCTAATACGTAAAATCCCCCATATGTTGTGTTGGTTTTGACGATAGCAGATTTAGTAAGTCCAGTGAATGTTGTATTACGTTATGTTTGTTAACGTGTATGGATTTTCTTTCGACAGGTGCTCGTAGAAAAAAGCCTATCGGTCACCACTAAAGAATTTTATTACTGAAGCATGATCACAAATTGGTAGCAGAAGCCTATTCTTCAACTTGCATCTACTGGAAAGGTTTATACTTGTTGTATGGGTTATTTACTTAGGGTCAAAAGTTAATGTGTAATGTTAAAGGTGATGTAGGAGCAAGCAATATATATGTAGGTCACATTCAGAGAATGAGATAAGGACCCACTTATGTAGTAAAGAAAGATTGATATAGTTCGAAACTCGCCTCTCTACTTCCTCAAGTAGGGCAAGGTACGTGTACACTTTATCCTCCCGAGATTTATTGTTGTTGTATGTTTGCTGTTGTACTAGAAAAACGTGAACTATTCTGTTGTACCGATGTTGTGCCTTTCTCATATTTTTTTTCCATATGATTATTCTATTTGAGAC</genome_strand>
        <mrna_strand>CCGCTTAATTGATGATGAACATCTTACAACCATCGATACTCACCTTCTTTGGAGCAAGAGGTCTGCCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCGTAGAAAAAAGCCTATCGGTCACCACTAAAGAATTTTATTACTGAAGCATGATCACAAATTGGTAGCAGAAGCCTATTCTTCAACTTGCATCTACTGGAAAGGTTTATACTTGTTGTATGGGTTATTTACTTAGGGTCAAAAGTTAATGTGTAATGTTAAAGGTGATGTAGGAGCAAGCAATATATATGTAGGTCACATTCAGAGAATGAGATAAGGACCCACTTATGTAGTAAAGAAAGATTGATATAGTTCGAAACTCGCCTCTCTACTTCCTCAAGTAGGGCAAGGTACGTGTACACTTTATCCTCCCGAGATTTATTGTTGTTGTATGTTTGCTGTTGTACTAGAAAAACGTGAACTATTCTGTTGTACCGATGTTGTGCCTTTCTCATATTTTTTTTCCATATGATTATTCTATTTGAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351006" ref_strand="+" ref_description="SGN-E351006 [cTOS-6-I7]">
      <seq>tctgccggtgctcgtagaaaaaagcctatcggtcaccactaaagaattttattactgaagcatgatcacaaattggtagcagaagcctattcttcaacttgcatctactggaaaggtttatacttgttgtatgggttatttacttagggtcaaaagttaatgtgtaatgttaaaggtgatgtaggagcaagcaatatatatgtaggtcacattcagagaatgagataaggacccacttatgtagtaaagaaagattgatatagttcgaaactcgcctctctacttcctcaagtagggcaaggtacgtgtacactttatcctcccgagatttattgttgttgtatgtttgctgttgtactagaaaaacgtgaactattctgttgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="1990" stop="2974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2297" g_stop="2671" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="382" r_length="375" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="385" polyA_stop="394"/>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E351006" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2297" e_stop="2671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTCGTAGAAAAAAGCCTATCGGTCACCACTAAAGAATTTTATTACTGAAGCATGATCACAAATTGGTAGCAGAAGCCTATTCTTCAACTTGCATCTACTGGAAAGGTTTATACTTGTTGTATGGGTTATTTACTTAGGGTCAAAAGTTAATGTGTAATGTTAAAGGTGATGTAGGAGCAAGCAATATATATGTAGGTCACATTCAGAGAATGAGATAAGGACCCACTTATGTAGTAAAGAAAGATTGATATAGTTCGAAACTCGCCTCTCTACTTCCTCAAGTAGGGCAAGGTACGTGTACACTTTATCCTCCCGAGATTTATTGTTGTTGTATGTTTGCTGTTGTACTAGAAAAACGTGAACTATTCTGTT</genome_strand>
        <mrna_strand>GTGCTCGTAGAAAAAAGCCTATCGGTCACCACTAAAGAATTTTATTACTGAAGCATGATCACAAATTGGTAGCAGAAGCCTATTCTTCAACTTGCATCTACTGGAAAGGTTTATACTTGTTGTATGGGTTATTTACTTAGGGTCAAAAGTTAATGTGTAATGTTAAAGGTGATGTAGGAGCAAGCAATATATATGTAGGTCACATTCAGAGAATGAGATAAGGACCCACTTATGTAGTAAAGAAAGATTGATATAGTTCGAAACTCGCCTCTCTACTTCCTCAAGTAGGGCAAGGTACGTGTACACTTTATCCTCCCGAGATTTATTGTTGTTGTATGTTTGCTGTTGTACTAGAAAAACGTGAACTATTCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551695" ref_strand="+" ref_description="SGN-E551695 [cTSB-1-I4]">
      <seq>agttgtgaccttccacaaccagcgtgatttcatattttttcgccatcatcgctacatttttgaaaccaaagagagcaaacagaaagaatcaaaaggtaaaaaaagcaaggatgagaagaacccacaagaaaggacaattgcccgtctgcaggagtgtgggcctcgatttactctcaaattaatcagtctccagcatggtacttttgatactaagggtggggaatatgaatgggttcacaagccggagatggatacaagtcgacggagatttttcctgtgataatgttggatgtttctgctgctgggatttcaaggtctttgtacccaaaccatgttaaagaagaataccaactatctgaggctgaagttcactataaaagttttgatcttttctaattaactgctttttttgtaatggactatctcttatagtaatctattaaagtagaaagatgggttttaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="4741" stop="2709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4441" g_stop="4391" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4390" i_stop="4287" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4286" g_stop="4187" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="151" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4186" i_stop="3453" i_length="734">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3452" g_stop="3363" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="241" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3362" i_stop="3230" i_length="133">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3229" g_stop="3009" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="462" r_length="221" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="463" polyA_stop="487"/>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E551695" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4441" e_stop="4391"/>
          <exon e_start="4286" e_stop="4187"/>
          <exon e_start="3452" e_stop="3363"/>
          <exon e_start="3229" e_stop="3009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGTGACCTTCCACAACCAGCGTGATTTCATATTTTTTCGCCATCATCGGTATGCCCTCATTAAACCTTGTGTTTTCCGCTTCTGTTTCTAAATTTGAATAGTAGGACTCTTACTAACATGTTCTGCTGATGTACTTGTTCGCTTTTGTGAAGCTACATTTTTGAAACCAAAGAGAGCAAACAGAAAGAATCAAAAGGTAAAAAAAGCAAGGATGAGAAGAACCCACAAGAAAGGACAATTGCCCGTCTGCAGGTTTGTGGTTCTGATTCTACTGCATTGATTTTAGGAATACAGGGTTATTTTCAAGATATTTAAGAGTCTTTTCAAACCCTTGAATGAAGCGGGTTGCGTCTTATGGGGTTGTTGCTAGTTAAGGGAGGATAACTCTTTGATGTTGGATTGGAAAGGAAGGAACAAAACTATTTTCATGTAATACTGAATTTCTGCTGTTGTTAGACAAGCCTAGTTGTCTATCTGGAACCTCTGAGAAAAATTCAGCTCTAAATGAAAAAACTTAATGGGAGTGGAAAACAACACAGCTCAAAGAAATTTGCATGGGCACAAAATTGTTCACCTTTTGCATTAGTATGTCTACTCATAGCTTGTGCAGCTAAAGACCTATACACAGCCTATTAAAGCTTTGATCCAACAAGAAGGATTTCTAGTTGCTGAATCGAAGTGAAACAGATACAATTAACTTGGAACCACAATTGAATATCCGTGAAACAGCTTTGCAATTAGCTACCAGTAGAATCCCAAGACAAAATCTCATGTTTTTTCTTTCCATTTGGGGTGAGGGTGTGAACTAATTTCATCTCTTATTTTGTCTTCGTTTTGTCCTTCCTATCTACGAGAGCTGTCATTATATTTGTCCCTAGTAATCAATCAGTTACATTTTGGATGAATGAAAATAGTTTCGATGGTGCCCATAGCTGTTGTTTTTTTGTGCATGCCAGCTTGACTTTTTGGTGTTTTCCGACTTACAGGAGTGTGGGCCTCGATTTACTCTCAAATTAATCAGTCTCCAGCATGGTACTTTTGATACTAAGGGTGGGGAATATGAATGGGTTCACAAGGTAATTCATGTGAAAAAAAGATGTCGTTTGTATATACTTTTCAACTGAGCTTATGCTTTTCCATACTTTAAATGGATTCTGAACTTGTTTGTCATTGGTGATAAATTCTCTGATCCATCCTGTTTTGTTTCAGCCGGAGATGGATACAAGTCGACGGAGATTTTTCCTGTGATAATGTTGGATGTTTCTGCTGCTGGGATTTCAAGGTCTTTGTACCCAAACCATGTTAAAGAAGAATACCAACTATCTGAGGCTGAAGTTCACTATAAAAGTTTTGATCTTTTCTAATTAACTGCTTTTTTTGTAATGGACTATCTCTTATAGTAATCTATTAAAGTAGAAAGATGGGTTTTA</genome_strand>
        <mrna_strand>AGTTGTGACCTTCCACAACCAGCGTGATTTCATATTTTTTCGCCATCATCG........................................................................................................CTACATTTTTGAAACCAAAGAGAGCAAACAGAAAGAATCAAAAGGTAAAAAAAGCAAGGATGAGAAGAACCCACAAGAAAGGACAATTGCCCGTCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTGGGCCTCGATTTACTCTCAAATTAATCAGTCTCCAGCATGGTACTTTTGATACTAAGGGTGGGGAATATGAATGGGTTCACAAG.....................................................................................................................................CCGGAGATGGATACAAGTCGACGGAGATTTTTCCTGTGATAATGTTGGATGTTTCTGCTGCTGGGATTTCAAGGTCTTTGTACCCAAACCATGTTAAAGAAGAATACCAACTATCTGAGGCTGAAGTTCACTATAAAAGTTTTGATCTTTTCTAATTAACTGCTTTTTTTGTAATGGACTATCTCTTATAGTAATCTATTAAAGTAGAAAGATGGGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600135" ref_strand="+" ref_description="SGN-E600135 [53139]">
      <seq>ggaaagccaaccagtcacaagcctgagctgtgttttgaccaacttcacaacacgtttggggcatcgagttgggaggatgatacagtcacttttcccacaagatcccgaatttcgtggacgtcgagttgtgaccttccacaaccagcgtgatttcatattttttcgccatcatcgctacatttttgaaaccaaagagagcaaacagaaagaatcagaaggtaaaaaaagcaaggatgagaagaacccacaagaaaggacaattgcccgtctgcaggaatgtgggcctcgatttactctcaaattaatcagtctccagcatggcacttttgataccaagggtggggaatatgaatgggttcacaagccggagatggatacaagtcgacggagatttttcttgtgataatgtgggatgtttctgctgctgggattcaaggtctttgtacccaaaccatgtaacagaagaataccaactatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="5086" stop="2812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4786" g_stop="4713" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4712" i_stop="4490" i_length="223">
            <donor d_prob="0.975" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4489" g_stop="4391" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="174" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4390" i_stop="4287" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4286" g_stop="4187" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="274" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4186" i_stop="3453" i_length="734">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3452" g_stop="3363" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="364" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3362" i_stop="3230" i_length="133">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3229" g_stop="3112" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="481" r_length="117" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E600135" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E600135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4786" e_stop="4713"/>
          <exon e_start="4489" e_stop="4391"/>
          <exon e_start="4286" e_stop="4187"/>
          <exon e_start="3452" e_stop="3363"/>
          <exon e_start="3229" e_stop="3112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGCCAACTAGTCACAAGCCTGAGCTG-GTTTTGACCAACTTCACAACACGTTTGGGTCATCGAGTTGGGAGGTAGAGCCACTATGATTTTGCTGGATTACTGTAATTCTTGTAATTATTTCCAGCGACCAAGTATCTGAGACATTTTATACATTAATAAAAGTTGACACCATTTACTGATGGAGAGATAGAAATAAGATGAAAATCTATCTTTAACTTATAGCTCCTCTTTGAGAAACTTATGTTACAAGTGATTATCTAAGATAATAAATGTCTGCTGATTTTGTTCATGCAGGATGATACAGTCACTTTTTCCACAAGATCCCGAATTTCGTGGACGTCGAGTTGTGACCTTCCACAACCAGCGTGATTTCATATTTTTTCGCCATCATCGGTATGCCCTCATTAAACCTTGTGTTTTCCGCTTCTGTTTCTAAATTTGAATAGTAGGACTCTTACTAACATGTTCTGCTGATGTACTTGTTCGCTTTTGTGAAGCTACATTTTTGAAACCAAAGAGAGCAAACAGAAAGAATCAAAAGGTAAAAAAAGCAAGGATGAGAAGAACCCACAAGAAAGGACAATTGCCCGTCTGCAGGTTTGTGGTTCTGATTCTACTGCATTGATTTTAGGAATACAGGGTTATTTTCAAGATATTTAAGAGTCTTTTCAAACCCTTGAATGAAGCGGGTTGCGTCTTATGGGGTTGTTGCTAGTTAAGGGAGGATAACTCTTTGATGTTGGATTGGAAAGGAAGGAACAAAACTATTTTCATGTAATACTGAATTTCTGCTGTTGTTAGACAAGCCTAGTTGTCTATCTGGAACCTCTGAGAAAAATTCAGCTCTAAATGAAAAAACTTAATGGGAGTGGAAAACAACACAGCTCAAAGAAATTTGCATGGGCACAAAATTGTTCACCTTTTGCATTAGTATGTCTACTCATAGCTTGTGCAGCTAAAGACCTATACACAGCCTATTAAAGCTTTGATCCAACAAGAAGGATTTCTAGTTGCTGAATCGAAGTGAAACAGATACAATTAACTTGGAACCACAATTGAATATCCGTGAAACAGCTTTGCAATTAGCTACCAGTAGAATCCCAAGACAAAATCTCATGTTTTTTCTTTCCATTTGGGGTGAGGGTGTGAACTAATTTCATCTCTTATTTTGTCTTCGTTTTGTCCTTCCTATCTACGAGAGCTGTCATTATATTTGTCCCTAGTAATCAATCAGTTACATTTTGGATGAATGAAAATAGTTTCGATGGTGCCCATAGCTGTTGTTTTTTTGTGCATGCCAGCTTGACTTTTTGGTGTTTTCCGACTTACAGGAGTGTGGGCCTCGATTTACTCTCAAATTAATCAGTCTCCAGCATGGTACTTTTGATACTAAGGGTGGGGAATATGAATGGGTTCACAAGGTAATTCATGTGAAAAAAAGATGTCGTTTGTATATACTTTTCAACTGAGCTTATGCTTTTCCATACTTTAAATGGATTCTGAACTTGTTTGTCATTGGTGATAAATTCTCTGATCCATCCTGTTTTGTTTCAGCCGGAGATGGATACAAGTCGACGGAGATTTTTCCTGTGATAATGTTGGATGTTTCTGCTGCTGGGATTTCAAGGTCTTTGTACCCAAACCATGTTAAAGAAGAATACCAACTATCTGA</genome_strand>
        <mrna_strand>GGAAAGCCAACCAGTCACAAGCCTGAGCTGTGTTTTGACCAACTTCACAACACGTTTGGGGCATCGAGTTGGGAG...............................................................................................................................................................................................................................GATGATACAGTCACTTTTCCCACAAGATCCCGAATTTCGTGGACGTCGAGTTGTGACCTTCCACAACCAGCGTGATTTCATATTTTTTCGCCATCATCG........................................................................................................CTACATTTTTGAAACCAAAGAGAGCAAACAGAAAGAATCAGAAGGTAAAAAAAGCAAGGATGAGAAGAACCCACAAGAAAGGACAATTGCCCGTCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGGCCTCGATTTACTCTCAAATTAATCAGTCTCCAGCATGGCACTTTTGATACCAAGGGTGGGGAATATGAATGGGTTCACAAG.....................................................................................................................................CCGGAGATGGATACAAGTCGACGGAGATTTTTCTTGTGATAATGTGGGATGTTTCTGCTGCTGGGA-TTCAAGGTCTTTGTACCCAAACCATGTAACAGAAGAATACCAACTATCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580868" ref_strand="+" ref_description="SGN-E580868 [6111]">
      <seq>catatgacctgaaaaagatcgtccaatatgcaaatgagaaaggaatttacttctgttattgtagtccacgagccaatcggccgtgaaaccagatgctctttcttgtcattgggttttacctgatgggacctactgctcattttcaaagctcttcaaagctcatgctacggaaaggatatcaaagaatcattggaaagccaaccagtcacaagcctgagctggttttgaccaacttcacaacacgtttggggcatcgagttgggaggatgatacagtcacttttcccacaagatcccgaatttcgtggacgtcgagttgtgaccttccacaaccagcgtgatttcatattttttcgccatcatcgctacatttttgaaaccaaagagagcaaacagaaagaatcaaaaggtaaaaaaagcaaggatgagaagaacccacaagaaaggacaattgcccgtctgcaggaatgtgggcctcgatttactctcaaattaatcagtctccagcatggcacttttgataccaagggtggggaatatgaatgggttcacaagccgggagatggatacaagtcgacggagcatttttcttgtgatactgttggatgttcctgctgctggggatttcaaggtctttgtacccaaaacatgttaaagaagaataccaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="6964" stop="2818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6664" g_stop="6648" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6647" i_stop="6511" i_length="137">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6510" g_stop="6441" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="92" r_length="75" r_score="0.843"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6440" i_stop="6302" i_length="139">
            <donor d_prob="0.848" d_score="0.80"/>
            <acceptor a_prob="0.985" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6301" g_stop="6219" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="184" r_length="92" r_score="0.783"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6218" i_stop="4793" i_length="1426">
            <donor d_prob="0.973" d_score="0.78"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4792" g_stop="4713" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="265" r_length="81" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4712" i_stop="4490" i_length="223">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4489" g_stop="4391" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="364" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4390" i_stop="4287" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4286" g_stop="4187" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="464" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4186" i_stop="3453" i_length="734">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3452" g_stop="3363" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="554" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="3362" i_stop="3230" i_length="133">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3229" g_stop="3117" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="670" r_length="116" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E580868" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E580868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6664" e_stop="6648"/>
          <exon e_start="6510" e_stop="6441"/>
          <exon e_start="6301" e_stop="6219"/>
          <exon e_start="4792" e_stop="4713"/>
          <exon e_start="4489" e_stop="4391"/>
          <exon e_start="4286" e_stop="4187"/>
          <exon e_start="3452" e_stop="3363"/>
          <exon e_start="3229" e_stop="3117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATGACCTGAAAAAGGTTCTTTCTTGCCTTCTCTTTTCTCATTCCTTTTATGTTTCTTGGTGATATGAATGAATGCCCTCATATTATTCAAATTCAAGGAGTTTTTCCATTGTACTAGTTCGAAATGTTCATTGCTTTTCTAACTTTTGCAGATCGTCCAATATGCAAATGAG-AAGGAATTTACTTCTGTTATTGTAGTCCAC-A-CCAATC-GCCGTG-AGCCAGGTCATATTCTTGAACACATAGCTTTTTTTGATTCCTCTAAAAATAGCTATGGATTGTGTTCTTGCATTCATTCACCTTTCCAGTTTCTTTGTTGGTCTGAATTGCCAGCTTGATCATTTTTTTCATTTTCTTTCTTTAGATGCTCTT-CTTGTCATT-GG-TTTACCTGAT-GGACCTACTGCTCA-TTTC-AAGCTC-TCAAAGCTCATGCTACGG-AAGGATATC-AAGGTTCGATAGTTCTCCTTCTAAATAGATCTTTCTCCCCCACCTTCACTGAAAAAATGCAGGGAAAGAAAAGGAACGTAGTAAGGGAACTTACAACTTATGCTGTTGTCTAATTGCTTCTGGTTGATGCATTTTACACTAAACATTACAGTTTTATTAATTCCTGCAAAAAGAATCAAATGAGAATGAGCTTGTCTTGAAGTCAGCTGAGTTGTATGAATTAAATCAACAGTCGAAGTTATTTGGTTCTCTTAGAAATTACTAATGTTTTCAAATAGATGATGTTGTGTCTGACTTTTTTGTGGAAATTTCATCCTATTGCATTGCCTCGTGCCATATTAACAATTAGTTTGGTTTTCCTCTACATTTTTTGTGAGTGATTTGCACGTATGTCATGCTGTCTTTGTACTATGATAATCAATCAGGTATCAAGAAGTTGTATTATGCAGGACAAGATTAAGTGCTACTCCCTACATTTCAAATTAATTGAAAATCAGTGAAATGTTGATGTGTTCCAACAAGGGAGTGAAGGTTAGGCTGCTAAAATTGAGATGTGAATGCTAAGATGGATGTACCGACATACGAGATTATATAAGATAAAAAATGATCACATTCGCCACAAAGTGCAAACAGCACACATTGAGGATACGATGAAAGAAAATCGTTTTGAGATGATTTGGTCATGTGCTGCGTTGACACCAGATACACCACAGTAAGTGAAGGTGATAAAATAGAAGAGATGGACCTAAACTTAAACGGAAGAAAGTTGTCTACAAAGACCTATGGTATCTTGAAATGAATGCTGAATTTGTGAAAGATATAACACAACAGTAGAGAAATATTTATATAGGTGAATATAAATTAATTGAGAATATATATTCTTTCCTTGGGGCCAACGCTTAGGACCATCTGCAGCCTTTGAACCTCGAGGATAATGGACTAAAATATGACCTCAACTAATAGCTTTCATGACTTGGTTCAAGTGACGAAGGTTGAGTGACTTGTGAGTTGTGACTTAGGTCAGAAGTTCAAGTCGCACGCCAATTCTAACCAAGCCTGGTACTTAAGTGGAGAAGGATGGAAAAACATACTTTAGTGTCAGCGGAATCACTAGGACATGCTCATTTTATTTTTTTGATACTAGACATGCTCATTTTAGCAAAAGTGAAAAAGTCTGTCTGGGATTATTTTTAAAAGGAGTCCACTTGAGAAGGTGAAAGCTGTGCGTTCTCTTCTTGGAGAGAGAAGCCTAATTTATTGCAAGTTAACCACCATTCAGAAAATTCCTTTTTCATAATGGTTCTAATGCTAATGCTGCTGTGTGTATCTATGTATAACTCAGCATAAGATGTTGTAAGTTAAAGCAATCAATCAATGAGGTTAATATGAATAGTAGATATTCAAGTAACGACTCCTTTTTTGCTTGCAGAATCA-TGGAAAGCCAACTAGTCACAAGCCTGAGCTGGTTTTGACCAACTTCACAACACGTTTGGGTCATCGAGTTGGGAGGTAGAGCCACTATGATTTTGCTGGATTACTGTAATTCTTGTAATTATTTCCAGCGACCAAGTATCTGAGACATTTTATACATTAATAAAAGTTGACACCATTTACTGATGGAGAGATAGAAATAAGATGAAAATCTATCTTTAACTTATAGCTCCTCTTTGAGAAACTTATGTTACAAGTGATTATCTAAGATAATAAATGTCTGCTGATTTTGTTCATGCAGGATGATACAGTCACTTTTTCCACAAGATCCCGAATTTCGTGGACGTCGAGTTGTGACCTTCCACAACCAGCGTGATTTCATATTTTTTCGCCATCATCGGTATGCCCTCATTAAACCTTGTGTTTTCCGCTTCTGTTTCTAAATTTGAATAGTAGGACTCTTACTAACATGTTCTGCTGATGTACTTGTTCGCTTTTGTGAAGCTACATTTTTGAAACCAAAGAGAGCAAACAGAAAGAATCAAAAGGTAAAAAAAGCAAGGATGAGAAGAACCCACAAGAAAGGACAATTGCCCGTCTGCAGGTTTGTGGTTCTGATTCTACTGCATTGATTTTAGGAATACAGGGTTATTTTCAAGATATTTAAGAGTCTTTTCAAACCCTTGAATGAAGCGGGTTGCGTCTTATGGGGTTGTTGCTAGTTAAGGGAGGATAACTCTTTGATGTTGGATTGGAAAGGAAGGAACAAAACTATTTTCATGTAATACTGAATTTCTGCTGTTGTTAGACAAGCCTAGTTGTCTATCTGGAACCTCTGAGAAAAATTCAGCTCTAAATGAAAAAACTTAATGGGAGTGGAAAACAACACAGCTCAAAGAAATTTGCATGGGCACAAAATTGTTCACCTTTTGCATTAGTATGTCTACTCATAGCTTGTGCAGCTAAAGACCTATACACAGCCTATTAAAGCTTTGATCCAACAAGAAGGATTTCTAGTTGCTGAATCGAAGTGAAACAGATACAATTAACTTGGAACCACAATTGAATATCCGTGAAACAGCTTTGCAATTAGCTACCAGTAGAATCCCAAGACAAAATCTCATGTTTTTTCTTTCCATTTGGGGTGAGGGTGTGAACTAATTTCATCTCTTATTTTGTCTTCGTTTTGTCCTTCCTATCTACGAGAGCTGTCATTATATTTGTCCCTAGTAATCAATCAGTTACATTTTGGATGAATGAAAATAGTTTCGATGGTGCCCATAGCTGTTGTTTTTTTGTGCATGCCAGCTTGACTTTTTGGTGTTTTCCGACTTACAGGAGTGTGGGCCTCGATTTACTCTCAAATTAATCAGTCTCCAGCATGGTACTTTTGATACTAAGGGTGGGGAATATGAATGGGTTCACAAGGTAATTCATGTGAAAAAAAGATGTCGTTTGTATATACTTTTCAACTGAGCTTATGCTTTTCCATACTTTAAATGGATTCTGAACTTGTTTGTCATTGGTGATAAATTCTCTGATCCATCCTGTTTTGTTTCAGCC-GGAGATGGATACAAGTCGACGGAG-ATTTTTCCTGTGATAATGTTGGATGTTTCTGCTGCT-GGGATTTCAAGGTCTTTGTACCCAAACCATGTTAAAGAAGAATACCAACTA</genome_strand>
        <mrna_strand>CATATGACCTGAAAAAG.........................................................................................................................................ATCGTCCAATATGCAAATGAGAAAGGAATTTACTTCTGTTATTGTAGTCCACGAGCCAATCGGCCGTGAAACCAG...........................................................................................................................................ATGCTCTTTCTTGTCATTGGGTTTTACCTGATGGGACCTACTGCTCATTTTCAAAGCTCTTCAAAGCTCATGCTACGGAAAGGATATCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCATTGGAAAGCCAACCAGTCACAAGCCTGAGCTGGTTTTGACCAACTTCACAACACGTTTGGGGCATCGAGTTGGGAG...............................................................................................................................................................................................................................GATGATACAGTCACTTTTCCCACAAGATCCCGAATTTCGTGGACGTCGAGTTGTGACCTTCCACAACCAGCGTGATTTCATATTTTTTCGCCATCATCG........................................................................................................CTACATTTTTGAAACCAAAGAGAGCAAACAGAAAGAATCAAAAGGTAAAAAAAGCAAGGATGAGAAGAACCCACAAGAAAGGACAATTGCCCGTCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGGCCTCGATTTACTCTCAAATTAATCAGTCTCCAGCATGGCACTTTTGATACCAAGGGTGGGGAATATGAATGGGTTCACAAG.....................................................................................................................................CCGGGAGATGGATACAAGTCGACGGAGCATTTTTCTTGTGATACTGTTGGATGTTCCTGCTGCTGGGGATTTCAAGGTCTTTGTACCCAAAACATGTTAAAGAAGAATACCAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474451" ref_strand="+" ref_description="SGN-E474451 [cSTB-36-H9]">
      <seq>acgatgttgatgaatttagtgcagttctgaagaatgagcgtagtccgaaaatattgattacaacatcccgttataactctacaagaggaccagcatttatttccgatcttatttctgtgattcctaatgctcattactataaacgaggaacatatgacctgaaaaagatcgtccaatatgcaaatgagaaggaatttacttctgttattgtagtccacaccaatcgccgtgaaccagatgcccttcttgtcattggtttacctgatggacctactgctcatttcaagctctcaaagctcatgctacggaaggatatcaagaatcatggaaagccaaccagtcacaagcctgagctggttttgaccaacttcacaacacgtttggggcatcgagttgggaggatgatacagtcacttttcccacaagatcccgaatttcgtggacgtcgagttgtgaccttccacaaccagcgtgatttcatattttttcgccatcatcgctacatttttgaaaccaaagagagcaaacagaaagaatcaaaaggtaataaaagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="7206" stop="3930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6906" g_stop="6824" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6823" i_stop="6732" i_length="92">
            <donor d_prob="0.697" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6731" g_stop="6648" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="167" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6647" i_stop="6511" i_length="137">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6510" g_stop="6441" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="237" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6440" i_stop="6302" i_length="139">
            <donor d_prob="0.848" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6301" g_stop="6219" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="320" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6218" i_stop="4793" i_length="1426">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4792" g_stop="4713" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="400" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4712" i_stop="4490" i_length="223">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4489" g_stop="4391" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="499" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4390" i_stop="4287" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4286" g_stop="4230" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="556" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E474451" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6906" e_stop="6824"/>
          <exon e_start="6731" e_stop="6648"/>
          <exon e_start="6510" e_stop="6441"/>
          <exon e_start="6301" e_stop="6219"/>
          <exon e_start="4792" e_stop="4713"/>
          <exon e_start="4489" e_stop="4391"/>
          <exon e_start="4286" e_stop="4230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACAGTAAGCTTGTATAATTTGTGCTTCCCTATTGCTTTGATTATTGTTGACTTTGAATTTAATTCCACAAATAATTTCGTTATTCCATTCTTCAGAGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAGGTTCTTTCTTGCCTTCTCTTTTCTCATTCCTTTTATGTTTCTTGGTGATATGAATGAATGCCCTCATATTATTCAAATTCAAGGAGTTTTTCCATTGTACTAGTTCGAAATGTTCATTGCTTTTCTAACTTTTGCAGATCGTCCAATATGCAAATGAGAAGGAATTTACTTCTGTTATTGTAGTCCACACCAATCGCCGTGAGCCAGGTCATATTCTTGAACACATAGCTTTTTTTGATTCCTCTAAAAATAGCTATGGATTGTGTTCTTGCATTCATTCACCTTTCCAGTTTCTTTGTTGGTCTGAATTGCCAGCTTGATCATTTTTTTCATTTTCTTTCTTTAGATGCTCTTCTTGTCATTGGTTTACCTGATGGACCTACTGCTCATTTCAAGCTCTCAAAGCTCATGCTACGGAAGGATATCAAGGTTCGATAGTTCTCCTTCTAAATAGATCTTTCTCCCCCACCTTCACTGAAAAAATGCAGGGAAAGAAAAGGAACGTAGTAAGGGAACTTACAACTTATGCTGTTGTCTAATTGCTTCTGGTTGATGCATTTTACACTAAACATTACAGTTTTATTAATTCCTGCAAAAAGAATCAAATGAGAATGAGCTTGTCTTGAAGTCAGCTGAGTTGTATGAATTAAATCAACAGTCGAAGTTATTTGGTTCTCTTAGAAATTACTAATGTTTTCAAATAGATGATGTTGTGTCTGACTTTTTTGTGGAAATTTCATCCTATTGCATTGCCTCGTGCCATATTAACAATTAGTTTGGTTTTCCTCTACATTTTTTGTGAGTGATTTGCACGTATGTCATGCTGTCTTTGTACTATGATAATCAATCAGGTATCAAGAAGTTGTATTATGCAGGACAAGATTAAGTGCTACTCCCTACATTTCAAATTAATTGAAAATCAGTGAAATGTTGATGTGTTCCAACAAGGGAGTGAAGGTTAGGCTGCTAAAATTGAGATGTGAATGCTAAGATGGATGTACCGACATACGAGATTATATAAGATAAAAAATGATCACATTCGCCACAAAGTGCAAACAGCACACATTGAGGATACGATGAAAGAAAATCGTTTTGAGATGATTTGGTCATGTGCTGCGTTGACACCAGATACACCACAGTAAGTGAAGGTGATAAAATAGAAGAGATGGACCTAAACTTAAACGGAAGAAAGTTGTCTACAAAGACCTATGGTATCTTGAAATGAATGCTGAATTTGTGAAAGATATAACACAACAGTAGAGAAATATTTATATAGGTGAATATAAATTAATTGAGAATATATATTCTTTCCTTGGGGCCAACGCTTAGGACCATCTGCAGCCTTTGAACCTCGAGGATAATGGACTAAAATATGACCTCAACTAATAGCTTTCATGACTTGGTTCAAGTGACGAAGGTTGAGTGACTTGTGAGTTGTGACTTAGGTCAGAAGTTCAAGTCGCACGCCAATTCTAACCAAGCCTGGTACTTAAGTGGAGAAGGATGGAAAAACATACTTTAGTGTCAGCGGAATCACTAGGACATGCTCATTTTATTTTTTTGATACTAGACATGCTCATTTTAGCAAAAGTGAAAAAGTCTGTCTGGGATTATTTTTAAAAGGAGTCCACTTGAGAAGGTGAAAGCTGTGCGTTCTCTTCTTGGAGAGAGAAGCCTAATTTATTGCAAGTTAACCACCATTCAGAAAATTCCTTTTTCATAATGGTTCTAATGCTAATGCTGCTGTGTGTATCTATGTATAACTCAGCATAAGATGTTGTAAGTTAAAGCAATCAATCAATGAGGTTAATATGAATAGTAGATATTCAAGTAACGACTCCTTTTTTGCTTGCAGAATCATGGAAAGCCAACTAGTCACAAGCCTGAGCTGGTTTTGACCAACTTCACAACACGTTTGGGTCATCGAGTTGGGAGGTAGAGCCACTATGATTTTGCTGGATTACTGTAATTCTTGTAATTATTTCCAGCGACCAAGTATCTGAGACATTTTATACATTAATAAAAGTTGACACCATTTACTGATGGAGAGATAGAAATAAGATGAAAATCTATCTTTAACTTATAGCTCCTCTTTGAGAAACTTATGTTACAAGTGATTATCTAAGATAATAAATGTCTGCTGATTTTGTTCATGCAGGATGATACAGTCACTTTTTCCACAAGATCCCGAATTTCGTGGACGTCGAGTTGTGACCTTCCACAACCAGCGTGATTTCATATTTTTTCGCCATCATCGGTATGCCCTCATTAAACCTTGTGTTTTCCGCTTCTGTTTCTAAATTTGAATAGTAGGACTCTTACTAACATGTTCTGCTGATGTACTTGTTCGCTTTTGTGAAGCTACATTTTTGAAACCAAAGAGAGCAAACAGAAAGAATCAAAAGGTAAAAAAAGCAA</genome_strand>
        <mrna_strand>ACGATGTTGATGAATTTAGTGCAGTTCTGAAGAATGAGCGTAGTCCGAAAATATTGATTACAACATCCCGTTATAACTCTACA............................................................................................AGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAG.........................................................................................................................................ATCGTCCAATATGCAAATGAGAAGGAATTTACTTCTGTTATTGTAGTCCACACCAATCGCCGTGAACCAG...........................................................................................................................................ATGCCCTTCTTGTCATTGGTTTACCTGATGGACCTACTGCTCATTTCAAGCTCTCAAAGCTCATGCTACGGAAGGATATCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCATGGAAAGCCAACCAGTCACAAGCCTGAGCTGGTTTTGACCAACTTCACAACACGTTTGGGGCATCGAGTTGGGAG...............................................................................................................................................................................................................................GATGATACAGTCACTTTTCCCACAAGATCCCGAATTTCGTGGACGTCGAGTTGTGACCTTCCACAACCAGCGTGATTTCATATTTTTTCGCCATCATCG........................................................................................................CTACATTTTTGAAACCAAAGAGAGCAAACAGAAAGAATCAAAAGGTAATAAAAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358898" ref_strand="+" ref_description="SGN-E358898 [cLHT-24-C20]">
      <seq>gtgtttgaagctatttgctggcaacgatgttgatgagtttagtgcagttctgaagaacgagcgtagtccaaaaatattgattacaacatcacgttataactctacaagaggaccagcatttatttccgatcttatttctgtgattcctaatgctcattactataaacgaggaacatatgacctgaaaaagatcgtccaatatgcaaatgagaaggaatttacttctgttattgtagtccacaccaatcgccgtgagccagatgctcttcttgtcattggtttacctgatggacctactgctcatttcaagctctcaaagctcatgctacggaaggatatcaagaatcatggaaagccaactagtcacaagcctgagctggttttgaccaacttcacaacacgtttgggtcatcgagttgggaggatgatacagtcactttttccacaagatcccgaatttcgtggacgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="7229" stop="4142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6929" g_stop="6824" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6823" i_stop="6732" i_length="92">
            <donor d_prob="0.697" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6731" g_stop="6648" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="190" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6647" i_stop="6511" i_length="137">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6510" g_stop="6441" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="260" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6440" i_stop="6302" i_length="139">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6301" g_stop="6219" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="343" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6218" i_stop="4793" i_length="1426">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4792" g_stop="4713" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="423" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4712" i_stop="4490" i_length="223">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4489" g_stop="4442" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="471" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E358898" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6929" e_stop="6824"/>
          <exon e_start="6731" e_stop="6648"/>
          <exon e_start="6510" e_stop="6441"/>
          <exon e_start="6301" e_stop="6219"/>
          <exon e_start="4792" e_stop="4713"/>
          <exon e_start="4489" e_stop="4442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTTGAAGCTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACAGTAAGCTTGTATAATTTGTGCTTCCCTATTGCTTTGATTATTGTTGACTTTGAATTTAATTCCACAAATAATTTCGTTATTCCATTCTTCAGAGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAGGTTCTTTCTTGCCTTCTCTTTTCTCATTCCTTTTATGTTTCTTGGTGATATGAATGAATGCCCTCATATTATTCAAATTCAAGGAGTTTTTCCATTGTACTAGTTCGAAATGTTCATTGCTTTTCTAACTTTTGCAGATCGTCCAATATGCAAATGAGAAGGAATTTACTTCTGTTATTGTAGTCCACACCAATCGCCGTGAGCCAGGTCATATTCTTGAACACATAGCTTTTTTTGATTCCTCTAAAAATAGCTATGGATTGTGTTCTTGCATTCATTCACCTTTCCAGTTTCTTTGTTGGTCTGAATTGCCAGCTTGATCATTTTTTTCATTTTCTTTCTTTAGATGCTCTTCTTGTCATTGGTTTACCTGATGGACCTACTGCTCATTTCAAGCTCTCAAAGCTCATGCTACGGAAGGATATCAAGGTTCGATAGTTCTCCTTCTAAATAGATCTTTCTCCCCCACCTTCACTGAAAAAATGCAGGGAAAGAAAAGGAACGTAGTAAGGGAACTTACAACTTATGCTGTTGTCTAATTGCTTCTGGTTGATGCATTTTACACTAAACATTACAGTTTTATTAATTCCTGCAAAAAGAATCAAATGAGAATGAGCTTGTCTTGAAGTCAGCTGAGTTGTATGAATTAAATCAACAGTCGAAGTTATTTGGTTCTCTTAGAAATTACTAATGTTTTCAAATAGATGATGTTGTGTCTGACTTTTTTGTGGAAATTTCATCCTATTGCATTGCCTCGTGCCATATTAACAATTAGTTTGGTTTTCCTCTACATTTTTTGTGAGTGATTTGCACGTATGTCATGCTGTCTTTGTACTATGATAATCAATCAGGTATCAAGAAGTTGTATTATGCAGGACAAGATTAAGTGCTACTCCCTACATTTCAAATTAATTGAAAATCAGTGAAATGTTGATGTGTTCCAACAAGGGAGTGAAGGTTAGGCTGCTAAAATTGAGATGTGAATGCTAAGATGGATGTACCGACATACGAGATTATATAAGATAAAAAATGATCACATTCGCCACAAAGTGCAAACAGCACACATTGAGGATACGATGAAAGAAAATCGTTTTGAGATGATTTGGTCATGTGCTGCGTTGACACCAGATACACCACAGTAAGTGAAGGTGATAAAATAGAAGAGATGGACCTAAACTTAAACGGAAGAAAGTTGTCTACAAAGACCTATGGTATCTTGAAATGAATGCTGAATTTGTGAAAGATATAACACAACAGTAGAGAAATATTTATATAGGTGAATATAAATTAATTGAGAATATATATTCTTTCCTTGGGGCCAACGCTTAGGACCATCTGCAGCCTTTGAACCTCGAGGATAATGGACTAAAATATGACCTCAACTAATAGCTTTCATGACTTGGTTCAAGTGACGAAGGTTGAGTGACTTGTGAGTTGTGACTTAGGTCAGAAGTTCAAGTCGCACGCCAATTCTAACCAAGCCTGGTACTTAAGTGGAGAAGGATGGAAAAACATACTTTAGTGTCAGCGGAATCACTAGGACATGCTCATTTTATTTTTTTGATACTAGACATGCTCATTTTAGCAAAAGTGAAAAAGTCTGTCTGGGATTATTTTTAAAAGGAGTCCACTTGAGAAGGTGAAAGCTGTGCGTTCTCTTCTTGGAGAGAGAAGCCTAATTTATTGCAAGTTAACCACCATTCAGAAAATTCCTTTTTCATAATGGTTCTAATGCTAATGCTGCTGTGTGTATCTATGTATAACTCAGCATAAGATGTTGTAAGTTAAAGCAATCAATCAATGAGGTTAATATGAATAGTAGATATTCAAGTAACGACTCCTTTTTTGCTTGCAGAATCATGGAAAGCCAACTAGTCACAAGCCTGAGCTGGTTTTGACCAACTTCACAACACGTTTGGGTCATCGAGTTGGGAGGTAGAGCCACTATGATTTTGCTGGATTACTGTAATTCTTGTAATTATTTCCAGCGACCAAGTATCTGAGACATTTTATACATTAATAAAAGTTGACACCATTTACTGATGGAGAGATAGAAATAAGATGAAAATCTATCTTTAACTTATAGCTCCTCTTTGAGAAACTTATGTTACAAGTGATTATCTAAGATAATAAATGTCTGCTGATTTTGTTCATGCAGGATGATACAGTCACTTTTTCCACAAGATCCCGAATTTCGTGGACGTCG</genome_strand>
        <mrna_strand>GTGTTTGAAGCTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCACGTTATAACTCTACA............................................................................................AGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAG.........................................................................................................................................ATCGTCCAATATGCAAATGAGAAGGAATTTACTTCTGTTATTGTAGTCCACACCAATCGCCGTGAGCCAG...........................................................................................................................................ATGCTCTTCTTGTCATTGGTTTACCTGATGGACCTACTGCTCATTTCAAGCTCTCAAAGCTCATGCTACGGAAGGATATCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCATGGAAAGCCAACTAGTCACAAGCCTGAGCTGGTTTTGACCAACTTCACAACACGTTTGGGTCATCGAGTTGGGAG...............................................................................................................................................................................................................................GATGATACAGTCACTTTTTCCACAAGATCCCGAATTTCGTGGACGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479349" ref_strand="+" ref_description="SGN-E479349 [cSTD-9-F21]">
      <seq>ttaaagctcgtgaagctgctgagaaaaaagcgcttgagctaggggatgagccctccacccgaagatggtacccccgtaccgattgaaaatacaagggagtcagatgagactggtctgtttaccctgatgatgaagagctatttgctggcaacgatgttgatgaatttagtgcagttctgaagaaatgagccgtagtccgaaaatattgattacaacatcccgttataactctacaagaagaccagcatttatttccgatcttatttctgtgattcctaatgctcattactataaacgaggaacatatgacctgaaaaagatcgtccaatatgcaaatgagaaggaatttacttctgttattgtagtccacaccaatcgccgtgaaccagatgcccttcttgtcattggtttacctgatggacctactgctcatttcaagctctcaaagctcatgctacggaaggatatcaagaatcatggaaagccaaccagtcacaagcctgaggctggttttgaccaacttacnaacacgtttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="9106" stop="4429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8806" g_stop="8757" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8756" i_stop="7114" i_length="1643">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7113" g_stop="7033" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="137" r_length="87" r_score="0.815"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7032" i_stop="6920" i_length="113">
            <donor d_prob="0.984" d_score="0.90"/>
            <acceptor a_prob="0.441" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6919" g_stop="6824" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="235" r_length="98" r_score="0.927"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6823" i_stop="6732" i_length="92">
            <donor d_prob="0.697" d_score="0.92"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6731" g_stop="6648" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="319" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6647" i_stop="6511" i_length="137">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6510" g_stop="6441" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="389" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6440" i_stop="6302" i_length="139">
            <donor d_prob="0.848" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6301" g_stop="6219" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="472" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6218" i_stop="4793" i_length="1426">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4792" g_stop="4729" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="537" r_length="65" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E479349" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8806" e_stop="8757"/>
          <exon e_start="7113" e_stop="7033"/>
          <exon e_start="6919" e_stop="6824"/>
          <exon e_start="6731" e_stop="6648"/>
          <exon e_start="6510" e_stop="6441"/>
          <exon e_start="6301" e_stop="6219"/>
          <exon e_start="4792" e_stop="4729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAGGTAAAGCGTCTACTGAAATTTACAATTTTTACGGATTTGGGGTTTAGGGTTGATTTTGTGAATTGACATAATGGGGTTGTTTATTTGTGGGAATTGATTGATGGGTCGATGTGTTTTTTGTTCAAATTTAAAAAATATCTGGTTCTTAGGGTGTAGTGTTTTGATTCTTGATTGTGAGGTTGGGCATTGTGGGATTGTTTCTTAATGCTACTTAATTAATGGTTAGATGATGTTTTGGATTGTTTAACAAATAACAACAACATATGGTTGTATTTAATTACCAGTAGCAAATCATTGCAATTCAAGCTGCCAACACAGCATGCTTGGTTCTTAGATGGATCACACAGTGTACTAGAGCTCTAACATGTCTCTATTGCTCAGTACTTATAGCTAAGTAAAACTTTTCTAATGCTAGGTTGGGATCTAACAATAGTTATGTAGGCTAACTCTTTGGCCATACTTTCGACATGTCTACTCTTATTCACAAATACTCTATTGTTCCTTTTAATATACAGCCCATACACACATTTGGCCAAAATATTTTTTAAAGATTTGAGCTTGCTGCGAATTCCCTTTCCCATGTTGAATACTCCCTTGTAGAGAATGGGCCCAATCTGAAAATGGAAAGGCGTGCTGCTGGATCCACATAAGCAATTTGTTCCACAGGTATATGGAGAATGGGCGTTGCACAAATAAGTGCTCAATAGATTCTTCCTTACTCTGGCAAAATACACATATTTTAGGTACATCCAGACCCCATTTAGTTAGTCTATCTGTTGTTGCCAACTTCCTATGCAGCATGAGCCACATAATAAAGCACGCTTTAGGTCTGGCTCCATTTTGAACACAAGGCATTTCCATCCTATTCTGGGTTGGTCCACTACAGAAATAAGTATATTTTGTCTGATCAAGCTCCCCTTCCTGTTATCTCTTTGTTGCATTTGATCAACTATATTTGTCCGCCCGTAATCTTTCTGGTCATCCAGCTCGCTTGACTATGGGGAGTCCATGGAGTCTGGGAAGGTGATGCAGCCCTACTCCTATCTTACCTTCAGAACGTAAGTTTAAGTATGTGGAGCAAATACAGTAGCAAAGAAACCATGTTGAAAACAATTAAGAAGAGAACAAGTAGCGACAACAAATAACACGATAACTGATGCAAACGGGAACTAAACAAATGCTTTACTGCCTATCAATTAAAAACCAAACCGCAGAGCAAAAAGTTAAAAATCTTACCTGTTAAGCAACTCAGTCATTTGGCCCATAAAGTATTCATGATACTAAAGAGTCTCCCCATAACATTGCTCATGCATATCCCATGGAGAATGGTACAAACCCAGTTCCAGACTATCATGGGAATTAATTAATGGGTGGATGTTGTTTTTTGCCGTCACGTCTAAAATTTGAAAATATTTGGTTCTTAGGGTGTAATGTTTTGATTATTGATTATGCAGTTGAACATTTTGGGATTGTTTGTTAAGGGTATTTAGTTAATGGGTGAATGATATTTTTGTGAACTGGCTGCCTAAATTTCCAATATCCAGTTCTTAGGGTTTAAGGTTTTTGATTGTTGATTGTCTGATTGAGCATTTTAGTTCCTTTTTCCAAACTGCTTAACGGGTCGATGCTCTTTTTGTGAACAGC-CTCCA-GCGAAGATGGTA-CCCCGTA-CGATTGAGAATACAAGGGAATCAGATGAGACT-GTCTGTTTA-CCTGATGATGAAGAGGTTTTCGATTATTCTTGTTTGATTCTTCAAGTTAATAGTGAAATATATGTAGTTTTATCACTGGAGGTTTGGCCATTAAATATTCTGGTGTTCCTCCTGATTTGTGTTTGAAGCTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAG-AACGAG-CGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACAGTAAGCTTGTATAATTTGTGCTTCCCTATTGCTTTGATTATTGTTGACTTTGAATTTAATTCCACAAATAATTTCGTTATTCCATTCTTCAGAGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAGGTTCTTTCTTGCCTTCTCTTTTCTCATTCCTTTTATGTTTCTTGGTGATATGAATGAATGCCCTCATATTATTCAAATTCAAGGAGTTTTTCCATTGTACTAGTTCGAAATGTTCATTGCTTTTCTAACTTTTGCAGATCGTCCAATATGCAAATGAGAAGGAATTTACTTCTGTTATTGTAGTCCACACCAATCGCCGTGAGCCAGGTCATATTCTTGAACACATAGCTTTTTTTGATTCCTCTAAAAATAGCTATGGATTGTGTTCTTGCATTCATTCACCTTTCCAGTTTCTTTGTTGGTCTGAATTGCCAGCTTGATCATTTTTTTCATTTTCTTTCTTTAGATGCTCTTCTTGTCATTGGTTTACCTGATGGACCTACTGCTCATTTCAAGCTCTCAAAGCTCATGCTACGGAAGGATATCAAGGTTCGATAGTTCTCCTTCTAAATAGATCTTTCTCCCCCACCTTCACTGAAAAAATGCAGGGAAAGAAAAGGAACGTAGTAAGGGAACTTACAACTTATGCTGTTGTCTAATTGCTTCTGGTTGATGCATTTTACACTAAACATTACAGTTTTATTAATTCCTGCAAAAAGAATCAAATGAGAATGAGCTTGTCTTGAAGTCAGCTGAGTTGTATGAATTAAATCAACAGTCGAAGTTATTTGGTTCTCTTAGAAATTACTAATGTTTTCAAATAGATGATGTTGTGTCTGACTTTTTTGTGGAAATTTCATCCTATTGCATTGCCTCGTGCCATATTAACAATTAGTTTGGTTTTCCTCTACATTTTTTGTGAGTGATTTGCACGTATGTCATGCTGTCTTTGTACTATGATAATCAATCAGGTATCAAGAAGTTGTATTATGCAGGACAAGATTAAGTGCTACTCCCTACATTTCAAATTAATTGAAAATCAGTGAAATGTTGATGTGTTCCAACAAGGGAGTGAAGGTTAGGCTGCTAAAATTGAGATGTGAATGCTAAGATGGATGTACCGACATACGAGATTATATAAGATAAAAAATGATCACATTCGCCACAAAGTGCAAACAGCACACATTGAGGATACGATGAAAGAAAATCGTTTTGAGATGATTTGGTCATGTGCTGCGTTGACACCAGATACACCACAGTAAGTGAAGGTGATAAAATAGAAGAGATGGACCTAAACTTAAACGGAAGAAAGTTGTCTACAAAGACCTATGGTATCTTGAAATGAATGCTGAATTTGTGAAAGATATAACACAACAGTAGAGAAATATTTATATAGGTGAATATAAATTAATTGAGAATATATATTCTTTCCTTGGGGCCAACGCTTAGGACCATCTGCAGCCTTTGAACCTCGAGGATAATGGACTAAAATATGACCTCAACTAATAGCTTTCATGACTTGGTTCAAGTGACGAAGGTTGAGTGACTTGTGAGTTGTGACTTAGGTCAGAAGTTCAAGTCGCACGCCAATTCTAACCAAGCCTGGTACTTAAGTGGAGAAGGATGGAAAAACATACTTTAGTGTCAGCGGAATCACTAGGACATGCTCATTTTATTTTTTTGATACTAGACATGCTCATTTTAGCAAAAGTGAAAAAGTCTGTCTGGGATTATTTTTAAAAGGAGTCCACTTGAGAAGGTGAAAGCTGTGCGTTCTCTTCTTGGAGAGAGAAGCCTAATTTATTGCAAGTTAACCACCATTCAGAAAATTCCTTTTTCATAATGGTTCTAATGCTAATGCTGCTGTGTGTATCTATGTATAACTCAGCATAAGATGTTGTAAGTTAAAGCAATCAATCAATGAGGTTAATATGAATAGTAGATATTCAAGTAACGACTCCTTTTTTGCTTGCAGAATCATGGAAAGCCAACTAGTCACAAGCCTGA-GCTGGTTTTGACCAACTTCACAACACGTTTGG</genome_strand>
        <mrna_strand>TTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCGCTTGAGCTAGGGGATGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTCCACCCGAAGATGGTACCCCCGTACCGATTGAAAATACAAGGGAGTCAGATGAGACTGGTCTGTTTACCCTGATGATGAAGAG.................................................................................................................CTATTTGCTGGCAACGATGTTGATGAATTTAGTGCAGTTCTGAAGAAATGAGCCGTAGTCCGAAAATATTGATTACAACATCCCGTTATAACTCTACA............................................................................................AGAAGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAG.........................................................................................................................................ATCGTCCAATATGCAAATGAGAAGGAATTTACTTCTGTTATTGTAGTCCACACCAATCGCCGTGAACCAG...........................................................................................................................................ATGCCCTTCTTGTCATTGGTTTACCTGATGGACCTACTGCTCATTTCAAGCTCTCAAAGCTCATGCTACGGAAGGATATCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCATGGAAAGCCAACCAGTCACAAGCCTGAGGCTGGTTTTGACCAACTTACNAACACGTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455018" ref_strand="+" ref_description="SGN-E455018 [cSTS-25-G11]">
      <seq>aaaaccttcttcacttttgctcttctccattagctccgccgcggagatcctttgtattacactttctatggggagaaaacggaacttgagcgaagatggtggcagggaagacgaagaagagaagccgatgaaagagagaagggtgaaagagaagcaggagggaagagaaagtatgcggccttcaatgattaagaacaaggagaaaagagcagttgtacatgctaagttgaagcagcagaagaaggttgataagaggaagaaggttaaagctcgtgaagctgctgagaaaaaagcgcttgagctaggggaggagcctccaccgaagatggtaccccgtacgattgaaaatacaagggagtcagatgagactgtctgtttacctgatgatgaagagctatttgctggcaacgatgttgatgaatttagtgcagttctgaagaatgagcgtagtccgaaaatattgattacaacatcccgttataactctacaagaggaccagcatttatttccgatcttatttctgtgattcctaatgctcattactataaacgaggaacatatgacctgaaaaagatcgtccaatatgcaaatgagaaggaatttacttctgttattgtagtccacaccaatcgccgtgaaccagatgcccttcttgtcattggtttacctgatggacctactgctcatttcaagctctcaaagctcatgctacggaaggatatcaagaatcatggaaagccaaccagtcacaagcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="9369" stop="4462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9069" g_stop="8757" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8756" i_stop="7114" i_length="1643">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7113" g_stop="7033" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="394" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7032" i_stop="6920" i_length="113">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.441" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6919" g_stop="6824" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="490" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6823" i_stop="6732" i_length="92">
            <donor d_prob="0.697" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6731" g_stop="6648" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="574" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6647" i_stop="6511" i_length="137">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6510" g_stop="6441" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="644" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6440" i_stop="6302" i_length="139">
            <donor d_prob="0.848" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6301" g_stop="6219" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="727" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6218" i_stop="4793" i_length="1426">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4792" g_stop="4762" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="758" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E455018" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9069" e_stop="8757"/>
          <exon e_start="7113" e_stop="7033"/>
          <exon e_start="6919" e_stop="6824"/>
          <exon e_start="6731" e_stop="6648"/>
          <exon e_start="6510" e_stop="6441"/>
          <exon e_start="6301" e_stop="6219"/>
          <exon e_start="4792" e_stop="4762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCTTCTTCCATTTTGCTCTTCTCCATTAGCTCCGCCGCCGACATCCTCTGCACTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAGGTAAAGCGTCTACTGAAATTTACAATTTTTACGGATTTGGGGTTTAGGGTTGATTTTGTGAATTGACATAATGGGGTTGTTTATTTGTGGGAATTGATTGATGGGTCGATGTGTTTTTTGTTCAAATTTAAAAAATATCTGGTTCTTAGGGTGTAGTGTTTTGATTCTTGATTGTGAGGTTGGGCATTGTGGGATTGTTTCTTAATGCTACTTAATTAATGGTTAGATGATGTTTTGGATTGTTTAACAAATAACAACAACATATGGTTGTATTTAATTACCAGTAGCAAATCATTGCAATTCAAGCTGCCAACACAGCATGCTTGGTTCTTAGATGGATCACACAGTGTACTAGAGCTCTAACATGTCTCTATTGCTCAGTACTTATAGCTAAGTAAAACTTTTCTAATGCTAGGTTGGGATCTAACAATAGTTATGTAGGCTAACTCTTTGGCCATACTTTCGACATGTCTACTCTTATTCACAAATACTCTATTGTTCCTTTTAATATACAGCCCATACACACATTTGGCCAAAATATTTTTTAAAGATTTGAGCTTGCTGCGAATTCCCTTTCCCATGTTGAATACTCCCTTGTAGAGAATGGGCCCAATCTGAAAATGGAAAGGCGTGCTGCTGGATCCACATAAGCAATTTGTTCCACAGGTATATGGAGAATGGGCGTTGCACAAATAAGTGCTCAATAGATTCTTCCTTACTCTGGCAAAATACACATATTTTAGGTACATCCAGACCCCATTTAGTTAGTCTATCTGTTGTTGCCAACTTCCTATGCAGCATGAGCCACATAATAAAGCACGCTTTAGGTCTGGCTCCATTTTGAACACAAGGCATTTCCATCCTATTCTGGGTTGGTCCACTACAGAAATAAGTATATTTTGTCTGATCAAGCTCCCCTTCCTGTTATCTCTTTGTTGCATTTGATCAACTATATTTGTCCGCCCGTAATCTTTCTGGTCATCCAGCTCGCTTGACTATGGGGAGTCCATGGAGTCTGGGAAGGTGATGCAGCCCTACTCCTATCTTACCTTCAGAACGTAAGTTTAAGTATGTGGAGCAAATACAGTAGCAAAGAAACCATGTTGAAAACAATTAAGAAGAGAACAAGTAGCGACAACAAATAACACGATAACTGATGCAAACGGGAACTAAACAAATGCTTTACTGCCTATCAATTAAAAACCAAACCGCAGAGCAAAAAGTTAAAAATCTTACCTGTTAAGCAACTCAGTCATTTGGCCCATAAAGTATTCATGATACTAAAGAGTCTCCCCATAACATTGCTCATGCATATCCCATGGAGAATGGTACAAACCCAGTTCCAGACTATCATGGGAATTAATTAATGGGTGGATGTTGTTTTTTGCCGTCACGTCTAAAATTTGAAAATATTTGGTTCTTAGGGTGTAATGTTTTGATTATTGATTATGCAGTTGAACATTTTGGGATTGTTTGTTAAGGGTATTTAGTTAATGGGTGAATGATATTTTTGTGAACTGGCTGCCTAAATTTCCAATATCCAGTTCTTAGGGTTTAAGGTTTTTGATTGTTGATTGTCTGATTGAGCATTTTAGTTCCTTTTTCCAAACTGCTTAACGGGTCGATGCTCTTTTTGTGAACAGCCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAGGTTTTCGATTATTCTTGTTTGATTCTTCAAGTTAATAGTGAAATATATGTAGTTTTATCACTGGAGGTTTGGCCATTAAATATTCTGGTGTTCCTCCTGATTTGTGTTTGAAGCTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACAGTAAGCTTGTATAATTTGTGCTTCCCTATTGCTTTGATTATTGTTGACTTTGAATTTAATTCCACAAATAATTTCGTTATTCCATTCTTCAGAGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAGGTTCTTTCTTGCCTTCTCTTTTCTCATTCCTTTTATGTTTCTTGGTGATATGAATGAATGCCCTCATATTATTCAAATTCAAGGAGTTTTTCCATTGTACTAGTTCGAAATGTTCATTGCTTTTCTAACTTTTGCAGATCGTCCAATATGCAAATGAGAAGGAATTTACTTCTGTTATTGTAGTCCACACCAATCGCCGTGAGCCAGGTCATATTCTTGAACACATAGCTTTTTTTGATTCCTCTAAAAATAGCTATGGATTGTGTTCTTGCATTCATTCACCTTTCCAGTTTCTTTGTTGGTCTGAATTGCCAGCTTGATCATTTTTTTCATTTTCTTTCTTTAGATGCTCTTCTTGTCATTGGTTTACCTGATGGACCTACTGCTCATTTCAAGCTCTCAAAGCTCATGCTACGGAAGGATATCAAGGTTCGATAGTTCTCCTTCTAAATAGATCTTTCTCCCCCACCTTCACTGAAAAAATGCAGGGAAAGAAAAGGAACGTAGTAAGGGAACTTACAACTTATGCTGTTGTCTAATTGCTTCTGGTTGATGCATTTTACACTAAACATTACAGTTTTATTAATTCCTGCAAAAAGAATCAAATGAGAATGAGCTTGTCTTGAAGTCAGCTGAGTTGTATGAATTAAATCAACAGTCGAAGTTATTTGGTTCTCTTAGAAATTACTAATGTTTTCAAATAGATGATGTTGTGTCTGACTTTTTTGTGGAAATTTCATCCTATTGCATTGCCTCGTGCCATATTAACAATTAGTTTGGTTTTCCTCTACATTTTTTGTGAGTGATTTGCACGTATGTCATGCTGTCTTTGTACTATGATAATCAATCAGGTATCAAGAAGTTGTATTATGCAGGACAAGATTAAGTGCTACTCCCTACATTTCAAATTAATTGAAAATCAGTGAAATGTTGATGTGTTCCAACAAGGGAGTGAAGGTTAGGCTGCTAAAATTGAGATGTGAATGCTAAGATGGATGTACCGACATACGAGATTATATAAGATAAAAAATGATCACATTCGCCACAAAGTGCAAACAGCACACATTGAGGATACGATGAAAGAAAATCGTTTTGAGATGATTTGGTCATGTGCTGCGTTGACACCAGATACACCACAGTAAGTGAAGGTGATAAAATAGAAGAGATGGACCTAAACTTAAACGGAAGAAAGTTGTCTACAAAGACCTATGGTATCTTGAAATGAATGCTGAATTTGTGAAAGATATAACACAACAGTAGAGAAATATTTATATAGGTGAATATAAATTAATTGAGAATATATATTCTTTCCTTGGGGCCAACGCTTAGGACCATCTGCAGCCTTTGAACCTCGAGGATAATGGACTAAAATATGACCTCAACTAATAGCTTTCATGACTTGGTTCAAGTGACGAAGGTTGAGTGACTTGTGAGTTGTGACTTAGGTCAGAAGTTCAAGTCGCACGCCAATTCTAACCAAGCCTGGTACTTAAGTGGAGAAGGATGGAAAAACATACTTTAGTGTCAGCGGAATCACTAGGACATGCTCATTTTATTTTTTTGATACTAGACATGCTCATTTTAGCAAAAGTGAAAAAGTCTGTCTGGGATTATTTTTAAAAGGAGTCCACTTGAGAAGGTGAAAGCTGTGCGTTCTCTTCTTGGAGAGAGAAGCCTAATTTATTGCAAGTTAACCACCATTCAGAAAATTCCTTTTTCATAATGGTTCTAATGCTAATGCTGCTGTGTGTATCTATGTATAACTCAGCATAAGATGTTGTAAGTTAAAGCAATCAATCAATGAGGTTAATATGAATAGTAGATATTCAAGTAACGACTCCTTTTTTGCTTGCAGAATCATGGAAAGCCAACTAGTCACAAGCCTG</genome_strand>
        <mrna_strand>AAAACCTTCTTCACTTTTGCTCTTCTCCATTAGCTCCGCCGCGGAGATCCTTTGTATTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCAGGGAAGACGAAGAAGAGAAGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGTTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGATAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCGCTTGAGCTAGGGGAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCACCGAAGATGGTACCCCGTACGATTGAAAATACAAGGGAGTCAGATGAGACTGTCTGTTTACCTGATGATGAAGAG.................................................................................................................CTATTTGCTGGCAACGATGTTGATGAATTTAGTGCAGTTCTGAAGAATGAGCGTAGTCCGAAAATATTGATTACAACATCCCGTTATAACTCTACA............................................................................................AGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAG.........................................................................................................................................ATCGTCCAATATGCAAATGAGAAGGAATTTACTTCTGTTATTGTAGTCCACACCAATCGCCGTGAACCAG...........................................................................................................................................ATGCCCTTCTTGTCATTGGTTTACCTGATGGACCTACTGCTCATTTCAAGCTCTCAAAGCTCATGCTACGGAAGGATATCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCATGGAAAGCCAACCAGTCACAAGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586088" ref_strand="+" ref_description="SGN-E586088 [73513]">
      <seq>aactagtggatcccccgcggctgcatgcggagatcctttgtattacactttctatggggagaaaacggaacttgagcgaagatggtggcagggaagacgaagaagagaagccgatgaaagagagaagggtgaaagagaagcaggagggaagagaaagtatgcggccttcaatgattaagaacaaggagaaaatagcagttgtacatgctaagttgaagcagcagaagaaggttgataagaggaagaaggttaaagctcgtgaagctgctgagaaaaaagcgcttgagctaggggaggagcctccaccgaagatggtaccccgtacgattgaaaatacaagggagtcagatgagactgtctgtttacctgatgatgaagagctatttgctggcaacgatgttgatgaatttagtgcagttctgaagaatgagcgtagtccgaaaatattgattacaacatcccgttataactctacaagaggaccagcatttatttccgatcttatttctgtgattcctaatgctcattactataaacgaggaacatatgacctgaaaaagatcgtccaatatgcaaatgagaaggaatttacttctgttattgtagtccacaccaatcgccgtgaaccagatgcccttcttgtcattggtttacctgatggacctactgctcatttcaaagctctcaaagctcatgctacggaaggatatcaagaatcatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="9329" stop="5910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9036" g_stop="8757" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="299" r_length="279" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8756" i_stop="7114" i_length="1643">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7113" g_stop="7033" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="380" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7032" i_stop="6920" i_length="113">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.441" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6919" g_stop="6824" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="476" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6823" i_stop="6732" i_length="92">
            <donor d_prob="0.697" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6731" g_stop="6648" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="560" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6647" i_stop="6511" i_length="137">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6510" g_stop="6441" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="630" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6440" i_stop="6302" i_length="139">
            <donor d_prob="0.848" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6301" g_stop="6219" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="714" r_length="84" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E586088" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9036" e_stop="8757"/>
          <exon e_start="7113" e_stop="7033"/>
          <exon e_start="6919" e_stop="6824"/>
          <exon e_start="6731" e_stop="6648"/>
          <exon e_start="6510" e_stop="6441"/>
          <exon e_start="6301" e_stop="6219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGCCGCCGACATCCTCTGCACTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAGGTAAAGCGTCTACTGAAATTTACAATTTTTACGGATTTGGGGTTTAGGGTTGATTTTGTGAATTGACATAATGGGGTTGTTTATTTGTGGGAATTGATTGATGGGTCGATGTGTTTTTTGTTCAAATTTAAAAAATATCTGGTTCTTAGGGTGTAGTGTTTTGATTCTTGATTGTGAGGTTGGGCATTGTGGGATTGTTTCTTAATGCTACTTAATTAATGGTTAGATGATGTTTTGGATTGTTTAACAAATAACAACAACATATGGTTGTATTTAATTACCAGTAGCAAATCATTGCAATTCAAGCTGCCAACACAGCATGCTTGGTTCTTAGATGGATCACACAGTGTACTAGAGCTCTAACATGTCTCTATTGCTCAGTACTTATAGCTAAGTAAAACTTTTCTAATGCTAGGTTGGGATCTAACAATAGTTATGTAGGCTAACTCTTTGGCCATACTTTCGACATGTCTACTCTTATTCACAAATACTCTATTGTTCCTTTTAATATACAGCCCATACACACATTTGGCCAAAATATTTTTTAAAGATTTGAGCTTGCTGCGAATTCCCTTTCCCATGTTGAATACTCCCTTGTAGAGAATGGGCCCAATCTGAAAATGGAAAGGCGTGCTGCTGGATCCACATAAGCAATTTGTTCCACAGGTATATGGAGAATGGGCGTTGCACAAATAAGTGCTCAATAGATTCTTCCTTACTCTGGCAAAATACACATATTTTAGGTACATCCAGACCCCATTTAGTTAGTCTATCTGTTGTTGCCAACTTCCTATGCAGCATGAGCCACATAATAAAGCACGCTTTAGGTCTGGCTCCATTTTGAACACAAGGCATTTCCATCCTATTCTGGGTTGGTCCACTACAGAAATAAGTATATTTTGTCTGATCAAGCTCCCCTTCCTGTTATCTCTTTGTTGCATTTGATCAACTATATTTGTCCGCCCGTAATCTTTCTGGTCATCCAGCTCGCTTGACTATGGGGAGTCCATGGAGTCTGGGAAGGTGATGCAGCCCTACTCCTATCTTACCTTCAGAACGTAAGTTTAAGTATGTGGAGCAAATACAGTAGCAAAGAAACCATGTTGAAAACAATTAAGAAGAGAACAAGTAGCGACAACAAATAACACGATAACTGATGCAAACGGGAACTAAACAAATGCTTTACTGCCTATCAATTAAAAACCAAACCGCAGAGCAAAAAGTTAAAAATCTTACCTGTTAAGCAACTCAGTCATTTGGCCCATAAAGTATTCATGATACTAAAGAGTCTCCCCATAACATTGCTCATGCATATCCCATGGAGAATGGTACAAACCCAGTTCCAGACTATCATGGGAATTAATTAATGGGTGGATGTTGTTTTTTGCCGTCACGTCTAAAATTTGAAAATATTTGGTTCTTAGGGTGTAATGTTTTGATTATTGATTATGCAGTTGAACATTTTGGGATTGTTTGTTAAGGGTATTTAGTTAATGGGTGAATGATATTTTTGTGAACTGGCTGCCTAAATTTCCAATATCCAGTTCTTAGGGTTTAAGGTTTTTGATTGTTGATTGTCTGATTGAGCATTTTAGTTCCTTTTTCCAAACTGCTTAACGGGTCGATGCTCTTTTTGTGAACAGCCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAGGTTTTCGATTATTCTTGTTTGATTCTTCAAGTTAATAGTGAAATATATGTAGTTTTATCACTGGAGGTTTGGCCATTAAATATTCTGGTGTTCCTCCTGATTTGTGTTTGAAGCTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACAGTAAGCTTGTATAATTTGTGCTTCCCTATTGCTTTGATTATTGTTGACTTTGAATTTAATTCCACAAATAATTTCGTTATTCCATTCTTCAGAGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAGGTTCTTTCTTGCCTTCTCTTTTCTCATTCCTTTTATGTTTCTTGGTGATATGAATGAATGCCCTCATATTATTCAAATTCAAGGAGTTTTTCCATTGTACTAGTTCGAAATGTTCATTGCTTTTCTAACTTTTGCAGATCGTCCAATATGCAAATGAGAAGGAATTTACTTCTGTTATTGTAGTCCACACCAATCGCCGTGAGCCAGGTCATATTCTTGAACACATAGCTTTTTTTGATTCCTCTAAAAATAGCTATGGATTGTGTTCTTGCATTCATTCACCTTTCCAGTTTCTTTGTTGGTCTGAATTGCCAGCTTGATCATTTTTTTCATTTTCTTTCTTTAGATGCTCTTCTTGTCATTGGTTTACCTGATGGACCTACTGCTCATTTC-AAGCTCTCAAAGCTCATGCTACGGAAGGATATCAAG</genome_strand>
        <mrna_strand>CTGC-ATGCGGAGATCCTTTGTATTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCAGGGAAGACGAAGAAGAGAAGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAATAGCAGTTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGATAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCGCTTGAGCTAGGGGAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCACCGAAGATGGTACCCCGTACGATTGAAAATACAAGGGAGTCAGATGAGACTGTCTGTTTACCTGATGATGAAGAG.................................................................................................................CTATTTGCTGGCAACGATGTTGATGAATTTAGTGCAGTTCTGAAGAATGAGCGTAGTCCGAAAATATTGATTACAACATCCCGTTATAACTCTACA............................................................................................AGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAG.........................................................................................................................................ATCGTCCAATATGCAAATGAGAAGGAATTTACTTCTGTTATTGTAGTCCACACCAATCGCCGTGAACCAG...........................................................................................................................................ATGCCCTTCTTGTCATTGGTTTACCTGATGGACCTACTGCTCATTTCAAAGCTCTCAAAGCTCATGCTACGGAAGGATATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249552" ref_strand="+" ref_description="SGN-E249552 [cLEF-56-F20]">
      <seq>gaagggtgaaagagaagcaggagggaagagaaagtatgcggccttcaatgattaagaacaaggagaaaagagcagctgtacatgctaagttgaagcagcagaagaaggttgagaagaggaagaaggttaaagctcgtgaagctgctgagaaaaaagcacttgagctaggggaggagcctccagcgaagatggtaccccgtacgattgagaatacaagggaatcagatgagactgtctgtttacctgatgatgaagagctatttgctggcaacgatgttgatgagtttagtgcagttctgaagaacgagcgtagtccaaaaatattgattacaacatcccgttataactctacaagaggaccagcatttatttccgatcttatttctgtgattcctaatgctcattactataaacgaggaacatatgacctgaaaaagatcgtccaatatgcaaatgagaaggaatttacttctgttattgtagtccacaccaatcgccgtgagccagatgctcttcttgtcattggtttacctgatggacctactgctcatttcaagctctcaaagctcatgctacggaaggatatcaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="9232" stop="5919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8932" g_stop="8757" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8756" i_stop="7114" i_length="1643">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7113" g_stop="7033" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="257" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7032" i_stop="6920" i_length="113">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.441" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6919" g_stop="6824" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="353" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6823" i_stop="6732" i_length="92">
            <donor d_prob="0.697" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6731" g_stop="6648" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="437" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6647" i_stop="6511" i_length="137">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6510" g_stop="6441" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="507" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6440" i_stop="6302" i_length="139">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6301" g_stop="6219" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="590" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E249552" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8932" e_stop="8757"/>
          <exon e_start="7113" e_stop="7033"/>
          <exon e_start="6919" e_stop="6824"/>
          <exon e_start="6731" e_stop="6648"/>
          <exon e_start="6510" e_stop="6441"/>
          <exon e_start="6301" e_stop="6219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAGGTAAAGCGTCTACTGAAATTTACAATTTTTACGGATTTGGGGTTTAGGGTTGATTTTGTGAATTGACATAATGGGGTTGTTTATTTGTGGGAATTGATTGATGGGTCGATGTGTTTTTTGTTCAAATTTAAAAAATATCTGGTTCTTAGGGTGTAGTGTTTTGATTCTTGATTGTGAGGTTGGGCATTGTGGGATTGTTTCTTAATGCTACTTAATTAATGGTTAGATGATGTTTTGGATTGTTTAACAAATAACAACAACATATGGTTGTATTTAATTACCAGTAGCAAATCATTGCAATTCAAGCTGCCAACACAGCATGCTTGGTTCTTAGATGGATCACACAGTGTACTAGAGCTCTAACATGTCTCTATTGCTCAGTACTTATAGCTAAGTAAAACTTTTCTAATGCTAGGTTGGGATCTAACAATAGTTATGTAGGCTAACTCTTTGGCCATACTTTCGACATGTCTACTCTTATTCACAAATACTCTATTGTTCCTTTTAATATACAGCCCATACACACATTTGGCCAAAATATTTTTTAAAGATTTGAGCTTGCTGCGAATTCCCTTTCCCATGTTGAATACTCCCTTGTAGAGAATGGGCCCAATCTGAAAATGGAAAGGCGTGCTGCTGGATCCACATAAGCAATTTGTTCCACAGGTATATGGAGAATGGGCGTTGCACAAATAAGTGCTCAATAGATTCTTCCTTACTCTGGCAAAATACACATATTTTAGGTACATCCAGACCCCATTTAGTTAGTCTATCTGTTGTTGCCAACTTCCTATGCAGCATGAGCCACATAATAAAGCACGCTTTAGGTCTGGCTCCATTTTGAACACAAGGCATTTCCATCCTATTCTGGGTTGGTCCACTACAGAAATAAGTATATTTTGTCTGATCAAGCTCCCCTTCCTGTTATCTCTTTGTTGCATTTGATCAACTATATTTGTCCGCCCGTAATCTTTCTGGTCATCCAGCTCGCTTGACTATGGGGAGTCCATGGAGTCTGGGAAGGTGATGCAGCCCTACTCCTATCTTACCTTCAGAACGTAAGTTTAAGTATGTGGAGCAAATACAGTAGCAAAGAAACCATGTTGAAAACAATTAAGAAGAGAACAAGTAGCGACAACAAATAACACGATAACTGATGCAAACGGGAACTAAACAAATGCTTTACTGCCTATCAATTAAAAACCAAACCGCAGAGCAAAAAGTTAAAAATCTTACCTGTTAAGCAACTCAGTCATTTGGCCCATAAAGTATTCATGATACTAAAGAGTCTCCCCATAACATTGCTCATGCATATCCCATGGAGAATGGTACAAACCCAGTTCCAGACTATCATGGGAATTAATTAATGGGTGGATGTTGTTTTTTGCCGTCACGTCTAAAATTTGAAAATATTTGGTTCTTAGGGTGTAATGTTTTGATTATTGATTATGCAGTTGAACATTTTGGGATTGTTTGTTAAGGGTATTTAGTTAATGGGTGAATGATATTTTTGTGAACTGGCTGCCTAAATTTCCAATATCCAGTTCTTAGGGTTTAAGGTTTTTGATTGTTGATTGTCTGATTGAGCATTTTAGTTCCTTTTTCCAAACTGCTTAACGGGTCGATGCTCTTTTTGTGAACAGCCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAGGTTTTCGATTATTCTTGTTTGATTCTTCAAGTTAATAGTGAAATATATGTAGTTTTATCACTGGAGGTTTGGCCATTAAATATTCTGGTGTTCCTCCTGATTTGTGTTTGAAGCTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACAGTAAGCTTGTATAATTTGTGCTTCCCTATTGCTTTGATTATTGTTGACTTTGAATTTAATTCCACAAATAATTTCGTTATTCCATTCTTCAGAGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAGGTTCTTTCTTGCCTTCTCTTTTCTCATTCCTTTTATGTTTCTTGGTGATATGAATGAATGCCCTCATATTATTCAAATTCAAGGAGTTTTTCCATTGTACTAGTTCGAAATGTTCATTGCTTTTCTAACTTTTGCAGATCGTCCAATATGCAAATGAGAAGGAATTTACTTCTGTTATTGTAGTCCACACCAATCGCCGTGAGCCAGGTCATATTCTTGAACACATAGCTTTTTTTGATTCCTCTAAAAATAGCTATGGATTGTGTTCTTGCATTCATTCACCTTTCCAGTTTCTTTGTTGGTCTGAATTGCCAGCTTGATCATTTTTTTCATTTTCTTTCTTTAGATGCTCTTCTTGTCATTGGTTTACCTGATGGACCTACTGCTCATTTCAAGCTCTCAAAGCTCATGCTACGGAAGGATATCAAG</genome_strand>
        <mrna_strand>GAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAG.................................................................................................................CTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACA............................................................................................AGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAG.........................................................................................................................................ATCGTCCAATATGCAAATGAGAAGGAATTTACTTCTGTTATTGTAGTCCACACCAATCGCCGTGAGCCAG...........................................................................................................................................ATGCTCTTCTTGTCATTGGTTTACCTGATGGACCTACTGCTCATTTCAAGCTCTCAAAGCTCATGCTACGGAAGGATATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211374" ref_strand="+" ref_description="SGN-E211374 [cLEC-67-C19]">
      <seq>tctgcactacactttctatggggagaaaacggaacttgagcgaagatggtggcggggaagacgaagaagagaggccgatgaaagagagaagggtgaaagagaagcaggagggaagagaaagtatgcggccttcaatgattaagaacaaggagaaaagagcagctgtacatgctaagttgaagcagcagaagaaggttgagaagaggaagaaggttaaagctcgtgaagctgctgagaaaaaagcacttgagctaggggaggagcctccagcgaagatggtaccccgtacgattgagaatacaagggaatcagatgagactgtctgtttacctgatgatgaagagctatttgctggcaacgatgttgatgagtttagtgcagttctgaagaacgagcgtagtccaaaaatattgattacaacatcccgttataactctacaagaggaccagcatttatttccgatcttatttctgtgattcctaatgctcattactataaacgaggaacatatgacctgaaaaagatcgtccaatatgcaaatgagaanggatttacttctgttattgtagtccacaccaatcgccgtgagccagatgctcttcttgtcattggnttacctgatgggactactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="9319" stop="5963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9019" g_stop="8757" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8756" i_stop="7114" i_length="1643">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7113" g_stop="7033" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="344" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7032" i_stop="6920" i_length="113">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.441" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6919" g_stop="6824" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="440" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6823" i_stop="6732" i_length="92">
            <donor d_prob="0.697" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6731" g_stop="6648" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="524" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6647" i_stop="6511" i_length="137">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6510" g_stop="6441" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="594" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6440" i_stop="6302" i_length="139">
            <donor d_prob="0.848" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6301" g_stop="6263" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="633" r_length="39" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E211374" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9019" e_stop="8757"/>
          <exon e_start="7113" e_stop="7033"/>
          <exon e_start="6919" e_stop="6824"/>
          <exon e_start="6731" e_stop="6648"/>
          <exon e_start="6510" e_stop="6441"/>
          <exon e_start="6301" e_stop="6263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCACTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAGGTAAAGCGTCTACTGAAATTTACAATTTTTACGGATTTGGGGTTTAGGGTTGATTTTGTGAATTGACATAATGGGGTTGTTTATTTGTGGGAATTGATTGATGGGTCGATGTGTTTTTTGTTCAAATTTAAAAAATATCTGGTTCTTAGGGTGTAGTGTTTTGATTCTTGATTGTGAGGTTGGGCATTGTGGGATTGTTTCTTAATGCTACTTAATTAATGGTTAGATGATGTTTTGGATTGTTTAACAAATAACAACAACATATGGTTGTATTTAATTACCAGTAGCAAATCATTGCAATTCAAGCTGCCAACACAGCATGCTTGGTTCTTAGATGGATCACACAGTGTACTAGAGCTCTAACATGTCTCTATTGCTCAGTACTTATAGCTAAGTAAAACTTTTCTAATGCTAGGTTGGGATCTAACAATAGTTATGTAGGCTAACTCTTTGGCCATACTTTCGACATGTCTACTCTTATTCACAAATACTCTATTGTTCCTTTTAATATACAGCCCATACACACATTTGGCCAAAATATTTTTTAAAGATTTGAGCTTGCTGCGAATTCCCTTTCCCATGTTGAATACTCCCTTGTAGAGAATGGGCCCAATCTGAAAATGGAAAGGCGTGCTGCTGGATCCACATAAGCAATTTGTTCCACAGGTATATGGAGAATGGGCGTTGCACAAATAAGTGCTCAATAGATTCTTCCTTACTCTGGCAAAATACACATATTTTAGGTACATCCAGACCCCATTTAGTTAGTCTATCTGTTGTTGCCAACTTCCTATGCAGCATGAGCCACATAATAAAGCACGCTTTAGGTCTGGCTCCATTTTGAACACAAGGCATTTCCATCCTATTCTGGGTTGGTCCACTACAGAAATAAGTATATTTTGTCTGATCAAGCTCCCCTTCCTGTTATCTCTTTGTTGCATTTGATCAACTATATTTGTCCGCCCGTAATCTTTCTGGTCATCCAGCTCGCTTGACTATGGGGAGTCCATGGAGTCTGGGAAGGTGATGCAGCCCTACTCCTATCTTACCTTCAGAACGTAAGTTTAAGTATGTGGAGCAAATACAGTAGCAAAGAAACCATGTTGAAAACAATTAAGAAGAGAACAAGTAGCGACAACAAATAACACGATAACTGATGCAAACGGGAACTAAACAAATGCTTTACTGCCTATCAATTAAAAACCAAACCGCAGAGCAAAAAGTTAAAAATCTTACCTGTTAAGCAACTCAGTCATTTGGCCCATAAAGTATTCATGATACTAAAGAGTCTCCCCATAACATTGCTCATGCATATCCCATGGAGAATGGTACAAACCCAGTTCCAGACTATCATGGGAATTAATTAATGGGTGGATGTTGTTTTTTGCCGTCACGTCTAAAATTTGAAAATATTTGGTTCTTAGGGTGTAATGTTTTGATTATTGATTATGCAGTTGAACATTTTGGGATTGTTTGTTAAGGGTATTTAGTTAATGGGTGAATGATATTTTTGTGAACTGGCTGCCTAAATTTCCAATATCCAGTTCTTAGGGTTTAAGGTTTTTGATTGTTGATTGTCTGATTGAGCATTTTAGTTCCTTTTTCCAAACTGCTTAACGGGTCGATGCTCTTTTTGTGAACAGCCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAGGTTTTCGATTATTCTTGTTTGATTCTTCAAGTTAATAGTGAAATATATGTAGTTTTATCACTGGAGGTTTGGCCATTAAATATTCTGGTGTTCCTCCTGATTTGTGTTTGAAGCTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACAGTAAGCTTGTATAATTTGTGCTTCCCTATTGCTTTGATTATTGTTGACTTTGAATTTAATTCCACAAATAATTTCGTTATTCCATTCTTCAGAGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAGGTTCTTTCTTGCCTTCTCTTTTCTCATTCCTTTTATGTTTCTTGGTGATATGAATGAATGCCCTCATATTATTCAAATTCAAGGAGTTTTTCCATTGTACTAGTTCGAAATGTTCATTGCTTTTCTAACTTTTGCAGATCGTCCAATATGCAAATGAGAAGGAATTTACTTCTGTTATTGTAGTCCACACCAATCGCCGTGAGCCAGGTCATATTCTTGAACACATAGCTTTTTTTGATTCCTCTAAAAATAGCTATGGATTGTGTTCTTGCATTCATTCACCTTTCCAGTTTCTTTGTTGGTCTGAATTGCCAGCTTGATCATTTTTTTCATTTTCTTTCTTTAGATGCTCTTCTTGTCATTGGTTTACCTGATGGACCTACTG</genome_strand>
        <mrna_strand>TCTGCACTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAG.................................................................................................................CTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACA............................................................................................AGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAG.........................................................................................................................................ATCGTCCAATATGCAAATGAGAANGGATTTACTTCTGTTATTGTAGTCCACACCAATCGCCGTGAGCCAG...........................................................................................................................................ATGCTCTTCTTGTCATTGGNTTACCTGATGGGACTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348558" ref_strand="+" ref_description="SGN-E348558 [cTOF-30-L4]">
      <seq>aaccttcttccattttgctcttctccattagctccgccgccgacatcctctgcactacactttctatggggagaaaacggaacttgagcgaagatggtggcggggaagacgaagaagagaggccgatgaaagagagaagggtgaaagagaagcaggagggaagagaaagtatgcggccttcaatgattaagaacaaggagaaaagagcagctgtacatgctaagttgaagcagcagaagaaggttgagaagaggaagaaggttaaagctcgtgaagctgctgagaaaaaagcacttgagctaggggaggagcctccagcgaagatggtaccccgtacgattgagaatacaagggaatcagatgagactgtctgtttacctgatgatgaagagctatttgctggcaacgatgttgatgagtttagtgcagttctgaagaacgagcgtagtccaaaaatattgattacaacatcccgttataactctacagtaagcttagaggaccagcatttatttccgatcttatttctgtgattcctaatgctcattactataaacgaggaacatatgacctgaaaaagatcgtncaatatgcaaatgagaaagaatttacttctgttattgtagtccacaccaatcgccgtgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="9367" stop="6144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9067" g_stop="8757" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8756" i_stop="7114" i_length="1643">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7113" g_stop="7033" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="392" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7032" i_stop="6920" i_length="113">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.441" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6919" g_stop="6816" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="496" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6815" i_stop="6732" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6731" g_stop="6648" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="580" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6647" i_stop="6511" i_length="137">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6510" g_stop="6444" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="647" r_length="67" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E348558" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9067" e_stop="8757"/>
          <exon e_start="7113" e_stop="7033"/>
          <exon e_start="6919" e_stop="6816"/>
          <exon e_start="6731" e_stop="6648"/>
          <exon e_start="6510" e_stop="6444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTTCTTCCATTTTGCTCTTCTCCATTAGCTCCGCCGCCGACATCCTCTGCACTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAGGTAAAGCGTCTACTGAAATTTACAATTTTTACGGATTTGGGGTTTAGGGTTGATTTTGTGAATTGACATAATGGGGTTGTTTATTTGTGGGAATTGATTGATGGGTCGATGTGTTTTTTGTTCAAATTTAAAAAATATCTGGTTCTTAGGGTGTAGTGTTTTGATTCTTGATTGTGAGGTTGGGCATTGTGGGATTGTTTCTTAATGCTACTTAATTAATGGTTAGATGATGTTTTGGATTGTTTAACAAATAACAACAACATATGGTTGTATTTAATTACCAGTAGCAAATCATTGCAATTCAAGCTGCCAACACAGCATGCTTGGTTCTTAGATGGATCACACAGTGTACTAGAGCTCTAACATGTCTCTATTGCTCAGTACTTATAGCTAAGTAAAACTTTTCTAATGCTAGGTTGGGATCTAACAATAGTTATGTAGGCTAACTCTTTGGCCATACTTTCGACATGTCTACTCTTATTCACAAATACTCTATTGTTCCTTTTAATATACAGCCCATACACACATTTGGCCAAAATATTTTTTAAAGATTTGAGCTTGCTGCGAATTCCCTTTCCCATGTTGAATACTCCCTTGTAGAGAATGGGCCCAATCTGAAAATGGAAAGGCGTGCTGCTGGATCCACATAAGCAATTTGTTCCACAGGTATATGGAGAATGGGCGTTGCACAAATAAGTGCTCAATAGATTCTTCCTTACTCTGGCAAAATACACATATTTTAGGTACATCCAGACCCCATTTAGTTAGTCTATCTGTTGTTGCCAACTTCCTATGCAGCATGAGCCACATAATAAAGCACGCTTTAGGTCTGGCTCCATTTTGAACACAAGGCATTTCCATCCTATTCTGGGTTGGTCCACTACAGAAATAAGTATATTTTGTCTGATCAAGCTCCCCTTCCTGTTATCTCTTTGTTGCATTTGATCAACTATATTTGTCCGCCCGTAATCTTTCTGGTCATCCAGCTCGCTTGACTATGGGGAGTCCATGGAGTCTGGGAAGGTGATGCAGCCCTACTCCTATCTTACCTTCAGAACGTAAGTTTAAGTATGTGGAGCAAATACAGTAGCAAAGAAACCATGTTGAAAACAATTAAGAAGAGAACAAGTAGCGACAACAAATAACACGATAACTGATGCAAACGGGAACTAAACAAATGCTTTACTGCCTATCAATTAAAAACCAAACCGCAGAGCAAAAAGTTAAAAATCTTACCTGTTAAGCAACTCAGTCATTTGGCCCATAAAGTATTCATGATACTAAAGAGTCTCCCCATAACATTGCTCATGCATATCCCATGGAGAATGGTACAAACCCAGTTCCAGACTATCATGGGAATTAATTAATGGGTGGATGTTGTTTTTTGCCGTCACGTCTAAAATTTGAAAATATTTGGTTCTTAGGGTGTAATGTTTTGATTATTGATTATGCAGTTGAACATTTTGGGATTGTTTGTTAAGGGTATTTAGTTAATGGGTGAATGATATTTTTGTGAACTGGCTGCCTAAATTTCCAATATCCAGTTCTTAGGGTTTAAGGTTTTTGATTGTTGATTGTCTGATTGAGCATTTTAGTTCCTTTTTCCAAACTGCTTAACGGGTCGATGCTCTTTTTGTGAACAGCCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAGGTTTTCGATTATTCTTGTTTGATTCTTCAAGTTAATAGTGAAATATATGTAGTTTTATCACTGGAGGTTTGGCCATTAAATATTCTGGTGTTCCTCCTGATTTGTGTTTGAAGCTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACAGTAAGCTTGTATAATTTGTGCTTCCCTATTGCTTTGATTATTGTTGACTTTGAATTTAATTCCACAAATAATTTCGTTATTCCATTCTTCAGAGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAGGTTCTTTCTTGCCTTCTCTTTTCTCATTCCTTTTATGTTTCTTGGTGATATGAATGAATGCCCTCATATTATTCAAATTCAAGGAGTTTTTCCATTGTACTAGTTCGAAATGTTCATTGCTTTTCTAACTTTTGCAGATCGTCCAATATGCAAATGAGAAGGAATTTACTTCTGTTATTGTAGTCCACACCAATCGCCGTGAGC</genome_strand>
        <mrna_strand>AACCTTCTTCCATTTTGCTCTTCTCCATTAGCTCCGCCGCCGACATCCTCTGCACTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAG.................................................................................................................CTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACAGTAAGCTT....................................................................................AGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAG.........................................................................................................................................ATCGTNCAATATGCAAATGAGAAAGAATTTACTTCTGTTATTGTAGTCCACACCAATCGCCGTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723072" ref_strand="+" ref_description="SGN-E723072 [FC19BB04]">
      <seq>gagctccgccgccgccctttaaagaattacactttctatggggagaaaacggaacttccccgaagatggtggcggggaagacgaagaagagaggccgatgaaagagagaagggtgaaagagaagcaggagggaagagaaagtatgcggccttcaatgattaagaacaaggagaaaagagcagctgtacatgctaagttgaagcagcagaagaaggttgagaagaggaagaaggttaaagctcgtgaagctgctgaaaaaaaagcacttgagctaggggaggagcctccagcgaaaatggtaccccgtacgattgagaatacaagggaatcaaatgagactgtctgtttacctgatgatgaaaagctatttgctggcaacgatgttgatgagtttagtgcagttctgaagaacgagcgtagtccaaaaatattgattacaacatcccgttataactctacaagaggaccggcatttatttccgatcttatttctgtgattcctaaggctcattactataaacgaggaacatttgacttgaaaaagatcgtccaatatgcaaatgagaaggattttacttctgttattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="9316" stop="6167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9039" g_stop="8757" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8756" i_stop="7114" i_length="1643">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7113" g_stop="7033" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="364" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7032" i_stop="6920" i_length="113">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.441" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6919" g_stop="6824" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="460" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6823" i_stop="6732" i_length="92">
            <donor d_prob="0.697" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6731" g_stop="6648" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="544" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6647" i_stop="6511" i_length="137">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6510" g_stop="6467" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="588" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E723072" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9039" e_stop="8757"/>
          <exon e_start="7113" e_stop="7033"/>
          <exon e_start="6919" e_stop="6824"/>
          <exon e_start="6731" e_stop="6648"/>
          <exon e_start="6510" e_stop="6467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTCCGCCGCCGACATCCTCTGCACTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAGGTAAAGCGTCTACTGAAATTTACAATTTTTACGGATTTGGGGTTTAGGGTTGATTTTGTGAATTGACATAATGGGGTTGTTTATTTGTGGGAATTGATTGATGGGTCGATGTGTTTTTTGTTCAAATTTAAAAAATATCTGGTTCTTAGGGTGTAGTGTTTTGATTCTTGATTGTGAGGTTGGGCATTGTGGGATTGTTTCTTAATGCTACTTAATTAATGGTTAGATGATGTTTTGGATTGTTTAACAAATAACAACAACATATGGTTGTATTTAATTACCAGTAGCAAATCATTGCAATTCAAGCTGCCAACACAGCATGCTTGGTTCTTAGATGGATCACACAGTGTACTAGAGCTCTAACATGTCTCTATTGCTCAGTACTTATAGCTAAGTAAAACTTTTCTAATGCTAGGTTGGGATCTAACAATAGTTATGTAGGCTAACTCTTTGGCCATACTTTCGACATGTCTACTCTTATTCACAAATACTCTATTGTTCCTTTTAATATACAGCCCATACACACATTTGGCCAAAATATTTTTTAAAGATTTGAGCTTGCTGCGAATTCCCTTTCCCATGTTGAATACTCCCTTGTAGAGAATGGGCCCAATCTGAAAATGGAAAGGCGTGCTGCTGGATCCACATAAGCAATTTGTTCCACAGGTATATGGAGAATGGGCGTTGCACAAATAAGTGCTCAATAGATTCTTCCTTACTCTGGCAAAATACACATATTTTAGGTACATCCAGACCCCATTTAGTTAGTCTATCTGTTGTTGCCAACTTCCTATGCAGCATGAGCCACATAATAAAGCACGCTTTAGGTCTGGCTCCATTTTGAACACAAGGCATTTCCATCCTATTCTGGGTTGGTCCACTACAGAAATAAGTATATTTTGTCTGATCAAGCTCCCCTTCCTGTTATCTCTTTGTTGCATTTGATCAACTATATTTGTCCGCCCGTAATCTTTCTGGTCATCCAGCTCGCTTGACTATGGGGAGTCCATGGAGTCTGGGAAGGTGATGCAGCCCTACTCCTATCTTACCTTCAGAACGTAAGTTTAAGTATGTGGAGCAAATACAGTAGCAAAGAAACCATGTTGAAAACAATTAAGAAGAGAACAAGTAGCGACAACAAATAACACGATAACTGATGCAAACGGGAACTAAACAAATGCTTTACTGCCTATCAATTAAAAACCAAACCGCAGAGCAAAAAGTTAAAAATCTTACCTGTTAAGCAACTCAGTCATTTGGCCCATAAAGTATTCATGATACTAAAGAGTCTCCCCATAACATTGCTCATGCATATCCCATGGAGAATGGTACAAACCCAGTTCCAGACTATCATGGGAATTAATTAATGGGTGGATGTTGTTTTTTGCCGTCACGTCTAAAATTTGAAAATATTTGGTTCTTAGGGTGTAATGTTTTGATTATTGATTATGCAGTTGAACATTTTGGGATTGTTTGTTAAGGGTATTTAGTTAATGGGTGAATGATATTTTTGTGAACTGGCTGCCTAAATTTCCAATATCCAGTTCTTAGGGTTTAAGGTTTTTGATTGTTGATTGTCTGATTGAGCATTTTAGTTCCTTTTTCCAAACTGCTTAACGGGTCGATGCTCTTTTTGTGAACAGCCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAGGTTTTCGATTATTCTTGTTTGATTCTTCAAGTTAATAGTGAAATATATGTAGTTTTATCACTGGAGGTTTGGCCATTAAATATTCTGGTGTTCCTCCTGATTTGTGTTTGAAGCTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACAGTAAGCTTGTATAATTTGTGCTTCCCTATTGCTTTGATTATTGTTGACTTTGAATTTAATTCCACAAATAATTTCGTTATTCCATTCTTCAGAGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAGGTTCTTTCTTGCCTTCTCTTTTCTCATTCCTTTTATGTTTCTTGGTGATATGAATGAATGCCCTCATATTATTCAAATTCAAGGAGTTTTTCCATTGTACTAGTTCGAAATGTTCATTGCTTTTCTAACTTTTGCAGATCGTCCAATATGCAAATGAGAAGGAATTTACTTCTGTTATTGT</genome_strand>
        <mrna_strand>GAGCTCCGCCGCCGCCCTTTAAAGAATTACACTTTCTATGGGGAGAAAACGGAACTTCCCCGAAGATGGTGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAAAAAAAAGCACTTGAGCTAGGGGAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCAGCGAAAATGGTACCCCGTACGATTGAGAATACAAGGGAATCAAATGAGACTGTCTGTTTACCTGATGATGAAAAG.................................................................................................................CTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACA............................................................................................AGAGGACCGGCATTTATTTCCGATCTTATTTCTGTGATTCCTAAGGCTCATTACTATAAACGAGGAACATTTGACTTGAAAAAG.........................................................................................................................................ATCGTCCAATATGCAAATGAGAAGGATTTTACTTCTGTTATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253524" ref_strand="+" ref_description="SGN-E253524 [cLEG-24-K2]">
      <seq>tcttcaatgattaagaacaaggagaaaagagcagctgtacatgctaagttgaagcagcagaagaaggttgagaagaggaagaaggttaaagctcgtgaagctgctgagaaaaaagcacttgagctaggggaggagcctccagcgaagatggtaccccgtacgattgagaatacaagggaatcagatgagactgtctgtttacctgatgatgaagagctatttgctggcaacgatgttgatgagtttagtgcagttctgaagaacgagcgtagtccaaaaatattgattacaacatcccgttataactctacaagaggaccagcatttatttccgatcttatttctgtgattcctaatgctcattactataaacgaggaacatatgacctgaaaaagatcgtccaatatgcaaatgagaaggaatttacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="9190" stop="6176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8891" g_stop="8757" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8756" i_stop="7114" i_length="1643">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7113" g_stop="7033" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="216" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7032" i_stop="6920" i_length="113">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.441" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6919" g_stop="6824" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="312" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6823" i_stop="6732" i_length="92">
            <donor d_prob="0.697" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6731" g_stop="6648" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="396" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6647" i_stop="6511" i_length="137">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6510" g_stop="6476" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="431" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E253524" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8891" e_stop="8757"/>
          <exon e_start="7113" e_stop="7033"/>
          <exon e_start="6919" e_stop="6824"/>
          <exon e_start="6731" e_stop="6648"/>
          <exon e_start="6510" e_stop="6476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAGGTAAAGCGTCTACTGAAATTTACAATTTTTACGGATTTGGGGTTTAGGGTTGATTTTGTGAATTGACATAATGGGGTTGTTTATTTGTGGGAATTGATTGATGGGTCGATGTGTTTTTTGTTCAAATTTAAAAAATATCTGGTTCTTAGGGTGTAGTGTTTTGATTCTTGATTGTGAGGTTGGGCATTGTGGGATTGTTTCTTAATGCTACTTAATTAATGGTTAGATGATGTTTTGGATTGTTTAACAAATAACAACAACATATGGTTGTATTTAATTACCAGTAGCAAATCATTGCAATTCAAGCTGCCAACACAGCATGCTTGGTTCTTAGATGGATCACACAGTGTACTAGAGCTCTAACATGTCTCTATTGCTCAGTACTTATAGCTAAGTAAAACTTTTCTAATGCTAGGTTGGGATCTAACAATAGTTATGTAGGCTAACTCTTTGGCCATACTTTCGACATGTCTACTCTTATTCACAAATACTCTATTGTTCCTTTTAATATACAGCCCATACACACATTTGGCCAAAATATTTTTTAAAGATTTGAGCTTGCTGCGAATTCCCTTTCCCATGTTGAATACTCCCTTGTAGAGAATGGGCCCAATCTGAAAATGGAAAGGCGTGCTGCTGGATCCACATAAGCAATTTGTTCCACAGGTATATGGAGAATGGGCGTTGCACAAATAAGTGCTCAATAGATTCTTCCTTACTCTGGCAAAATACACATATTTTAGGTACATCCAGACCCCATTTAGTTAGTCTATCTGTTGTTGCCAACTTCCTATGCAGCATGAGCCACATAATAAAGCACGCTTTAGGTCTGGCTCCATTTTGAACACAAGGCATTTCCATCCTATTCTGGGTTGGTCCACTACAGAAATAAGTATATTTTGTCTGATCAAGCTCCCCTTCCTGTTATCTCTTTGTTGCATTTGATCAACTATATTTGTCCGCCCGTAATCTTTCTGGTCATCCAGCTCGCTTGACTATGGGGAGTCCATGGAGTCTGGGAAGGTGATGCAGCCCTACTCCTATCTTACCTTCAGAACGTAAGTTTAAGTATGTGGAGCAAATACAGTAGCAAAGAAACCATGTTGAAAACAATTAAGAAGAGAACAAGTAGCGACAACAAATAACACGATAACTGATGCAAACGGGAACTAAACAAATGCTTTACTGCCTATCAATTAAAAACCAAACCGCAGAGCAAAAAGTTAAAAATCTTACCTGTTAAGCAACTCAGTCATTTGGCCCATAAAGTATTCATGATACTAAAGAGTCTCCCCATAACATTGCTCATGCATATCCCATGGAGAATGGTACAAACCCAGTTCCAGACTATCATGGGAATTAATTAATGGGTGGATGTTGTTTTTTGCCGTCACGTCTAAAATTTGAAAATATTTGGTTCTTAGGGTGTAATGTTTTGATTATTGATTATGCAGTTGAACATTTTGGGATTGTTTGTTAAGGGTATTTAGTTAATGGGTGAATGATATTTTTGTGAACTGGCTGCCTAAATTTCCAATATCCAGTTCTTAGGGTTTAAGGTTTTTGATTGTTGATTGTCTGATTGAGCATTTTAGTTCCTTTTTCCAAACTGCTTAACGGGTCGATGCTCTTTTTGTGAACAGCCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAGGTTTTCGATTATTCTTGTTTGATTCTTCAAGTTAATAGTGAAATATATGTAGTTTTATCACTGGAGGTTTGGCCATTAAATATTCTGGTGTTCCTCCTGATTTGTGTTTGAAGCTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACAGTAAGCTTGTATAATTTGTGCTTCCCTATTGCTTTGATTATTGTTGACTTTGAATTTAATTCCACAAATAATTTCGTTATTCCATTCTTCAGAGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAGGTTCTTTCTTGCCTTCTCTTTTCTCATTCCTTTTATGTTTCTTGGTGATATGAATGAATGCCCTCATATTATTCAAATTCAAGGAGTTTTTCCATTGTACTAGTTCGAAATGTTCATTGCTTTTCTAACTTTTGCAGATCGTCCAATATGCAAATGAGAAGGAATTTACTTC</genome_strand>
        <mrna_strand>TCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAG.................................................................................................................CTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACA............................................................................................AGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAG.........................................................................................................................................ATCGTCCAATATGCAAATGAGAAGGAATTTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236526" ref_strand="+" ref_description="SGN-E236526 [cLED-13-K3]">
      <seq>aagggtgaaagagaagcaggagggaagagaaagtatgcggccttcaatgattaagaacaaggagaaaagagcagctgtacatgctaagttgaagcagcagaagaaggttgagaagaggaagaaggttaaagctcgtgaagctgctgagaaaaaagcacttgagctaggggaggagcctccagcgaagatggtaccccgtacgattgagaatacaagggaatcagatgagactgtctgtttacctgatgatgaagagctatttgctggcaacgatgttgatgagtttagtgcagttctgaagaacgagcgtagtccaaaaattttgattacaacatcccgttataactctacaagaggaccagcatttatttccgatcttatttctgtgattcctaatgctcattactataaacgaggaacatatgacctgaaaaagatcgtccaatatgcaaatgagaaggaatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="9231" stop="6178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8931" g_stop="8757" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8756" i_stop="7114" i_length="1643">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7113" g_stop="7033" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="256" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7032" i_stop="6920" i_length="113">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.441" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6919" g_stop="6824" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="352" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6823" i_stop="6732" i_length="92">
            <donor d_prob="0.697" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6731" g_stop="6648" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="436" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6647" i_stop="6511" i_length="137">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6510" g_stop="6478" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="469" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E236526" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8931" e_stop="8757"/>
          <exon e_start="7113" e_stop="7033"/>
          <exon e_start="6919" e_stop="6824"/>
          <exon e_start="6731" e_stop="6648"/>
          <exon e_start="6510" e_stop="6478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAGGTAAAGCGTCTACTGAAATTTACAATTTTTACGGATTTGGGGTTTAGGGTTGATTTTGTGAATTGACATAATGGGGTTGTTTATTTGTGGGAATTGATTGATGGGTCGATGTGTTTTTTGTTCAAATTTAAAAAATATCTGGTTCTTAGGGTGTAGTGTTTTGATTCTTGATTGTGAGGTTGGGCATTGTGGGATTGTTTCTTAATGCTACTTAATTAATGGTTAGATGATGTTTTGGATTGTTTAACAAATAACAACAACATATGGTTGTATTTAATTACCAGTAGCAAATCATTGCAATTCAAGCTGCCAACACAGCATGCTTGGTTCTTAGATGGATCACACAGTGTACTAGAGCTCTAACATGTCTCTATTGCTCAGTACTTATAGCTAAGTAAAACTTTTCTAATGCTAGGTTGGGATCTAACAATAGTTATGTAGGCTAACTCTTTGGCCATACTTTCGACATGTCTACTCTTATTCACAAATACTCTATTGTTCCTTTTAATATACAGCCCATACACACATTTGGCCAAAATATTTTTTAAAGATTTGAGCTTGCTGCGAATTCCCTTTCCCATGTTGAATACTCCCTTGTAGAGAATGGGCCCAATCTGAAAATGGAAAGGCGTGCTGCTGGATCCACATAAGCAATTTGTTCCACAGGTATATGGAGAATGGGCGTTGCACAAATAAGTGCTCAATAGATTCTTCCTTACTCTGGCAAAATACACATATTTTAGGTACATCCAGACCCCATTTAGTTAGTCTATCTGTTGTTGCCAACTTCCTATGCAGCATGAGCCACATAATAAAGCACGCTTTAGGTCTGGCTCCATTTTGAACACAAGGCATTTCCATCCTATTCTGGGTTGGTCCACTACAGAAATAAGTATATTTTGTCTGATCAAGCTCCCCTTCCTGTTATCTCTTTGTTGCATTTGATCAACTATATTTGTCCGCCCGTAATCTTTCTGGTCATCCAGCTCGCTTGACTATGGGGAGTCCATGGAGTCTGGGAAGGTGATGCAGCCCTACTCCTATCTTACCTTCAGAACGTAAGTTTAAGTATGTGGAGCAAATACAGTAGCAAAGAAACCATGTTGAAAACAATTAAGAAGAGAACAAGTAGCGACAACAAATAACACGATAACTGATGCAAACGGGAACTAAACAAATGCTTTACTGCCTATCAATTAAAAACCAAACCGCAGAGCAAAAAGTTAAAAATCTTACCTGTTAAGCAACTCAGTCATTTGGCCCATAAAGTATTCATGATACTAAAGAGTCTCCCCATAACATTGCTCATGCATATCCCATGGAGAATGGTACAAACCCAGTTCCAGACTATCATGGGAATTAATTAATGGGTGGATGTTGTTTTTTGCCGTCACGTCTAAAATTTGAAAATATTTGGTTCTTAGGGTGTAATGTTTTGATTATTGATTATGCAGTTGAACATTTTGGGATTGTTTGTTAAGGGTATTTAGTTAATGGGTGAATGATATTTTTGTGAACTGGCTGCCTAAATTTCCAATATCCAGTTCTTAGGGTTTAAGGTTTTTGATTGTTGATTGTCTGATTGAGCATTTTAGTTCCTTTTTCCAAACTGCTTAACGGGTCGATGCTCTTTTTGTGAACAGCCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAGGTTTTCGATTATTCTTGTTTGATTCTTCAAGTTAATAGTGAAATATATGTAGTTTTATCACTGGAGGTTTGGCCATTAAATATTCTGGTGTTCCTCCTGATTTGTGTTTGAAGCTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACAGTAAGCTTGTATAATTTGTGCTTCCCTATTGCTTTGATTATTGTTGACTTTGAATTTAATTCCACAAATAATTTCGTTATTCCATTCTTCAGAGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAGGTTCTTTCTTGCCTTCTCTTTTCTCATTCCTTTTATGTTTCTTGGTGATATGAATGAATGCCCTCATATTATTCAAATTCAAGGAGTTTTTCCATTGTACTAGTTCGAAATGTTCATTGCTTTTCTAACTTTTGCAGATCGTCCAATATGCAAATGAGAAGGAATTTACT</genome_strand>
        <mrna_strand>AAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAG.................................................................................................................CTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATTTTGATTACAACATCCCGTTATAACTCTACA............................................................................................AGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAG.........................................................................................................................................ATCGTCCAATATGCAAATGAGAAGGAATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559260" ref_strand="+" ref_description="SGN-E559260 [18728]">
      <seq>gaggattagctccgccgcggagatcctttggtattacactttctatggggagaaaacggaacttgagcgaagatgctgacaggggaagacgaagaagagaagccgatgaaagagagaagggtgaaagagaagcaggagggaagagaaagtatgcggccttcaatgattaagaataaggagaaaagagcagctgtacatgctaagttgaagcagcagaagaaggttgagaagaggaagaaggttaaagctcgtgaagctgctgagaaaaaagcgcttgagctaggggaggagcctccaccgaagatggtaccccggtacgattgaaaatacaagggagtcagatgagactgtctgtttacctgatgatgaagagctatttgctggcaacgatgttgatgaatttagtgcagttctgaagaacgagcgtagtccgaaaatattgattacaacatcccgnttataactctacaagaggaccagcatttatttccgatcttatttctgtgattcctaatgctcattactataaacgaggaacatatgacctgaaaaagatcgtccaatatgcaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="9341" stop="6191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9036" g_stop="8757" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="291" r_length="282" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8756" i_stop="7114" i_length="1643">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7113" g_stop="7033" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="373" r_length="82" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7032" i_stop="6920" i_length="113">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.441" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6919" g_stop="6824" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="470" r_length="97" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6823" i_stop="6732" i_length="92">
            <donor d_prob="0.697" d_score="0.94"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6731" g_stop="6648" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="554" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6647" i_stop="6511" i_length="137">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6510" g_stop="6491" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="574" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E559260" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9036" e_stop="8757"/>
          <exon e_start="7113" e_stop="7033"/>
          <exon e_start="6919" e_stop="6824"/>
          <exon e_start="6731" e_stop="6648"/>
          <exon e_start="6510" e_stop="6491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGCCGCCGACATCCTCT-GCACTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGC-GGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAGGTAAAGCGTCTACTGAAATTTACAATTTTTACGGATTTGGGGTTTAGGGTTGATTTTGTGAATTGACATAATGGGGTTGTTTATTTGTGGGAATTGATTGATGGGTCGATGTGTTTTTTGTTCAAATTTAAAAAATATCTGGTTCTTAGGGTGTAGTGTTTTGATTCTTGATTGTGAGGTTGGGCATTGTGGGATTGTTTCTTAATGCTACTTAATTAATGGTTAGATGATGTTTTGGATTGTTTAACAAATAACAACAACATATGGTTGTATTTAATTACCAGTAGCAAATCATTGCAATTCAAGCTGCCAACACAGCATGCTTGGTTCTTAGATGGATCACACAGTGTACTAGAGCTCTAACATGTCTCTATTGCTCAGTACTTATAGCTAAGTAAAACTTTTCTAATGCTAGGTTGGGATCTAACAATAGTTATGTAGGCTAACTCTTTGGCCATACTTTCGACATGTCTACTCTTATTCACAAATACTCTATTGTTCCTTTTAATATACAGCCCATACACACATTTGGCCAAAATATTTTTTAAAGATTTGAGCTTGCTGCGAATTCCCTTTCCCATGTTGAATACTCCCTTGTAGAGAATGGGCCCAATCTGAAAATGGAAAGGCGTGCTGCTGGATCCACATAAGCAATTTGTTCCACAGGTATATGGAGAATGGGCGTTGCACAAATAAGTGCTCAATAGATTCTTCCTTACTCTGGCAAAATACACATATTTTAGGTACATCCAGACCCCATTTAGTTAGTCTATCTGTTGTTGCCAACTTCCTATGCAGCATGAGCCACATAATAAAGCACGCTTTAGGTCTGGCTCCATTTTGAACACAAGGCATTTCCATCCTATTCTGGGTTGGTCCACTACAGAAATAAGTATATTTTGTCTGATCAAGCTCCCCTTCCTGTTATCTCTTTGTTGCATTTGATCAACTATATTTGTCCGCCCGTAATCTTTCTGGTCATCCAGCTCGCTTGACTATGGGGAGTCCATGGAGTCTGGGAAGGTGATGCAGCCCTACTCCTATCTTACCTTCAGAACGTAAGTTTAAGTATGTGGAGCAAATACAGTAGCAAAGAAACCATGTTGAAAACAATTAAGAAGAGAACAAGTAGCGACAACAAATAACACGATAACTGATGCAAACGGGAACTAAACAAATGCTTTACTGCCTATCAATTAAAAACCAAACCGCAGAGCAAAAAGTTAAAAATCTTACCTGTTAAGCAACTCAGTCATTTGGCCCATAAAGTATTCATGATACTAAAGAGTCTCCCCATAACATTGCTCATGCATATCCCATGGAGAATGGTACAAACCCAGTTCCAGACTATCATGGGAATTAATTAATGGGTGGATGTTGTTTTTTGCCGTCACGTCTAAAATTTGAAAATATTTGGTTCTTAGGGTGTAATGTTTTGATTATTGATTATGCAGTTGAACATTTTGGGATTGTTTGTTAAGGGTATTTAGTTAATGGGTGAATGATATTTTTGTGAACTGGCTGCCTAAATTTCCAATATCCAGTTCTTAGGGTTTAAGGTTTTTGATTGTTGATTGTCTGATTGAGCATTTTAGTTCCTTTTTCCAAACTGCTTAACGGGTCGATGCTCTTTTTGTGAACAGCCTCCAGCGAAGATGGTACCCC-GTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAGGTTTTCGATTATTCTTGTTTGATTCTTCAAGTTAATAGTGAAATATATGTAGTTTTATCACTGGAGGTTTGGCCATTAAATATTCTGGTGTTCCTCCTGATTTGTGTTTGAAGCTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCG-TTATAACTCTACAGTAAGCTTGTATAATTTGTGCTTCCCTATTGCTTTGATTATTGTTGACTTTGAATTTAATTCCACAAATAATTTCGTTATTCCATTCTTCAGAGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAGGTTCTTTCTTGCCTTCTCTTTTCTCATTCCTTTTATGTTTCTTGGTGATATGAATGAATGCCCTCATATTATTCAAATTCAAGGAGTTTTTCCATTGTACTAGTTCGAAATGTTCATTGCTTTTCTAACTTTTGCAGATCGTCCAATATGCAAATGA</genome_strand>
        <mrna_strand>CTCCGCCGCGGAGATCCTTTGGTATTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGCTGACAGGGGAAGACGAAGAAGAGAAGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAATAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCGCTTGAGCTAGGGGAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCACCGAAGATGGTACCCCGGTACGATTGAAAATACAAGGGAGTCAGATGAGACTGTCTGTTTACCTGATGATGAAGAG.................................................................................................................CTATTTGCTGGCAACGATGTTGATGAATTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCGAAAATATTGATTACAACATCCCGNTTATAACTCTACA............................................................................................AGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAG.........................................................................................................................................ATCGTCCAATATGCAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449890" ref_strand="+" ref_description="SGN-E449890 [cSTS-7-F12]">
      <seq>gcccactccaaaaccttcttcacttttgctcttctccattagctccgccgcggagatcctttgtattacactttctatggggagaaaacggaacttgagcgaagatggtggcagggaagacgaagaagagaagccgatgaaagagagaagggtgaaagagaagcaggagggaagagaaagtatgcggccttcaatgattaagaacaaggagaaaagagcagttgtacatgctaagttgaagcagcagaagaaggttgataagaggaagaaggttaaagctcgtgaagctgctgagaaaaaagcgcttgagctaggggaggagcctccaccgaagatggtaccccgtacgattgaaaatacaagggagtcagatgagactgtctgtttacctgatgatgaagagctatttgctggcaacgatgttgatgaatttagtgcagttctgaagaatgagcgtagtccgaaaatattgattacaacatcccgttataactctacaagaggaccagcatttatttccgatcttatttctgtgattcctaatgctcattactattaacgaggaacatatgacctgaaaaagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="9375" stop="6346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9079" g_stop="8757" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8756" i_stop="7114" i_length="1643">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7113" g_stop="7033" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="403" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7032" i_stop="6920" i_length="113">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.441" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6919" g_stop="6824" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="499" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6823" i_stop="6732" i_length="92">
            <donor d_prob="0.697" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6731" g_stop="6648" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="583" r_length="84" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E449890" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9079" e_stop="8757"/>
          <exon e_start="7113" e_stop="7033"/>
          <exon e_start="6919" e_stop="6824"/>
          <exon e_start="6731" e_stop="6648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCACTACAAAACCTTCTTCCATTTTGCTCTTCTCCATTAGCTCCGCCGCCGACATCCTCTGCACTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAGGTAAAGCGTCTACTGAAATTTACAATTTTTACGGATTTGGGGTTTAGGGTTGATTTTGTGAATTGACATAATGGGGTTGTTTATTTGTGGGAATTGATTGATGGGTCGATGTGTTTTTTGTTCAAATTTAAAAAATATCTGGTTCTTAGGGTGTAGTGTTTTGATTCTTGATTGTGAGGTTGGGCATTGTGGGATTGTTTCTTAATGCTACTTAATTAATGGTTAGATGATGTTTTGGATTGTTTAACAAATAACAACAACATATGGTTGTATTTAATTACCAGTAGCAAATCATTGCAATTCAAGCTGCCAACACAGCATGCTTGGTTCTTAGATGGATCACACAGTGTACTAGAGCTCTAACATGTCTCTATTGCTCAGTACTTATAGCTAAGTAAAACTTTTCTAATGCTAGGTTGGGATCTAACAATAGTTATGTAGGCTAACTCTTTGGCCATACTTTCGACATGTCTACTCTTATTCACAAATACTCTATTGTTCCTTTTAATATACAGCCCATACACACATTTGGCCAAAATATTTTTTAAAGATTTGAGCTTGCTGCGAATTCCCTTTCCCATGTTGAATACTCCCTTGTAGAGAATGGGCCCAATCTGAAAATGGAAAGGCGTGCTGCTGGATCCACATAAGCAATTTGTTCCACAGGTATATGGAGAATGGGCGTTGCACAAATAAGTGCTCAATAGATTCTTCCTTACTCTGGCAAAATACACATATTTTAGGTACATCCAGACCCCATTTAGTTAGTCTATCTGTTGTTGCCAACTTCCTATGCAGCATGAGCCACATAATAAAGCACGCTTTAGGTCTGGCTCCATTTTGAACACAAGGCATTTCCATCCTATTCTGGGTTGGTCCACTACAGAAATAAGTATATTTTGTCTGATCAAGCTCCCCTTCCTGTTATCTCTTTGTTGCATTTGATCAACTATATTTGTCCGCCCGTAATCTTTCTGGTCATCCAGCTCGCTTGACTATGGGGAGTCCATGGAGTCTGGGAAGGTGATGCAGCCCTACTCCTATCTTACCTTCAGAACGTAAGTTTAAGTATGTGGAGCAAATACAGTAGCAAAGAAACCATGTTGAAAACAATTAAGAAGAGAACAAGTAGCGACAACAAATAACACGATAACTGATGCAAACGGGAACTAAACAAATGCTTTACTGCCTATCAATTAAAAACCAAACCGCAGAGCAAAAAGTTAAAAATCTTACCTGTTAAGCAACTCAGTCATTTGGCCCATAAAGTATTCATGATACTAAAGAGTCTCCCCATAACATTGCTCATGCATATCCCATGGAGAATGGTACAAACCCAGTTCCAGACTATCATGGGAATTAATTAATGGGTGGATGTTGTTTTTTGCCGTCACGTCTAAAATTTGAAAATATTTGGTTCTTAGGGTGTAATGTTTTGATTATTGATTATGCAGTTGAACATTTTGGGATTGTTTGTTAAGGGTATTTAGTTAATGGGTGAATGATATTTTTGTGAACTGGCTGCCTAAATTTCCAATATCCAGTTCTTAGGGTTTAAGGTTTTTGATTGTTGATTGTCTGATTGAGCATTTTAGTTCCTTTTTCCAAACTGCTTAACGGGTCGATGCTCTTTTTGTGAACAGCCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAGGTTTTCGATTATTCTTGTTTGATTCTTCAAGTTAATAGTGAAATATATGTAGTTTTATCACTGGAGGTTTGGCCATTAAATATTCTGGTGTTCCTCCTGATTTGTGTTTGAAGCTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACAGTAAGCTTGTATAATTTGTGCTTCCCTATTGCTTTGATTATTGTTGACTTTGAATTTAATTCCACAAATAATTTCGTTATTCCATTCTTCAGAGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAG</genome_strand>
        <mrna_strand>GC-CCACTCCAAAACCTTCTTCACTTTTGCTCTTCTCCATTAGCTCCGCCGCGGAGATCCTTTGTATTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCAGGGAAGACGAAGAAGAGAAGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGTTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGATAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCGCTTGAGCTAGGGGAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCACCGAAGATGGTACCCCGTACGATTGAAAATACAAGGGAGTCAGATGAGACTGTCTGTTTACCTGATGATGAAGAG.................................................................................................................CTATTTGCTGGCAACGATGTTGATGAATTTAGTGCAGTTCTGAAGAATGAGCGTAGTCCGAAAATATTGATTACAACATCCCGTTATAACTCTACA............................................................................................AGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATTAACGAGGAACATATGACCTGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214278" ref_strand="+" ref_description="SGN-E214278 [cLEC-77-P19]">
      <seq>aaaccttcttccattttgctcttctccattagctccgccgccgacatcctctgcactacactttctatggggagaaaacggaacttgagcgaagatggtggcggggaagacgaagaagagaggccgatgaaagagagaagggtgaaagagaagcaggagggaagagaaagtatgcggccttcaatgattaagaacaaggagaaaagagcagctgtacatgctaagttgaagcagcagaagaaggttgagaagaggaagaaggttaaagctcgtgaagctgctgagaaaaaagcacttgagctaggggaggagcctccagcgaagatggtaccccgtacgattgagaatacaagggaatcagatgagactgtctgtttacctgatgatgaagagctatttgctggcaacgatgttgatgagtttagtgcagttctgaagaacgagcgtagtccaaaaatattgattacaacatcccgttataactctacaagaggaccagcatttatttccgatcttatttctgtgattcctaatgctcattactataaacgaagaacatatgacctgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="9368" stop="6350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9068" g_stop="8757" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8756" i_stop="7114" i_length="1643">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7113" g_stop="7033" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="393" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7032" i_stop="6920" i_length="113">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.441" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6919" g_stop="6824" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="489" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6823" i_stop="6732" i_length="92">
            <donor d_prob="0.697" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6731" g_stop="6650" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="571" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E214278" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9068" e_stop="8757"/>
          <exon e_start="7113" e_stop="7033"/>
          <exon e_start="6919" e_stop="6824"/>
          <exon e_start="6731" e_stop="6650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTTCTTCCATTTTGCTCTTCTCCATTAGCTCCGCCGCCGACATCCTCTGCACTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAGGTAAAGCGTCTACTGAAATTTACAATTTTTACGGATTTGGGGTTTAGGGTTGATTTTGTGAATTGACATAATGGGGTTGTTTATTTGTGGGAATTGATTGATGGGTCGATGTGTTTTTTGTTCAAATTTAAAAAATATCTGGTTCTTAGGGTGTAGTGTTTTGATTCTTGATTGTGAGGTTGGGCATTGTGGGATTGTTTCTTAATGCTACTTAATTAATGGTTAGATGATGTTTTGGATTGTTTAACAAATAACAACAACATATGGTTGTATTTAATTACCAGTAGCAAATCATTGCAATTCAAGCTGCCAACACAGCATGCTTGGTTCTTAGATGGATCACACAGTGTACTAGAGCTCTAACATGTCTCTATTGCTCAGTACTTATAGCTAAGTAAAACTTTTCTAATGCTAGGTTGGGATCTAACAATAGTTATGTAGGCTAACTCTTTGGCCATACTTTCGACATGTCTACTCTTATTCACAAATACTCTATTGTTCCTTTTAATATACAGCCCATACACACATTTGGCCAAAATATTTTTTAAAGATTTGAGCTTGCTGCGAATTCCCTTTCCCATGTTGAATACTCCCTTGTAGAGAATGGGCCCAATCTGAAAATGGAAAGGCGTGCTGCTGGATCCACATAAGCAATTTGTTCCACAGGTATATGGAGAATGGGCGTTGCACAAATAAGTGCTCAATAGATTCTTCCTTACTCTGGCAAAATACACATATTTTAGGTACATCCAGACCCCATTTAGTTAGTCTATCTGTTGTTGCCAACTTCCTATGCAGCATGAGCCACATAATAAAGCACGCTTTAGGTCTGGCTCCATTTTGAACACAAGGCATTTCCATCCTATTCTGGGTTGGTCCACTACAGAAATAAGTATATTTTGTCTGATCAAGCTCCCCTTCCTGTTATCTCTTTGTTGCATTTGATCAACTATATTTGTCCGCCCGTAATCTTTCTGGTCATCCAGCTCGCTTGACTATGGGGAGTCCATGGAGTCTGGGAAGGTGATGCAGCCCTACTCCTATCTTACCTTCAGAACGTAAGTTTAAGTATGTGGAGCAAATACAGTAGCAAAGAAACCATGTTGAAAACAATTAAGAAGAGAACAAGTAGCGACAACAAATAACACGATAACTGATGCAAACGGGAACTAAACAAATGCTTTACTGCCTATCAATTAAAAACCAAACCGCAGAGCAAAAAGTTAAAAATCTTACCTGTTAAGCAACTCAGTCATTTGGCCCATAAAGTATTCATGATACTAAAGAGTCTCCCCATAACATTGCTCATGCATATCCCATGGAGAATGGTACAAACCCAGTTCCAGACTATCATGGGAATTAATTAATGGGTGGATGTTGTTTTTTGCCGTCACGTCTAAAATTTGAAAATATTTGGTTCTTAGGGTGTAATGTTTTGATTATTGATTATGCAGTTGAACATTTTGGGATTGTTTGTTAAGGGTATTTAGTTAATGGGTGAATGATATTTTTGTGAACTGGCTGCCTAAATTTCCAATATCCAGTTCTTAGGGTTTAAGGTTTTTGATTGTTGATTGTCTGATTGAGCATTTTAGTTCCTTTTTCCAAACTGCTTAACGGGTCGATGCTCTTTTTGTGAACAGCCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAGGTTTTCGATTATTCTTGTTTGATTCTTCAAGTTAATAGTGAAATATATGTAGTTTTATCACTGGAGGTTTGGCCATTAAATATTCTGGTGTTCCTCCTGATTTGTGTTTGAAGCTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACAGTAAGCTTGTATAATTTGTGCTTCCCTATTGCTTTGATTATTGTTGACTTTGAATTTAATTCCACAAATAATTTCGTTATTCCATTCTTCAGAGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAA</genome_strand>
        <mrna_strand>AAACCTTCTTCCATTTTGCTCTTCTCCATTAGCTCCGCCGCCGACATCCTCTGCACTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAG.................................................................................................................CTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACA............................................................................................AGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAAGAACATATGACCTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205341" ref_strand="+" ref_description="SGN-E205341 [cLEC-25-N13]">
      <seq>ttcactacaaaaccttctggcattttgctcttctccattagctccgccgccgacatcctctgcactacactttctatggggagaaaacggaacttgagcgaagatggtggcggggaagacgaagaagagaggccgatgaaagagagaagggtgaaagagaagcaggagggaagagaaagtatgcggccttcaatgactaagaacaaggagaaaagagcagctgtacatgctaagttgaagcagcagaagaaggttgagaagaggaagaaggttaaagctcgtgaagctgctgagaaaaaagcacttgagctaggggaggagcctccagcgaagatggtaccccgtacgattgagaatacaagggaatcagatgagactgtctgtttacctgatgatgaagagctatttgctggcaacgatgttgatgagtttagtgcagttctgaagaacgagcgtagtccaaaaatattgattacaacatcccgttataactctacaagaggaccagcatttatttccgatcttatttctgtgattcctaatgctcattactataaacgaggaacatatgacctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="9377" stop="6353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9077" g_stop="8757" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8756" i_stop="7114" i_length="1643">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7113" g_stop="7033" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="402" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7032" i_stop="6920" i_length="113">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.441" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6919" g_stop="6824" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="498" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6823" i_stop="6732" i_length="92">
            <donor d_prob="0.697" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6731" g_stop="6653" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="577" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E205341" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9077" e_stop="8757"/>
          <exon e_start="7113" e_stop="7033"/>
          <exon e_start="6919" e_stop="6824"/>
          <exon e_start="6731" e_stop="6653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTACAAAACCTTCTTCCATTTTGCTCTTCTCCATTAGCTCCGCCGCCGACATCCTCTGCACTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAGGTAAAGCGTCTACTGAAATTTACAATTTTTACGGATTTGGGGTTTAGGGTTGATTTTGTGAATTGACATAATGGGGTTGTTTATTTGTGGGAATTGATTGATGGGTCGATGTGTTTTTTGTTCAAATTTAAAAAATATCTGGTTCTTAGGGTGTAGTGTTTTGATTCTTGATTGTGAGGTTGGGCATTGTGGGATTGTTTCTTAATGCTACTTAATTAATGGTTAGATGATGTTTTGGATTGTTTAACAAATAACAACAACATATGGTTGTATTTAATTACCAGTAGCAAATCATTGCAATTCAAGCTGCCAACACAGCATGCTTGGTTCTTAGATGGATCACACAGTGTACTAGAGCTCTAACATGTCTCTATTGCTCAGTACTTATAGCTAAGTAAAACTTTTCTAATGCTAGGTTGGGATCTAACAATAGTTATGTAGGCTAACTCTTTGGCCATACTTTCGACATGTCTACTCTTATTCACAAATACTCTATTGTTCCTTTTAATATACAGCCCATACACACATTTGGCCAAAATATTTTTTAAAGATTTGAGCTTGCTGCGAATTCCCTTTCCCATGTTGAATACTCCCTTGTAGAGAATGGGCCCAATCTGAAAATGGAAAGGCGTGCTGCTGGATCCACATAAGCAATTTGTTCCACAGGTATATGGAGAATGGGCGTTGCACAAATAAGTGCTCAATAGATTCTTCCTTACTCTGGCAAAATACACATATTTTAGGTACATCCAGACCCCATTTAGTTAGTCTATCTGTTGTTGCCAACTTCCTATGCAGCATGAGCCACATAATAAAGCACGCTTTAGGTCTGGCTCCATTTTGAACACAAGGCATTTCCATCCTATTCTGGGTTGGTCCACTACAGAAATAAGTATATTTTGTCTGATCAAGCTCCCCTTCCTGTTATCTCTTTGTTGCATTTGATCAACTATATTTGTCCGCCCGTAATCTTTCTGGTCATCCAGCTCGCTTGACTATGGGGAGTCCATGGAGTCTGGGAAGGTGATGCAGCCCTACTCCTATCTTACCTTCAGAACGTAAGTTTAAGTATGTGGAGCAAATACAGTAGCAAAGAAACCATGTTGAAAACAATTAAGAAGAGAACAAGTAGCGACAACAAATAACACGATAACTGATGCAAACGGGAACTAAACAAATGCTTTACTGCCTATCAATTAAAAACCAAACCGCAGAGCAAAAAGTTAAAAATCTTACCTGTTAAGCAACTCAGTCATTTGGCCCATAAAGTATTCATGATACTAAAGAGTCTCCCCATAACATTGCTCATGCATATCCCATGGAGAATGGTACAAACCCAGTTCCAGACTATCATGGGAATTAATTAATGGGTGGATGTTGTTTTTTGCCGTCACGTCTAAAATTTGAAAATATTTGGTTCTTAGGGTGTAATGTTTTGATTATTGATTATGCAGTTGAACATTTTGGGATTGTTTGTTAAGGGTATTTAGTTAATGGGTGAATGATATTTTTGTGAACTGGCTGCCTAAATTTCCAATATCCAGTTCTTAGGGTTTAAGGTTTTTGATTGTTGATTGTCTGATTGAGCATTTTAGTTCCTTTTTCCAAACTGCTTAACGGGTCGATGCTCTTTTTGTGAACAGCCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAGGTTTTCGATTATTCTTGTTTGATTCTTCAAGTTAATAGTGAAATATATGTAGTTTTATCACTGGAGGTTTGGCCATTAAATATTCTGGTGTTCCTCCTGATTTGTGTTTGAAGCTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACAGTAAGCTTGTATAATTTGTGCTTCCCTATTGCTTTGATTATTGTTGACTTTGAATTTAATTCCACAAATAATTTCGTTATTCCATTCTTCAGAGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGA</genome_strand>
        <mrna_strand>TTCACTACAAAACCTTCTGGCATTTTGCTCTTCTCCATTAGCTCCGCCGCCGACATCCTCTGCACTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGACTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAG.................................................................................................................CTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACA............................................................................................AGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327030" ref_strand="+" ref_description="SGN-E327030 [cTOC-18-O18]">
      <seq>tgcactacactttctatggggagaaaacggaacttgagcgaagatggtggcggggaagacgaagaagagaggccgatgaaagagagaagggtgaaagagaagcaggagggaagagaaagtatgcggccttcaatgattaagaacaaggagaaaagagcagctgtacatgctaagttgaagcagcagaagaaggttgagaagaggaagaaggttaaagctcgtgaagctgctgagaaaaaagcacttgagctaggggaggagcctccagcgaagatggtaccccgtacgattgagaatacaagggaatcagatgagactgtctgtttacctgatgatgaagagctatttgctggcaacgatgttgatgagtttagtgcagttctgaagaacgagcgtagtccaaaaatattgattacaacatcccgttataactctacaagaggaccagcatttatttccgatcttatttctgtgattcctaatgctcattactataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="9317" stop="6372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9017" g_stop="8757" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8756" i_stop="7114" i_length="1643">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7113" g_stop="7033" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="342" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7032" i_stop="6920" i_length="113">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.441" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6919" g_stop="6824" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="438" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6823" i_stop="6732" i_length="92">
            <donor d_prob="0.697" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6731" g_stop="6672" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="498" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E327030" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9017" e_stop="8757"/>
          <exon e_start="7113" e_stop="7033"/>
          <exon e_start="6919" e_stop="6824"/>
          <exon e_start="6731" e_stop="6672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAGGTAAAGCGTCTACTGAAATTTACAATTTTTACGGATTTGGGGTTTAGGGTTGATTTTGTGAATTGACATAATGGGGTTGTTTATTTGTGGGAATTGATTGATGGGTCGATGTGTTTTTTGTTCAAATTTAAAAAATATCTGGTTCTTAGGGTGTAGTGTTTTGATTCTTGATTGTGAGGTTGGGCATTGTGGGATTGTTTCTTAATGCTACTTAATTAATGGTTAGATGATGTTTTGGATTGTTTAACAAATAACAACAACATATGGTTGTATTTAATTACCAGTAGCAAATCATTGCAATTCAAGCTGCCAACACAGCATGCTTGGTTCTTAGATGGATCACACAGTGTACTAGAGCTCTAACATGTCTCTATTGCTCAGTACTTATAGCTAAGTAAAACTTTTCTAATGCTAGGTTGGGATCTAACAATAGTTATGTAGGCTAACTCTTTGGCCATACTTTCGACATGTCTACTCTTATTCACAAATACTCTATTGTTCCTTTTAATATACAGCCCATACACACATTTGGCCAAAATATTTTTTAAAGATTTGAGCTTGCTGCGAATTCCCTTTCCCATGTTGAATACTCCCTTGTAGAGAATGGGCCCAATCTGAAAATGGAAAGGCGTGCTGCTGGATCCACATAAGCAATTTGTTCCACAGGTATATGGAGAATGGGCGTTGCACAAATAAGTGCTCAATAGATTCTTCCTTACTCTGGCAAAATACACATATTTTAGGTACATCCAGACCCCATTTAGTTAGTCTATCTGTTGTTGCCAACTTCCTATGCAGCATGAGCCACATAATAAAGCACGCTTTAGGTCTGGCTCCATTTTGAACACAAGGCATTTCCATCCTATTCTGGGTTGGTCCACTACAGAAATAAGTATATTTTGTCTGATCAAGCTCCCCTTCCTGTTATCTCTTTGTTGCATTTGATCAACTATATTTGTCCGCCCGTAATCTTTCTGGTCATCCAGCTCGCTTGACTATGGGGAGTCCATGGAGTCTGGGAAGGTGATGCAGCCCTACTCCTATCTTACCTTCAGAACGTAAGTTTAAGTATGTGGAGCAAATACAGTAGCAAAGAAACCATGTTGAAAACAATTAAGAAGAGAACAAGTAGCGACAACAAATAACACGATAACTGATGCAAACGGGAACTAAACAAATGCTTTACTGCCTATCAATTAAAAACCAAACCGCAGAGCAAAAAGTTAAAAATCTTACCTGTTAAGCAACTCAGTCATTTGGCCCATAAAGTATTCATGATACTAAAGAGTCTCCCCATAACATTGCTCATGCATATCCCATGGAGAATGGTACAAACCCAGTTCCAGACTATCATGGGAATTAATTAATGGGTGGATGTTGTTTTTTGCCGTCACGTCTAAAATTTGAAAATATTTGGTTCTTAGGGTGTAATGTTTTGATTATTGATTATGCAGTTGAACATTTTGGGATTGTTTGTTAAGGGTATTTAGTTAATGGGTGAATGATATTTTTGTGAACTGGCTGCCTAAATTTCCAATATCCAGTTCTTAGGGTTTAAGGTTTTTGATTGTTGATTGTCTGATTGAGCATTTTAGTTCCTTTTTCCAAACTGCTTAACGGGTCGATGCTCTTTTTGTGAACAGCCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAGGTTTTCGATTATTCTTGTTTGATTCTTCAAGTTAATAGTGAAATATATGTAGTTTTATCACTGGAGGTTTGGCCATTAAATATTCTGGTGTTCCTCCTGATTTGTGTTTGAAGCTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACAGTAAGCTTGTATAATTTGTGCTTCCCTATTGCTTTGATTATTGTTGACTTTGAATTTAATTCCACAAATAATTTCGTTATTCCATTCTTCAGAGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAA</genome_strand>
        <mrna_strand>TGCACTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAG.................................................................................................................CTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACA............................................................................................AGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474570" ref_strand="+" ref_description="SGN-E474570 [cSTB-37-A15]">
      <seq>ttcacttttgctcttctccattagctccgccgcggagatcctttgtattaccacctttctatggggagaaaaccggaaccttgagccgaagatggtggcagggaagacgaagaagagaagccgatgaaagagagaagggtgaaagagaagcaggagggaagagaaagtatgcggccttcaatgattaagaacaaggagaaaagagcagttgtacatgctaagttgaagcagcagaagaaggttgataagaggaagaaggttaaagctcgtgaagctgctgagaaaaaagcgcttgagctaggggaggagcctccaccgaagatggtaccccgtacgattgaaaatacaagggagtcagatgagactgtctgtttacctgatgatgaagagctatttgctggcaacgatgttgatgaatttagtgcagttctgaagaatgagcgtagtccgaaaatattgattacaacatcccgttataactctacaagaggaccagcatttatttccgatcttatttctgtgattcctaatgctcattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="9360" stop="6378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9060" g_stop="8757" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8756" i_stop="7114" i_length="1643">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7113" g_stop="7033" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="390" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7032" i_stop="6920" i_length="113">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.441" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6919" g_stop="6824" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="486" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6823" i_stop="6732" i_length="92">
            <donor d_prob="0.697" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6731" g_stop="6678" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="540" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E474570" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9060" e_stop="8757"/>
          <exon e_start="7113" e_stop="7033"/>
          <exon e_start="6919" e_stop="6824"/>
          <exon e_start="6731" e_stop="6678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATTTTGCTCTTCTCCATTAGCTCCGCCGCCGACATCCTCTGCACTA-CA-CTTTCTATGGGGAGAAAAC-GGAA-CTTGAG-CGAAGATGGTGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAGGTAAAGCGTCTACTGAAATTTACAATTTTTACGGATTTGGGGTTTAGGGTTGATTTTGTGAATTGACATAATGGGGTTGTTTATTTGTGGGAATTGATTGATGGGTCGATGTGTTTTTTGTTCAAATTTAAAAAATATCTGGTTCTTAGGGTGTAGTGTTTTGATTCTTGATTGTGAGGTTGGGCATTGTGGGATTGTTTCTTAATGCTACTTAATTAATGGTTAGATGATGTTTTGGATTGTTTAACAAATAACAACAACATATGGTTGTATTTAATTACCAGTAGCAAATCATTGCAATTCAAGCTGCCAACACAGCATGCTTGGTTCTTAGATGGATCACACAGTGTACTAGAGCTCTAACATGTCTCTATTGCTCAGTACTTATAGCTAAGTAAAACTTTTCTAATGCTAGGTTGGGATCTAACAATAGTTATGTAGGCTAACTCTTTGGCCATACTTTCGACATGTCTACTCTTATTCACAAATACTCTATTGTTCCTTTTAATATACAGCCCATACACACATTTGGCCAAAATATTTTTTAAAGATTTGAGCTTGCTGCGAATTCCCTTTCCCATGTTGAATACTCCCTTGTAGAGAATGGGCCCAATCTGAAAATGGAAAGGCGTGCTGCTGGATCCACATAAGCAATTTGTTCCACAGGTATATGGAGAATGGGCGTTGCACAAATAAGTGCTCAATAGATTCTTCCTTACTCTGGCAAAATACACATATTTTAGGTACATCCAGACCCCATTTAGTTAGTCTATCTGTTGTTGCCAACTTCCTATGCAGCATGAGCCACATAATAAAGCACGCTTTAGGTCTGGCTCCATTTTGAACACAAGGCATTTCCATCCTATTCTGGGTTGGTCCACTACAGAAATAAGTATATTTTGTCTGATCAAGCTCCCCTTCCTGTTATCTCTTTGTTGCATTTGATCAACTATATTTGTCCGCCCGTAATCTTTCTGGTCATCCAGCTCGCTTGACTATGGGGAGTCCATGGAGTCTGGGAAGGTGATGCAGCCCTACTCCTATCTTACCTTCAGAACGTAAGTTTAAGTATGTGGAGCAAATACAGTAGCAAAGAAACCATGTTGAAAACAATTAAGAAGAGAACAAGTAGCGACAACAAATAACACGATAACTGATGCAAACGGGAACTAAACAAATGCTTTACTGCCTATCAATTAAAAACCAAACCGCAGAGCAAAAAGTTAAAAATCTTACCTGTTAAGCAACTCAGTCATTTGGCCCATAAAGTATTCATGATACTAAAGAGTCTCCCCATAACATTGCTCATGCATATCCCATGGAGAATGGTACAAACCCAGTTCCAGACTATCATGGGAATTAATTAATGGGTGGATGTTGTTTTTTGCCGTCACGTCTAAAATTTGAAAATATTTGGTTCTTAGGGTGTAATGTTTTGATTATTGATTATGCAGTTGAACATTTTGGGATTGTTTGTTAAGGGTATTTAGTTAATGGGTGAATGATATTTTTGTGAACTGGCTGCCTAAATTTCCAATATCCAGTTCTTAGGGTTTAAGGTTTTTGATTGTTGATTGTCTGATTGAGCATTTTAGTTCCTTTTTCCAAACTGCTTAACGGGTCGATGCTCTTTTTGTGAACAGCCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAGGTTTTCGATTATTCTTGTTTGATTCTTCAAGTTAATAGTGAAATATATGTAGTTTTATCACTGGAGGTTTGGCCATTAAATATTCTGGTGTTCCTCCTGATTTGTGTTTGAAGCTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACAGTAAGCTTGTATAATTTGTGCTTCCCTATTGCTTTGATTATTGTTGACTTTGAATTTAATTCCACAAATAATTTCGTTATTCCATTCTTCAGAGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTAC</genome_strand>
        <mrna_strand>TTCACTTTTGCTCTTCTCCATTAGCTCCGCCGCGGAGATCCTTTGTATTACCACCTTTCTATGGGGAGAAAACCGGAACCTTGAGCCGAAGATGGTGGCAGGGAAGACGAAGAAGAGAAGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGTTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGATAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCGCTTGAGCTAGGGGAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCACCGAAGATGGTACCCCGTACGATTGAAAATACAAGGGAGTCAGATGAGACTGTCTGTTTACCTGATGATGAAGAG.................................................................................................................CTATTTGCTGGCAACGATGTTGATGAATTTAGTGCAGTTCTGAAGAATGAGCGTAGTCCGAAAATATTGATTACAACATCCCGTTATAACTCTACA............................................................................................AGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E562253" ref_strand="+" ref_description="SGN-E562253 [693]">
      <seq>gcgaagatggtggcagggaagacgaagaagagaagccgatgaaagagagaagggtgaaagagaagcaggagggaagagaaagtatgcggccttcaatgattaagaacaaggagaaaagagcagttgtacatgctaagttgaagcagcagaagaaggttgataagaggaagaaggttaaagctcgtgaagctgctgagaaaaaagcgcttgagctaggggaggagcctccaccgaagatggtaccccgtacgattgaaaatacaagggagtcagatgagactgtctgtttacctgatgatgaagagctatttgctggcaacgatgttgatgaatttagtgcagttctgaagaacgagcgtagtccgaaaatattgattacaacatcccgttataactctacaagaggaccagcatttatttccgatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="9280" stop="6405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8980" g_stop="8757" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8756" i_stop="7114" i_length="1643">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7113" g_stop="7033" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="305" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7032" i_stop="6920" i_length="113">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.441" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6919" g_stop="6824" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="401" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6823" i_stop="6732" i_length="92">
            <donor d_prob="0.697" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6731" g_stop="6705" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="428" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E562253" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E562253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8980" e_stop="8757"/>
          <exon e_start="7113" e_stop="7033"/>
          <exon e_start="6919" e_stop="6824"/>
          <exon e_start="6731" e_stop="6705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAAGATGGTGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAGGTAAAGCGTCTACTGAAATTTACAATTTTTACGGATTTGGGGTTTAGGGTTGATTTTGTGAATTGACATAATGGGGTTGTTTATTTGTGGGAATTGATTGATGGGTCGATGTGTTTTTTGTTCAAATTTAAAAAATATCTGGTTCTTAGGGTGTAGTGTTTTGATTCTTGATTGTGAGGTTGGGCATTGTGGGATTGTTTCTTAATGCTACTTAATTAATGGTTAGATGATGTTTTGGATTGTTTAACAAATAACAACAACATATGGTTGTATTTAATTACCAGTAGCAAATCATTGCAATTCAAGCTGCCAACACAGCATGCTTGGTTCTTAGATGGATCACACAGTGTACTAGAGCTCTAACATGTCTCTATTGCTCAGTACTTATAGCTAAGTAAAACTTTTCTAATGCTAGGTTGGGATCTAACAATAGTTATGTAGGCTAACTCTTTGGCCATACTTTCGACATGTCTACTCTTATTCACAAATACTCTATTGTTCCTTTTAATATACAGCCCATACACACATTTGGCCAAAATATTTTTTAAAGATTTGAGCTTGCTGCGAATTCCCTTTCCCATGTTGAATACTCCCTTGTAGAGAATGGGCCCAATCTGAAAATGGAAAGGCGTGCTGCTGGATCCACATAAGCAATTTGTTCCACAGGTATATGGAGAATGGGCGTTGCACAAATAAGTGCTCAATAGATTCTTCCTTACTCTGGCAAAATACACATATTTTAGGTACATCCAGACCCCATTTAGTTAGTCTATCTGTTGTTGCCAACTTCCTATGCAGCATGAGCCACATAATAAAGCACGCTTTAGGTCTGGCTCCATTTTGAACACAAGGCATTTCCATCCTATTCTGGGTTGGTCCACTACAGAAATAAGTATATTTTGTCTGATCAAGCTCCCCTTCCTGTTATCTCTTTGTTGCATTTGATCAACTATATTTGTCCGCCCGTAATCTTTCTGGTCATCCAGCTCGCTTGACTATGGGGAGTCCATGGAGTCTGGGAAGGTGATGCAGCCCTACTCCTATCTTACCTTCAGAACGTAAGTTTAAGTATGTGGAGCAAATACAGTAGCAAAGAAACCATGTTGAAAACAATTAAGAAGAGAACAAGTAGCGACAACAAATAACACGATAACTGATGCAAACGGGAACTAAACAAATGCTTTACTGCCTATCAATTAAAAACCAAACCGCAGAGCAAAAAGTTAAAAATCTTACCTGTTAAGCAACTCAGTCATTTGGCCCATAAAGTATTCATGATACTAAAGAGTCTCCCCATAACATTGCTCATGCATATCCCATGGAGAATGGTACAAACCCAGTTCCAGACTATCATGGGAATTAATTAATGGGTGGATGTTGTTTTTTGCCGTCACGTCTAAAATTTGAAAATATTTGGTTCTTAGGGTGTAATGTTTTGATTATTGATTATGCAGTTGAACATTTTGGGATTGTTTGTTAAGGGTATTTAGTTAATGGGTGAATGATATTTTTGTGAACTGGCTGCCTAAATTTCCAATATCCAGTTCTTAGGGTTTAAGGTTTTTGATTGTTGATTGTCTGATTGAGCATTTTAGTTCCTTTTTCCAAACTGCTTAACGGGTCGATGCTCTTTTTGTGAACAGCCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAGGTTTTCGATTATTCTTGTTTGATTCTTCAAGTTAATAGTGAAATATATGTAGTTTTATCACTGGAGGTTTGGCCATTAAATATTCTGGTGTTCCTCCTGATTTGTGTTTGAAGCTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACAGTAAGCTTGTATAATTTGTGCTTCCCTATTGCTTTGATTATTGTTGACTTTGAATTTAATTCCACAAATAATTTCGTTATTCCATTCTTCAGAGAGGACCAGCATTTATTTCCGATCTT</genome_strand>
        <mrna_strand>GCGAAGATGGTGGCAGGGAAGACGAAGAAGAGAAGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGTTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGATAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCGCTTGAGCTAGGGGAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCACCGAAGATGGTACCCCGTACGATTGAAAATACAAGGGAGTCAGATGAGACTGTCTGTTTACCTGATGATGAAGAG.................................................................................................................CTATTTGCTGGCAACGATGTTGATGAATTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCGAAAATATTGATTACAACATCCCGTTATAACTCTACA............................................................................................AGAGGACCAGCATTTATTTCCGATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212050" ref_strand="+" ref_description="SGN-E212050 [cLEC-66-P10]">
      <seq>aaaccttcttccattttgctcttctccattagctccgccgccgacatcctctgcactacgctttctatggggagaaaacggaacttgagcgaagatggaggcggggaagacgaagaagagaggccgatgaaagagagaagggtgaaagagaagcaggagggaagagaaagtatgcggccttcgatgattaagaacaaggagaaaagagcagctgcacgtgctaagttgaagcagcacaagaaggttgagaagaggaacaaggttagagctcgtgaagctgctgagaaaaaagcacttgagctatgggaggagcctccagcgaagatggtaccccgtacgattgagaatacaagggaatcacatgagactgtctgtttacctgatgatgaagagctatttgctggcaacgatgttgatgagtgtagtgcagttctgaagaacgagcgtagtccagaaatattgattacgacatcccgttataactcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="9368" stop="6526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9068" g_stop="8757" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8756" i_stop="7114" i_length="1643">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7113" g_stop="7033" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="393" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7032" i_stop="6920" i_length="113">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.441" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6919" g_stop="6826" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="487" r_length="94" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E212050" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9068" e_stop="8757"/>
          <exon e_start="7113" e_stop="7033"/>
          <exon e_start="6919" e_stop="6826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTTCTTCCATTTTGCTCTTCTCCATTAGCTCCGCCGCCGACATCCTCTGCACTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAGGTAAAGCGTCTACTGAAATTTACAATTTTTACGGATTTGGGGTTTAGGGTTGATTTTGTGAATTGACATAATGGGGTTGTTTATTTGTGGGAATTGATTGATGGGTCGATGTGTTTTTTGTTCAAATTTAAAAAATATCTGGTTCTTAGGGTGTAGTGTTTTGATTCTTGATTGTGAGGTTGGGCATTGTGGGATTGTTTCTTAATGCTACTTAATTAATGGTTAGATGATGTTTTGGATTGTTTAACAAATAACAACAACATATGGTTGTATTTAATTACCAGTAGCAAATCATTGCAATTCAAGCTGCCAACACAGCATGCTTGGTTCTTAGATGGATCACACAGTGTACTAGAGCTCTAACATGTCTCTATTGCTCAGTACTTATAGCTAAGTAAAACTTTTCTAATGCTAGGTTGGGATCTAACAATAGTTATGTAGGCTAACTCTTTGGCCATACTTTCGACATGTCTACTCTTATTCACAAATACTCTATTGTTCCTTTTAATATACAGCCCATACACACATTTGGCCAAAATATTTTTTAAAGATTTGAGCTTGCTGCGAATTCCCTTTCCCATGTTGAATACTCCCTTGTAGAGAATGGGCCCAATCTGAAAATGGAAAGGCGTGCTGCTGGATCCACATAAGCAATTTGTTCCACAGGTATATGGAGAATGGGCGTTGCACAAATAAGTGCTCAATAGATTCTTCCTTACTCTGGCAAAATACACATATTTTAGGTACATCCAGACCCCATTTAGTTAGTCTATCTGTTGTTGCCAACTTCCTATGCAGCATGAGCCACATAATAAAGCACGCTTTAGGTCTGGCTCCATTTTGAACACAAGGCATTTCCATCCTATTCTGGGTTGGTCCACTACAGAAATAAGTATATTTTGTCTGATCAAGCTCCCCTTCCTGTTATCTCTTTGTTGCATTTGATCAACTATATTTGTCCGCCCGTAATCTTTCTGGTCATCCAGCTCGCTTGACTATGGGGAGTCCATGGAGTCTGGGAAGGTGATGCAGCCCTACTCCTATCTTACCTTCAGAACGTAAGTTTAAGTATGTGGAGCAAATACAGTAGCAAAGAAACCATGTTGAAAACAATTAAGAAGAGAACAAGTAGCGACAACAAATAACACGATAACTGATGCAAACGGGAACTAAACAAATGCTTTACTGCCTATCAATTAAAAACCAAACCGCAGAGCAAAAAGTTAAAAATCTTACCTGTTAAGCAACTCAGTCATTTGGCCCATAAAGTATTCATGATACTAAAGAGTCTCCCCATAACATTGCTCATGCATATCCCATGGAGAATGGTACAAACCCAGTTCCAGACTATCATGGGAATTAATTAATGGGTGGATGTTGTTTTTTGCCGTCACGTCTAAAATTTGAAAATATTTGGTTCTTAGGGTGTAATGTTTTGATTATTGATTATGCAGTTGAACATTTTGGGATTGTTTGTTAAGGGTATTTAGTTAATGGGTGAATGATATTTTTGTGAACTGGCTGCCTAAATTTCCAATATCCAGTTCTTAGGGTTTAAGGTTTTTGATTGTTGATTGTCTGATTGAGCATTTTAGTTCCTTTTTCCAAACTGCTTAACGGGTCGATGCTCTTTTTGTGAACAGCCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAGGTTTTCGATTATTCTTGTTTGATTCTTCAAGTTAATAGTGAAATATATGTAGTTTTATCACTGGAGGTTTGGCCATTAAATATTCTGGTGTTCCTCCTGATTTGTGTTTGAAGCTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTA</genome_strand>
        <mrna_strand>AAACCTTCTTCCATTTTGCTCTTCTCCATTAGCTCCGCCGCCGACATCCTCTGCACTACGCTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGAGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCGATGATTAAGAACAAGGAGAAAAGAGCAGCTGCACGTGCTAAGTTGAAGCAGCACAAGAAGGTTGAGAAGAGGAACAAGGTTAGAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTATGGGAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCACATGAGACTGTCTGTTTACCTGATGATGAAGAG.................................................................................................................CTATTTGCTGGCAACGATGTTGATGAGTGTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAGAAATATTGATTACGACATCCCGTTATAACTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E399820" ref_strand="+" ref_description="SGN-E399820 [cSTC-2-J15]">
      <seq>gcccactccaaaaccttcttcacttttgctcttctccattagctccgccgcggagatcctttgtattacactttctatggggagaaaacggaacttgagcgaagatggtggcagggaagaaaagaagagaaccgatgaaagagagaagggtgaaagagaagcaggagggaagagaaagtatgcggccttcaatgattaagaacaaggagaaaagagcagttgtacatgctaagttgaagcagcagaagaaggttgataagaggaagaaggttaaagctcgtgaagctgctgagaaaaaagcgcttgagctaggggaggagcctccaccgaagatggtaccccgtacgattgaaaatacaagggagtcagatgagactgtctgtttacctgatgatgaagaggttntctcttattcttgtttgattcttcaagttaacaatgaaatatatgtagttttatcattggaggtctggccattaaatattctggtgttcttcctgattagactttgaagctatttgctggcaacgatgttgatgaatttagtgcagttctgaagaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="9375" stop="6570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9079" g_stop="8757" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8756" i_stop="7114" i_length="1643">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7113" g_stop="6870" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="564" r_length="244" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E399820" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E399820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9079" e_stop="8757"/>
          <exon e_start="7113" e_stop="6870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCACTACAAAACCTTCTTCCATTTTGCTCTTCTCCATTAGCTCCGCCGCCGACATCCTCTGCACTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAGGTAAAGCGTCTACTGAAATTTACAATTTTTACGGATTTGGGGTTTAGGGTTGATTTTGTGAATTGACATAATGGGGTTGTTTATTTGTGGGAATTGATTGATGGGTCGATGTGTTTTTTGTTCAAATTTAAAAAATATCTGGTTCTTAGGGTGTAGTGTTTTGATTCTTGATTGTGAGGTTGGGCATTGTGGGATTGTTTCTTAATGCTACTTAATTAATGGTTAGATGATGTTTTGGATTGTTTAACAAATAACAACAACATATGGTTGTATTTAATTACCAGTAGCAAATCATTGCAATTCAAGCTGCCAACACAGCATGCTTGGTTCTTAGATGGATCACACAGTGTACTAGAGCTCTAACATGTCTCTATTGCTCAGTACTTATAGCTAAGTAAAACTTTTCTAATGCTAGGTTGGGATCTAACAATAGTTATGTAGGCTAACTCTTTGGCCATACTTTCGACATGTCTACTCTTATTCACAAATACTCTATTGTTCCTTTTAATATACAGCCCATACACACATTTGGCCAAAATATTTTTTAAAGATTTGAGCTTGCTGCGAATTCCCTTTCCCATGTTGAATACTCCCTTGTAGAGAATGGGCCCAATCTGAAAATGGAAAGGCGTGCTGCTGGATCCACATAAGCAATTTGTTCCACAGGTATATGGAGAATGGGCGTTGCACAAATAAGTGCTCAATAGATTCTTCCTTACTCTGGCAAAATACACATATTTTAGGTACATCCAGACCCCATTTAGTTAGTCTATCTGTTGTTGCCAACTTCCTATGCAGCATGAGCCACATAATAAAGCACGCTTTAGGTCTGGCTCCATTTTGAACACAAGGCATTTCCATCCTATTCTGGGTTGGTCCACTACAGAAATAAGTATATTTTGTCTGATCAAGCTCCCCTTCCTGTTATCTCTTTGTTGCATTTGATCAACTATATTTGTCCGCCCGTAATCTTTCTGGTCATCCAGCTCGCTTGACTATGGGGAGTCCATGGAGTCTGGGAAGGTGATGCAGCCCTACTCCTATCTTACCTTCAGAACGTAAGTTTAAGTATGTGGAGCAAATACAGTAGCAAAGAAACCATGTTGAAAACAATTAAGAAGAGAACAAGTAGCGACAACAAATAACACGATAACTGATGCAAACGGGAACTAAACAAATGCTTTACTGCCTATCAATTAAAAACCAAACCGCAGAGCAAAAAGTTAAAAATCTTACCTGTTAAGCAACTCAGTCATTTGGCCCATAAAGTATTCATGATACTAAAGAGTCTCCCCATAACATTGCTCATGCATATCCCATGGAGAATGGTACAAACCCAGTTCCAGACTATCATGGGAATTAATTAATGGGTGGATGTTGTTTTTTGCCGTCACGTCTAAAATTTGAAAATATTTGGTTCTTAGGGTGTAATGTTTTGATTATTGATTATGCAGTTGAACATTTTGGGATTGTTTGTTAAGGGTATTTAGTTAATGGGTGAATGATATTTTTGTGAACTGGCTGCCTAAATTTCCAATATCCAGTTCTTAGGGTTTAAGGTTTTTGATTGTTGATTGTCTGATTGAGCATTTTAGTTCCTTTTTCCAAACTGCTTAACGGGTCGATGCTCTTTTTGTGAACAGCCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAGGTTTTCGATTATTCTTGTTTGATTCTTCAAGTTAATAGTGAAATATATGTAGTTTTATCACTGGAGGTTTGGCCATTAAATATTCTGGTGTTCCTCCTGATTTGTGTTTGAAGCTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGA</genome_strand>
        <mrna_strand>GC-CCACTCCAAAACCTTCTTCACTTTTGCTCTTCTCCATTAGCTCCGCCGCGGAGATCCTTTGTATTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCAGGGAAGA-AAAGAAGAGA-ACCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGTTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGATAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCGCTTGAGCTAGGGGAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCACCGAAGATGGTACCCCGTACGATTGAAAATACAAGGGAGTCAGATGAGACTGTCTGTTTACCTGATGATGAAGAGGTTNTCTCTTATTCTTGTTTGATTCTTCAAGTTAACAATGAAATATATGTAGTTTTATCATTGGAGGTCTGGCCATTAAATATTCTGGTGTTCTTCCTGATTAGACTTTGAAGCTATTTGCTGGCAACGATGTTGATGAATTTAGTGCAGTTCTGAAGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272970" ref_strand="+" ref_description="SGN-E272970 [cLEM-25-M9]">
      <seq>gccgtttagcttcactacaaaaccttcttccattttgctcttctccattagctccgccgccgacatcctctgcactacactttctatggggagaaaacggaacttgagcgaagatggtggcggggaagacgaagaagagaggccgatgaaagagagaagggtgaaagagaagcacgagggaagagaaagtatgcggccttcaatgattaagaacaaggagaaaagagcagctgtacatgctaagttgaagcagcagaagaaggttgagaagaggaagaaggttaaagctcgtgaagctgctgagaaaaaagcacttgagctaggggaggagcctccagcgaagatggtaccccgtacgattgagaatacaagggaatcagatgagactgtctgtttacctgatgatgaagagctatttgctggcaacgatgttgatgagtttagtgcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="9387" stop="6582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9087" g_stop="8757" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8756" i_stop="7114" i_length="1643">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7113" g_stop="7033" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="412" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7032" i_stop="6920" i_length="113">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.441" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6919" g_stop="6882" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="450" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E272970" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9087" e_stop="8757"/>
          <exon e_start="7113" e_stop="7033"/>
          <exon e_start="6919" e_stop="6882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTTTAGCTTCACTACAAAACCTTCTTCCATTTTGCTCTTCTCCATTAGCTCCGCCGCCGACATCCTCTGCACTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAGGTAAAGCGTCTACTGAAATTTACAATTTTTACGGATTTGGGGTTTAGGGTTGATTTTGTGAATTGACATAATGGGGTTGTTTATTTGTGGGAATTGATTGATGGGTCGATGTGTTTTTTGTTCAAATTTAAAAAATATCTGGTTCTTAGGGTGTAGTGTTTTGATTCTTGATTGTGAGGTTGGGCATTGTGGGATTGTTTCTTAATGCTACTTAATTAATGGTTAGATGATGTTTTGGATTGTTTAACAAATAACAACAACATATGGTTGTATTTAATTACCAGTAGCAAATCATTGCAATTCAAGCTGCCAACACAGCATGCTTGGTTCTTAGATGGATCACACAGTGTACTAGAGCTCTAACATGTCTCTATTGCTCAGTACTTATAGCTAAGTAAAACTTTTCTAATGCTAGGTTGGGATCTAACAATAGTTATGTAGGCTAACTCTTTGGCCATACTTTCGACATGTCTACTCTTATTCACAAATACTCTATTGTTCCTTTTAATATACAGCCCATACACACATTTGGCCAAAATATTTTTTAAAGATTTGAGCTTGCTGCGAATTCCCTTTCCCATGTTGAATACTCCCTTGTAGAGAATGGGCCCAATCTGAAAATGGAAAGGCGTGCTGCTGGATCCACATAAGCAATTTGTTCCACAGGTATATGGAGAATGGGCGTTGCACAAATAAGTGCTCAATAGATTCTTCCTTACTCTGGCAAAATACACATATTTTAGGTACATCCAGACCCCATTTAGTTAGTCTATCTGTTGTTGCCAACTTCCTATGCAGCATGAGCCACATAATAAAGCACGCTTTAGGTCTGGCTCCATTTTGAACACAAGGCATTTCCATCCTATTCTGGGTTGGTCCACTACAGAAATAAGTATATTTTGTCTGATCAAGCTCCCCTTCCTGTTATCTCTTTGTTGCATTTGATCAACTATATTTGTCCGCCCGTAATCTTTCTGGTCATCCAGCTCGCTTGACTATGGGGAGTCCATGGAGTCTGGGAAGGTGATGCAGCCCTACTCCTATCTTACCTTCAGAACGTAAGTTTAAGTATGTGGAGCAAATACAGTAGCAAAGAAACCATGTTGAAAACAATTAAGAAGAGAACAAGTAGCGACAACAAATAACACGATAACTGATGCAAACGGGAACTAAACAAATGCTTTACTGCCTATCAATTAAAAACCAAACCGCAGAGCAAAAAGTTAAAAATCTTACCTGTTAAGCAACTCAGTCATTTGGCCCATAAAGTATTCATGATACTAAAGAGTCTCCCCATAACATTGCTCATGCATATCCCATGGAGAATGGTACAAACCCAGTTCCAGACTATCATGGGAATTAATTAATGGGTGGATGTTGTTTTTTGCCGTCACGTCTAAAATTTGAAAATATTTGGTTCTTAGGGTGTAATGTTTTGATTATTGATTATGCAGTTGAACATTTTGGGATTGTTTGTTAAGGGTATTTAGTTAATGGGTGAATGATATTTTTGTGAACTGGCTGCCTAAATTTCCAATATCCAGTTCTTAGGGTTTAAGGTTTTTGATTGTTGATTGTCTGATTGAGCATTTTAGTTCCTTTTTCCAAACTGCTTAACGGGTCGATGCTCTTTTTGTGAACAGCCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAGGTTTTCGATTATTCTTGTTTGATTCTTCAAGTTAATAGTGAAATATATGTAGTTTTATCACTGGAGGTTTGGCCATTAAATATTCTGGTGTTCCTCCTGATTTGTGTTTGAAGCTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGT</genome_strand>
        <mrna_strand>GCCGTTTAGCTTCACTACAAAACCTTCTTCCATTTTGCTCTTCTCCATTAGCTCCGCCGCCGACATCCTCTGCACTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCACGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAG.................................................................................................................CTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205390" ref_strand="+" ref_description="SGN-E205390 [cLEC-28-E3]">
      <seq>ctacaaaacctacttccattttgctcttctccattagctccgacgccgacatcctctgcactacactttctatggggagaaaacggaacttgagcgaagatggtggcggggaagacgaagaatagaggccgatgaaagagagaagggtgaaagagacgcaggagggaagagaaagtctgcggccttcaatgattaataacaaggagaaaagagcatctgtacatgctaagttgaagcatcacaagaaggttgagaagaggaagaaggttaaagctcgtgaagctgctgagaaaaaagcactagagctaggggaggagcctccagcgaagatggtaccccgtacgattgacaatacaagggaatcagatgagactgtctgtttacctgatgatgaagagctatttgctggcaacgatgttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="9373" stop="6594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9073" g_stop="8757" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8756" i_stop="7114" i_length="1643">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7113" g_stop="7033" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="398" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7032" i_stop="6920" i_length="113">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.441" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6919" g_stop="6894" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="424" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E205390" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9073" e_stop="8757"/>
          <exon e_start="7113" e_stop="7033"/>
          <exon e_start="6919" e_stop="6894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAAAACCTTCTTCCATTTTGCTCTTCTCCATTAGCTCCGCCGCCGACATCCTCTGCACTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAGGTAAAGCGTCTACTGAAATTTACAATTTTTACGGATTTGGGGTTTAGGGTTGATTTTGTGAATTGACATAATGGGGTTGTTTATTTGTGGGAATTGATTGATGGGTCGATGTGTTTTTTGTTCAAATTTAAAAAATATCTGGTTCTTAGGGTGTAGTGTTTTGATTCTTGATTGTGAGGTTGGGCATTGTGGGATTGTTTCTTAATGCTACTTAATTAATGGTTAGATGATGTTTTGGATTGTTTAACAAATAACAACAACATATGGTTGTATTTAATTACCAGTAGCAAATCATTGCAATTCAAGCTGCCAACACAGCATGCTTGGTTCTTAGATGGATCACACAGTGTACTAGAGCTCTAACATGTCTCTATTGCTCAGTACTTATAGCTAAGTAAAACTTTTCTAATGCTAGGTTGGGATCTAACAATAGTTATGTAGGCTAACTCTTTGGCCATACTTTCGACATGTCTACTCTTATTCACAAATACTCTATTGTTCCTTTTAATATACAGCCCATACACACATTTGGCCAAAATATTTTTTAAAGATTTGAGCTTGCTGCGAATTCCCTTTCCCATGTTGAATACTCCCTTGTAGAGAATGGGCCCAATCTGAAAATGGAAAGGCGTGCTGCTGGATCCACATAAGCAATTTGTTCCACAGGTATATGGAGAATGGGCGTTGCACAAATAAGTGCTCAATAGATTCTTCCTTACTCTGGCAAAATACACATATTTTAGGTACATCCAGACCCCATTTAGTTAGTCTATCTGTTGTTGCCAACTTCCTATGCAGCATGAGCCACATAATAAAGCACGCTTTAGGTCTGGCTCCATTTTGAACACAAGGCATTTCCATCCTATTCTGGGTTGGTCCACTACAGAAATAAGTATATTTTGTCTGATCAAGCTCCCCTTCCTGTTATCTCTTTGTTGCATTTGATCAACTATATTTGTCCGCCCGTAATCTTTCTGGTCATCCAGCTCGCTTGACTATGGGGAGTCCATGGAGTCTGGGAAGGTGATGCAGCCCTACTCCTATCTTACCTTCAGAACGTAAGTTTAAGTATGTGGAGCAAATACAGTAGCAAAGAAACCATGTTGAAAACAATTAAGAAGAGAACAAGTAGCGACAACAAATAACACGATAACTGATGCAAACGGGAACTAAACAAATGCTTTACTGCCTATCAATTAAAAACCAAACCGCAGAGCAAAAAGTTAAAAATCTTACCTGTTAAGCAACTCAGTCATTTGGCCCATAAAGTATTCATGATACTAAAGAGTCTCCCCATAACATTGCTCATGCATATCCCATGGAGAATGGTACAAACCCAGTTCCAGACTATCATGGGAATTAATTAATGGGTGGATGTTGTTTTTTGCCGTCACGTCTAAAATTTGAAAATATTTGGTTCTTAGGGTGTAATGTTTTGATTATTGATTATGCAGTTGAACATTTTGGGATTGTTTGTTAAGGGTATTTAGTTAATGGGTGAATGATATTTTTGTGAACTGGCTGCCTAAATTTCCAATATCCAGTTCTTAGGGTTTAAGGTTTTTGATTGTTGATTGTCTGATTGAGCATTTTAGTTCCTTTTTCCAAACTGCTTAACGGGTCGATGCTCTTTTTGTGAACAGCCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAGGTTTTCGATTATTCTTGTTTGATTCTTCAAGTTAATAGTGAAATATATGTAGTTTTATCACTGGAGGTTTGGCCATTAAATATTCTGGTGTTCCTCCTGATTTGTGTTTGAAGCTATTTGCTGGCAACGATGTTGATGA</genome_strand>
        <mrna_strand>CTACAAAACCTACTTCCATTTTGCTCTTCTCCATTAGCTCCGACGCCGACATCCTCTGCACTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCGGGGAAGACGAAGAATAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGACGCAGGAGGGAAGAGAAAGTCTGCGGCCTTCAATGATTAATAACAAGGAGAAAAGAGCATCTGTACATGCTAAGTTGAAGCATCACAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTAGAGCTAGGGGAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCAGCGAAGATGGTACCCCGTACGATTGACAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAG.................................................................................................................CTATTTGCTGGCAACGATGTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357355" ref_strand="+" ref_description="SGN-E357355 [cTOS-23-B7]">
      <seq>gacaacagatagaggctatgttgtgggtgcataggaactataaggtgtacgattattgtagggatcctaggagggaccatactcacacacctgagtgttagtgtgtgaacgatcgtaaaataaaaaaaatattaaattgtatcgaatttatcgtttgaatataagggggaaaaaaagtagccttgagatggtcccatttgccattaattgttgcaaaaagttgttgaagcgtccaaggtgttcctttttttttttgattgaaatttatataaatgtattaaaaatgtttgatttaagtttcatgggagaaaaaaaagagtcaagaatattgaagaattatagaagatatatcttgccctattttctcatgaattgcttttaattgtaatttttatttgatcaaagtgtgtatttgtttctttatttgtgattgttgaagaaaaaaatatatatatattatattagccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="15203" stop="14127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14903" g_stop="14425" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E357355" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14903" e_stop="14425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAACAGATAGAGGCTATGTTGTGGGTGCATAGGAACTATAAGGTGTACGATTATTGTAGGGATCCTAGGAGGGACCATACTCACACACCTGAGTGTTAGTGTGTGAACGATCGTAAAATAAAAAAGATATTAAATTGTATCGAATTTATCGTTTGAATATAAGGGGGGAAAAAAGTAGCCTTGAGATGGTCCCATTTGCCATTAATTGTTGCAAAAAGTTGTTGAAGCGTCCAAGGTGTTCCTTTTTTTTTTTTGATTGAAATTTATATAAATGTATTAAAAATGTTTGATTTAAGTTTCATGGGAGAAAAAAAAGAGTCAAGAATATTGAAGAATTATAGAAGATATATCTTGCCCTATTTTCTCATGAATTGCTTTTAATTGTAATTTTTATTTGATCAAAGTGTGTATTTGTTTCTTTATTTGTGATTGTTGAAGAAAAAAATATATATATATTATATTAGCCAAAAGAAAATC</genome_strand>
        <mrna_strand>GACAACAGATAGAGGCTATGTTGTGGGTGCATAGGAACTATAAGGTGTACGATTATTGTAGGGATCCTAGGAGGGACCATACTCACACACCTGAGTGTTAGTGTGTGAACGATCGTAAAATAAAAAAAATATTAAATTGTATCGAATTTATCGTTTGAATATAAGGGGGAAAAAAAGTAGCCTTGAGATGGTCCCATTTGCCATTAATTGTTGCAAAAAGTTGTTGAAGCGTCCAAGGTGTTCC-TTTTTTTTTTTGATTGAAATTTATATAAATGTATTAAAAATGTTTGATTTAAGTTTCATGGGAGAAAAAAAAGAGTCAAGAATATTGAAGAATTATAGAAGATATATCTTGCCCTATTTTCTCATGAATTGCTTTTAATTGTAATTTTTATTTGATCAAAGTGTGTATTTGTTTCTTTATTTGTGATTGTTGAAGAAAAAAATATATATATATTATATTAGCCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398569" ref_strand="+" ref_description="SGN-E398569 [TUS-27-B2](-)">
      <seq>ccattaattgttgcaaaaagttgtcgaagcgtccaaggtgttcctttttttttttgattgaaatttatataaatgtattaaaaatgtttgatttaagtttcatgggagaaaaaaaagagtcaagaatattgaagaattatagaagatatatcttgccctattttctcatgaattgcttttaattgtaatttttatttgatcaaagtgtgtatttgtttctttatttgtgattgttgaagaaaaaanatatatatatattatattagccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="15003" stop="14127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14703" g_stop="14427" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E398569" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14703" e_stop="14427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTAATTGTTGCAAAAAGTTGTTGAAGCGTCCAAGGTGTTCCTTTTTTTTTTTTGATTGAAATTTATATAAATGTATTAAAAATGTTTGATTTAAGTTTCATGGGAGAAAAAAAAGAGTCAAGAATATTGAAGAATTATAGAAGATATATCTTGCCCTATTTTCTCATGAATTGCTTTTAATTGTAATTTTTATTTGATCAAAGTGTGTATTTGTTTCTTTATTTGTGATTGTTGAAGAAAAAA-ATATATATATATTATATTAGCCAAAAGAAAA</genome_strand>
        <mrna_strand>CCATTAATTGTTGCAAAAAGTTGTCGAAGCGTCCAAGGTGTTCC-TTTTTTTTTTTGATTGAAATTTATATAAATGTATTAAAAATGTTTGATTTAAGTTTCATGGGAGAAAAAAAAGAGTCAAGAATATTGAAGAATTATAGAAGATATATCTTGCCCTATTTTCTCATGAATTGCTTTTAATTGTAATTTTTATTTGATCAAAGTGTGTATTTGTTTCTTTATTTGTGATTGTTGAAGAAAAAANATATATATATATTATATTAGCCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354348" ref_strand="+" ref_description="SGN-E354348 [cTOS-17-G1]">
      <seq>cctcttgtcgtcgagcgccttctagctctccttcggggggtggagggttgagtcgacaacagatagaggctatgttgtgggtgcataggaactataaggtgtacgattattgtagggatcctaggagggaccatactcacacacctgagtgttagtgtgtgaacgatcgtaaaataaaaaaaatattaaattgtatcgaatttatcgtttgaatataagggggaaaaaaagtagccttgagatggtcccatttgccattaattgttgcaaaaagttgttgaagcgtccaaggtgttcctttttttttttttgattgaaatttatataaatgtattaaaaatgtttgatttaagtttcatgggagaaaaaaaagagtccagaatattgaagaattatagaagatatatcttgccctattttctcatgaattgcttttaattggaatttttatttgatccaaaggggtatttgtttctttatttgggaatggtgaaaaaaaaaatatatattatattatatttagccccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="15257" stop="14127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14957" g_stop="14439" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="545"/>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E354348" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14957" e_stop="14439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTTGTCGTCGAGCGCCTTCTAGCTCTCCTTCGGGGGGTGGAGGGTTGAGTCGACAACAGATAGAGGCTATGTTGTGGGTGCATAGGAACTATAAGGTGTACGATTATTGTAGGGATCCTAGGAGGGACCATACTCACACACCTGAGTGTTAGTGTGTGAACGATCGTAAAATAAAAAAGATATTAAATTGTATCGAATTTATCGTTTGAATATAAGGGGGGAAAAAAGTAGCCTTGAGATGGTCCCATTTGCCATTAATTGTTGCAAAAAGTTGTTGAAGCGTCCAAGGTGTTCC-TTTTTTTTTTTTGATTGAAATTTATATAAATGTATTAAAAATGTTTGATTTAAGTTTCATGGGAGAAAAAAAAGAGTCAAGAATATTGAAGAATTATAGAAGATATATCTTGCCCTATTTTCTCATGAATTGCTTTTAATTGTAATTTTTATTTGATCAAAGTGTGTATTTGTTTCTTTATTTGTGATTGTTGAAGAAAAAAATATATA-TATATTATATTA</genome_strand>
        <mrna_strand>CCTCTTGTCGTCGAGCGCCTTCTAGCTCTCCTTCGGGGGGTGGAGGGTTGAGTCGACAACAGATAGAGGCTATGTTGTGGGTGCATAGGAACTATAAGGTGTACGATTATTGTAGGGATCCTAGGAGGGACCATACTCACACACCTGAGTGTTAGTGTGTGAACGATCGTAAAATAAAAAAAATATTAAATTGTATCGAATTTATCGTTTGAATATAAGGGGGAAAAAAAGTAGCCTTGAGATGGTCCCATTTGCCATTAATTGTTGCAAAAAGTTGTTGAAGCGTCCAAGGTGTTCCTTTTTTTTTTTTTGATTGAAATTTATATAAATGTATTAAAAATGTTTGATTTAAGTTTCATGGGAGAAAAAAAAGAGTCCAGAATATTGAAGAATTATAGAAGATATATCTTGCCCTATTTTCTCATGAATTGCTTTTAATTGGAATTTTTATTTGATCCAAAGGGGTATTTGTTTCTTTATTTGGGAATGGTGAAAAAAAAAATATATATTATATTATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357912" ref_strand="+" ref_description="SGN-E357912 [cTOS-24-P3]">
      <seq>acgaattaaagcggattatcgataccaaccttttatcggaaaatatagtaataatttcaaggttgaaggttgcgcggcctacgagagtccctcttgtcgtcgagcgccttctagctctccttcggggggtggagggttgagtcgacaacagatagaggctatgttgtgggtgcataggaactataaggtgtacgattattgtagggatcctaggagggaccatactcacacacctgagtgttagtgtgtgaacgatcgtaaaataaaaaaaatattaaattgtatcgaatttatcgtttgaatataagggggaaaaaaagtagccttgagatggtcccatttgccattaattgttgcaaaaagttgttgaagcgtccaaggtgttccttttttttttgattgaaatttatataaatgtattaaaaatgtttgatttaagtttcatgggagaaaaaaaagagtcaagaatattgaagaattatagaagatatatcttgccctaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="15346" stop="14243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15046" g_stop="14544" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14543" i_stop="14464" i_length="80">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.463" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14463" g_stop="14458" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="507" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E357912" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15046" e_stop="14544"/>
          <exon e_start="14463" e_stop="14458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATTAAAGCGGATTATCGATACCAACCTTTTATCGGAAAATATAGTAATAATTTCAAGGTTGAAGGTTGCGCGGCCTACGAGAGTCCCTCTTGTCGTCGAGCGCCTTCTAGCTCTCCTTCGGGGGGTGGAGGGTTGAGTCGACAACAGATAGAGGCTATGTTGTGGGTGCATAGGAACTATAAGGTGTACGATTATTGTAGGGATCCTAGGAGGGACCATACTCACACACCTGAGTGTTAGTGTGTGAACGATCGTAAAATAAAAAAGATATTAAATTGTATCGAATTTATCGTTTGAATATAAGGGGGGAAAAAAGTAGCCTTGAGATGGTCCCATTTGCCATTAATTGTTGCAAAAAGTTGTTGAAGCGTCCAAGGTGTTCCTTTTTTTTTTTTGATTGAAATTTATATAAATGTATTAAAAATGTTTGATTTAAGTTTCATGGGAGAAAAAAAAGAGTCAAGAATATTGAAGAATTATAGAAGATATATCTTGCCCTATTTTCTCATGAATTGCTTTTAATTGTAATTTTTATTTGATCAAAGTGTGTATTTGTTTCTTTATTTGTGATTGTTGAAGAAAAAA</genome_strand>
        <mrna_strand>ACGAATTAAAGCGGATTATCGATACCAACCTTTTATCGGAAAATATAGTAATAATTTCAAGGTTGAAGGTTGCGCGGCCTACGAGAGTCCCTCTTGTCGTCGAGCGCCTTCTAGCTCTCCTTCGGGGGGTGGAGGGTTGAGTCGACAACAGATAGAGGCTATGTTGTGGGTGCATAGGAACTATAAGGTGTACGATTATTGTAGGGATCCTAGGAGGGACCATACTCACACACCTGAGTGTTAGTGTGTGAACGATCGTAAAATAAAAAAAATATTAAATTGTATCGAATTTATCGTTTGAATATAAGGGGGAAAAAAAGTAGCCTTGAGATGGTCCCATTTGCCATTAATTGTTGCAAAAAGTTGTTGAAGCGTCCAAGGTGTTCC--TTTTTTTTTTGATTGAAATTTATATAAATGTATTAAAAATGTTTGATTTAAGTTTCATGGGAGAAAAAAAAGAGTCAAGAATATTGAAGAATTATAGAAGATATATCTTGCCCT................................................................................AAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354471" ref_strand="+" ref_description="SGN-E354471 [cTOS-17-H2]">
      <seq>cctcttgtcgtcgagcgccttctagctctccttcggggggtggagggttgagtcgacaacagatagaggctatgttgtgggtgcataggaactataaggtgtacgattattgtagggatcctaggagggaccatactcacacacctgagtgttagtgtgtgaacgatcgtaaaataaaaaaaatattaaattgtatcgaatttatcgtttgaatataagggggaaaaaaagtagccttgagatggtcccatttgccattaattgttgcaaaaagttgttgaagcgtccaaggtgttcctttttttttttttgattgaaatttatataaatgtattaaaaatgtttgatttaagtttcatgggagaaaaaaaagagtcaagaatattgaagaattatagaagatatatcttgccctattttctcatgaattgcttttaattgtaatttttatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="15257" stop="14205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14957" g_stop="14505" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E354471" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14957" e_stop="14505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTTGTCGTCGAGCGCCTTCTAGCTCTCCTTCGGGGGGTGGAGGGTTGAGTCGACAACAGATAGAGGCTATGTTGTGGGTGCATAGGAACTATAAGGTGTACGATTATTGTAGGGATCCTAGGAGGGACCATACTCACACACCTGAGTGTTAGTGTGTGAACGATCGTAAAATAAAAAAGATATTAAATTGTATCGAATTTATCGTTTGAATATAAGGGGGGAAAAAAGTAGCCTTGAGATGGTCCCATTTGCCATTAATTGTTGCAAAAAGTTGTTGAAGCGTCCAAGGTGTTCC-TTTTTTTTTTTTGATTGAAATTTATATAAATGTATTAAAAATGTTTGATTTAAGTTTCATGGGAGAAAAAAAAGAGTCAAGAATATTGAAGAATTATAGAAGATATATCTTGCCCTATTTTCTCATGAATTGCTTTTAATTGTAATTTTTATTTG</genome_strand>
        <mrna_strand>CCTCTTGTCGTCGAGCGCCTTCTAGCTCTCCTTCGGGGGGTGGAGGGTTGAGTCGACAACAGATAGAGGCTATGTTGTGGGTGCATAGGAACTATAAGGTGTACGATTATTGTAGGGATCCTAGGAGGGACCATACTCACACACCTGAGTGTTAGTGTGTGAACGATCGTAAAATAAAAAAAATATTAAATTGTATCGAATTTATCGTTTGAATATAAGGGGGAAAAAAAGTAGCCTTGAGATGGTCCCATTTGCCATTAATTGTTGCAAAAAGTTGTTGAAGCGTCCAAGGTGTTCCTTTTTTTTTTTTTGATTGAAATTTATATAAATGTATTAAAAATGTTTGATTTAAGTTTCATGGGAGAAAAAAAAGAGTCAAGAATATTGAAGAATTATAGAAGATATATCTTGCCCTATTTTCTCATGAATTGCTTTTAATTGTAATTTTTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265390" ref_strand="+" ref_description="SGN-E265390 [cLEI-9-M1]">
      <seq>ttgtcgatgatgtccctattagaagataccctaaaaaaaatgatgcaacatttgcacaaagacctatgtatgtctatggttcaatttgggatgcatcatcttgggcaacggaggaaggacgaattaaagcggattatcgataccaaccttttatcggaaaatatagtaataatttcaaggttgaaggttgcgcggcctacgagagtccctcttgtcgtcgagcgccttctagctctccttcggggggtggagggttgagtcgacaacagatagaggctatgttgtgggtgcataggaactataaggtgtacgattattgtagggatcctaggagggaccatactcacacacctgagtgttaatgtgtgaaccgatcgtaaaataaaaaaaatattaaattgtatcgaatttatcgtttgaatataagggggaaaaaaagtagccttgagatggtcccatttgccattaattgttgcaaaaagttgttgaagcgtccaaagtgttccttttttttttttgattgaaatttatataaatgtattaaaaatgtttgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="15464" stop="14309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15164" g_stop="14609" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E265390" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15164" e_stop="14609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTCTATGGTTCAATTTGGGATGCATCATCTTGGGCAACGGAGGAAGGACGAATTAAAGCGGATTATCGATACCAACCTTTTATCGGAAAATATAGTAATAATTTCAAGGTTGAAGGTTGCGCGGCCTACGAGAGTCCCTCTTGTCGTCGAGCGCCTTCTAGCTCTCCTTCGGGGGGTGGAGGGTTGAGTCGACAACAGATAGAGGCTATGTTGTGGGTGCATAGGAACTATAAGGTGTACGATTATTGTAGGGATCCTAGGAGGGACCATACTCACACACCTGAGTGTTAGTGTGTGAA-CGATCGTAAAATAAAAAAGATATTAAATTGTATCGAATTTATCGTTTGAATATAAGGGGGGAAAAAAGTAGCCTTGAGATGGTCCCATTTGCCATTAATTGTTGCAAAAAGTTGTTGAAGCGTCCAAGGTGTTCCTTTTTTTTTTTTGATTGAAATTTATATAAATGTATTAAAAATGTTTGATTT</genome_strand>
        <mrna_strand>TTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACATTTGCACAAAGACCTATGTATGTCTATGGTTCAATTTGGGATGCATCATCTTGGGCAACGGAGGAAGGACGAATTAAAGCGGATTATCGATACCAACCTTTTATCGGAAAATATAGTAATAATTTCAAGGTTGAAGGTTGCGCGGCCTACGAGAGTCCCTCTTGTCGTCGAGCGCCTTCTAGCTCTCCTTCGGGGGGTGGAGGGTTGAGTCGACAACAGATAGAGGCTATGTTGTGGGTGCATAGGAACTATAAGGTGTACGATTATTGTAGGGATCCTAGGAGGGACCATACTCACACACCTGAGTGTTAATGTGTGAACCGATCGTAAAATAAAAAAAATATTAAATTGTATCGAATTTATCGTTTGAATATAAGGGGGAAAAAAAGTAGCCTTGAGATGGTCCCATTTGCCATTAATTGTTGCAAAAAGTTGTTGAAGCGTCCAAAGTGTTCCTTTTTTTTTTTTGATTGAAATTTATATAAATGTATTAAAAATGTTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E621831" ref_strand="+" ref_description="SGN-E621831 [72191]">
      <seq>taaaaattcaggaggaagtggttttaaatctctaaaaaattatcgttctggttattttgggacttatattaagctacaacctggtttcactgctggaattattacttctttctatctttcaaacaatcaagattatccagggaaccatgatgaaattgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaatgtgtatataagaggaagtggagatggaaatattattggaagagaaatgaaatttcatctttggtttgatccaacaaaagattatcacaattatgcaatcctttgggaccccaatgagatcatattttttgtcgatgatgtcccaattagaagataccctaagaaaaatgatgcaacatttccagaaagacctatgtatgtatatggttcaatttgggatgcatcatcttgggcaacggaggaaggacgaattaaagccgattatcaatatcaaccgttcgtcggaaaatacagtaacaatttcaagctcgcaggttgtgcggcctacgagagcccctcgtgtcgtcgagcgccttctagctctccttcagggggtggagggttgagtcgacaacagatagaggctatgttgtgggtgcataggaactataaggtgtacgattattgtagggaccctaggagggaccatactcacacacctgagtgttaatgagtgaacgatcgtaaaaaaaagaaattaaattgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="16573" stop="14461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="115" r_length="104" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16076" g_stop="15859" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="333" r_length="218" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15858" i_stop="15170" i_length="689">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15169" g_stop="14761" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="739" r_length="406" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E621831" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E621831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15859"/>
          <exon e_start="15169" e_stop="14761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCATGTTAGTATATTTTTTTTAAAAACTTCTTCTTTTTTTTTGCTTATGGTCTATTTTTTTTAGTCTTTTTCATAAATAGTTTAGTGTTAAAAAAATATGTTCAAAAGTAGAAATTTTTTAACGTACAGATACGTTGATAGTGTTACGAATTTCAAACTTAAGCAGTAAAACAATTTAAAATATTTTAATAATTATTGAAATTCATGACAGCGTTATACGAAATTCAAATTTGTAAAAAAAAAAAATACATAACAATGTTTTAGATTTTAAATTCTAACAATTAATTGAATTTGTGTTTATTGTTTGATTAGAAATATGAAAGTAACATTTCCAAATTGAGTGTAAAAGCTATTTTAGTACTATAGAAGATCACTCACTTTTTTATATTATATGTTAATACCAATATAGAAATTTGTGATTAATTCATAAGTGATTTTGACGGTGTAAAAATTTGTATATTTAATTCTAAATATAAATTTTAAAAATGTCACAACCATGGGGTCATGATATAATTATGCTATTTTTGTCAAAAAGCATTATTTTTCATAAATGTAACCAATATGACCCCATGTCCAAAAACAACAATAACAACTACTCTACTACTACTTTTTGTTTTTTGTTTTTTTTTTTCCTCTTGTGTGTCTTTGCTATTATTATTATTATTATTTATTTATTTGAATATGACTTTGTAGATTTTTTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTCTATGGTTCAATTTGGGATGCATCATCTTGGGCAACGGAGGAAGGACGAATTAAAGCGGATTATCGATACCAACCTTTTATCGGAAAATATAGTAATAATTTCAAGGTTGAAGGTTGCGCGGCCTACGAGAGTCCCTCTTGTCGTCGAGCGCCTTCTAGCTCTCCTTCGGGGGGTGGAGGGTTGAGTCGACAACAGATAGAGGCTATGTTGTGGGTGCATAGGAACTATAAGGTGTACGATTATTGTAGGGATCCTAGGAGGGACCATACTCACACACCTGAGTGTTAGTGTGTGAACGATCGTAAAATAAAAAAGATATTAAATTGTATC</genome_strand>
        <mrna_strand>GAGGAAGTGGTTTTAAATCTCTAAAAAATTATCGTTCTGGTTATTTTGGGACTTATATTAAGCTACAACCTGGTTTCACTGCTGGAATTATTACTTCTTTCTAT......................................................................................CTTTCAAACAATCAAGATTATCCAGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTGTCGATGATGTCCCAATTAGAAGATACCCTAAGAAAAATGATGCAACATTTCCAGAAAGACCTATGTATGTATATGGTTCAATTTGGGATGCATCATCTTGGGCAACGGAGGAAGGACGAATTAAAGCCGATTATCAATATCAACCGTTCGTCGGAAAATACAGTAACAATTTCAAGCTCGCAGGTTGTGCGGCCTACGAGAGCCCCTCGTGTCGTCGAGCGCCTTCTAGCTCTCCTTCAGGGGGTGGAGGGTTGAGTCGACAACAGATAGAGGCTATGTTGTGGGTGCATAGGAACTATAAGGTGTACGATTATTGTAGGGACCCTAGGAGGGACCATACTCACACACCTGAGTGTTAATGAGTGAACGATCGT--AA-AAAAAAGAAATTAAATTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747448" ref_strand="+" ref_description="SGN-E747448 [GI|42795463]">
      <seq>ctaacactcactcaacaccaaagtaccattaaaacaactttttggattttatatccaaacaattattatggaattccttctttatttacttttatttttcttactcaattcaagattaatcaattctcaaggtcccccttcacctggctactatcctagttctagggcacaatctataggatttaaccaaggttttagaaacctttggggtcctcaacatcaatcattggaccaaagtaccttaactatatggcttgataaaaattcaggaggaagtggttttaaatctctaaagaattatcgttccggttattttgggagtagtattaagctacaacctggttttactgctggaattattacttctttttatctttcaaataatcaagattatccggggaaccatgatgaaattgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaatgtgtatataagaggaagtggagatggaaatattattggaagagaaatgaaatttcatctttggtttgatccaacaaaagattatcacaattatgcaatcctttgggaccccaatgagatcatattttttgtcgatgatgtccctattagaagataccctaaaaaaaatgatgcaacatttgcacaaagacctatgtatgtctatggttcaatttgggatgcatcatcttgggcaacggaggaaggacgaattaaagcggattatcgataccaaccttttatcggaaaatatagtaataatttcaaggttgaaggttgcgcggcctacgagagtccctcttgtcgtcgagcgccttctagctctccttcggggggtggagggttgagtcgacaacagatagaggctatgttgtgggtgcataggaactataaggtgtacgattattgtagggatcctaggagggaccatactcacacacctgagtgttagtgtgtggaccgttcgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17274" stop="14486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16974" g_stop="16706" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="373" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="15859" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="591" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15858" i_stop="15170" i_length="689">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15169" g_stop="14786" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="976" r_length="385" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E747448" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>975</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16974" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15859"/>
          <exon e_start="15169" e_stop="14786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACACTCACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCATGTTAGTATATTTTTTTTAAAAACTTCTTCTTTTTTTTTGCTTATGGTCTATTTTTTTTAGTCTTTTTCATAAATAGTTTAGTGTTAAAAAAATATGTTCAAAAGTAGAAATTTTTTAACGTACAGATACGTTGATAGTGTTACGAATTTCAAACTTAAGCAGTAAAACAATTTAAAATATTTTAATAATTATTGAAATTCATGACAGCGTTATACGAAATTCAAATTTGTAAAAAAAAAAAATACATAACAATGTTTTAGATTTTAAATTCTAACAATTAATTGAATTTGTGTTTATTGTTTGATTAGAAATATGAAAGTAACATTTCCAAATTGAGTGTAAAAGCTATTTTAGTACTATAGAAGATCACTCACTTTTTTATATTATATGTTAATACCAATATAGAAATTTGTGATTAATTCATAAGTGATTTTGACGGTGTAAAAATTTGTATATTTAATTCTAAATATAAATTTTAAAAATGTCACAACCATGGGGTCATGATATAATTATGCTATTTTTGTCAAAAAGCATTATTTTTCATAAATGTAACCAATATGACCCCATGTCCAAAAACAACAATAACAACTACTCTACTACTACTTTTTGTTTTTTGTTTTTTTTTTTCCTCTTGTGTGTCTTTGCTATTATTATTATTATTATTTATTTATTTGAATATGACTTTGTAGATTTTTTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTCTATGGTTCAATTTGGGATGCATCATCTTGGGCAACGGAGGAAGGACGAATTAAAGCGGATTATCGATACCAACCTTTTATCGGAAAATATAGTAATAATTTCAAGGTTGAAGGTTGCGCGGCCTACGAGAGTCCCTCTTGTCGTCGAGCGCCTTCTAGCTCTCCTTCGGGGGGTGGAGGGTTGAGTCGACAACAGATAGAGGCTATGTTGTGGGTGCATAGGAACTATAAGGTGTACGATTATTGTAGGGATCCTAGGAGGGACCATACTCACACACCTGAGTGTTAGTGTGT-GAACGATCGTAA</genome_strand>
        <mrna_strand>CTAACACTCACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATTCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCCGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTAT......................................................................................CTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACATTTGCACAAAGACCTATGTATGTCTATGGTTCAATTTGGGATGCATCATCTTGGGCAACGGAGGAAGGACGAATTAAAGCGGATTATCGATACCAACCTTTTATCGGAAAATATAGTAATAATTTCAAGGTTGAAGGTTGCGCGGCCTACGAGAGTCCCTCTTGTCGTCGAGCGCCTTCTAGCTCTCCTTCGGGGGGTGGAGGGTTGAGTCGACAACAGATAGAGGCTATGTTGTGGGTGCATAGGAACTATAAGGTGTACGATTATTGTAGGGATCCTAGGAGGGACCATACTCACACACCTGAGTGTTAGTGTGTGGACCGTTCGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268450" ref_strand="+" ref_description="SGN-E268450 [cLEI-13-J2]">
      <seq>ttgggagtagtattaagctacaacctggttttactgctggaattattacttctttttatctttcaaataatcaagattatccggggaaccatgatgaaattgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaatgtgtatataagaggaagtggagatggaaatattattggaagagaaatgaaatttcatctttggtttgatccaacaaaagattatcacaattatgcaatcctttgggaccccaatgagatcatattttttgtcgatgatgtccctattagaagataccctaaaaaaaatgatgcaacatttccacaaagacctatgtatgtctatggttcaattggggatgcatcatcttgggcaacggaggaaggacgaattaaagcggattatcgataccaaccttttatcggaaaatatagtaataatttcaaggttgaaggttgcgcggcctacgagagtccctcttgtcgtcgagcgccttctagctctccttcggggggtggagggttgagtcgacaacagatagaggctatgttgtgggtgcataggaactataaggtgtacgattattgtagggatcctaggagggaccatactcacacacctgagtgttagtgtgtgaacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="16521" stop="14492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16221" g_stop="16163" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16076" g_stop="15859" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="277" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15858" i_stop="15170" i_length="689">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15169" g_stop="14792" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="655" r_length="378" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E268450" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16221" e_stop="16163"/>
          <exon e_start="16076" e_stop="15859"/>
          <exon e_start="15169" e_stop="14792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCATGTTAGTATATTTTTTTTAAAAACTTCTTCTTTTTTTTTGCTTATGGTCTATTTTTTTTAGTCTTTTTCATAAATAGTTTAGTGTTAAAAAAATATGTTCAAAAGTAGAAATTTTTTAACGTACAGATACGTTGATAGTGTTACGAATTTCAAACTTAAGCAGTAAAACAATTTAAAATATTTTAATAATTATTGAAATTCATGACAGCGTTATACGAAATTCAAATTTGTAAAAAAAAAAAATACATAACAATGTTTTAGATTTTAAATTCTAACAATTAATTGAATTTGTGTTTATTGTTTGATTAGAAATATGAAAGTAACATTTCCAAATTGAGTGTAAAAGCTATTTTAGTACTATAGAAGATCACTCACTTTTTTATATTATATGTTAATACCAATATAGAAATTTGTGATTAATTCATAAGTGATTTTGACGGTGTAAAAATTTGTATATTTAATTCTAAATATAAATTTTAAAAATGTCACAACCATGGGGTCATGATATAATTATGCTATTTTTGTCAAAAAGCATTATTTTTCATAAATGTAACCAATATGACCCCATGTCCAAAAACAACAATAACAACTACTCTACTACTACTTTTTGTTTTTTGTTTTTTTTTTTCCTCTTGTGTGTCTTTGCTATTATTATTATTATTATTTATTTATTTGAATATGACTTTGTAGATTTTTTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTCTATGGTTCAATTTGGGATGCATCATCTTGGGCAACGGAGGAAGGACGAATTAAAGCGGATTATCGATACCAACCTTTTATCGGAAAATATAGTAATAATTTCAAGGTTGAAGGTTGCGCGGCCTACGAGAGTCCCTCTTGTCGTCGAGCGCCTTCTAGCTCTCCTTCGGGGGGTGGAGGGTTGAGTCGACAACAGATAGAGGCTATGTTGTGGGTGCATAGGAACTATAAGGTGTACGATTATTGTAGGGATCCTAGGAGGGACCATACTCACACACCTGAGTGTTAGTGTGTGAACGA</genome_strand>
        <mrna_strand>TTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTAT......................................................................................CTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTCTATGGTTCAATTGGGGATGCATCATCTTGGGCAACGGAGGAAGGACGAATTAAAGCGGATTATCGATACCAACCTTTTATCGGAAAATATAGTAATAATTTCAAGGTTGAAGGTTGCGCGGCCTACGAGAGTCCCTCTTGTCGTCGAGCGCCTTCTAGCTCTCCTTCGGGGGGTGGAGGGTTGAGTCGACAACAGATAGAGGCTATGTTGTGGGTGCATAGGAACTATAAGGTGTACGATTATTGTAGGGATCCTAGGAGGGACCATACTCACACACCTGAGTGTTAGTGTGTGAACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391670" ref_strand="+" ref_description="SGN-E391670 [TUS-27-B2]">
      <seq>tttgggagtagtattaagctacaacctggttttactgctggaattattacttctttttatctttcaaataatcaagattatccggggaaccatgatgaaattgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaatgtgtatataagaggaagtggagatggaaatattattggaagagaaatgaaatttcatctttggtttgatccaacaaaagattatcacaattatgcaatcctttgggaccccaatgagatcatattttttgtcgatgatgtccctattagaagataccctaaaaaaaatgatgcaacatttccacaaagacctatgtatgtctatggttcaatttgggatgcatcatcttgggcaacggaggaaggacgaattaaagcggattatcgataccgggccttttatcggaaaatatagtaataatttcaaggttgaaggttgcgcggcctacgagagtccctcttgtcgtcgagcgccttctagctctcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="16522" stop="14625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16222" g_stop="16163" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16076" g_stop="15859" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="278" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15858" i_stop="15170" i_length="689">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15169" g_stop="14925" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="524" r_length="246" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E391670" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16222" e_stop="16163"/>
          <exon e_start="16076" e_stop="15859"/>
          <exon e_start="15169" e_stop="14925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCATGTTAGTATATTTTTTTTAAAAACTTCTTCTTTTTTTTTGCTTATGGTCTATTTTTTTTAGTCTTTTTCATAAATAGTTTAGTGTTAAAAAAATATGTTCAAAAGTAGAAATTTTTTAACGTACAGATACGTTGATAGTGTTACGAATTTCAAACTTAAGCAGTAAAACAATTTAAAATATTTTAATAATTATTGAAATTCATGACAGCGTTATACGAAATTCAAATTTGTAAAAAAAAAAAATACATAACAATGTTTTAGATTTTAAATTCTAACAATTAATTGAATTTGTGTTTATTGTTTGATTAGAAATATGAAAGTAACATTTCCAAATTGAGTGTAAAAGCTATTTTAGTACTATAGAAGATCACTCACTTTTTTATATTATATGTTAATACCAATATAGAAATTTGTGATTAATTCATAAGTGATTTTGACGGTGTAAAAATTTGTATATTTAATTCTAAATATAAATTTTAAAAATGTCACAACCATGGGGTCATGATATAATTATGCTATTTTTGTCAAAAAGCATTATTTTTCATAAATGTAACCAATATGACCCCATGTCCAAAAACAACAATAACAACTACTCTACTACTACTTTTTGTTTTTTGTTTTTTTTTTTCCTCTTGTGTGTCTTTGCTATTATTATTATTATTATTTATTTATTTGAATATGACTTTGTAGATTTTTTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTCTATGGTTCAATTTGGGATGCATCATCTTGGGCAACGGAGGAAGGACGAATTAAAGCGGATTATCGATACC-AACCTTTTATCGGAAAATATAGTAATAATTTCAAGGTTGAAGGTTGCGCGGCCTACGAGAGTCCCTCTTGTCGTCGAGCGCCTTCTAGCTCTCCTT</genome_strand>
        <mrna_strand>TTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTAT......................................................................................CTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTCTATGGTTCAATTTGGGATGCATCATCTTGGGCAACGGAGGAAGGACGAATTAAAGCGGATTATCGATACCGGGCCTTTTATCGGAAAATATAGTAATAATTTCAAGGTTGAAGGTTGCGCGGCCTACGAGAGTCCCTCTTGTCGTCGAGCGCCTTCTAGCTCTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462802" ref_strand="+" ref_description="SGN-E462802 [cPRO-12-B22]">
      <seq>cactcaaccaaagtgccattaaaacaacttttggattttacccaaacaattattatggaatttcttctttctttacttctatttttcttattcaatgcaagattaatcaatgctcaaggccccccttcacctggctactatcctagttctagggtacaatctttaggatttaaccaaggttttaggaacctttggggtcctcaacatcaatcattggaccaaagtaccttaactatatggcttgataaaaattcaggaggaagtggttttaaatctctaaaaaattatcgttctggttattttgggacttatattaagctacaacctggtttcactgctggaattattacttctttctatctttcaaacaatcaagattatccagggaaccatgatgaaattgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaatgtgtatataagaggaagtggagatggaaatattattggaagagaaatgaaatttcatctttggtttgatccaacaaaagattatcacaattatgcaatcctttgggaccccaatgagatcatattttttgtcgatgatgtcccaattagaagataccctaagaaaaatgatgcaacatttccacaaagacctatgtatgtatatggttcaatttgggatgcatcatcttgggcaacggaggaaggacgaattaaagccgattnatcatatcaaccgttcgtcggaaaatacagtaacaatttcaagctcgcaggttgtgcggccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17266" stop="14666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16966" g_stop="16706" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="360" r_length="104" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="15859" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="578" r_length="218" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15858" i_stop="15170" i_length="689">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15169" g_stop="14966" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="782" r_length="204" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E462802" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16966" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15859"/>
          <exon e_start="15169" e_stop="14966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCATGTTAGTATATTTTTTTTAAAAACTTCTTCTTTTTTTTTGCTTATGGTCTATTTTTTTTAGTCTTTTTCATAAATAGTTTAGTGTTAAAAAAATATGTTCAAAAGTAGAAATTTTTTAACGTACAGATACGTTGATAGTGTTACGAATTTCAAACTTAAGCAGTAAAACAATTTAAAATATTTTAATAATTATTGAAATTCATGACAGCGTTATACGAAATTCAAATTTGTAAAAAAAAAAAATACATAACAATGTTTTAGATTTTAAATTCTAACAATTAATTGAATTTGTGTTTATTGTTTGATTAGAAATATGAAAGTAACATTTCCAAATTGAGTGTAAAAGCTATTTTAGTACTATAGAAGATCACTCACTTTTTTATATTATATGTTAATACCAATATAGAAATTTGTGATTAATTCATAAGTGATTTTGACGGTGTAAAAATTTGTATATTTAATTCTAAATATAAATTTTAAAAATGTCACAACCATGGGGTCATGATATAATTATGCTATTTTTGTCAAAAAGCATTATTTTTCATAAATGTAACCAATATGACCCCATGTCCAAAAACAACAATAACAACTACTCTACTACTACTTTTTGTTTTTTGTTTTTTTTTTTCCTCTTGTGTGTCTTTGCTATTATTATTATTATTATTTATTTATTTGAATATGACTTTGTAGATTTTTTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTCTATGGTTCAATTTGGGATGCATCATCTTGGGCAACGGAGGAAGGACGAATTAAAGCGGATTATCGATACCAACCTTTTATCGGAAAATATAGTAATAATTTCAAGGTTGAAGGTTGCGCGGCCTA</genome_strand>
        <mrna_strand>CACTC-A-ACCAAAGTGCCATTAAAACAAC-TTTTGGA-TTT-TACCCAAACAATTATTATGGAATTTCTTCTTTCTTTACTTCTATTTTTCTTATTCAATGCAAGATTAATCAATGCTCAAGGCCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGTACAATCTTTAGGATTTAACCAAGGTTTTAGGAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTTAAATCTCTAAAAAATTATCGTTCTGGTTATTTTGGGACTTATATTAAGCTACAACCTGGTTTCACTGCTGGAATTATTACTTCTTTCTAT......................................................................................CTTTCAAACAATCAAGATTATCCAGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTGTCGATGATGTCCCAATTAGAAGATACCCTAAGAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTATATGGTTCAATTTGGGATGCATCATCTTGGGCAACGGAGGAAGGACGAATTAAAGCCGATTNATCATATCAACCGTTCGTCGGAAAATACAGTAACAATTTCAAGCTCGCAGGTTGTGCGGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602139" ref_strand="+" ref_description="SGN-E602139 [55195]">
      <seq>ctaacactcactcaaccaaagtgccattaaaacaacttttggattttatccaaacaattattatggaatttcttctttctttacttctatttttcttattcaatgcaagattaatcaatgctcaaggccccccttcacctggctactatcctagttctagggtacaatctttagggatttaaccaaggttttaggaacctttggggtcctcaacatcaatcattggaccaaagtaccttaactatatggcttgataaaaattcaggaggaagtggttttaaatctctaaaaaattatcgttctggttattttgggacttatattaagctacaacctggtttcactgctggaattattacttctttctatctttcaaacaatcaagattatccagggaaccatgatgaaattgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaatgtgtatataagaggaagtggagatggaaatattattggaagagaaatgaaatttcatctttggtttgatccaacaaaagattatcacaattatgcaatcctttgggaccccaatgagatcatattttttgtcgatgatgtcccaattagaagataccctaagaaaaatgatgcaacatttccacaaagacctatgtatgtatatggttcaatttgggatgcatcatcttgggccacggaggaaggacgaattaaagcggaattatcgataccaaccgttcgttggaaaatacagtcaataattttcaagctcgcggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17274" stop="14678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16974" g_stop="16706" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="369" r_length="104" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="15859" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="587" r_length="218" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15858" i_stop="15170" i_length="689">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15169" g_stop="14978" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="782" r_length="195" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E602139" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E602139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16974" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15859"/>
          <exon e_start="15169" e_stop="14978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACACTCACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATA-GGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCATGTTAGTATATTTTTTTTAAAAACTTCTTCTTTTTTTTTGCTTATGGTCTATTTTTTTTAGTCTTTTTCATAAATAGTTTAGTGTTAAAAAAATATGTTCAAAAGTAGAAATTTTTTAACGTACAGATACGTTGATAGTGTTACGAATTTCAAACTTAAGCAGTAAAACAATTTAAAATATTTTAATAATTATTGAAATTCATGACAGCGTTATACGAAATTCAAATTTGTAAAAAAAAAAAATACATAACAATGTTTTAGATTTTAAATTCTAACAATTAATTGAATTTGTGTTTATTGTTTGATTAGAAATATGAAAGTAACATTTCCAAATTGAGTGTAAAAGCTATTTTAGTACTATAGAAGATCACTCACTTTTTTATATTATATGTTAATACCAATATAGAAATTTGTGATTAATTCATAAGTGATTTTGACGGTGTAAAAATTTGTATATTTAATTCTAAATATAAATTTTAAAAATGTCACAACCATGGGGTCATGATATAATTATGCTATTTTTGTCAAAAAGCATTATTTTTCATAAATGTAACCAATATGACCCCATGTCCAAAAACAACAATAACAACTACTCTACTACTACTTTTTGTTTTTTGTTTTTTTTTTTCCTCTTGTGTGTCTTTGCTATTATTATTATTATTATTTATTTATTTGAATATGACTTTGTAGATTTTTTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTCTATGGTTCAATTTGGGATGCATCATCTTGGGCAACGGAGGAAGGACGAATTAAAGCGG-ATTATCGATACCAACCTTTTATCGGAAAATATAGT-AATAA-TTTCAAGGTTGAAGG</genome_strand>
        <mrna_strand>CTAACACTCACTC-A-ACCAAAGTGCCATTAAAACAAC-TTTTGGA-TTT-TATCCAAACAATTATTATGGAATTTCTTCTTTCTTTACTTCTATTTTTCTTATTCAATGCAAGATTAATCAATGCTCAAGGCCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGTACAATCTTTAGGGATTTAACCAAGGTTTTAGGAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTTAAATCTCTAAAAAATTATCGTTCTGGTTATTTTGGGACTTATATTAAGCTACAACCTGGTTTCACTGCTGGAATTATTACTTCTTTCTAT......................................................................................CTTTCAAACAATCAAGATTATCCAGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTGTCGATGATGTCCCAATTAGAAGATACCCTAAGAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTATATGGTTCAATTTGGGATGCATCATCTTGGGCCACGGAGGAAGGACGAATTAAAGCGGAATTATCGATACCAACCGTTCGTTGGAAAATACAGTCAATAATTTTCAAGCTCGCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392908" ref_strand="+" ref_description="SGN-E392908 [TUS-37-D9]">
      <seq>tttgtcgatgacttccctattagaagataccctaaaaaaaatgatgcaacatttccacaaagacctatgtatgtctatggttcaatttgggatgcatcatcttgggcaacggaggaaggacgaattaaagcggattatcgataccaaccttttatcggaaaatatagtaataatttcaaggttgaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="15465" stop="14678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15165" g_stop="14978" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E392908" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>188</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15165" e_stop="14978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTCTATGGTTCAATTTGGGATGCATCATCTTGGGCAACGGAGGAAGGACGAATTAAAGCGGATTATCGATACCAACCTTTTATCGGAAAATATAGTAATAATTTCAAGGTTGAAGG</genome_strand>
        <mrna_strand>TTTGTCGATGACTTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTCTATGGTTCAATTTGGGATGCATCATCTTGGGCAACGGAGGAAGGACGAATTAAAGCGGATTATCGATACCAACCTTTTATCGGAAAATATAGTAATAATTTCAAGGTTGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464983" ref_strand="+" ref_description="SGN-E464983 [cPRO-19-B22]">
      <seq>ctaacactcactcaaccaaagtgccattaaaacaacttttggattttacccaaacaattattatggaatttcttctttctttacttctatttttcttattcaatgcaagattaatcaatgctcaaggccccccttcacctggctactatcctagttctagggtacaatctttaggatttaaccaaggttttaggaacctttggggtcctcaacatcaatcattggaccaaagtaccttaactatatggcttgataaaaattcaggaggaagtggttttaaatctctaaaaaattatcgttctggttattttgggacttatattaagctacaacctggtttcactgctggaattattacttctttctatctttcaaacaatcaagattatccagggaaccatgatgaaattgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaatgtgtatataagaggaagtggagatggaaatattattggaagagaaatgaaatttcatctttggtttgatccaacaaaagattatcacaattatgcaatcctttgggaccccaatgagatcatattttttgtcgatgatgtcccaattagaagataccctaagaaaaatgatgcaacatttccacaaagacctatgtatgtatatggttcaatttgggatgcatcatcttgggcaacggangaaggacgaattaaagccgatttatcatatcaaccgttcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17274" stop="14710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16974" g_stop="16706" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="368" r_length="104" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="15859" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="586" r_length="218" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15858" i_stop="15170" i_length="689">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15169" g_stop="15010" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="746" r_length="160" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E464983" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16974" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15859"/>
          <exon e_start="15169" e_stop="15010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACACTCACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCATGTTAGTATATTTTTTTTAAAAACTTCTTCTTTTTTTTTGCTTATGGTCTATTTTTTTTAGTCTTTTTCATAAATAGTTTAGTGTTAAAAAAATATGTTCAAAAGTAGAAATTTTTTAACGTACAGATACGTTGATAGTGTTACGAATTTCAAACTTAAGCAGTAAAACAATTTAAAATATTTTAATAATTATTGAAATTCATGACAGCGTTATACGAAATTCAAATTTGTAAAAAAAAAAAATACATAACAATGTTTTAGATTTTAAATTCTAACAATTAATTGAATTTGTGTTTATTGTTTGATTAGAAATATGAAAGTAACATTTCCAAATTGAGTGTAAAAGCTATTTTAGTACTATAGAAGATCACTCACTTTTTTATATTATATGTTAATACCAATATAGAAATTTGTGATTAATTCATAAGTGATTTTGACGGTGTAAAAATTTGTATATTTAATTCTAAATATAAATTTTAAAAATGTCACAACCATGGGGTCATGATATAATTATGCTATTTTTGTCAAAAAGCATTATTTTTCATAAATGTAACCAATATGACCCCATGTCCAAAAACAACAATAACAACTACTCTACTACTACTTTTTGTTTTTTGTTTTTTTTTTTCCTCTTGTGTGTCTTTGCTATTATTATTATTATTATTTATTTATTTGAATATGACTTTGTAGATTTTTTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTCTATGGTTCAATTTGGGATGCATCATCTTGGGCAACGGAGGAAGGACGAATTAAAGCGGATTATCGATACCAACCTTTTATC</genome_strand>
        <mrna_strand>CTAACACTCACTC-A-ACCAAAGTGCCATTAAAACAAC-TTTTGGA-TTT-TACCCAAACAATTATTATGGAATTTCTTCTTTCTTTACTTCTATTTTTCTTATTCAATGCAAGATTAATCAATGCTCAAGGCCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGTACAATCTTTAGGATTTAACCAAGGTTTTAGGAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTTAAATCTCTAAAAAATTATCGTTCTGGTTATTTTGGGACTTATATTAAGCTACAACCTGGTTTCACTGCTGGAATTATTACTTCTTTCTAT......................................................................................CTTTCAAACAATCAAGATTATCCAGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTGTCGATGATGTCCCAATTAGAAGATACCCTAAGAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTATATGGTTCAATTTGGGATGCATCATCTTGGGCAACGGANGAAGGACGAATTAAAGCCGATTTATCATATCAACCGTTCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462080" ref_strand="+" ref_description="SGN-E462080 [cPRO-10-D23]">
      <seq>ctaacactcactcaaccaaagtgccattaaaacaacttttggattttacccaaacaattattatggaatttcttctttctttacttctatttttcttattcaatgcaagattaatcaatgctcaaggccccccttcacctggctactatcctagttctagggtacaatctttaggatttaaccaaggttttaggaacctttggggtcctcaacatcaatcattggaccaaagtaccttaactatatggcttgataaaaattcaggaggaagtggttttaaatctctaaaaaattatcgttctggttattttgggacttatattaagctacaacctggtttcactgctggaattattacttctttctatctttcaaacaatcaagattatccagggaaccatgatgaaattgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaatgtgtatataagaggaagtggagatggaaatattattggaagagaaatgaaatttcatctttggtttgatccaacaaaagattatcacaattatgcaatcctttgggaccccaatgagatcatattttttgtcgatgatgtcccaattagaagataccctaagaaaaatgatgcaacatttccacaaagacctatgtatgtatatggttcaatttgggatgcatcatcttgggcaacggaagaaggacgaattaaagccgattatncatatcaaccgttcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17274" stop="14710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16974" g_stop="16706" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="368" r_length="104" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="15859" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="586" r_length="218" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15858" i_stop="15170" i_length="689">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15169" g_stop="15010" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="746" r_length="160" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E462080" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16974" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15859"/>
          <exon e_start="15169" e_stop="15010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACACTCACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCATGTTAGTATATTTTTTTTAAAAACTTCTTCTTTTTTTTTGCTTATGGTCTATTTTTTTTAGTCTTTTTCATAAATAGTTTAGTGTTAAAAAAATATGTTCAAAAGTAGAAATTTTTTAACGTACAGATACGTTGATAGTGTTACGAATTTCAAACTTAAGCAGTAAAACAATTTAAAATATTTTAATAATTATTGAAATTCATGACAGCGTTATACGAAATTCAAATTTGTAAAAAAAAAAAATACATAACAATGTTTTAGATTTTAAATTCTAACAATTAATTGAATTTGTGTTTATTGTTTGATTAGAAATATGAAAGTAACATTTCCAAATTGAGTGTAAAAGCTATTTTAGTACTATAGAAGATCACTCACTTTTTTATATTATATGTTAATACCAATATAGAAATTTGTGATTAATTCATAAGTGATTTTGACGGTGTAAAAATTTGTATATTTAATTCTAAATATAAATTTTAAAAATGTCACAACCATGGGGTCATGATATAATTATGCTATTTTTGTCAAAAAGCATTATTTTTCATAAATGTAACCAATATGACCCCATGTCCAAAAACAACAATAACAACTACTCTACTACTACTTTTTGTTTTTTGTTTTTTTTTTTCCTCTTGTGTGTCTTTGCTATTATTATTATTATTATTTATTTATTTGAATATGACTTTGTAGATTTTTTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTCTATGGTTCAATTTGGGATGCATCATCTTGGGCAACGGAGGAAGGACGAATTAAAGCGGATTATCGATACCAACCTTTTATC</genome_strand>
        <mrna_strand>CTAACACTCACTC-A-ACCAAAGTGCCATTAAAACAAC-TTTTGGA-TTT-TACCCAAACAATTATTATGGAATTTCTTCTTTCTTTACTTCTATTTTTCTTATTCAATGCAAGATTAATCAATGCTCAAGGCCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGTACAATCTTTAGGATTTAACCAAGGTTTTAGGAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTTAAATCTCTAAAAAATTATCGTTCTGGTTATTTTGGGACTTATATTAAGCTACAACCTGGTTTCACTGCTGGAATTATTACTTCTTTCTAT......................................................................................CTTTCAAACAATCAAGATTATCCAGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTGTCGATGATGTCCCAATTAGAAGATACCCTAAGAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTATATGGTTCAATTTGGGATGCATCATCTTGGGCAACGGAAGAAGGACGAATTAAAGCCGATTATNCATATCAACCGTTCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455213" ref_strand="+" ref_description="SGN-E455213 [cSTS-25-L17]">
      <seq>ctcactcaaccaaagtgccattaaaacaacttttggattttacccaaacaattattatggaatttcttctttctttacttctatttttcttattcaatgcaagattaatcaatgctcaaggccccccttcacctggctactatcctagttctagggtacaatctttaggatttaaccaaggttttaggaacctttggggtcctcaacatcaatcattggaccaaagtaccttaactatatggcttgataaaaattcaggaggaagtggttttaaatctctaaaaaattatcgttctggttattttgggacttatattaagctacaacctggtttcactgctggaattattacttctttctatctttcaaacaatcaagattatccagggaaccatgatgaaattgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaatgtgtatataagaggaagtggagatggaaatattattggaagagaaatgaaatttcatctttggtttgatccaacaaaagattatcacaattatgcaatcctttgggaccccaatgagatcatattttttgtcgatgatgtcccaattagaagataccctaagaaaaatgatgcaacatttccacaaagacctatgtatgtatatggttcaatttgggatgcatcatcttgggcaacggaggaaagacgaattaaagccgattatcaatatcaaccgttcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17268" stop="14710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16968" g_stop="16706" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="362" r_length="104" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="15859" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="580" r_length="218" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15858" i_stop="15170" i_length="689">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15169" g_stop="15010" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="740" r_length="160" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E455213" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16968" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15859"/>
          <exon e_start="15169" e_stop="15010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCATGTTAGTATATTTTTTTTAAAAACTTCTTCTTTTTTTTTGCTTATGGTCTATTTTTTTTAGTCTTTTTCATAAATAGTTTAGTGTTAAAAAAATATGTTCAAAAGTAGAAATTTTTTAACGTACAGATACGTTGATAGTGTTACGAATTTCAAACTTAAGCAGTAAAACAATTTAAAATATTTTAATAATTATTGAAATTCATGACAGCGTTATACGAAATTCAAATTTGTAAAAAAAAAAAATACATAACAATGTTTTAGATTTTAAATTCTAACAATTAATTGAATTTGTGTTTATTGTTTGATTAGAAATATGAAAGTAACATTTCCAAATTGAGTGTAAAAGCTATTTTAGTACTATAGAAGATCACTCACTTTTTTATATTATATGTTAATACCAATATAGAAATTTGTGATTAATTCATAAGTGATTTTGACGGTGTAAAAATTTGTATATTTAATTCTAAATATAAATTTTAAAAATGTCACAACCATGGGGTCATGATATAATTATGCTATTTTTGTCAAAAAGCATTATTTTTCATAAATGTAACCAATATGACCCCATGTCCAAAAACAACAATAACAACTACTCTACTACTACTTTTTGTTTTTTGTTTTTTTTTTTCCTCTTGTGTGTCTTTGCTATTATTATTATTATTATTTATTTATTTGAATATGACTTTGTAGATTTTTTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTCTATGGTTCAATTTGGGATGCATCATCTTGGGCAACGGAGGAAGGACGAATTAAAGCGGATTATCGATACCAACCTTTTATC</genome_strand>
        <mrna_strand>CTCACTC-A-ACCAAAGTGCCATTAAAACAACT-TTTGGA-TTT-TACCCAAACAATTATTATGGAATTTCTTCTTTCTTTACTTCTATTTTTCTTATTCAATGCAAGATTAATCAATGCTCAAGGCCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGTACAATCTTTAGGATTTAACCAAGGTTTTAGGAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTTAAATCTCTAAAAAATTATCGTTCTGGTTATTTTGGGACTTATATTAAGCTACAACCTGGTTTCACTGCTGGAATTATTACTTCTTTCTAT......................................................................................CTTTCAAACAATCAAGATTATCCAGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTGTCGATGATGTCCCAATTAGAAGATACCCTAAGAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTATATGGTTCAATTTGGGATGCATCATCTTGGGCAACGGAGGAAAGACGAATTAAAGCCGATTATCAATATCAACCGTTCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585853" ref_strand="+" ref_description="SGN-E585853 [68317]">
      <seq>attaaaacaacttttggattttatccaaacaacttattatggaatttcttctttctttacttctatttttcttattcaatgcaagattaatcaatgctcaaggccccccttcacctggctactatcctagttctagggtacaatctttagngatttaaccaaggttttaggaacctttggggtcctcaacatcaatcattggaccaaagtaccttaactatatggcttgataaaaattcaggaggaagtggttttaaatctctaaaaaattatcgttctggttattttgggacttatattaagctacaacctggtttcactgctggaattattacttctttctatctttcaaacaatcaagattatccagggaaccatgatgaaattgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaatgtgtatataagaggaagtggagatggaaatattattggaagagaaatgaaatttcatctttggtttgatccaacaaaagattatcacaattatgcaatcctttgggaccccaatgagatcatatttttgtcgatgatgtcccaattagaagataccctaagaaaaatgatgcaacatttccagaaagacctatgtatgtatatggttcaatttgggatgcatcatctttgggcaacgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17247" stop="14753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16947" g_stop="16706" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="345" r_length="104" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="15859" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="563" r_length="218" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15858" i_stop="15170" i_length="689">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15169" g_stop="15053" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="680" r_length="117" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E585853" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16947" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15859"/>
          <exon e_start="15169" e_stop="15053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAAACAACTTTTTGGATTTTATATCCAAACAA-TTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAG-GATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCATGTTAGTATATTTTTTTTAAAAACTTCTTCTTTTTTTTTGCTTATGGTCTATTTTTTTTAGTCTTTTTCATAAATAGTTTAGTGTTAAAAAAATATGTTCAAAAGTAGAAATTTTTTAACGTACAGATACGTTGATAGTGTTACGAATTTCAAACTTAAGCAGTAAAACAATTTAAAATATTTTAATAATTATTGAAATTCATGACAGCGTTATACGAAATTCAAATTTGTAAAAAAAAAAAATACATAACAATGTTTTAGATTTTAAATTCTAACAATTAATTGAATTTGTGTTTATTGTTTGATTAGAAATATGAAAGTAACATTTCCAAATTGAGTGTAAAAGCTATTTTAGTACTATAGAAGATCACTCACTTTTTTATATTATATGTTAATACCAATATAGAAATTTGTGATTAATTCATAAGTGATTTTGACGGTGTAAAAATTTGTATATTTAATTCTAAATATAAATTTTAAAAATGTCACAACCATGGGGTCATGATATAATTATGCTATTTTTGTCAAAAAGCATTATTTTTCATAAATGTAACCAATATGACCCCATGTCCAAAAACAACAATAACAACTACTCTACTACTACTTTTTGTTTTTTGTTTTTTTTTTTCCTCTTGTGTGTCTTTGCTATTATTATTATTATTATTTATTTATTTGAATATGACTTTGTAGATTTTTTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTCTATGGTTCAATTTGGGATGCATCATC-TTGGGCAACGGA</genome_strand>
        <mrna_strand>ATTAAAACAAC-TTTTGGATTT--TATCCAAACAACTTATTATGGAATTTCTTCTTTCTTTACTTCTATTTTTCTTATTCAATGCAAGATTAATCAATGCTCAAGGCCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGTACAATCTTTAGNGATTTAACCAAGGTTTTAGGAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTTAAATCTCTAAAAAATTATCGTTCTGGTTATTTTGGGACTTATATTAAGCTACAACCTGGTTTCACTGCTGGAATTATTACTTCTTTCTAT......................................................................................CTTTCAAACAATCAAGATTATCCAGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TTTTTGTCGATGATGTCCCAATTAGAAGATACCCTAAGAAAAATGATGCAACATTTCCAGAAAGACCTATGTATGTATATGGTTCAATTTGGGATGCATCATCTTTGGGCAACGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466907" ref_strand="+" ref_description="SGN-E466907 [cPRO-26-O14]">
      <seq>ctcactcaaccaaagtgccattaaaacaacttttggattttacccaaacaattattatggaatttcttctttctttacttctatttttcttattcaatgcaagattaatcaatgctcaaggccccccttcacctggctactatcctagttctagggtacaatctttaggatttaaccaaggttttaggaacctttggggtcctcaacatcaatcattggaccaaagtaccttaactatatggcttgataaaaattcaggaggaagtggttttaaatctctaaaaaattatcgttctggttattttgggacttatattaagctacaacctggtttcactgctggaattattacttctttctatctttcaaacaatcaagattatccagggaaccatgatgaaattgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaatgtgtatataagaggaagtggagatggaaatattattggaagagaaatgaaatttcatctttggtttgatccaacaaaagattatcacaattatgcaatcctttgggaccccaatgagatcatattttttgtcgatgatgtcccaattagaagataccctaagaaaaatgatgcaacatttccacaaagacctatgtatgtatatggttcaatttgggatgcatcatcttgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17268" stop="14759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16968" g_stop="16706" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="362" r_length="104" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="15859" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="580" r_length="218" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15858" i_stop="15170" i_length="689">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15169" g_stop="15059" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="691" r_length="111" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E466907" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16968" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15859"/>
          <exon e_start="15169" e_stop="15059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCATGTTAGTATATTTTTTTTAAAAACTTCTTCTTTTTTTTTGCTTATGGTCTATTTTTTTTAGTCTTTTTCATAAATAGTTTAGTGTTAAAAAAATATGTTCAAAAGTAGAAATTTTTTAACGTACAGATACGTTGATAGTGTTACGAATTTCAAACTTAAGCAGTAAAACAATTTAAAATATTTTAATAATTATTGAAATTCATGACAGCGTTATACGAAATTCAAATTTGTAAAAAAAAAAAATACATAACAATGTTTTAGATTTTAAATTCTAACAATTAATTGAATTTGTGTTTATTGTTTGATTAGAAATATGAAAGTAACATTTCCAAATTGAGTGTAAAAGCTATTTTAGTACTATAGAAGATCACTCACTTTTTTATATTATATGTTAATACCAATATAGAAATTTGTGATTAATTCATAAGTGATTTTGACGGTGTAAAAATTTGTATATTTAATTCTAAATATAAATTTTAAAAATGTCACAACCATGGGGTCATGATATAATTATGCTATTTTTGTCAAAAAGCATTATTTTTCATAAATGTAACCAATATGACCCCATGTCCAAAAACAACAATAACAACTACTCTACTACTACTTTTTGTTTTTTGTTTTTTTTTTTCCTCTTGTGTGTCTTTGCTATTATTATTATTATTATTTATTTATTTGAATATGACTTTGTAGATTTTTTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTCTATGGTTCAATTTGGGATGCATCATCTTGGGC</genome_strand>
        <mrna_strand>CTCACTC-A-ACCAAAGTGCCATTAAAACAACT-TTTGGA-TTT-TACCCAAACAATTATTATGGAATTTCTTCTTTCTTTACTTCTATTTTTCTTATTCAATGCAAGATTAATCAATGCTCAAGGCCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGTACAATCTTTAGGATTTAACCAAGGTTTTAGGAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTTAAATCTCTAAAAAATTATCGTTCTGGTTATTTTGGGACTTATATTAAGCTACAACCTGGTTTCACTGCTGGAATTATTACTTCTTTCTAT......................................................................................CTTTCAAACAATCAAGATTATCCAGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTGTCGATGATGTCCCAATTAGAAGATACCCTAAGAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTATATGGTTCAATTTGGGATGCATCATCTTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463568" ref_strand="+" ref_description="SGN-E463568 [cPRO-15-G13]">
      <seq>ccaaagtgccattaaaacaacttttggattttacccaaacaattattatggaatttcttctttctttacttctatttttcttattcaatgcaagattaatcaatgctcaaggccccccttcacctggctactatcctagttctagggtacaatctttaggatttaaccaaggttttaggaacctttggggtcctcaacatcaatcattggaccaaagtaccttaactatatggcttgataaaaattcaggaggaagtggttttaaatctctaaaaaattatcgttctggttattttgggacttatattaagctacaacctggtttcactgctggaattattacttctttctatctttcaaacaatcaagattatccagggaaccatgatgaaattgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaatgtgtatataagaggaagtggagatggaaatattattggaagagaaatgaaatttcatctttggtttgatccaacaaaagattatcacaattatgcaatcctttgggaccccaatgagatcatattttttgtcgatgatgtcccaattagaagataccctaagaaaaatgatgcaacatttccacaaagacctatgtatgtatatggntcaatttgggatgcatcatcttgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17257" stop="14759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16957" g_stop="16706" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="353" r_length="104" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="15859" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="571" r_length="218" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15858" i_stop="15170" i_length="689">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15169" g_stop="15059" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="682" r_length="111" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E463568" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16957" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15859"/>
          <exon e_start="15169" e_stop="15059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCATGTTAGTATATTTTTTTTAAAAACTTCTTCTTTTTTTTTGCTTATGGTCTATTTTTTTTAGTCTTTTTCATAAATAGTTTAGTGTTAAAAAAATATGTTCAAAAGTAGAAATTTTTTAACGTACAGATACGTTGATAGTGTTACGAATTTCAAACTTAAGCAGTAAAACAATTTAAAATATTTTAATAATTATTGAAATTCATGACAGCGTTATACGAAATTCAAATTTGTAAAAAAAAAAAATACATAACAATGTTTTAGATTTTAAATTCTAACAATTAATTGAATTTGTGTTTATTGTTTGATTAGAAATATGAAAGTAACATTTCCAAATTGAGTGTAAAAGCTATTTTAGTACTATAGAAGATCACTCACTTTTTTATATTATATGTTAATACCAATATAGAAATTTGTGATTAATTCATAAGTGATTTTGACGGTGTAAAAATTTGTATATTTAATTCTAAATATAAATTTTAAAAATGTCACAACCATGGGGTCATGATATAATTATGCTATTTTTGTCAAAAAGCATTATTTTTCATAAATGTAACCAATATGACCCCATGTCCAAAAACAACAATAACAACTACTCTACTACTACTTTTTGTTTTTTGTTTTTTTTTTTCCTCTTGTGTGTCTTTGCTATTATTATTATTATTATTTATTTATTTGAATATGACTTTGTAGATTTTTTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTCTATGGTTCAATTTGGGATGCATCATCTTGGGC</genome_strand>
        <mrna_strand>CCAAAGTGCCATTAAAACAAC-TTTTGGA-TTT-TACCCAAACAATTATTATGGAATTTCTTCTTTCTTTACTTCTATTTTTCTTATTCAATGCAAGATTAATCAATGCTCAAGGCCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGTACAATCTTTAGGATTTAACCAAGGTTTTAGGAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTTAAATCTCTAAAAAATTATCGTTCTGGTTATTTTGGGACTTATATTAAGCTACAACCTGGTTTCACTGCTGGAATTATTACTTCTTTCTAT......................................................................................CTTTCAAACAATCAAGATTATCCAGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTGTCGATGATGTCCCAATTAGAAGATACCCTAAGAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTATATGGNTCAATTTGGGATGCATCATCTTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455773" ref_strand="+" ref_description="SGN-E455773 [cSTS-27-E8]">
      <seq>ggtacaaatctttaggacttaaccaaggttttaggaacctttggggtcctcaacatcaatcattggaccaaagtaccttaactatatggcttgataaaaattcaggaggaagtggttttaaatctctaaaaaattatcgttctggttattttgggaacttatattaagctacaacctggtttcactgctggaattattacttctttctatctttcaaacaatcaagattatccagggaaccatgatgaaattgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaatgtgtatataagaagaagtggagatggaaatattattggaagagaaatgaaatttcatctttggtttgatccaacaaaagattatcacaattatgcaatcctttgggaccccaatgagatcatattttttgtcgatgatgtcccaattagaagataccctaagaaaaatgatgcaacatttccacaaagacctatgtatgtatatggttcaattttggatgcatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17109" stop="14765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16809" g_stop="16706" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="210" r_length="105" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="15859" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="428" r_length="218" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15858" i_stop="15170" i_length="689">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15169" g_stop="15065" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="533" r_length="105" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E455773" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16809" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15859"/>
          <exon e_start="15169" e_stop="15065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAC-AATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGG-AGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCATGTTAGTATATTTTTTTTAAAAACTTCTTCTTTTTTTTTGCTTATGGTCTATTTTTTTTAGTCTTTTTCATAAATAGTTTAGTGTTAAAAAAATATGTTCAAAAGTAGAAATTTTTTAACGTACAGATACGTTGATAGTGTTACGAATTTCAAACTTAAGCAGTAAAACAATTTAAAATATTTTAATAATTATTGAAATTCATGACAGCGTTATACGAAATTCAAATTTGTAAAAAAAAAAAATACATAACAATGTTTTAGATTTTAAATTCTAACAATTAATTGAATTTGTGTTTATTGTTTGATTAGAAATATGAAAGTAACATTTCCAAATTGAGTGTAAAAGCTATTTTAGTACTATAGAAGATCACTCACTTTTTTATATTATATGTTAATACCAATATAGAAATTTGTGATTAATTCATAAGTGATTTTGACGGTGTAAAAATTTGTATATTTAATTCTAAATATAAATTTTAAAAATGTCACAACCATGGGGTCATGATATAATTATGCTATTTTTGTCAAAAAGCATTATTTTTCATAAATGTAACCAATATGACCCCATGTCCAAAAACAACAATAACAACTACTCTACTACTACTTTTTGTTTTTTGTTTTTTTTTTTCCTCTTGTGTGTCTTTGCTATTATTATTATTATTATTTATTTATTTGAATATGACTTTGTAGATTTTTTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTCTATGGTTCAATTTGGGATGCATCATC</genome_strand>
        <mrna_strand>GGTACAAATCTTTAGGACTTAACCAAGGTTTTAGGAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTTAAATCTCTAAAAAATTATCGTTCTGGTTATTTTGGGAACTTATATTAAGCTACAACCTGGTTTCACTGCTGGAATTATTACTTCTTTCTAT......................................................................................CTTTCAAACAATCAAGATTATCCAGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAAGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTGTCGATGATGTCCCAATTAGAAGATACCCTAAGAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTATATGGTTCAATTTTGGATGCATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580983" ref_strand="+" ref_description="SGN-E580983 [6226]">
      <seq>ttttaaatctctaaaaaattatcgttctggttattttgggacttatattaagctacaacctggtttcactgctggaattattacttctttctatctttcaaacaatcaagattatccattgtaaccatgatgaaattgatattgaatttcttgggaacaacaccaaacaagccatatactttacaaacaaatgtgtatataagaggaagtggagatggaaatattattggaagagaaatgaaatttcatctttggtttgatccagcaagagattatcacaattatgcaatcctttgggaccccaatgagatcatattttttgtcgatgatgtcccaattagaagataccctaggaaaaatgatgcacatttccagaaagacctatgtatgtatatggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="16556" stop="14784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16256" g_stop="16163" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16076" g_stop="15859" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="314" r_length="220" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15858" i_stop="15170" i_length="689">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15169" g_stop="15084" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="399" r_length="85" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E580983" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E580983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16256" e_stop="16163"/>
          <exon e_start="16076" e_stop="15859"/>
          <exon e_start="15169" e_stop="15084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCC-GGGGAACCATGATGAAATTGATATTGAATTTCTT-GGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCATGTTAGTATATTTTTTTTAAAAACTTCTTCTTTTTTTTTGCTTATGGTCTATTTTTTTTAGTCTTTTTCATAAATAGTTTAGTGTTAAAAAAATATGTTCAAAAGTAGAAATTTTTTAACGTACAGATACGTTGATAGTGTTACGAATTTCAAACTTAAGCAGTAAAACAATTTAAAATATTTTAATAATTATTGAAATTCATGACAGCGTTATACGAAATTCAAATTTGTAAAAAAAAAAAATACATAACAATGTTTTAGATTTTAAATTCTAACAATTAATTGAATTTGTGTTTATTGTTTGATTAGAAATATGAAAGTAACATTTCCAAATTGAGTGTAAAAGCTATTTTAGTACTATAGAAGATCACTCACTTTTTTATATTATATGTTAATACCAATATAGAAATTTGTGATTAATTCATAAGTGATTTTGACGGTGTAAAAATTTGTATATTTAATTCTAAATATAAATTTTAAAAATGTCACAACCATGGGGTCATGATATAATTATGCTATTTTTGTCAAAAAGCATTATTTTTCATAAATGTAACCAATATGACCCCATGTCCAAAAACAACAATAACAACTACTCTACTACTACTTTTTGTTTTTTGTTTTTTTTTTTCCTCTTGTGTGTCTTTGCTATTATTATTATTATTATTTATTTATTTGAATATGACTTTGTAGATTTTTTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTCTATGGTT</genome_strand>
        <mrna_strand>TTTTAAATCTCTAAAAAATTATCGTTCTGGTTATTTTGGGACTTATATTAAGCTACAACCTGGTTTCACTGCTGGAATTATTACTTCTTTCTAT......................................................................................CTTTCAAACAATCAAGATTATCCATTGTAACCATGATGAAATTGATATTGAATTTCTTGGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAGCAAGAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTGTCGATGATGTCCCAATTAGAAGATACCCTAGGAAAAATGATGC-ACATTTCCAGAAAGACCTATGTATGTATATGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461905" ref_strand="+" ref_description="SGN-E461905 [cPRO-9-P14]">
      <seq>attaaaacaacttttggattttacccaaacaattattatggaatttcttctttctttacttctatttttcttattcaatgcaagattaatcaatgctcaaggccccccttcacctggctactatcctagttctagggtacaatctttaggatttaaccaaggttttaggaacctttggggtcctcaacatcaatcattggaccaaagtaccttaactatatggcttgataaaaattcaggaggaagtggttttaaatctctaaaaaattatcgttctggttattttgggacttatattaagctacaacctggtttcactgctggaattattacttctttctatctttcaaacaatcaagattatccagggaaccatgatgaaattgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaatgtgtatataagaggaagtggagatggaaatattattggaagagaaatgaaatttcatctttggtttgatccaacaaaagattatcacaattatgcaatcctttgggaacccaatgagatcatatttttttgtcgatgatgtccccaatagaagataccctaagaaaaatgatgcaacattttcacaaagacctatgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17247" stop="14794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16947" g_stop="16706" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="343" r_length="104" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="15859" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="561" r_length="218" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15858" i_stop="15170" i_length="689">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15169" g_stop="15094" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="638" r_length="77" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E461905" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16947" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15859"/>
          <exon e_start="15169" e_stop="15094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCATGTTAGTATATTTTTTTTAAAAACTTCTTCTTTTTTTTTGCTTATGGTCTATTTTTTTTAGTCTTTTTCATAAATAGTTTAGTGTTAAAAAAATATGTTCAAAAGTAGAAATTTTTTAACGTACAGATACGTTGATAGTGTTACGAATTTCAAACTTAAGCAGTAAAACAATTTAAAATATTTTAATAATTATTGAAATTCATGACAGCGTTATACGAAATTCAAATTTGTAAAAAAAAAAAATACATAACAATGTTTTAGATTTTAAATTCTAACAATTAATTGAATTTGTGTTTATTGTTTGATTAGAAATATGAAAGTAACATTTCCAAATTGAGTGTAAAAGCTATTTTAGTACTATAGAAGATCACTCACTTTTTTATATTATATGTTAATACCAATATAGAAATTTGTGATTAATTCATAAGTGATTTTGACGGTGTAAAAATTTGTATATTTAATTCTAAATATAAATTTTAAAAATGTCACAACCATGGGGTCATGATATAATTATGCTATTTTTGTCAAAAAGCATTATTTTTCATAAATGTAACCAATATGACCCCATGTCCAAAAACAACAATAACAACTACTCTACTACTACTTTTTGTTTTTTGTTTTTTTTTTTCCTCTTGTGTGTCTTTGCTATTATTATTATTATTATTTATTTATTTGAATATGACTTTGTAGA-TTTTTTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACATTTCCACAAAGACCTATGTAT</genome_strand>
        <mrna_strand>ATTAAAACAAC-TTTTGGATTT--TACCCAAACAATTATTATGGAATTTCTTCTTTCTTTACTTCTATTTTTCTTATTCAATGCAAGATTAATCAATGCTCAAGGCCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGTACAATCTTTAGGATTTAACCAAGGTTTTAGGAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTTAAATCTCTAAAAAATTATCGTTCTGGTTATTTTGGGACTTATATTAAGCTACAACCTGGTTTCACTGCTGGAATTATTACTTCTTTCTAT......................................................................................CTTTCAAACAATCAAGATTATCCAGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGAACCCAATGAGATCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTTGTCGATGATGTCCCCAATAGAAGATACCCTAAGAAAAATGATGCAACATTTTCACAAAGACCTATGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430633" ref_strand="+" ref_description="SGN-E430633 [STM-54-A11]">
      <seq>ctaacactcactcaaccaaagtgccattaaaacaacttttggtattttacccaaacaattattatggaatttcttctttctttacttctatttttcttattcaatgcaagattaatcaatgctcaaggccccccttcacctggctactatcctagttctagggtacaatctttaggatttaaccaaggttttaggaacctttggggtcctcaacatcaatcattggaccaaagtaccttaactatatggcttgataaaaattcaggaggaagtggttttaaatctctaaaaaattatcgttctggttattttgggacttatattaagctacaacctggtttcactgctggaattattacttctttctatctttcaaacaatcaagattatccagggaaccatgatgaaattgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaatgtgtatataagaggaagtggagatggaaatattattggaagagaaatgaaatttcatctttggtttgatccaacaaaagattatcacaattatgcaatcctttgggaccccaatgagatcatattttttgtcgatgatgtcccaattagaagataccctaagaaaaatgatgcaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17274" stop="14813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16974" g_stop="16706" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="369" r_length="104" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="15859" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="587" r_length="218" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15858" i_stop="15170" i_length="689">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15169" g_stop="15113" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="644" r_length="57" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E430633" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16974" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15859"/>
          <exon e_start="15169" e_stop="15113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACACTCACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCATGTTAGTATATTTTTTTTAAAAACTTCTTCTTTTTTTTTGCTTATGGTCTATTTTTTTTAGTCTTTTTCATAAATAGTTTAGTGTTAAAAAAATATGTTCAAAAGTAGAAATTTTTTAACGTACAGATACGTTGATAGTGTTACGAATTTCAAACTTAAGCAGTAAAACAATTTAAAATATTTTAATAATTATTGAAATTCATGACAGCGTTATACGAAATTCAAATTTGTAAAAAAAAAAAATACATAACAATGTTTTAGATTTTAAATTCTAACAATTAATTGAATTTGTGTTTATTGTTTGATTAGAAATATGAAAGTAACATTTCCAAATTGAGTGTAAAAGCTATTTTAGTACTATAGAAGATCACTCACTTTTTTATATTATATGTTAATACCAATATAGAAATTTGTGATTAATTCATAAGTGATTTTGACGGTGTAAAAATTTGTATATTTAATTCTAAATATAAATTTTAAAAATGTCACAACCATGGGGTCATGATATAATTATGCTATTTTTGTCAAAAAGCATTATTTTTCATAAATGTAACCAATATGACCCCATGTCCAAAAACAACAATAACAACTACTCTACTACTACTTTTTGTTTTTTGTTTTTTTTTTTCCTCTTGTGTGTCTTTGCTATTATTATTATTATTATTTATTTATTTGAATATGACTTTGTAGATTTTTTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACATT</genome_strand>
        <mrna_strand>CTAACACTCACTC-A-ACCAAAGTGCCATTAAAACAAC-TTTTGG-TATTTTACCCAAACAATTATTATGGAATTTCTTCTTTCTTTACTTCTATTTTTCTTATTCAATGCAAGATTAATCAATGCTCAAGGCCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGTACAATCTTTAGGATTTAACCAAGGTTTTAGGAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTTAAATCTCTAAAAAATTATCGTTCTGGTTATTTTGGGACTTATATTAAGCTACAACCTGGTTTCACTGCTGGAATTATTACTTCTTTCTAT......................................................................................CTTTCAAACAATCAAGATTATCCAGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTGTCGATGATGTCCCAATTAGAAGATACCCTAAGAAAAATGATGCAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301919" ref_strand="+" ref_description="SGN-E301919 [cLEW-25-L24]">
      <seq>tcacttaacaccaaagtaccattaaaacaactttttggattttatatccaaacaattattatggaattccttctttatttacttttatttttcttactcaattcaagattaatcaattctcaaggtcccccttcacctggctactatcctagttctagggcacaatctataggatttaaccaaggttttagaaacctttggggtcctcaacatcaatcattggaccaaagtaccttaactatatggcttgataaaaattcaggaggaagtggttttaaatctctaaagaattatcgttccggttattttgggagtagtattaagctacaacctggttttactgctggaattattacttctttttatctttcaaataatcaagattatccggggaaccatgatgaaattgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaatgtgtatataagaggaagtggagatggaaatattattggaagagaaatgaaatttcatctttggtttgatccaacaaaagattatcacaattatgcaatcctttgggaccccaatgagatcatattttttgtcgatgatgtccctattagaagataccctaaaaaaaatgatgcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17267" stop="14815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16967" g_stop="16706" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="366" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="15859" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="584" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15858" i_stop="15170" i_length="689">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15169" g_stop="15115" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="639" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E301919" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16967" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15859"/>
          <exon e_start="15169" e_stop="15115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCATGTTAGTATATTTTTTTTAAAAACTTCTTCTTTTTTTTTGCTTATGGTCTATTTTTTTTAGTCTTTTTCATAAATAGTTTAGTGTTAAAAAAATATGTTCAAAAGTAGAAATTTTTTAACGTACAGATACGTTGATAGTGTTACGAATTTCAAACTTAAGCAGTAAAACAATTTAAAATATTTTAATAATTATTGAAATTCATGACAGCGTTATACGAAATTCAAATTTGTAAAAAAAAAAAATACATAACAATGTTTTAGATTTTAAATTCTAACAATTAATTGAATTTGTGTTTATTGTTTGATTAGAAATATGAAAGTAACATTTCCAAATTGAGTGTAAAAGCTATTTTAGTACTATAGAAGATCACTCACTTTTTTATATTATATGTTAATACCAATATAGAAATTTGTGATTAATTCATAAGTGATTTTGACGGTGTAAAAATTTGTATATTTAATTCTAAATATAAATTTTAAAAATGTCACAACCATGGGGTCATGATATAATTATGCTATTTTTGTCAAAAAGCATTATTTTTCATAAATGTAACCAATATGACCCCATGTCCAAAAACAACAATAACAACTACTCTACTACTACTTTTTGTTTTTTGTTTTTTTTTTTCCTCTTGTGTGTCTTTGCTATTATTATTATTATTATTTATTTATTTGAATATGACTTTGTAGATTTTTTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACA</genome_strand>
        <mrna_strand>TCACTTAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATTCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCCGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTAT......................................................................................CTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309185" ref_strand="+" ref_description="SGN-E309185 [cLEZ-12-K9]">
      <seq>aacaccaaagtaccattaaaacaactttttggattttatatccaaacaattattatggaattccttctttatttacttttatttttcttactcaattcaagattaatcaattctcaaggtcccccttcacctggctactatcctagttctagggcacaatctataggatttaaccaaggttttagaaacctttggggtcctcaacatcaatcattggaccaaagtaccttaactatatggcttgataaaaattcaggaggaagtggttttaaatctctaaagaattatcgttccggttattttgggagtagtattaagctacaacctggttttactgctggaattattacttctttttatctttcaaataatcaagattatccggggaaccatgatgaaattgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaatggtatataagaggaagtggagatggaaatattattggaagagaaatgaaatttcatctttggtttgatccaacaaaagattatcacaattatgcaatcctttgggaccccaatgagatcatattttttgtcgatgatgtccctattagaagataccctaaaaaaaatgatgcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17261" stop="14815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16961" g_stop="16706" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="360" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="15859" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="577" r_length="217" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15858" i_stop="15170" i_length="689">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15169" g_stop="15115" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="632" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E309185" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16961" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15859"/>
          <exon e_start="15169" e_stop="15115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCATGTTAGTATATTTTTTTTAAAAACTTCTTCTTTTTTTTTGCTTATGGTCTATTTTTTTTAGTCTTTTTCATAAATAGTTTAGTGTTAAAAAAATATGTTCAAAAGTAGAAATTTTTTAACGTACAGATACGTTGATAGTGTTACGAATTTCAAACTTAAGCAGTAAAACAATTTAAAATATTTTAATAATTATTGAAATTCATGACAGCGTTATACGAAATTCAAATTTGTAAAAAAAAAAAATACATAACAATGTTTTAGATTTTAAATTCTAACAATTAATTGAATTTGTGTTTATTGTTTGATTAGAAATATGAAAGTAACATTTCCAAATTGAGTGTAAAAGCTATTTTAGTACTATAGAAGATCACTCACTTTTTTATATTATATGTTAATACCAATATAGAAATTTGTGATTAATTCATAAGTGATTTTGACGGTGTAAAAATTTGTATATTTAATTCTAAATATAAATTTTAAAAATGTCACAACCATGGGGTCATGATATAATTATGCTATTTTTGTCAAAAAGCATTATTTTTCATAAATGTAACCAATATGACCCCATGTCCAAAAACAACAATAACAACTACTCTACTACTACTTTTTGTTTTTTGTTTTTTTTTTTCCTCTTGTGTGTCTTTGCTATTATTATTATTATTATTTATTTATTTGAATATGACTTTGTAGATTTTTTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACA</genome_strand>
        <mrna_strand>AACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATTCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCCGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTAT......................................................................................CTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATG-GTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585866" ref_strand="+" ref_description="SGN-E585866 [68331]">
      <seq>ccttaactatatggcttgataaatattcaggaggaagtggttttaaatctctaatcaattatcgtgctggttattgtgggactcatattaagctacaacctggtttcactgctggaattattacttcttactatctttcaaacaatcaagattatccagggaaccatgatgaaattgatattgaatttcttggaacaaaaccaaacaagccatatactttacaaacaaatgtgtatataagaggaagtggagatggaaatattattggaagagaaatgaaatttcatctttggtttgatccaacaaacgattatcacaattatgcaatcctttgggaccccaatgagatcatatgacttgtcgatgatgtcccaattagaacataccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17035" stop="14833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16735" g_stop="16706" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="134" r_length="104" r_score="0.904"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="15859" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="352" r_length="218" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15858" i_stop="15170" i_length="689">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15169" g_stop="15133" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="389" r_length="37" r_score="0.865"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E585866" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16735" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15859"/>
          <exon e_start="15169" e_stop="15133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCATGTTAGTATATTTTTTTTAAAAACTTCTTCTTTTTTTTTGCTTATGGTCTATTTTTTTTAGTCTTTTTCATAAATAGTTTAGTGTTAAAAAAATATGTTCAAAAGTAGAAATTTTTTAACGTACAGATACGTTGATAGTGTTACGAATTTCAAACTTAAGCAGTAAAACAATTTAAAATATTTTAATAATTATTGAAATTCATGACAGCGTTATACGAAATTCAAATTTGTAAAAAAAAAAAATACATAACAATGTTTTAGATTTTAAATTCTAACAATTAATTGAATTTGTGTTTATTGTTTGATTAGAAATATGAAAGTAACATTTCCAAATTGAGTGTAAAAGCTATTTTAGTACTATAGAAGATCACTCACTTTTTTATATTATATGTTAATACCAATATAGAAATTTGTGATTAATTCATAAGTGATTTTGACGGTGTAAAAATTTGTATATTTAATTCTAAATATAAATTTTAAAAATGTCACAACCATGGGGTCATGATATAATTATGCTATTTTTGTCAAAAAGCATTATTTTTCATAAATGTAACCAATATGACCCCATGTCCAAAAACAACAATAACAACTACTCTACTACTACTTTTTGTTTTTTGTTTTTTTTTTTCCTCTTGTGTGTCTTTGCTATTATTATTATTATTATTTATTTATTTGAATATGACTTTGTAGATTTTTTGTCGATGATGTCCCTATTAGAAGATACCCT</genome_strand>
        <mrna_strand>CCTTAACTATATGGCTTGATAAATATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTTAAATCTCTAATCAATTATCGTGCTGGTTATTGTGGGACTCATATTAAGCTACAACCTGGTTTCACTGCTGGAATTATTACTTCTTACTAT......................................................................................CTTTCAAACAATCAAGATTATCCAGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAAAACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAACGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACTTGTCGATGATGTCCCAATTAGAACATACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430565" ref_strand="+" ref_description="SGN-E430565 [STM-53-J24]">
      <seq>ctaacactcactcaaccaaagtgccattaaaacaacttttggattttacccaaacaattattatggaatttcttctttctttacttctatttttcttattcaatgcaagattaatcaatgctcaaggccccccttcacctggctactatcctagttctagggtacaatctttaggatttaaccaaggttttaggaacctttggggtcctcaacatcaatcattggaccaaagtaccttaactatatggcttgataaaaattcaggaggaagtggttttaaatctctaaaaaattatcgttctggttattttgggacttatattaagctacaacctggtttcactgctggaattattacttctttctatctttcaaacaatcaagattatccagggaaccatgatgaaattgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaatgtgtatataagaggaagtggagatggaaatattattggaagagaaatgaaatttcatctttggtttgatccaacaaaagattatcacaattatgcaatcctttgggaccccaatgagatcatatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17274" stop="15556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16974" g_stop="16706" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="368" r_length="104" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="15859" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="586" r_length="218" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E430565" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16974" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACACTCACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCAT</genome_strand>
        <mrna_strand>CTAACACTCACTC-A-ACCAAAGTGCCATTAAAACAAC-TTTTGGA-TTT-TACCCAAACAATTATTATGGAATTTCTTCTTTCTTTACTTCTATTTTTCTTATTCAATGCAAGATTAATCAATGCTCAAGGCCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGTACAATCTTTAGGATTTAACCAAGGTTTTAGGAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTTAAATCTCTAAAAAATTATCGTTCTGGTTATTTTGGGACTTATATTAAGCTACAACCTGGTTTCACTGCTGGAATTATTACTTCTTTCTAT......................................................................................CTTTCAAACAATCAAGATTATCCAGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E594697" ref_strand="+" ref_description="SGN-E594697 [37955]">
      <seq>actcactcaaccaaagtgccattaaaacaacttttggattttatccaaacaattattatggaatttcttctttctttacttctatttttcttattcaatgcaagattaatcaatgctcaaggccccccttcacctggctactatcctagttctagggtacaatctttaggatttaaccaaggttttaggaacctttggggtcctcaacatcaatcattggaccaaagtaccttaactatatggcttgataaaaattcaggaggaagtggttttaaatctctaaaaaattatcgttctggttattttgggacttatattaagctacaacctggtttcactgctggaattattacttctttctatctttcaaacaatcaagattatccagggaaccatgatgaaattgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaatgtgtatataagaggaagtggagatggaaatatcattggaagagaaatgacatctcatctttggtttgatccaacaaaagattatcaccattatgcaatcctttgggacccaatgagatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17269" stop="15559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16969" g_stop="16706" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="363" r_length="104" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="15859" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="580" r_length="217" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E594697" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E594697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16969" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCAT</genome_strand>
        <mrna_strand>ACTCACTC-A-ACCAAAGTGCCATTAAAACAAC-TTTTGGA-TTT-TATCCAAACAATTATTATGGAATTTCTTCTTTCTTTACTTCTATTTTTCTTATTCAATGCAAGATTAATCAATGCTCAAGGCCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGTACAATCTTTAGGATTTAACCAAGGTTTTAGGAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTTAAATCTCTAAAAAATTATCGTTCTGGTTATTTTGGGACTTATATTAAGCTACAACCTGGTTTCACTGCTGGAATTATTACTTCTTTCTAT......................................................................................CTTTCAAACAATCAAGATTATCCAGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATCATTGGAAGAGAAATGACATCTCATCTTTGGTTTGATCCAACAAAAGATTATCACCATTATGCAATCCTTTGGGA-CCCAATGAGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310176" ref_strand="+" ref_description="SGN-E310176 [cLEZ-8-I18]">
      <seq>tcactcaacaccaaagtaccattaaaacaactttttggattttatatccaaacaattattatggaattccttctttatttacttttatttttcttactcaattcaagattaatcaattctcaaggtcccccttcacctggctactatcctagttctagggcacaatctataggatttaaccaaggttttagaaacctttggggtcctcaacatcaatcattggaccaaagtaccttaactatatggcttgataaaaattcaggaggaagtggttttaaatctctaaagaattatcgttccggttattttgggagtagtattaagctacaacctggttttactgctggaattattacttctttttatctttcaaataatcaagattatccggggaaccatgatgaaattgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaatgtgtatataagaggaagtggagatggaaatattattggaagagaaatgaaatttcatctttggtttgatccaacaaaagattatcacaattatgcaatcctttgggaccccaatgagatcatattttttgtcgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17267" stop="15549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16967" g_stop="16706" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="366" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="15859" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="584" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E310176" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16967" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCAT</genome_strand>
        <mrna_strand>TCACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATTCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCCGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTAT......................................................................................CTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E565343" ref_strand="+" ref_description="SGN-E565343 [3784]">
      <seq>ctaacactcactcaaccaaagtgccattaaaacaacttttggatttcatccaaacaattattatggaagtttcttctttctttacttctatttttcttattcaatgcaagattaatcaatgctcaaggccccccttcacctggctactatcctagttctagggtacaatctttaggatttaaccanagttttaggaacctttggggtcctcaacatcaatcattggaccaaagtaccttaactatatggcttgataaaaattcaggaggaagtggttttaaatctctaaaaaattatcgttctggttattttgggacttatattaagctacaacctggtttcactgctggaattattacttctttctatctttcaaacaatcaagattatccagggaaccatgatgaaattgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaatgtgtatatcagaggaagtggagatggaaatattattggaagagaaatgaaatttcatctttggtttgatccaacaaaagattatcacaattatgcaatcctttgggacccccatgagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17274" stop="15561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16974" g_stop="16706" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="369" r_length="104" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="15861" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="585" r_length="216" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E565343" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E565343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16974" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACACTCACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAA-TTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATC</genome_strand>
        <mrna_strand>CTAACACTCACTC-A-ACCAAAGTGCCATTAAAACAAC-TTTTGGA-TTT-CATCCAAACAATTATTATGGAAGTTTCTTCTTTCTTTACTTCTATTTTTCTTATTCAATGCAAGATTAATCAATGCTCAAGGCCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGTACAATCTTTAGGATTTAACCANAGTTTTAGGAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTTAAATCTCTAAAAAATTATCGTTCTGGTTATTTTGGGACTTATATTAAGCTACAACCTGGTTTCACTGCTGGAATTATTACTTCTTTCTAT......................................................................................CTTTCAAACAATCAAGATTATCCAGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATCAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCCATGAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308172" ref_strand="+" ref_description="SGN-E308172 [cLEY-14-B1]">
      <seq>tttttggattttatatccaaacaattattatggaattccttctttatttacttttatttttcttactcaattcaagattaatcaattctcaaggtcccccttcacctggctactatcctagttctagggcacaatctataggatttaaccaaggttttagaaacctttggggtcctcaacatcaatcattggaccaaagtaccttaactatatggcttgataaaaattcaggaggaagtggttttaaatctctaaagaattatcgttccggttattttgggagtagtattaagctacaacctggttttactgctggaattattacttctttttatctttcaaataatcaagattatccggggaaccatgatgaaattgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaatgtgtatataagaggaagtggagatggaaatattattggaagagaaatgaaatttcatctttggtttgatccaacaaaagattatcacaattatgcaatcctttgggaccccaatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17236" stop="15564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16936" g_stop="16706" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="335" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="15864" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="548" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E308172" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16936" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAG</genome_strand>
        <mrna_strand>TTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATTCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCCGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTAT......................................................................................CTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E565706" ref_strand="+" ref_description="SGN-E565706 [4145]">
      <seq>ctaacactcactcaaccaaagtgccattaaaacaacttttggattttatccaaacaattattatggaatttcttcctttctttacttctatttttcttattcaatgcaagattaatcaatgctcaaggccccccttcacctggctactatcctagttctagggtacaatctttaggatttaaccaaggttttaggaacctttggggtcctcaacatcaatcattggaccaaagtaccttaactatatggcttgataaaaattcaggaggaagtggttttaaatctctaaaaaattatcgttctggttattttgggacttatattaagctacaacctggtttcactgctggaattattacttctttctatctttcaaacaatcaagattatccagggaaccatgatgaaattgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaatgtgtatataagaggaagtggagatggaacgtattattggacagagaaatgcaaatttcatctttggtttgatccaacaaaagattatcacaattatgcaatcctttgggaacccaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17274" stop="15566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16974" g_stop="16706" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="369" r_length="104" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="15866" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="583" r_length="214" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E565706" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E565706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16974" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACACTCACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTT-CTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAA-ATATTATTGGA-AGAGAAATG-AAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATG</genome_strand>
        <mrna_strand>CTAACACTCACTC-A-ACCAAAGTGCCATTAAAACAAC-TTTTGGA-TTT-TATCCAAACAATTATTATGGAATTTCTTCCTTTCTTTACTTCTATTTTTCTTATTCAATGCAAGATTAATCAATGCTCAAGGCCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGTACAATCTTTAGGATTTAACCAAGGTTTTAGGAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTTAAATCTCTAAAAAATTATCGTTCTGGTTATTTTGGGACTTATATTAAGCTACAACCTGGTTTCACTGCTGGAATTATTACTTCTTTCTAT......................................................................................CTTTCAAACAATCAAGATTATCCAGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAACGTATTATTGGACAGAGAAATGCAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGAACCCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478385" ref_strand="+" ref_description="SGN-E478385 [cSTD-4-D15]">
      <seq>ctcactcaaccaaagtgccattaaaacaacttttggattttacccaaacaattattatggaatttcttctttctttacttctatttttcttattcaatgcaagattaatcaatgctcaaggccccccttcacctggctactatcctagttctagggtacaatctttaggatttaaccaaggttttaggaacctttggggtcctcaacatcaatcattggaccaaagtaccttaactatatggcttgataaaaattcaggaggaagtggttttaaatctctaaaaaattatcgttctggttattttgggacttatattaagctacaacctggtttcactgctggaattattacttctttctatctttcaaacaatcaagattatccagggaaccatgatgaaattgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaatgtgtatataagaggaagtggagatggaaatattattggaagagaaatgaaatttcatctttggtttgatccaacaaaagattatcacaattatgcaatcctttgggaccccaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17268" stop="15566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16968" g_stop="16706" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="362" r_length="104" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="15866" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="573" r_length="211" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E478385" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16968" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATG</genome_strand>
        <mrna_strand>CTCACTC-A-ACCAAAGTGCCATTAAAACAACT-TTTGGA-TTT-TACCCAAACAATTATTATGGAATTTCTTCTTTCTTTACTTCTATTTTTCTTATTCAATGCAAGATTAATCAATGCTCAAGGCCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGTACAATCTTTAGGATTTAACCAAGGTTTTAGGAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTTAAATCTCTAAAAAATTATCGTTCTGGTTATTTTGGGACTTATATTAAGCTACAACCTGGTTTCACTGCTGGAATTATTACTTCTTTCTAT......................................................................................CTTTCAAACAATCAAGATTATCCAGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310863" ref_strand="+" ref_description="SGN-E310863 [cLEZ-15-J15]">
      <seq>taacacttactcaacaccaaagtaccattaaaacaactttttggattttatatccaaacaattattatggaattccttctttatttacttttatttttcttactcaattcaagattaatcaattctcaaggtcccccttcacctggctactatcctagttctagggcacaatctataggatttaaccaaggttttagaaacctttggggtcctcaacatcaatcattggaccaaagtaccttaactatatggcttgataaaaattcaggaggaagtggttttaaatctctaaagaattatcgttccggttattttgggagtagtattaagctacaacctggttttactgctggaattattacttctttttatctttcaaataatcaagattatccggggaaccatgatgaaattgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaatgtgtgtataagaggaagtggagatggaaatattattggaagagaaatgaaatttcatctttggtttgatccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17273" stop="15608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16973" g_stop="16706" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="372" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="15908" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="541" r_length="169" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E310863" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16973" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACACTCACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAA</genome_strand>
        <mrna_strand>TAACACTTACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATTCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCCGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTAT......................................................................................CTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTGTATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266805" ref_strand="+" ref_description="SGN-E266805 [cLEI-7-B5]">
      <seq>tggattttatatccaaacaattattatggaattccttctttatttacttttatttttcttactcaattcaagattaatcaattctcaaggtcccccttcacctggctactatcctagttctagggcacaatctataggatttaaccaaggttttagaaacctttggggtcctcaacatcaatcattggaccaaagtaccttaactatatggcttgataaaaattcaggaggaagtggttttaaatctctaaagaattatcgttccggttattttgggagtagtattaagctacaaacctgttttactgctggaattattacttctttttatctttcaaataatcaagattatccggggaaccatgatgaaattgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaatgtgtatataagaggaagtggagatggaaatattattggaagagaaatgaaatttcatctttggtttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17232" stop="15613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16932" g_stop="16706" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="331" r_length="104" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="15913" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="495" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E266805" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16932" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGA</genome_strand>
        <mrna_strand>TGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATTCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCCGGTTATTTTGGGAGTAGTATTAAGCTACAAACCTGTTTTACTGCTGGAATTATTACTTCTTTTTAT......................................................................................CTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308698" ref_strand="+" ref_description="SGN-E308698 [cLEZ-13-O21]">
      <seq>actcaacaccaaagtaccattaaaacaactttttggattttatatccaaacaattattatggaattccttctttatttacttttatttttcttactcaattcaagattaatcaattctcaaggtcccccttcacctggctactatcctagttctagggcacaatctataggatttaaccaaggttttagaaacctttggggtcctcaacatcaatcattggaccaaagtaccttaactatatggcttgataaaaattcaggaggaagtggttttaaatctctaaagaattatcgttccggttattttgggagtagtattaagctacaacctggttttactgctggaattattacttctttttatctttcaaataatcaagattatccggggaaccatgatgaaattgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaatgtgtatataagaagaagtggagatggaaatattattggaagagaaatgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17265" stop="15629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16965" g_stop="16706" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="364" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="15929" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="512" r_length="148" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E308698" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16965" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAAT</genome_strand>
        <mrna_strand>ACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATTCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCCGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTAT......................................................................................CTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAAGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310819" ref_strand="+" ref_description="SGN-E310819 [cLEZ-15-M5]">
      <seq>actcactcaacaccaaagtaccattaaaacaactttttggattttatatccaaacaattattatggaattccttctttatttacttttatttttcttactcaattcaagattaatcaattctcaaggtcccccttcacctggctactatcctagttctagggcacaatctataggatttaaccaaggttttagaaacctttggggtcctcaacatcaatcattggaccaaagtaccttaactatatggcttgataaaaattcaggaggaagtggttttaaatctctaaagaattatcgttccggttattttgggagtagtattaagctacaacctggttttactgctggaattattacttctttttatctttcaaataatcaagattatccggggaaccatgatgaaattgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaatgtgtatataagaggaagtggagatggaaatattattggaagagaaatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17269" stop="15631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16969" g_stop="16706" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="368" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="15931" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="514" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E310819" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16969" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAA</genome_strand>
        <mrna_strand>ACTCACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATTCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCCGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTAT......................................................................................CTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598216" ref_strand="+" ref_description="SGN-E598216 [73885]">
      <seq>cactcaaccaaagtgccattaaaacaacttttggattttatccaaacaattattatggaatttcttctttctttacttctatttttcttattcaatgcaagattaatcaatgctcaaggccccccttcacctggctactatcctagttctagggtacaatctttaggatttaaccaaggttttaggaacctttggggtcctcaacatcaatcattggaccaaagtaccttaactatatggcttgataaaaattcaggaggaagtggttttaaatctctaaaaaattatcgttctggttattttgggacttatattaagctacaacctggtttcactgctggaattattacttctttctatctttcaaacaatcaagattatccagggaaccatgatgaaattgatattgaatttcttggaacaacacaaaaagccatatacttttacaaacaaaatgtgtatataagaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17266" stop="15665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16966" g_stop="16706" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="360" r_length="104" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="15965" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="472" r_length="112" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E598216" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E598216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16966" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATAC-TTTACAAAC-AAATGTGTATATAAGAGGAA</genome_strand>
        <mrna_strand>CACTC-A-ACCAAAGTGCCATTAAAACAAC-TTTTGGA-TTT-TATCCAAACAATTATTATGGAATTTCTTCTTTCTTTACTTCTATTTTTCTTATTCAATGCAAGATTAATCAATGCTCAAGGCCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGTACAATCTTTAGGATTTAACCAAGGTTTTAGGAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTTAAATCTCTAAAAAATTATCGTTCTGGTTATTTTGGGACTTATATTAAGCTACAACCTGGTTTCACTGCTGGAATTATTACTTCTTTCTAT......................................................................................CTTTCAAACAATCAAGATTATCCAGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACA-CAAA-AAGCCATATACTTTTACAAACAAAATGTGTATATAAGAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301795" ref_strand="+" ref_description="SGN-E301795 [cLEW-25-M24]">
      <seq>tcactcaacaccaaagtaccattaaaacaactttttggattttatatccaaacaattattatggaattccttctttatttacttttatttttcttactcaattcaagattaatcaattctcaaggtcccccttcacctggctactatcctagttctagggcacaatctataggatttaaccaaggttttagaaacctttggggtcctcaacatcaatcattggaccaaagtaccttaactatatggcttgataaaaattcaggaggaagtggttttaaatctctaaagaattatcgttccggttattttgggagtagtattaagctacaacctggttttactgctggaattattacttctttttatctttcaaataatcaagattatccggggaaccatgatgaaattgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17267" stop="15678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16967" g_stop="16706" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="366" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="15978" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="465" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E301795" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16967" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTG</genome_strand>
        <mrna_strand>TCACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATTCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCCGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTAT......................................................................................CTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537983" ref_strand="+" ref_description="SGN-E537983 [TUS-56-N21]">
      <seq>ccgaagtaccattaaaacaactttttggattttatatccaaacaattattatggaattccttctttatttactttcatttttcttactcaattcaagattaatcaattctcaaggtcccccttcacctggctacatatcctacttctagggcacaatctataggatttaaccaaggttttagaaacctttggggtcctcaacatctatcattggaccaaactaccttaactatatggctagataaaaattcacgaggaagtggttttaaatctctaaagaattatcgttccggttattttgggagtagtattaagctacaacctggttttactgctggaattattacttctttttatctttcacataatcaacattatccggggaaccatgatgaagttgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17257" stop="15681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16957" g_stop="16706" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="357" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="15981" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="453" r_length="96" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E537983" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16957" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTAC-TATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAAT</genome_strand>
        <mrna_strand>CCGAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTCATTTTTCTTACTCAATTCAAGATTAATCAATTCTCAAGGTCCCCCTTCACCTGGCTACATATCCTACTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCTATCATTGGACCAAACTACCTTAACTATATGGCTAGATAAAAATTCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCCGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTAT......................................................................................CTTTCACATAATCAACATTATCCGGGGAACCATGATGAAGTTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581070" ref_strand="+" ref_description="SGN-E581070 [6313]">
      <seq>aggaacctttggggtcctcaacatcaatcattggaccaaagtaccttaactatatggcttgataaaaattcaggaggaagtggtttcaaatctctaaaaaattatcgttctggttattttgggacttatattaagctacaacctggtttcactgctggaattattacttcttgctatctttcaaaccatcaagattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17078" stop="15861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16778" g_stop="16706" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="177" r_length="104" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="16056" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="198" r_length="21" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E581070" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>198</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E581070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16778" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="16056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTAT</genome_strand>
        <mrna_strand>AGGAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTCAAATCTCTAAAAAATTATCGTTCTGGTTATTTTGGGACTTATATTAAGCTACAACCTGGTTTCACTGCTGGAATTATTACTTCTTGCTAT......................................................................................CTTTCAAACCATCAAGATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307950" ref_strand="+" ref_description="SGN-E307950 [cLEZ-7-N20]">
      <seq>taccattaaaacaactttttggattttatatccaaacaattattatggaattccttctttatttacttttatttttcttactcaattcaagattaatcaattctcaaagtcccccttcacctggctactatcctagttctagggcacaatctataggatttaaccaaagttttagaaacctttggggtcctcaacatcaatcattggaccaaagtaccttaactatatggcttgataaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17251" stop="16410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16951" g_stop="16710" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E307950" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16951" e_stop="16710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAAT</genome_strand>
        <mrna_strand>TACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATTCTCAAAGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAAGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700199" ref_strand="+" ref_description="SGN-E700199 [FA12BG05]">
      <seq>aaataatattctttttggatcagaaaataattgaaattcgcgataaagaaaaattgttgttttgatcttccattgaagggttcattgatttctgagctttttggttcaaagggttttttcagaaaatggagaaagtaatgaatatattgaagccgaaaccgaatcctcaacagattttgagggattggcaacgtcggctacggcaagagtgtcggaatattgaacgtcaaattcgagatatacaaagggaggagaagaatgtacagaaagcaattaaagaagcagcaaagagaaatgatatgggttctgccaaggcacttgctaaagagattgtgagatctaaaaagactgtgaaccgattatacgagaataaggcgcagttgaattcaatatccatgcaccttggagaaagtgttgccattgctcgcacagtggggcatttgtctaagagcgctgaagtcatgaagctcgtcaataatcttattaaggctccagaagtggctatgacaatgcaggagtttagtaaagaaatgaccaaggctggtgtcatggaagaaatggtcaatgatgcggtggacagtgccctggattcagaagacatggaagaggaaattgaagaagaagttgacaaggtcctgactgcaattgctggtgaaactactgcacaattacctgaagcagtccgaaaggagaagttaaagcaacccgcccaggcagtggaggatgcagaggatgacgaagaagatctagaagaactaagggcacgtcttgctaaagttagatcctaagtgatttttaaaattgactcgcgctgcctctaaggcttcgatgtaaaatatgttgtgtgtgaaacaaagacctcttctatggtctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="35891" stop="42599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36191" g_stop="36427" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36428" i_stop="36725" i_length="298">
            <donor d_prob="0.770" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36726" g_stop="36802" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="314" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36803" i_stop="38384" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38385" g_stop="38487" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="417" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38488" i_stop="40246" i_length="1759">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40247" g_stop="40368" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="539" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40369" i_stop="41867" i_length="1499">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41868" g_stop="42059" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="731" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42060" i_stop="42155" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42156" g_stop="42299" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="875" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E700199" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36191" e_stop="36427"/>
          <exon e_start="36726" e_stop="36802"/>
          <exon e_start="38385" e_stop="38487"/>
          <exon e_start="40247" e_stop="40368"/>
          <exon e_start="41868" e_stop="42059"/>
          <exon e_start="42156" e_stop="42299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAATATTCTTTTTGGATCAGAAAATAATTGAAATTCGCGATAAAGAAAAATTGTTGTTTTGATCTTCCATTGAAGGGTTCATTGATTTCTGAGCTTTTTGGTTCAAAGGGTTTTTTCAGAAAATGGAGAAAGTAATGAATATATTGAAGCCGAAACCGAATCCTCAACAGATTTTGAGGGATTGGCAACGTCGGCTCCGGCAAGAGTGTCGGAATATTGAACGTCAAATTCGAGGTGAATTGTATTTCTGTTAAATTGTTTGTAGTCAGGAAGGAAATGGGGGTTTTTGGGTTATTGTAAAAATTTGATTTTTATGTTGGGCTTTTTGAATTTTTCCTGTTTTGGGGTTTGTGGATTTTTCTTTAAGCCGAGGGTGTATTGGAAATAGCCTTTGTACATTTGAGCTAGGGTAAGGTTTACGTACGCTCTACACTTCCCGAGACACCACTTTGTGGGACTACAGTGTGTATGTTTTTTTTTTTTTTTGAATTGTTCTATTTTGGGTTTTGTGAATTTTCTGGATTTTGATTAGATATACAAAGGGAGGAGAAGAATGTACAGAAAGCAATTAAAGAAGCAGCAAAGAGAAATGATATGGGTTCTGCCAAGGTGACTTACTGCTCCTTTTAGATTGTTTATCTTGCTGTTTTGCTGTCGTTGTTTCCATCGTATCCTTTGTTGATCACATTTTTGAGCCGAGAGTGTATTGCAAACAACCTCTCTGTCCTAGAAAGGTGGCCATACCCCACTCGTGGATTATATTGGATATTTTGTTGTAGTTGAACTTCTTAGATTGAAAAACCAATCACATTTTTAGTTTTTGGTGGTGATGAATGCTTTTTTGTTGCCTGCTGATTCTTATAATCTTACTTTACAAGGGAGATATACTGAGAAATAGTTGTTGCTCGGGCTCTCTGAAATTGTTGTTGCACCCGTGTCGGATTCTCCAAAAGGCATGACTCTTGGATTATCCGATACACACCTGTCAACAGTTTTTATGAGTTCGAGCAACATAGGTCCAAAGTAAGTTCATAGAAATTGTGCCACTTTGGAGCTAGGAGAAGAAAAATATTGAATTTTCCTATAGTTAGATTATATATGTGATTAAATTACCTAAAGCATGGATCTTTAAGTTGTTTCTACTCTTTATGCCACTTTTTTCGCACTGGTTTCTTGCAAACTTGTGCTCATGGCTTATTGTTCTTGTTTATTATACTAGTTATTAGGTTCAATATGTTATTCTCATGCCTTCTAACAATAGTGAGATGATATTGGGAAGTTTTCTGAGTATGTAGAATATGCGGGAAACTATTAACTTCCAATGTGTTATTTCTCATAGTTGCTTGTTCATATTTTCAGAATTTAGGCATTTGCTAAAAGACCTGTGAGATCAATAAAAAAGGTTTTTAATTGCTTTACCTAGCCCCCTCTCCCTGTCATGCTTTAAATCTCGGTCTATAACACAGTTAAATTGAGAAATAGTCAATAGACTGAACTTGATGTTTGAAAATTTGTTATTTCAGATCAGGCAATGAAGAGGCATTTTTTTTTTATTGAACCAAGGTTATTTCATTAAATTAGAGGTATCTCCTGTATACAGGAAGTATACCAAAAAATCATGAGAACCTACACAACAATATGGTTCTCTACAAACTGTATCCAATTCCAATCTTCTACACAAATAGGGACCACATGGGCACACAAAAACTAAAACAAAGAACTGTTCCACTAGGGTACAACGCCATTTACTACTTCATGAAATGCTCTCCTATTCCTCTCCTCAAAACGATCCACATCAATGCAAGTGGAGTTATGTCTCATGTCCCGTGTCTTGTATTTTAAATGTTGCGAAATGAGAAAGAGAAGAAGGATGAATGCGCTGCTTTGAAGGCACTTTCTTCATCTGTCACAGTGTGCTTGACCATTGAGATGTTTTGCATATAACACTTGGCGTATTAGAACATCTATTTTGGGCCATTGATAGAGTTTCAGGTGGTTTAGAAACCAATATGCTTTTTCAGAAACTTCTAAGGAATGCCTATTTTAATAGTTAGATTAGTACTCATCCAAGATTTCTTCTAGTGTGTATGTTGCATTCAGTCTGATATTATACATTTTTATGAGACATGATTTATTGGTTTTTGGCATCCCATTGCTTATTCATATTGGAGTGTTGATGTTTTTGTCACAGGCACTTGCTAAAGAGATTGTGAGATCTAAAAAGACTGTGAACCGATTATACGAGAATAAGGCGCAGTTGAATTCAATATCCATGCACCTTGGAGAAAGTGTTGGTATGATCAAAGTCTTGCTTCTCCTGTTGTATATATGTATATGCTGTAGTATATTCAGGATTCTGCATTTGGTCCCCTAAGTTCTTGTTGATGAGCAAACTGTCTTTAGAACAATATGCATCCATTGAGAAGGTAGCACCATTATTTCTTGACAGGGATTAAGGATATCTATCTCATGTTGTATAATGAATAATTTTAAAAGTTCTCTTTCTTGGACAATGTATCAGTTGCTGGCGTGCAAATGCAATGTCTTATTTAAGGGAGTTTCAAGAGTGTCATCATATACAAGTCACATCAAATGTCTTGCTGATTTTGTTCGATTGTTGAATAGGTAGTTTGAACTTTGAAGAGTCATAATGTGTAATTATATAGATGTTCAAAATGCAGAAGTAGGATTTCATATTTTTCTTTATGATTTCGATTTCTTTAATAAGAGGTGAAAGTTATCACTTTATGCTGGTCAACCAGATGTTATTGTGGTGAAACTGACAAAATTCTGCGTTATTTATGACCGAAAAATCTGAAGGGAGCAACCCTTTGGGCCAACCGCAGCCTATGGAATTCAGGATGATGGGGCACCCCTCTACCCTTCTCCACTCAAATATTGAACTTAGTTCGCTTGGCGCAAGGTTCAAACTTGTAACCTAAGATACAAGTGCCTCAACCTTTGCCATCTGAGATAATCCCTGGAAGCAATACAATTCTTTCTGTTGAATTGATTCTGTGTAATAGTAGGAACATTCTACATATGACTGGCTGTCCCAAATACATTGATATCGGAACTTGTAAAGGAACCTCTTCCTAATAATAATAAGGTATCACCCAAGTGTGTCCTGGTGGTCAATGAAGTAGGAGGAGAAACATGACGTCTCAAGTTCAAATCCCTGCGGAATAAAAAACACTATGTGTTTTCTTCCATCTGTCTAAACCTTGGTGGACAGAATTACCTGGTACCTATTGCTGCTGGTGGGAGCTAGCAAATATCCCATGCAATTAGTCGAGGTGCATGTAAGCTGGCTTGGACGCCATGGTTATCAAAATTAACATGAGCTGCCATTACCTTGACTTTCATGATGGATGGTGACTGTACCAATCTTGATCTTAAGTGGAACTGGATCATGTGTTTACTCTAGTAGTTGGTTGTACTGATTGGCGAGGACTTCCTAAAGAAAAAGGAAAAGGAATCATTCTTATTTTTTCATATAGGAGAATTTCTTCTTTCAATGATACAGCCTACTGTAGTTGCAGAACTGATGTATGCTCCTTATATTTAGAAAAAATGCGTACTATGAAAAAAGCATCTTTAGCCTATGACAGTTTTTAATGATCAATTAGTTATGAACTTTTAGCCCCTGTTGCGTTATTAAGTTTATGGGAAACCAACTTTATTTTCTATATCTGAACTCCATGAAAAATTGCAATCATCTTTTCATGTCTGATAGGAGAACTTTTTTCTTCCTACTACCATATAATGAATTTATTCCAGAATTGTTTTTGTTTGCTATATGCTGTAACAGATTCTTAGTTAACAAGTTATTGCATATGTATATTAAGTTGGTGCTAGATTGTCTTACATTTTGAAATATTTGATAGCATGTTGGCGTGTCAACTGCTTTATACAGAATACCTATGTAGCTTGATTTTTTCTGTTTAGGAAAATAAACTGTATTATGAAGCCGGCCTCTTGCTTTCTACTTTAATGTTAGGTTATGTGTTGGCTTCTTCAAGTGTCCCATTGAACTTCTAATTGGTTTTGCAGCCATTGCTCGCACAGTGGGGCATTTGTCTAAGAGCGCTGAAGTCATGAAGCTCGTCAATAATCTTATGAAGGCTCCAGAAGTGGCTATGACAATGCAGGAGTTTAGTAAAGAAATGACCAAGGTATATCAGTTTGGTTTTAGCTTTTTGAGCTTCAATGAAGTTCTTGAGCTTTCCTCCTGGTTGGATGTTGCTATGGCTCTCTTATGCACTTTACTTTATCTTAAAAGTAATTCTGAAGTTCAATCTATGCAACAAGGTTTCCAACCATACAAGAATGTTTTTCAGTCTCAAGGTTTGCTAAAAATTACGATAAAGAAGTTTGACCACATATATAGTTAATAACTAAGCACGAGATAACAAAAGTTGCCCACAAAATTCCTTTCCTTCTGGCGGGCTAGCACCGTGTGTTGTGCCAAAGTTTCAAGCCAAGTGTTCGCGCTGTGTTGATGTTGCTAGCACACTTTGATTTTTGTGTCCCATTATGTTGCATTGCTTCAGAAGCCTCCCCAGCTTGTTGCATCTATGTCCAACACGGCGCGTTGGGCACTATTTACCAGCTTGTTTTTCTCCGAGTTGTTCAACACAATCCTCCAGCTTCCAAATATGGTATTCTTTGCATGAATCTTTGAGTGACTTGTTGAATACCCCTTCTAGTTGTATCCAAAATTCTTTAAGCTTCTTGATCTGCAATCCTTGGACGCTCTTGGCCTTTTAATGAGTTAGCAGTTCTTTGGACTCTTCAAATTCTTCCATAACTAGTCTTTAGGTATGAGCGTTGAACGTGTACCCCACATCATGAGTATACATTTTTTTTTATAATTGTGGTGTATGAGCCAGCTTGCGTGCACTGAGCACACAATTTTAGAAAATCGTATAGAAGAGTTGATCAATGTATTTGAGTCATAAATAAAAATTAAAGATAAGAGTGAGCTTCTAAAAAAGATGAATGTTTGATCTCATTTAGTTAGCTAAAAGAAATCCTGCCCTATGTAAGTCCTCACATGCCGTATCATGATTTTTAAGGACTTTTGTGGGGATATCTTATGGGAATTGATTTTATTGCTATGACCTAGTACTGAAAATAATCAAGTAACACAAAAATACTTCTATCACAATTCTTCAAAGATTTGTCAAATAAACACAAACTGAGACATTTACCCTACAGCTCCTAGGATGGCCCTAAAGTGTTTTTGGGAGGAGGCCGGGGGGGGGGGGGGATGGCCAATGGGCATCTCTGTGTGCATATAGATACAAAATTTAATGGGAAAAAGGTCAAATTTGTTCCTCTTCTATCTGAAAAGGATCAATTTTATCCTCTTCTATGCGAAGAAGATCCATTTGGTGATGTGCACTCACTTGGCATGCCACATTACCCCCAAACCATTTTACTTCATTTCCTCCGCTGCTTCTTCCACCACTAGAGCCACCTCCCCTCAACCACCATTGCCACCATCAACAACACCGTTTTCACTGTAGAGTGGACCAAAAGGGGAGTCTGTGGCTTGTCACATCATCCCCCCTCCCTCTTCTTCTTCTCTCTCTCTCTGTCACACACACACACACACACGCAAACACACTTTTTTTTAATCTGGAAATTACCCTTTCTCTTGTTATTGCAGGCTGGTGTCATGGAAGAAATGGTCAATGATGCGGTGGACAGTGCCCTGGATTCAGAAGACATGGAAGAGGAAATTGAAGAAGAAGTTGACAAGGTCCTGACTGCAATTGCTGGTGAAACTACTGCACAATTACCTGAAGCAGTCCGAAAGGAGAAGTTAAAGCAACCCGCCCAGGCAGTGGAGGATGCAGAGGTATGTTCCTTTCATCTGTGATTTATTGTATAGAATGATCCTTTCTGTGATCAAGCAAACTGAATTGATTAACGTTTGATTTGTTCTTTCTTGCAGGATGACGAAGAAGATCTAGAAGAACTAAGGGCACGTCTTGCTAAAGTTAGATCCTAAGTGATTTTTAAAATTGACTCGCGCTGCCTCTAAGGCTTCGATGTAAAATATGTTGTGTGTGAAACAAAGACCTCTTCTATGGTCTGA</genome_strand>
        <mrna_strand>AAATAATATTCTTTTTGGATCAGAAAATAATTGAAATTCGCGATAAAGAAAAATTGTTGTTTTGATCTTCCATTGAAGGGTTCATTGATTTCTGAGCTTTTTGGTTCAAAGGGTTTTTTCAGAAAATGGAGAAAGTAATGAATATATTGAAGCCGAAACCGAATCCTCAACAGATTTTGAGGGATTGGCAACGTCGGCTACGGCAAGAGTGTCGGAATATTGAACGTCAAATTCGAG..........................................................................................................................................................................................................................................................................................................ATATACAAAGGGAGGAGAAGAATGTACAGAAAGCAATTAAAGAAGCAGCAAAGAGAAATGATATGGGTTCTGCCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGCTAAAGAGATTGTGAGATCTAAAAAGACTGTGAACCGATTATACGAGAATAAGGCGCAGTTGAATTCAATATCCATGCACCTTGGAGAAAGTGTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGCTCGCACAGTGGGGCATTTGTCTAAGAGCGCTGAAGTCATGAAGCTCGTCAATAATCTTATTAAGGCTCCAGAAGTGGCTATGACAATGCAGGAGTTTAGTAAAGAAATGACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGTCATGGAAGAAATGGTCAATGATGCGGTGGACAGTGCCCTGGATTCAGAAGACATGGAAGAGGAAATTGAAGAAGAAGTTGACAAGGTCCTGACTGCAATTGCTGGTGAAACTACTGCACAATTACCTGAAGCAGTCCGAAAGGAGAAGTTAAAGCAACCCGCCCAGGCAGTGGAGGATGCAGAG................................................................................................GATGACGAAGAAGATCTAGAAGAACTAAGGGCACGTCTTGCTAAAGTTAGATCCTAAGTGATTTTTAAAATTGACTCGCGCTGCCTCTAAGGCTTCGATGTAAAATATGTTGTGTGTGAAACAAAGACCTCTTCTATGGTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348025" ref_strand="+" ref_description="SGN-E348025 [cTOF-31-M23]">
      <seq>ttcattgatttctgagctttttggttcaaagggttttttcagaaaatggagaaagtaatgaatatattgaagccgaaaccgaatcctcaacagattttgagggattggcaacgtcggctacggcaagagtgtcggaatattgaacgtcaaattcgagatatacaaagggaggagaagaatgtacagaaagcaattaaagaagcagcaaagagaaatgatatgggttctgccaaggcacttgctaaagagattgtgagatctaaaaagactgtgaaccgattatacgagaataaggcgcagttgaattcaatatccatgcaccttggagaaagtgttgccattgctcgcacagtggggcatttgtctaagagcgctgaagtcatgaagctcgtcaataatcttatgaaggctccagaagtggctatgacaatgcaggagtttagtaaagaaatgaccaaggctggtgtcatggaagaaatggtcaatgatgcggtggacagtgccctggattcagaagacatggaagaggaaattgaagaagaagttgacaaggtcctgactgcaattgctggtgaaactactgcacaattacctgaagcagtccgaaaggagaagttaaagncaacccgcccagcagtggaggatgcagaggatgacgaagaagatctagaagaaactaaggcacgtcttgctaaagttagatcctaagtgatttttaaaattgactcgcgctgcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="35971" stop="42542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36271" g_stop="36427" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36428" i_stop="36725" i_length="298">
            <donor d_prob="0.770" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36726" g_stop="36802" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="234" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36803" i_stop="38384" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38385" g_stop="38487" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="337" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38488" i_stop="40246" i_length="1759">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40247" g_stop="40368" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="459" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40369" i_stop="41867" i_length="1499">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41868" g_stop="42059" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="651" r_length="192" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42060" i_stop="42155" i_length="96">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42156" g_stop="42242" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="738" r_length="87" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E348025" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36271" e_stop="36427"/>
          <exon e_start="36726" e_stop="36802"/>
          <exon e_start="38385" e_stop="38487"/>
          <exon e_start="40247" e_stop="40368"/>
          <exon e_start="41868" e_stop="42059"/>
          <exon e_start="42156" e_stop="42242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGATTTCTGAGCTTTTTGGTTCAAAGGGTTTTTTCAGAAAATGGAGAAAGTAATGAATATATTGAAGCCGAAACCGAATCCTCAACAGATTTTGAGGGATTGGCAACGTCGGCTCCGGCAAGAGTGTCGGAATATTGAACGTCAAATTCGAGGTGAATTGTATTTCTGTTAAATTGTTTGTAGTCAGGAAGGAAATGGGGGTTTTTGGGTTATTGTAAAAATTTGATTTTTATGTTGGGCTTTTTGAATTTTTCCTGTTTTGGGGTTTGTGGATTTTTCTTTAAGCCGAGGGTGTATTGGAAATAGCCTTTGTACATTTGAGCTAGGGTAAGGTTTACGTACGCTCTACACTTCCCGAGACACCACTTTGTGGGACTACAGTGTGTATGTTTTTTTTTTTTTTTGAATTGTTCTATTTTGGGTTTTGTGAATTTTCTGGATTTTGATTAGATATACAAAGGGAGGAGAAGAATGTACAGAAAGCAATTAAAGAAGCAGCAAAGAGAAATGATATGGGTTCTGCCAAGGTGACTTACTGCTCCTTTTAGATTGTTTATCTTGCTGTTTTGCTGTCGTTGTTTCCATCGTATCCTTTGTTGATCACATTTTTGAGCCGAGAGTGTATTGCAAACAACCTCTCTGTCCTAGAAAGGTGGCCATACCCCACTCGTGGATTATATTGGATATTTTGTTGTAGTTGAACTTCTTAGATTGAAAAACCAATCACATTTTTAGTTTTTGGTGGTGATGAATGCTTTTTTGTTGCCTGCTGATTCTTATAATCTTACTTTACAAGGGAGATATACTGAGAAATAGTTGTTGCTCGGGCTCTCTGAAATTGTTGTTGCACCCGTGTCGGATTCTCCAAAAGGCATGACTCTTGGATTATCCGATACACACCTGTCAACAGTTTTTATGAGTTCGAGCAACATAGGTCCAAAGTAAGTTCATAGAAATTGTGCCACTTTGGAGCTAGGAGAAGAAAAATATTGAATTTTCCTATAGTTAGATTATATATGTGATTAAATTACCTAAAGCATGGATCTTTAAGTTGTTTCTACTCTTTATGCCACTTTTTTCGCACTGGTTTCTTGCAAACTTGTGCTCATGGCTTATTGTTCTTGTTTATTATACTAGTTATTAGGTTCAATATGTTATTCTCATGCCTTCTAACAATAGTGAGATGATATTGGGAAGTTTTCTGAGTATGTAGAATATGCGGGAAACTATTAACTTCCAATGTGTTATTTCTCATAGTTGCTTGTTCATATTTTCAGAATTTAGGCATTTGCTAAAAGACCTGTGAGATCAATAAAAAAGGTTTTTAATTGCTTTACCTAGCCCCCTCTCCCTGTCATGCTTTAAATCTCGGTCTATAACACAGTTAAATTGAGAAATAGTCAATAGACTGAACTTGATGTTTGAAAATTTGTTATTTCAGATCAGGCAATGAAGAGGCATTTTTTTTTTATTGAACCAAGGTTATTTCATTAAATTAGAGGTATCTCCTGTATACAGGAAGTATACCAAAAAATCATGAGAACCTACACAACAATATGGTTCTCTACAAACTGTATCCAATTCCAATCTTCTACACAAATAGGGACCACATGGGCACACAAAAACTAAAACAAAGAACTGTTCCACTAGGGTACAACGCCATTTACTACTTCATGAAATGCTCTCCTATTCCTCTCCTCAAAACGATCCACATCAATGCAAGTGGAGTTATGTCTCATGTCCCGTGTCTTGTATTTTAAATGTTGCGAAATGAGAAAGAGAAGAAGGATGAATGCGCTGCTTTGAAGGCACTTTCTTCATCTGTCACAGTGTGCTTGACCATTGAGATGTTTTGCATATAACACTTGGCGTATTAGAACATCTATTTTGGGCCATTGATAGAGTTTCAGGTGGTTTAGAAACCAATATGCTTTTTCAGAAACTTCTAAGGAATGCCTATTTTAATAGTTAGATTAGTACTCATCCAAGATTTCTTCTAGTGTGTATGTTGCATTCAGTCTGATATTATACATTTTTATGAGACATGATTTATTGGTTTTTGGCATCCCATTGCTTATTCATATTGGAGTGTTGATGTTTTTGTCACAGGCACTTGCTAAAGAGATTGTGAGATCTAAAAAGACTGTGAACCGATTATACGAGAATAAGGCGCAGTTGAATTCAATATCCATGCACCTTGGAGAAAGTGTTGGTATGATCAAAGTCTTGCTTCTCCTGTTGTATATATGTATATGCTGTAGTATATTCAGGATTCTGCATTTGGTCCCCTAAGTTCTTGTTGATGAGCAAACTGTCTTTAGAACAATATGCATCCATTGAGAAGGTAGCACCATTATTTCTTGACAGGGATTAAGGATATCTATCTCATGTTGTATAATGAATAATTTTAAAAGTTCTCTTTCTTGGACAATGTATCAGTTGCTGGCGTGCAAATGCAATGTCTTATTTAAGGGAGTTTCAAGAGTGTCATCATATACAAGTCACATCAAATGTCTTGCTGATTTTGTTCGATTGTTGAATAGGTAGTTTGAACTTTGAAGAGTCATAATGTGTAATTATATAGATGTTCAAAATGCAGAAGTAGGATTTCATATTTTTCTTTATGATTTCGATTTCTTTAATAAGAGGTGAAAGTTATCACTTTATGCTGGTCAACCAGATGTTATTGTGGTGAAACTGACAAAATTCTGCGTTATTTATGACCGAAAAATCTGAAGGGAGCAACCCTTTGGGCCAACCGCAGCCTATGGAATTCAGGATGATGGGGCACCCCTCTACCCTTCTCCACTCAAATATTGAACTTAGTTCGCTTGGCGCAAGGTTCAAACTTGTAACCTAAGATACAAGTGCCTCAACCTTTGCCATCTGAGATAATCCCTGGAAGCAATACAATTCTTTCTGTTGAATTGATTCTGTGTAATAGTAGGAACATTCTACATATGACTGGCTGTCCCAAATACATTGATATCGGAACTTGTAAAGGAACCTCTTCCTAATAATAATAAGGTATCACCCAAGTGTGTCCTGGTGGTCAATGAAGTAGGAGGAGAAACATGACGTCTCAAGTTCAAATCCCTGCGGAATAAAAAACACTATGTGTTTTCTTCCATCTGTCTAAACCTTGGTGGACAGAATTACCTGGTACCTATTGCTGCTGGTGGGAGCTAGCAAATATCCCATGCAATTAGTCGAGGTGCATGTAAGCTGGCTTGGACGCCATGGTTATCAAAATTAACATGAGCTGCCATTACCTTGACTTTCATGATGGATGGTGACTGTACCAATCTTGATCTTAAGTGGAACTGGATCATGTGTTTACTCTAGTAGTTGGTTGTACTGATTGGCGAGGACTTCCTAAAGAAAAAGGAAAAGGAATCATTCTTATTTTTTCATATAGGAGAATTTCTTCTTTCAATGATACAGCCTACTGTAGTTGCAGAACTGATGTATGCTCCTTATATTTAGAAAAAATGCGTACTATGAAAAAAGCATCTTTAGCCTATGACAGTTTTTAATGATCAATTAGTTATGAACTTTTAGCCCCTGTTGCGTTATTAAGTTTATGGGAAACCAACTTTATTTTCTATATCTGAACTCCATGAAAAATTGCAATCATCTTTTCATGTCTGATAGGAGAACTTTTTTCTTCCTACTACCATATAATGAATTTATTCCAGAATTGTTTTTGTTTGCTATATGCTGTAACAGATTCTTAGTTAACAAGTTATTGCATATGTATATTAAGTTGGTGCTAGATTGTCTTACATTTTGAAATATTTGATAGCATGTTGGCGTGTCAACTGCTTTATACAGAATACCTATGTAGCTTGATTTTTTCTGTTTAGGAAAATAAACTGTATTATGAAGCCGGCCTCTTGCTTTCTACTTTAATGTTAGGTTATGTGTTGGCTTCTTCAAGTGTCCCATTGAACTTCTAATTGGTTTTGCAGCCATTGCTCGCACAGTGGGGCATTTGTCTAAGAGCGCTGAAGTCATGAAGCTCGTCAATAATCTTATGAAGGCTCCAGAAGTGGCTATGACAATGCAGGAGTTTAGTAAAGAAATGACCAAGGTATATCAGTTTGGTTTTAGCTTTTTGAGCTTCAATGAAGTTCTTGAGCTTTCCTCCTGGTTGGATGTTGCTATGGCTCTCTTATGCACTTTACTTTATCTTAAAAGTAATTCTGAAGTTCAATCTATGCAACAAGGTTTCCAACCATACAAGAATGTTTTTCAGTCTCAAGGTTTGCTAAAAATTACGATAAAGAAGTTTGACCACATATATAGTTAATAACTAAGCACGAGATAACAAAAGTTGCCCACAAAATTCCTTTCCTTCTGGCGGGCTAGCACCGTGTGTTGTGCCAAAGTTTCAAGCCAAGTGTTCGCGCTGTGTTGATGTTGCTAGCACACTTTGATTTTTGTGTCCCATTATGTTGCATTGCTTCAGAAGCCTCCCCAGCTTGTTGCATCTATGTCCAACACGGCGCGTTGGGCACTATTTACCAGCTTGTTTTTCTCCGAGTTGTTCAACACAATCCTCCAGCTTCCAAATATGGTATTCTTTGCATGAATCTTTGAGTGACTTGTTGAATACCCCTTCTAGTTGTATCCAAAATTCTTTAAGCTTCTTGATCTGCAATCCTTGGACGCTCTTGGCCTTTTAATGAGTTAGCAGTTCTTTGGACTCTTCAAATTCTTCCATAACTAGTCTTTAGGTATGAGCGTTGAACGTGTACCCCACATCATGAGTATACATTTTTTTTTATAATTGTGGTGTATGAGCCAGCTTGCGTGCACTGAGCACACAATTTTAGAAAATCGTATAGAAGAGTTGATCAATGTATTTGAGTCATAAATAAAAATTAAAGATAAGAGTGAGCTTCTAAAAAAGATGAATGTTTGATCTCATTTAGTTAGCTAAAAGAAATCCTGCCCTATGTAAGTCCTCACATGCCGTATCATGATTTTTAAGGACTTTTGTGGGGATATCTTATGGGAATTGATTTTATTGCTATGACCTAGTACTGAAAATAATCAAGTAACACAAAAATACTTCTATCACAATTCTTCAAAGATTTGTCAAATAAACACAAACTGAGACATTTACCCTACAGCTCCTAGGATGGCCCTAAAGTGTTTTTGGGAGGAGGCCGGGGGGGGGGGGGGATGGCCAATGGGCATCTCTGTGTGCATATAGATACAAAATTTAATGGGAAAAAGGTCAAATTTGTTCCTCTTCTATCTGAAAAGGATCAATTTTATCCTCTTCTATGCGAAGAAGATCCATTTGGTGATGTGCACTCACTTGGCATGCCACATTACCCCCAAACCATTTTACTTCATTTCCTCCGCTGCTTCTTCCACCACTAGAGCCACCTCCCCTCAACCACCATTGCCACCATCAACAACACCGTTTTCACTGTAGAGTGGACCAAAAGGGGAGTCTGTGGCTTGTCACATCATCCCCCCTCCCTCTTCTTCTTCTCTCTCTCTCTGTCACACACACACACACACACGCAAACACACTTTTTTTTAATCTGGAAATTACCCTTTCTCTTGTTATTGCAGGCTGGTGTCATGGAAGAAATGGTCAATGATGCGGTGGACAGTGCCCTGGATTCAGAAGACATGGAAGAGGAAATTGAAGAAGAAGTTGACAAGGTCCTGACTGCAATTGCTGGTGAAACTACTGCACAATTACCTGAAGCAGTCCGAAAGGAGAAGTTAAAG-CAACCCGCCCAGGCAGTGGAGGATGCAGAGGTATGTTCCTTTCATCTGTGATTTATTGTATAGAATGATCCTTTCTGTGATCAAGCAAACTGAATTGATTAACGTTTGATTTGTTCTTTCTTGCAGGATGACGAAGAAGATCTAGAAGAACTAAGGGCACGTCTTGCTAAAGTTAGATCCTAAGTGATTTTTAAAATTGACTCGCGCTGCCTC</genome_strand>
        <mrna_strand>TTCATTGATTTCTGAGCTTTTTGGTTCAAAGGGTTTTTTCAGAAAATGGAGAAAGTAATGAATATATTGAAGCCGAAACCGAATCCTCAACAGATTTTGAGGGATTGGCAACGTCGGCTACGGCAAGAGTGTCGGAATATTGAACGTCAAATTCGAG..........................................................................................................................................................................................................................................................................................................ATATACAAAGGGAGGAGAAGAATGTACAGAAAGCAATTAAAGAAGCAGCAAAGAGAAATGATATGGGTTCTGCCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGCTAAAGAGATTGTGAGATCTAAAAAGACTGTGAACCGATTATACGAGAATAAGGCGCAGTTGAATTCAATATCCATGCACCTTGGAGAAAGTGTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGCTCGCACAGTGGGGCATTTGTCTAAGAGCGCTGAAGTCATGAAGCTCGTCAATAATCTTATGAAGGCTCCAGAAGTGGCTATGACAATGCAGGAGTTTAGTAAAGAAATGACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGTCATGGAAGAAATGGTCAATGATGCGGTGGACAGTGCCCTGGATTCAGAAGACATGGAAGAGGAAATTGAAGAAGAAGTTGACAAGGTCCTGACTGCAATTGCTGGTGAAACTACTGCACAATTACCTGAAGCAGTCCGAAAGGAGAAGTTAAAGNCAACCCGCCCA-GCAGTGGAGGATGCAGAG................................................................................................GATGACGAAGAAGATCTAGAAGAAACTAAGGCACGTCTTGCTAAAGTTAGATCCTAAGTGATTTTTAAAATTGACTCGCGCTGCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251989" ref_strand="-" ref_description="SGN-E251989 [cLEG-8-E1]">
      <seq>aggagtttagtaaagaaatgaccaaggctggtgtcatggaagaaatggtcaatgatgcggtggacagtgccctggattcagaagacatggaagaggaaattgaagaagaagttgacaaggtcctgactgcaattgctggtgaaactactgcacaattacctgaagcagtccgaaaggagaagttaaagcaacccgcccaggcagtggaggatgcagaggatgacgaagaagatctagaagaactaagggcacgtcttgctaaagttagatcctaagtgatttttaaaattgactcgcgctgcctctaaggcttcgatgtaaaatatgttgtgtgtgaaacaaagacctcttctatggtctgacgagttgcatcttctatctggaagagaggatattgaagtaccttctatatcttagaatcaatactcatgatttcttgtattgattatcaatgtgagttgtgatctttttctctttgagcatgcttttcattgtatggtaactgaaaatctatgctaacaacatttcttgctatttagtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="40043" stop="120451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40343" g_stop="40368" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40369" i_stop="41867" i_length="1499">
            <donor d_prob="0.938" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41868" g_stop="42059" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="218" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42060" i_stop="42155" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42156" g_stop="42496" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="559" r_length="341" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E251989" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251989" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="40343" e_stop="40368"/>
          <exon e_start="41868" e_stop="42059"/>
          <exon e_start="42156" e_stop="42496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGTTTAGTAAAGAAATGACCAAGGTATATCAGTTTGGTTTTAGCTTTTTGAGCTTCAATGAAGTTCTTGAGCTTTCCTCCTGGTTGGATGTTGCTATGGCTCTCTTATGCACTTTACTTTATCTTAAAAGTAATTCTGAAGTTCAATCTATGCAACAAGGTTTCCAACCATACAAGAATGTTTTTCAGTCTCAAGGTTTGCTAAAAATTACGATAAAGAAGTTTGACCACATATATAGTTAATAACTAAGCACGAGATAACAAAAGTTGCCCACAAAATTCCTTTCCTTCTGGCGGGCTAGCACCGTGTGTTGTGCCAAAGTTTCAAGCCAAGTGTTCGCGCTGTGTTGATGTTGCTAGCACACTTTGATTTTTGTGTCCCATTATGTTGCATTGCTTCAGAAGCCTCCCCAGCTTGTTGCATCTATGTCCAACACGGCGCGTTGGGCACTATTTACCAGCTTGTTTTTCTCCGAGTTGTTCAACACAATCCTCCAGCTTCCAAATATGGTATTCTTTGCATGAATCTTTGAGTGACTTGTTGAATACCCCTTCTAGTTGTATCCAAAATTCTTTAAGCTTCTTGATCTGCAATCCTTGGACGCTCTTGGCCTTTTAATGAGTTAGCAGTTCTTTGGACTCTTCAAATTCTTCCATAACTAGTCTTTAGGTATGAGCGTTGAACGTGTACCCCACATCATGAGTATACATTTTTTTTTATAATTGTGGTGTATGAGCCAGCTTGCGTGCACTGAGCACACAATTTTAGAAAATCGTATAGAAGAGTTGATCAATGTATTTGAGTCATAAATAAAAATTAAAGATAAGAGTGAGCTTCTAAAAAAGATGAATGTTTGATCTCATTTAGTTAGCTAAAAGAAATCCTGCCCTATGTAAGTCCTCACATGCCGTATCATGATTTTTAAGGACTTTTGTGGGGATATCTTATGGGAATTGATTTTATTGCTATGACCTAGTACTGAAAATAATCAAGTAACACAAAAATACTTCTATCACAATTCTTCAAAGATTTGTCAAATAAACACAAACTGAGACATTTACCCTACAGCTCCTAGGATGGCCCTAAAGTGTTTTTGGGAGGAGGCCGGGGGGGGGGGGGGATGGCCAATGGGCATCTCTGTGTGCATATAGATACAAAATTTAATGGGAAAAAGGTCAAATTTGTTCCTCTTCTATCTGAAAAGGATCAATTTTATCCTCTTCTATGCGAAGAAGATCCATTTGGTGATGTGCACTCACTTGGCATGCCACATTACCCCCAAACCATTTTACTTCATTTCCTCCGCTGCTTCTTCCACCACTAGAGCCACCTCCCCTCAACCACCATTGCCACCATCAACAACACCGTTTTCACTGTAGAGTGGACCAAAAGGGGAGTCTGTGGCTTGTCACATCATCCCCCCTCCCTCTTCTTCTTCTCTCTCTCTCTGTCACACACACACACACACACGCAAACACACTTTTTTTTAATCTGGAAATTACCCTTTCTCTTGTTATTGCAGGCTGGTGTCATGGAAGAAATGGTCAATGATGCGGTGGACAGTGCCCTGGATTCAGAAGACATGGAAGAGGAAATTGAAGAAGAAGTTGACAAGGTCCTGACTGCAATTGCTGGTGAAACTACTGCACAATTACCTGAAGCAGTCCGAAAGGAGAAGTTAAAGCAACCCGCCCAGGCAGTGGAGGATGCAGAGGTATGTTCCTTTCATCTGTGATTTATTGTATAGAATGATCCTTTCTGTGATCAAGCAAACTGAATTGATTAACGTTTGATTTGTTCTTTCTTGCAGGATGACGAAGAAGATCTAGAAGAACTAAGGGCACGTCTTGCTAAAGTTAGATCCTAAGTGATTTTTAAAATTGACTCGCGCTGCCTCTAAGGCTTCGATGTAAAATATGTTGTGTGTGAAACAAAGACCTCTTCTATGGTCTGACGAGTTGCATCTTCTATCTGGAAGAGAGGATATTGAAGTACCTTCTATATCTTAGAATCAATACTCATGATTTCTTGTATTGATTATCAATGTGAGTTGTGATCTTTTTCTCTTTGAGCATGCTTTTCATTGTATGGTAACTGAAAATCTATGCTAACAACATTTCTTGCTATTTAGTAGAATTGGCTGTTCAATGT</genome_strand>
        <mrna_strand>AGGAGTTTAGTAAAGAAATGACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGTCATGGAAGAAATGGTCAATGATGCGGTGGACAGTGCCCTGGATTCAGAAGACATGGAAGAGGAAATTGAAGAAGAAGTTGACAAGGTCCTGACTGCAATTGCTGGTGAAACTACTGCACAATTACCTGAAGCAGTCCGAAAGGAGAAGTTAAAGCAACCCGCCCAGGCAGTGGAGGATGCAGAG................................................................................................GATGACGAAGAAGATCTAGAAGAACTAAGGGCACGTCTTGCTAAAGTTAGATCCTAAGTGATTTTTAAAATTGACTCGCGCTGCCTCTAAGGCTTCGATGTAAAATATGTTGTGTGTGAAACAAAGACCTCTTCTATGGTCTGACGAGTTGCATCTTCTATCTGGAAGAGAGGATATTGAAGTACCTTCTATATCTTAGAATCAATACTCATGATTTCTTGTATTGATTATCAATGTGAGTTGTGATCTTTTTCTCTTTGAGCATGCTTTTCATTGTATGGTAACTGAAAATCTATGCTAACAACATTTCTTGCTATTTAGTAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="46549" stop="47552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46849" g_stop="47253" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46849" e_stop="47253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAACGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAATCCTAATCTCTTTGTTAATAATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGGGATTGATTATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGAATTAGTGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAG-ATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="48006" stop="47069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47706" g_stop="47369" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47706" e_stop="47369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTTAACATGTAGCAACAACAAGTACTATATCATTAACAATTATCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTC-GGTTCGTGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTC-ATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="47079" stop="47917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47379" g_stop="47617" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47379" e_stop="47617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGATAATTGTTAATGATATAGTACTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="47080" stop="48159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47380" g_stop="47859" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47380" e_stop="47859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGATAATTGTTAATGATATAGTACTTGTTGTTGCTACATGTTAAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCACTACATCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTT-ACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555458" ref_strand="+" ref_description="SGN-E555458 [cTSC-3-M11]">
      <seq>ggatcccccgggctgcaggaaaaatgtcttcttcatcttcattattccctcttctctttgttgctatatttcttgttttatgttcccaaattgccctttcattatcacccaattttttcttacaatctcataatgatattattagtccaaagaaacttcaattaacaatgggtgaaaaattgattaggcaacttaatttgttccctaaacatgacattaatattgtttcttcaaaggacaataattatgaaaataaattatttgagaagaaattggatttatcttatcttggtgattctggtgccactgtccaagacttaggtcatcatgctggttattttcctcttataaacactaaatctgcaaggatgttctattttttctttgaatcaaggagtaacaagaatgatccagtagtgatatggttaacaggaggtccaggatgtagcagtgaattggcattattttatgaaaatggaccttttaaaatatcaaaaaatatgtctcttgtctggaatgattttggttgggacaaggtgtcaaaccttatatacgttgatcaaccaactggaactggtttcagttatacttctgatgaaagtgacattcgacacaatgagactggtgtaagcaatgacctttatgatttcctacaggccttcttcaatgctcatcctgagtatgtaaataatgatttctacattactggagaatcatatgctggacattatattcctgcatttgcttctagagttcatcaaggaaacataaagaaagaaggaattcacataaacctcaagggatttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="51515" stop="54702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51815" g_stop="52162" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="367" r_length="348" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52163" i_stop="52872" i_length="710">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52873" g_stop="53041" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="536" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53042" i_stop="54028" i_length="987">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54029" g_stop="54148" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="656" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54149" i_stop="54249" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54250" g_stop="54393" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="800" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54394" i_stop="54484" i_length="91">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54485" g_stop="54493" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="801" r_stop="809" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E555458" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51815" e_stop="52162"/>
          <exon e_start="52873" e_stop="53041"/>
          <exon e_start="54029" e_stop="54148"/>
          <exon e_start="54250" e_stop="54393"/>
          <exon e_start="54485" e_stop="54493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGTCTTCTTCATCTTCATTATTCCCTCTTCTCTTTGTTGCTATATTTCTTGTTTTATGTTCCCAAATTGCCCTTTCATTATCACCCAATTTTTTCTTACAATCTCATAATGATATTATTAGTCCAAAGAAACTTCAATTAACAATGGGTGAAAAATTGATTAGGCAACTTAATTTGTTCCCTAAACATGACATTAATATTGTTTCTTCAAAGGACAATAATTATGAAAATAAATTATTTGAGAAGAAATTGGATTTATCTTATCTTGGTGATTCTGGTGCCACTGTCCAAGACTTAGGTCATCATGCTGGTTATTTTCCTCTTATAAACACTAAATCTGCAAGGTTTGATTATTTATCTTACATAATTATATATTATTGACTTTATTTATTAGAACAACGGTAAAATTCTTATCATGTATATAGTTACGAGTTTGGACCGTGAAATTAGCGGTTATTAGATTATATTCCTCGAAATGCGATCTTTTTTTATGAACCTTGTGTGAGTGTGTAATATTTCGTACTCCGAACTATCCCTTTTTCTTTTTTGGTTTAAAAGTAGGAGCCTTGAAGCAATGATATAAATTGTTTCTCGCTTGACCTATAGGTTATTGGTTTGAGTCATGTTGCGTCAAGATAGACTGATTAAATTACGTCCTTGTGGGATGCGGTCATTTCCCAGACCTTGTTACGGACAATATTTCATGCATTTTATTTGTTCTTTTTTTTAAAAGAAGAATCTTGAAAGAACGATCTAAGTAATTAGTATATTCCTATTAAAGTAGGATAATTAAATTACATCTCCTTATGACGATGTAATTCTTTTTTGAACCCAATATGAATGTGAAATACTTCCTCTACTAAGCAATCTTTTTTTTTTTTTGCTTCGAAAGGAGAGTCTAAGAGTACATATTAAAGTTATCTTTGTCTGACCATTAATATACAACTTACATTAAATACTCTTGAGGCATAGTCTTTCTTCAAATCTACATAAATACGAGATACTTCATGTACCAGACTATTCTTTTTAATTAATGTAATTTATTTTGTTGTAGGATGTTCTATTTTTTCTTTGAATCAAGGAGTAACAAGAATGATCCAGTAGTGATATGGTTAACAGGAGGTCCAGGATGTAGCAGTGAATTGGCATTATTTTATGAAAATGGACCTTTTAAAATATCAAAAAATATGTCTCTTGTCTGGAATGATTTTGGTTGGGACAAGGTAATTTTTTTGGATTTTTCCTAAATTAATACATGATTTTATTATCAACAAATTCATTTCAATTTTTTTTTTGAATATCATGATTATTTTATTCGCAACTTGTTAATTATTGATTGAATTTTTTTTCTTCCATTCATGTAAAGTCATTTTTTTTTATAGCTGAGAAATTCGTTTGTAATCCGCTTTTTAATCAATCACACCTTTCATGCGAAGTCAATTTTTTTTCACCAACTAACTAATCTTCTTTGACTGTTTTTGCTATTCATTAGTTGTGACTTAAATTAGAAAGAAAAAAATTTCAAAAATCTTGAAATCTAAAGTAGTTCAACTATTGTTATTGACTTATATGGTTTTTTTTTTTTTTTTTATATATATATAGTGCTCTATTTTCATTTAATTGTCTCCACAAAAATTAAAAAGCAAATGCTTTTTTGTCAAAGAATCCTTTTTTTAATGGTCAAGAATAAATAGTCTTGAATTAATCATAAAGTTATCTCTAAAAACAGAAAATGACATCGTATACTTAGAAGACTAAATTTTATATTTTATGTGTTAATATATCCTCTCAATTTCTTTATATATTTGAACTTAACCAAAAATCTAGCGATAGATTTGAGCTTTGCAACTCGTAAAGACAGAACGCTTTAGGTATAAAATTGTCTTTTATTAAAAAACAACCACTCCGTTTTAAAAACGATTCATTAATTAGGAATAAGAAGGATTTTTTGACGGAAAGCCTTTGAGCAATAACAAAATTATCTCTGTATGATTTATAAATTTCATGCTCAAACGATGAAATGAATCACTAAATGTTTGGATAGGTTAGCCTGCATTACACCCATTCACTATTTGTACTAACTACATTTTTTAAAAAAAGAAAAAGGATTTTACTCATAAAATAGTTGGTATAAAGAATTTTTACACTATCAACGTTCAAAAGTTAAACTCGGAAAATAATATTTCCATTTACTTGTTGCGAATCGACAGGTGTCAAACCTTATATACGTTGATCAACCAACTGGAACTGGTTTCAGTTATACTTCTGATGAAAGTGACATTCGACACAATGAGACTGGTGTAAGCAATGACCTTTATGATTTCCTACAGGTTTGTTCCCTTCACCTCTTCTCGGTATTTCTCAGACTCCACTTGTGAGATTACACCAGTATGTAATCCGTAAAAATACGATGTATTTTACGATATGACAGGCCTTCTTCAATGCTCATCCTGAGTATGTAAATAATGATTTCTACATTACTGGAGAATCATATGCTGGACATTATATTCCTGCATTTGCTTCTAGAGTTCATCAAGGAAACATAAAGAAAGAAGGAATTCACATAAACCTCAAGGTACTTTCTTTCCTATAACAAGTCGTTTTTTCGGGGTTTTTTTCGACTTGTTTTGGTTGGACAATATATATTTACATGCTACTTTGATCAGGGATTTGCT</genome_strand>
        <mrna_strand>AAAAATGTCTTCTTCATCTTCATTATTCCCTCTTCTCTTTGTTGCTATATTTCTTGTTTTATGTTCCCAAATTGCCCTTTCATTATCACCCAATTTTTTCTTACAATCTCATAATGATATTATTAGTCCAAAGAAACTTCAATTAACAATGGGTGAAAAATTGATTAGGCAACTTAATTTGTTCCCTAAACATGACATTAATATTGTTTCTTCAAAGGACAATAATTATGAAAATAAATTATTTGAGAAGAAATTGGATTTATCTTATCTTGGTGATTCTGGTGCCACTGTCCAAGACTTAGGTCATCATGCTGGTTATTTTCCTCTTATAAACACTAAATCTGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTCTATTTTTTCTTTGAATCAAGGAGTAACAAGAATGATCCAGTAGTGATATGGTTAACAGGAGGTCCAGGATGTAGCAGTGAATTGGCATTATTTTATGAAAATGGACCTTTTAAAATATCAAAAAATATGTCTCTTGTCTGGAATGATTTTGGTTGGGACAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAAACCTTATATACGTTGATCAACCAACTGGAACTGGTTTCAGTTATACTTCTGATGAAAGTGACATTCGACACAATGAGACTGGTGTAAGCAATGACCTTTATGATTTCCTACAG.....................................................................................................GCCTTCTTCAATGCTCATCCTGAGTATGTAAATAATGATTTCTACATTACTGGAGAATCATATGCTGGACATTATATTCCTGCATTTGCTTCTAGAGTTCATCAAGGAAACATAAAGAAAGAAGGAATTCACATAAACCTCAAG...........................................................................................GGATTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554582" ref_strand="+" ref_description="SGN-E554582 [cTSC-4-M11]">
      <seq>aaatgtcttcttcatcttcattattccctcttctctttgttgctatatttcttgttttatgttcccaaattgccctttcattatcacccaattttttcttacaatctcataatgatattattagtccaaagaaacttcaattaacaatgggtgaaaaattgattaggcaacttaatttgttccctaaacatgacattaatattgtttcttcaaaggacaataattatgaaaataaattatttgagaagaaattggatttatcttatcttggtgattctggtgccactgtccaagacttaggtcatcatgctggttattttcctcttataaacactaaatctgcaaggatgttctattttttctttgaatcaaggagtaacaagaatgatccagtagtgatatggttaacaggaggtccaggatgtagcagtgaattggcattattttatgaaaatggaccttttaaaatatcaaaaaatatgtctcttgtctggaatgattttggttgggacaaggtgtcaaaccttatatacgttgatcaaccaactggaactggtttcagttatacttctgatgaaagtgacattcgacacaatgagactggtgtaagcaatgacctttatgatttcctacaggccttcttcaatgctcatcctgagtatgtaaataatgatttctacattactggagaatcatatgctggacattatattcctgcatttgcttctagagttcatcaaggaaacataaagaaagaaggaattcacataaacctcaagggatttgctataggtaatggcctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="51517" stop="54809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51817" g_stop="52162" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52163" i_stop="52872" i_length="710">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52873" g_stop="53041" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="515" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53042" i_stop="54028" i_length="987">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54029" g_stop="54148" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="635" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54149" i_stop="54249" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54250" g_stop="54393" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="779" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54394" i_stop="54484" i_length="91">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54485" g_stop="54509" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="780" r_stop="804" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E554582" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51817" e_stop="52162"/>
          <exon e_start="52873" e_stop="53041"/>
          <exon e_start="54029" e_stop="54148"/>
          <exon e_start="54250" e_stop="54393"/>
          <exon e_start="54485" e_stop="54509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTCTTCTTCATCTTCATTATTCCCTCTTCTCTTTGTTGCTATATTTCTTGTTTTATGTTCCCAAATTGCCCTTTCATTATCACCCAATTTTTTCTTACAATCTCATAATGATATTATTAGTCCAAAGAAACTTCAATTAACAATGGGTGAAAAATTGATTAGGCAACTTAATTTGTTCCCTAAACATGACATTAATATTGTTTCTTCAAAGGACAATAATTATGAAAATAAATTATTTGAGAAGAAATTGGATTTATCTTATCTTGGTGATTCTGGTGCCACTGTCCAAGACTTAGGTCATCATGCTGGTTATTTTCCTCTTATAAACACTAAATCTGCAAGGTTTGATTATTTATCTTACATAATTATATATTATTGACTTTATTTATTAGAACAACGGTAAAATTCTTATCATGTATATAGTTACGAGTTTGGACCGTGAAATTAGCGGTTATTAGATTATATTCCTCGAAATGCGATCTTTTTTTATGAACCTTGTGTGAGTGTGTAATATTTCGTACTCCGAACTATCCCTTTTTCTTTTTTGGTTTAAAAGTAGGAGCCTTGAAGCAATGATATAAATTGTTTCTCGCTTGACCTATAGGTTATTGGTTTGAGTCATGTTGCGTCAAGATAGACTGATTAAATTACGTCCTTGTGGGATGCGGTCATTTCCCAGACCTTGTTACGGACAATATTTCATGCATTTTATTTGTTCTTTTTTTTAAAAGAAGAATCTTGAAAGAACGATCTAAGTAATTAGTATATTCCTATTAAAGTAGGATAATTAAATTACATCTCCTTATGACGATGTAATTCTTTTTTGAACCCAATATGAATGTGAAATACTTCCTCTACTAAGCAATCTTTTTTTTTTTTTGCTTCGAAAGGAGAGTCTAAGAGTACATATTAAAGTTATCTTTGTCTGACCATTAATATACAACTTACATTAAATACTCTTGAGGCATAGTCTTTCTTCAAATCTACATAAATACGAGATACTTCATGTACCAGACTATTCTTTTTAATTAATGTAATTTATTTTGTTGTAGGATGTTCTATTTTTTCTTTGAATCAAGGAGTAACAAGAATGATCCAGTAGTGATATGGTTAACAGGAGGTCCAGGATGTAGCAGTGAATTGGCATTATTTTATGAAAATGGACCTTTTAAAATATCAAAAAATATGTCTCTTGTCTGGAATGATTTTGGTTGGGACAAGGTAATTTTTTTGGATTTTTCCTAAATTAATACATGATTTTATTATCAACAAATTCATTTCAATTTTTTTTTTGAATATCATGATTATTTTATTCGCAACTTGTTAATTATTGATTGAATTTTTTTTCTTCCATTCATGTAAAGTCATTTTTTTTTATAGCTGAGAAATTCGTTTGTAATCCGCTTTTTAATCAATCACACCTTTCATGCGAAGTCAATTTTTTTTCACCAACTAACTAATCTTCTTTGACTGTTTTTGCTATTCATTAGTTGTGACTTAAATTAGAAAGAAAAAAATTTCAAAAATCTTGAAATCTAAAGTAGTTCAACTATTGTTATTGACTTATATGGTTTTTTTTTTTTTTTTTATATATATATAGTGCTCTATTTTCATTTAATTGTCTCCACAAAAATTAAAAAGCAAATGCTTTTTTGTCAAAGAATCCTTTTTTTAATGGTCAAGAATAAATAGTCTTGAATTAATCATAAAGTTATCTCTAAAAACAGAAAATGACATCGTATACTTAGAAGACTAAATTTTATATTTTATGTGTTAATATATCCTCTCAATTTCTTTATATATTTGAACTTAACCAAAAATCTAGCGATAGATTTGAGCTTTGCAACTCGTAAAGACAGAACGCTTTAGGTATAAAATTGTCTTTTATTAAAAAACAACCACTCCGTTTTAAAAACGATTCATTAATTAGGAATAAGAAGGATTTTTTGACGGAAAGCCTTTGAGCAATAACAAAATTATCTCTGTATGATTTATAAATTTCATGCTCAAACGATGAAATGAATCACTAAATGTTTGGATAGGTTAGCCTGCATTACACCCATTCACTATTTGTACTAACTACATTTTTTAAAAAAAGAAAAAGGATTTTACTCATAAAATAGTTGGTATAAAGAATTTTTACACTATCAACGTTCAAAAGTTAAACTCGGAAAATAATATTTCCATTTACTTGTTGCGAATCGACAGGTGTCAAACCTTATATACGTTGATCAACCAACTGGAACTGGTTTCAGTTATACTTCTGATGAAAGTGACATTCGACACAATGAGACTGGTGTAAGCAATGACCTTTATGATTTCCTACAGGTTTGTTCCCTTCACCTCTTCTCGGTATTTCTCAGACTCCACTTGTGAGATTACACCAGTATGTAATCCGTAAAAATACGATGTATTTTACGATATGACAGGCCTTCTTCAATGCTCATCCTGAGTATGTAAATAATGATTTCTACATTACTGGAGAATCATATGCTGGACATTATATTCCTGCATTTGCTTCTAGAGTTCATCAAGGAAACATAAAGAAAGAAGGAATTCACATAAACCTCAAGGTACTTTCTTTCCTATAACAAGTCGTTTTTTCGGGGTTTTTTTCGACTTGTTTTGGTTGGACAATATATATTTACATGCTACTTTGATCAGGGATTTGCTATAGGTAATGGCCTCA</genome_strand>
        <mrna_strand>AAATGTCTTCTTCATCTTCATTATTCCCTCTTCTCTTTGTTGCTATATTTCTTGTTTTATGTTCCCAAATTGCCCTTTCATTATCACCCAATTTTTTCTTACAATCTCATAATGATATTATTAGTCCAAAGAAACTTCAATTAACAATGGGTGAAAAATTGATTAGGCAACTTAATTTGTTCCCTAAACATGACATTAATATTGTTTCTTCAAAGGACAATAATTATGAAAATAAATTATTTGAGAAGAAATTGGATTTATCTTATCTTGGTGATTCTGGTGCCACTGTCCAAGACTTAGGTCATCATGCTGGTTATTTTCCTCTTATAAACACTAAATCTGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTCTATTTTTTCTTTGAATCAAGGAGTAACAAGAATGATCCAGTAGTGATATGGTTAACAGGAGGTCCAGGATGTAGCAGTGAATTGGCATTATTTTATGAAAATGGACCTTTTAAAATATCAAAAAATATGTCTCTTGTCTGGAATGATTTTGGTTGGGACAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAAACCTTATATACGTTGATCAACCAACTGGAACTGGTTTCAGTTATACTTCTGATGAAAGTGACATTCGACACAATGAGACTGGTGTAAGCAATGACCTTTATGATTTCCTACAG.....................................................................................................GCCTTCTTCAATGCTCATCCTGAGTATGTAAATAATGATTTCTACATTACTGGAGAATCATATGCTGGACATTATATTCCTGCATTTGCTTCTAGAGTTCATCAAGGAAACATAAAGAAAGAAGGAATTCACATAAACCTCAAG...........................................................................................GGATTTGCTATAGGTAATGGCCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554042" ref_strand="+" ref_description="SGN-E554042 [cTSC-3-A23]">
      <seq>ttcattattccctcttctctttgttgctatatttcttgttttatgttcccaaattgccctttcattatcacccaattttttcttacaatctcataatgatattattagtccaaagaaacttcaattaacaatgggtgaaaaattgattaggcaacttaatttgttccctaaacatgacattaatattgtttcttcaaaggacaataattatgaaaataaattatttgagaagaaattggatttatcttatcttggtgattctggtgccactgtccaagacttaggtcatcatgctggttattttcctcttataaacactaaatctgcaaggatgttctattttttctttgaatcaaggagtaacaagaatgatccagtagtgatatggttaacaggaggtccaggatgtagcagtgaattggcattattttatgaaaatggaccttttaaaatatcaaaaaatatgtctcttgtctggaatgattttggttgggacaaggtgtcaaaccttatatacgttgatcaaccaactggaactggtttcagttatacttctgatgaaagtgacattcgacacaatgagactggtgtaagcaatgacctttatgatttcctacaggccttcttcaatgctcatcctgagtatgtaaataatgatttctacattactggagaatcatatgctggacattatattcctgcatttgcttctagagttcatcaaggaaacataaagaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="51533" stop="54672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51833" g_stop="52162" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52163" i_stop="52872" i_length="710">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52873" g_stop="53041" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="499" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53042" i_stop="54028" i_length="987">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54029" g_stop="54148" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="619" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54149" i_stop="54249" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54250" g_stop="54372" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="742" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E554042" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51833" e_stop="52162"/>
          <exon e_start="52873" e_stop="53041"/>
          <exon e_start="54029" e_stop="54148"/>
          <exon e_start="54250" e_stop="54372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTATTCCCTCTTCTCTTTGTTGCTATATTTCTTGTTTTATGTTCCCAAATTGCCCTTTCATTATCACCCAATTTTTTCTTACAATCTCATAATGATATTATTAGTCCAAAGAAACTTCAATTAACAATGGGTGAAAAATTGATTAGGCAACTTAATTTGTTCCCTAAACATGACATTAATATTGTTTCTTCAAAGGACAATAATTATGAAAATAAATTATTTGAGAAGAAATTGGATTTATCTTATCTTGGTGATTCTGGTGCCACTGTCCAAGACTTAGGTCATCATGCTGGTTATTTTCCTCTTATAAACACTAAATCTGCAAGGTTTGATTATTTATCTTACATAATTATATATTATTGACTTTATTTATTAGAACAACGGTAAAATTCTTATCATGTATATAGTTACGAGTTTGGACCGTGAAATTAGCGGTTATTAGATTATATTCCTCGAAATGCGATCTTTTTTTATGAACCTTGTGTGAGTGTGTAATATTTCGTACTCCGAACTATCCCTTTTTCTTTTTTGGTTTAAAAGTAGGAGCCTTGAAGCAATGATATAAATTGTTTCTCGCTTGACCTATAGGTTATTGGTTTGAGTCATGTTGCGTCAAGATAGACTGATTAAATTACGTCCTTGTGGGATGCGGTCATTTCCCAGACCTTGTTACGGACAATATTTCATGCATTTTATTTGTTCTTTTTTTTAAAAGAAGAATCTTGAAAGAACGATCTAAGTAATTAGTATATTCCTATTAAAGTAGGATAATTAAATTACATCTCCTTATGACGATGTAATTCTTTTTTGAACCCAATATGAATGTGAAATACTTCCTCTACTAAGCAATCTTTTTTTTTTTTTGCTTCGAAAGGAGAGTCTAAGAGTACATATTAAAGTTATCTTTGTCTGACCATTAATATACAACTTACATTAAATACTCTTGAGGCATAGTCTTTCTTCAAATCTACATAAATACGAGATACTTCATGTACCAGACTATTCTTTTTAATTAATGTAATTTATTTTGTTGTAGGATGTTCTATTTTTTCTTTGAATCAAGGAGTAACAAGAATGATCCAGTAGTGATATGGTTAACAGGAGGTCCAGGATGTAGCAGTGAATTGGCATTATTTTATGAAAATGGACCTTTTAAAATATCAAAAAATATGTCTCTTGTCTGGAATGATTTTGGTTGGGACAAGGTAATTTTTTTGGATTTTTCCTAAATTAATACATGATTTTATTATCAACAAATTCATTTCAATTTTTTTTTTGAATATCATGATTATTTTATTCGCAACTTGTTAATTATTGATTGAATTTTTTTTCTTCCATTCATGTAAAGTCATTTTTTTTTATAGCTGAGAAATTCGTTTGTAATCCGCTTTTTAATCAATCACACCTTTCATGCGAAGTCAATTTTTTTTCACCAACTAACTAATCTTCTTTGACTGTTTTTGCTATTCATTAGTTGTGACTTAAATTAGAAAGAAAAAAATTTCAAAAATCTTGAAATCTAAAGTAGTTCAACTATTGTTATTGACTTATATGGTTTTTTTTTTTTTTTTTATATATATATAGTGCTCTATTTTCATTTAATTGTCTCCACAAAAATTAAAAAGCAAATGCTTTTTTGTCAAAGAATCCTTTTTTTAATGGTCAAGAATAAATAGTCTTGAATTAATCATAAAGTTATCTCTAAAAACAGAAAATGACATCGTATACTTAGAAGACTAAATTTTATATTTTATGTGTTAATATATCCTCTCAATTTCTTTATATATTTGAACTTAACCAAAAATCTAGCGATAGATTTGAGCTTTGCAACTCGTAAAGACAGAACGCTTTAGGTATAAAATTGTCTTTTATTAAAAAACAACCACTCCGTTTTAAAAACGATTCATTAATTAGGAATAAGAAGGATTTTTTGACGGAAAGCCTTTGAGCAATAACAAAATTATCTCTGTATGATTTATAAATTTCATGCTCAAACGATGAAATGAATCACTAAATGTTTGGATAGGTTAGCCTGCATTACACCCATTCACTATTTGTACTAACTACATTTTTTAAAAAAAGAAAAAGGATTTTACTCATAAAATAGTTGGTATAAAGAATTTTTACACTATCAACGTTCAAAAGTTAAACTCGGAAAATAATATTTCCATTTACTTGTTGCGAATCGACAGGTGTCAAACCTTATATACGTTGATCAACCAACTGGAACTGGTTTCAGTTATACTTCTGATGAAAGTGACATTCGACACAATGAGACTGGTGTAAGCAATGACCTTTATGATTTCCTACAGGTTTGTTCCCTTCACCTCTTCTCGGTATTTCTCAGACTCCACTTGTGAGATTACACCAGTATGTAATCCGTAAAAATACGATGTATTTTACGATATGACAGGCCTTCTTCAATGCTCATCCTGAGTATGTAAATAATGATTTCTACATTACTGGAGAATCATATGCTGGACATTATATTCCTGCATTTGCTTCTAGAGTTCATCAAGGAAACATAAAGAAAGAA</genome_strand>
        <mrna_strand>TTCATTATTCCCTCTTCTCTTTGTTGCTATATTTCTTGTTTTATGTTCCCAAATTGCCCTTTCATTATCACCCAATTTTTTCTTACAATCTCATAATGATATTATTAGTCCAAAGAAACTTCAATTAACAATGGGTGAAAAATTGATTAGGCAACTTAATTTGTTCCCTAAACATGACATTAATATTGTTTCTTCAAAGGACAATAATTATGAAAATAAATTATTTGAGAAGAAATTGGATTTATCTTATCTTGGTGATTCTGGTGCCACTGTCCAAGACTTAGGTCATCATGCTGGTTATTTTCCTCTTATAAACACTAAATCTGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTCTATTTTTTCTTTGAATCAAGGAGTAACAAGAATGATCCAGTAGTGATATGGTTAACAGGAGGTCCAGGATGTAGCAGTGAATTGGCATTATTTTATGAAAATGGACCTTTTAAAATATCAAAAAATATGTCTCTTGTCTGGAATGATTTTGGTTGGGACAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAAACCTTATATACGTTGATCAACCAACTGGAACTGGTTTCAGTTATACTTCTGATGAAAGTGACATTCGACACAATGAGACTGGTGTAAGCAATGACCTTTATGATTTCCTACAG.....................................................................................................GCCTTCTTCAATGCTCATCCTGAGTATGTAAATAATGATTTCTACATTACTGGAGAATCATATGCTGGACATTATATTCCTGCATTTGCTTCTAGAGTTCATCAAGGAAACATAAAGAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554164" ref_strand="+" ref_description="SGN-E554164 [cTSC-3-G7]">
      <seq>attagtccaaagaaacttcaattaacaatgggtgaaaaattgattaggcaacttaatttgttccctaaacatgacattaatattgtttcttcaaaggacaataattatgaaaataaattatttgagaagaaattggatttatcttatcttggtgattctggtgccactgtccaagacttaggtcatcatgctggttattttcctcttataaacactaaatctgcaaggatgttctattttttctttgaatcaaggagtaacaagaatgatccagtagtgatatggttaataggaggtccaggatgtagcagtgaattggcattattttatgaaaatggaccttttaaaatatcaaaaaatatgtctcttgtctggaatgattttggttgggacaaggtgtcaaaccttatatacgttgatcaaccaactggaactggtttcagttatacttctgatgaaagtgacattcgacacaatgagactggtgtaagcaatgacctttatgatttcctacaggccttcttcaatgctcatcctgagtatgtaaataatgatttctacattactggagaatcatatgctggacattatattcctgcatttgcttctagagttcatcaaggaaacataaagaaagaaggaattcacataaacctcaagggatttgctataggtaatggcctcaccaacccagaaatccagtataaagcttacaccgactattctttggatatgaaaattgatcaatcaaaccgactacgattatataaatcaattatatccaacatgtcaacaagaaattaaactttgtgcaagtggtagtgaagatgcatgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="51636" stop="55074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51936" g_stop="52162" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52163" i_stop="52872" i_length="710">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52873" g_stop="53041" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="396" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53042" i_stop="54028" i_length="987">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54029" g_stop="54148" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="516" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54149" i_stop="54249" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54250" g_stop="54393" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="660" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54394" i_stop="54484" i_length="91">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54485" g_stop="54635" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="812" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54636" i_stop="54748" i_length="113">
            <donor d_prob="0.619" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54749" g_stop="54774" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="813" r_stop="838" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E554164" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51936" e_stop="52162"/>
          <exon e_start="52873" e_stop="53041"/>
          <exon e_start="54029" e_stop="54148"/>
          <exon e_start="54250" e_stop="54393"/>
          <exon e_start="54485" e_stop="54635"/>
          <exon e_start="54749" e_stop="54774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGTCCAAAGAAACTTCAATTAACAATGGGTGAAAAATTGATTAGGCAACTTAATTTGTTCCCTAAACATGACATTAATATTGTTTCTTCAAAGGACAATAATTATGAAAATAAATTATTTGAGAAGAAATTGGATTTATCTTATCTTGGTGATTCTGGTGCCACTGTCCAAGACTTAGGTCATCATGCTGGTTATTTTCCTCTTATAAACACTAAATCTGCAAGGTTTGATTATTTATCTTACATAATTATATATTATTGACTTTATTTATTAGAACAACGGTAAAATTCTTATCATGTATATAGTTACGAGTTTGGACCGTGAAATTAGCGGTTATTAGATTATATTCCTCGAAATGCGATCTTTTTTTATGAACCTTGTGTGAGTGTGTAATATTTCGTACTCCGAACTATCCCTTTTTCTTTTTTGGTTTAAAAGTAGGAGCCTTGAAGCAATGATATAAATTGTTTCTCGCTTGACCTATAGGTTATTGGTTTGAGTCATGTTGCGTCAAGATAGACTGATTAAATTACGTCCTTGTGGGATGCGGTCATTTCCCAGACCTTGTTACGGACAATATTTCATGCATTTTATTTGTTCTTTTTTTTAAAAGAAGAATCTTGAAAGAACGATCTAAGTAATTAGTATATTCCTATTAAAGTAGGATAATTAAATTACATCTCCTTATGACGATGTAATTCTTTTTTGAACCCAATATGAATGTGAAATACTTCCTCTACTAAGCAATCTTTTTTTTTTTTTGCTTCGAAAGGAGAGTCTAAGAGTACATATTAAAGTTATCTTTGTCTGACCATTAATATACAACTTACATTAAATACTCTTGAGGCATAGTCTTTCTTCAAATCTACATAAATACGAGATACTTCATGTACCAGACTATTCTTTTTAATTAATGTAATTTATTTTGTTGTAGGATGTTCTATTTTTTCTTTGAATCAAGGAGTAACAAGAATGATCCAGTAGTGATATGGTTAACAGGAGGTCCAGGATGTAGCAGTGAATTGGCATTATTTTATGAAAATGGACCTTTTAAAATATCAAAAAATATGTCTCTTGTCTGGAATGATTTTGGTTGGGACAAGGTAATTTTTTTGGATTTTTCCTAAATTAATACATGATTTTATTATCAACAAATTCATTTCAATTTTTTTTTTGAATATCATGATTATTTTATTCGCAACTTGTTAATTATTGATTGAATTTTTTTTCTTCCATTCATGTAAAGTCATTTTTTTTTATAGCTGAGAAATTCGTTTGTAATCCGCTTTTTAATCAATCACACCTTTCATGCGAAGTCAATTTTTTTTCACCAACTAACTAATCTTCTTTGACTGTTTTTGCTATTCATTAGTTGTGACTTAAATTAGAAAGAAAAAAATTTCAAAAATCTTGAAATCTAAAGTAGTTCAACTATTGTTATTGACTTATATGGTTTTTTTTTTTTTTTTTATATATATATAGTGCTCTATTTTCATTTAATTGTCTCCACAAAAATTAAAAAGCAAATGCTTTTTTGTCAAAGAATCCTTTTTTTAATGGTCAAGAATAAATAGTCTTGAATTAATCATAAAGTTATCTCTAAAAACAGAAAATGACATCGTATACTTAGAAGACTAAATTTTATATTTTATGTGTTAATATATCCTCTCAATTTCTTTATATATTTGAACTTAACCAAAAATCTAGCGATAGATTTGAGCTTTGCAACTCGTAAAGACAGAACGCTTTAGGTATAAAATTGTCTTTTATTAAAAAACAACCACTCCGTTTTAAAAACGATTCATTAATTAGGAATAAGAAGGATTTTTTGACGGAAAGCCTTTGAGCAATAACAAAATTATCTCTGTATGATTTATAAATTTCATGCTCAAACGATGAAATGAATCACTAAATGTTTGGATAGGTTAGCCTGCATTACACCCATTCACTATTTGTACTAACTACATTTTTTAAAAAAAGAAAAAGGATTTTACTCATAAAATAGTTGGTATAAAGAATTTTTACACTATCAACGTTCAAAAGTTAAACTCGGAAAATAATATTTCCATTTACTTGTTGCGAATCGACAGGTGTCAAACCTTATATACGTTGATCAACCAACTGGAACTGGTTTCAGTTATACTTCTGATGAAAGTGACATTCGACACAATGAGACTGGTGTAAGCAATGACCTTTATGATTTCCTACAGGTTTGTTCCCTTCACCTCTTCTCGGTATTTCTCAGACTCCACTTGTGAGATTACACCAGTATGTAATCCGTAAAAATACGATGTATTTTACGATATGACAGGCCTTCTTCAATGCTCATCCTGAGTATGTAAATAATGATTTCTACATTACTGGAGAATCATATGCTGGACATTATATTCCTGCATTTGCTTCTAGAGTTCATCAAGGAAACATAAAGAAAGAAGGAATTCACATAAACCTCAAGGTACTTTCTTTCCTATAACAAGTCGTTTTTTCGGGGTTTTTTTCGACTTGTTTTGGTTGGACAATATATATTTACATGCTACTTTGATCAGGGATTTGCTATAGGTAATGGCCTCACCAACCCAGAAATCCAGTATAAAGCTTACACCGACTATTCTTTGGATATG-AAATTGATCAATCAAACCGACTACGATTATATAAATCAATTATATCCAACATGTCAACAAGAAATTAAACTTTGTGGTAAGTCTTTATCCTACATAACACTAAAACAAGTTAACTTCGAAAAAGAGAAAGAAAAGAGCCTTAGAATTATCTCGATATTCTTGACATGATTTGTGTGAAAATATTGGCAGCAAGTGGTAGTGAAGATGCATGTATG</genome_strand>
        <mrna_strand>ATTAGTCCAAAGAAACTTCAATTAACAATGGGTGAAAAATTGATTAGGCAACTTAATTTGTTCCCTAAACATGACATTAATATTGTTTCTTCAAAGGACAATAATTATGAAAATAAATTATTTGAGAAGAAATTGGATTTATCTTATCTTGGTGATTCTGGTGCCACTGTCCAAGACTTAGGTCATCATGCTGGTTATTTTCCTCTTATAAACACTAAATCTGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTCTATTTTTTCTTTGAATCAAGGAGTAACAAGAATGATCCAGTAGTGATATGGTTAATAGGAGGTCCAGGATGTAGCAGTGAATTGGCATTATTTTATGAAAATGGACCTTTTAAAATATCAAAAAATATGTCTCTTGTCTGGAATGATTTTGGTTGGGACAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAAACCTTATATACGTTGATCAACCAACTGGAACTGGTTTCAGTTATACTTCTGATGAAAGTGACATTCGACACAATGAGACTGGTGTAAGCAATGACCTTTATGATTTCCTACAG.....................................................................................................GCCTTCTTCAATGCTCATCCTGAGTATGTAAATAATGATTTCTACATTACTGGAGAATCATATGCTGGACATTATATTCCTGCATTTGCTTCTAGAGTTCATCAAGGAAACATAAAGAAAGAAGGAATTCACATAAACCTCAAG...........................................................................................GGATTTGCTATAGGTAATGGCCTCACCAACCCAGAAATCCAGTATAAAGCTTACACCGACTATTCTTTGGATATGAAAATTGATCAATCAAACCGACTACGATTATATAAATCAATTATATCCAACATGTCAACAAGAAATTAAACTTTGTG.................................................................................................................CAAGTGGTAGTGAAGATGCATGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546092" ref_strand="+" ref_description="SGN-E546092 [TUS-69-E12](-)">
      <seq>acgtggattctgagaaataccgacaaggggtgaagggaacaaacctgtaggaaatcataaaggtcattgcttacaccagtctcattgtgtcgaatgtcactttcatcagaaggataactgaaaccagttccagttggttcatcccggtatataaggtttgacacctgtcgattggcaacaagtaaaagggacacgttatatttcgtttaacttctgaacaatgatggtgtaaaaattttttataccaactattttatgagtaaaatcctcgttcttttttcaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="54492" stop="53092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54192" g_stop="53906" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="287" polyA_stop="308"/>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E546092" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54192" e_stop="53906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGGAGTCTGAGAAATACCGAGAAGAGGTGAAGGGAACAAACCTGTAGGAAATCATAAAGGTCATTGCTTACACCAGTCTCATTGTGTCGAATGTCACTTTCATCAGAAGTATAACTGAAACCAGTTCCAGTTGGTTGATCAACGTATATAAGGTTTGACACCTGTCGATTCGCAACAAGT-AAATGGAAATATTATTTTCCGAGTTTAACTTTTGAACGTTGATAGTGTAAAAATTCTTTATACCAACTATTTTATGAGTAAAATCCTTTTTCTTTTTTTAAAAA</genome_strand>
        <mrna_strand>ACGTGGATTCTGAGAAATACCGACAAGGGGTGAAGGGAACAAACCTGTAGGAAATCATAAAGGTCATTGCTTACACCAGTCTCATTGTGTCGAATGTCACTTTCATCAGAAGGATAACTGAAACCAGTTCCAGTTGGTTCATCCCGGTATATAAGGTTTGACACCTGTCGATTGGCAACAAGTAAAAGGGACACGTTATATTTC--GTTTAACTTCTGAACAATGATGGTGTAAAAATTTTTTATACCAACTATTTTATGAGTAAAATCCTCGTTCTTTTTTCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464044" ref_strand="+" ref_description="SGN-E464044 [cPRO-16-F4]">
      <seq>aaaccttatatacgttgatcaaccaactggaactggtttcagttatacttctgatcaaagtgacattcgtcacaatgaaactggtgtaagcaatgacctttatgatttcctacaggccttcttcaatgctcatcctgagtatgtaaacaatgatttctacattactggagaatcatatgctggacattatattcctgcatttgcttctcgagttcatcaaggaaacataaagaaagaaggaattcacataaacctcaagggttttgctattggtaatggcctcaccaacccagaaatccagtataaagcttacactgactattctttggatatgaaattgatcaatcaaacagactacgatcatataaataaattatatccaaaatgtcaacaagaaattaagctttgtggaagtggtagtgaagatgcatgtatgaagggatttagtgattgcacactcattttcgacaatatattggacattgctggcgacataaattactacgatatccggaagacctgcaatggtagcctctgctatgacttctcgagaatggaaacttacctcaatgataaccaagttaaggaagcccttggtgttcccactggtattgatttttgtctcgtgtagttcttcagtttatcgggcgatgatgaaggactggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="53734" stop="55421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54034" g_stop="54148" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54149" i_stop="54249" i_length="101">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.939" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54250" g_stop="54393" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="259" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54394" i_stop="54484" i_length="91">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54485" g_stop="54635" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="410" r_length="151" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54636" i_stop="54748" i_length="113">
            <donor d_prob="0.619" d_score="0.92"/>
            <acceptor a_prob="0.951" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54749" g_stop="54837" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="499" r_length="89" r_score="0.910"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54838" i_stop="54954" i_length="117">
            <donor d_prob="0.973" d_score="0.90"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54955" g_stop="55121" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="667" r_length="168" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E464044" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E464044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54034" e_stop="54148"/>
          <exon e_start="54250" e_stop="54393"/>
          <exon e_start="54485" e_stop="54635"/>
          <exon e_start="54749" e_stop="54837"/>
          <exon e_start="54955" e_stop="55121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTTATATACGTTGATCAACCAACTGGAACTGGTTTCAGTTATACTTCTGATGAAAGTGACATTCGACACAATGAGACTGGTGTAAGCAATGACCTTTATGATTTCCTACAGGTTTGTTCCCTTCACCTCTTCTCGGTATTTCTCAGACTCCACTTGTGAGATTACACCAGTATGTAATCCGTAAAAATACGATGTATTTTACGATATGACAGGCCTTCTTCAATGCTCATCCTGAGTATGTAAATAATGATTTCTACATTACTGGAGAATCATATGCTGGACATTATATTCCTGCATTTGCTTCTAGAGTTCATCAAGGAAACATAAAGAAAGAAGGAATTCACATAAACCTCAAGGTACTTTCTTTCCTATAACAAGTCGTTTTTTCGGGGTTTTTTTCGACTTGTTTTGGTTGGACAATATATATTTACATGCTACTTTGATCAGGGATTTGCTATAGGTAATGGCCTCACCAACCCAGAAATCCAGTATAAAGCTTACACCGACTATTCTTTGGATATGAAATTGATCAATCAAACCGACTACGATTATATAAATCAATTATATCCAACATGTCAACAAGAAATTAAACTTTGTGGTAAGTCTTTATCCTACATAACACTAAAACAAGTTAACTTCGAAAAAGAGAAAGAAAAGAGCCTTAGAATTATCTCGATATTCTTGACATGATTTGTGTGAAAATATTGGCAGCAAGTGGTAGTGAAGATGCATGTATGAAGGGATTTAACGATTGCAACCTCATTTTCAACAGTATAATGGACATTGCTGGCGACATAAATGTAAGAACGTGCAACTTCTTTCAGTTTTTTTTTTCTAACGAGACAAGGGTGTCATATAACTATGAGCAAATATGTTTTTATAACAATCTGATGGATTTGTGATTTTTTCACCTGTAGTACTATGATATCCGGAAGACCTGCAATGGTAGCCTCTGCTATGACTTCTCGAGAATGGAAACTTACCTCAACGATGACCAAGTTAAGGAAGCCCTCGGTGTTCCCACCAGTATTGA-CTTTGTCTCGTGTAGTTCTTCCGTTTATCAGGCGATGAGGATGGACTGGAT</genome_strand>
        <mrna_strand>AAACCTTATATACGTTGATCAACCAACTGGAACTGGTTTCAGTTATACTTCTGATCAAAGTGACATTCGTCACAATGAAACTGGTGTAAGCAATGACCTTTATGATTTCCTACAG.....................................................................................................GCCTTCTTCAATGCTCATCCTGAGTATGTAAACAATGATTTCTACATTACTGGAGAATCATATGCTGGACATTATATTCCTGCATTTGCTTCTCGAGTTCATCAAGGAAACATAAAGAAAGAAGGAATTCACATAAACCTCAAG...........................................................................................GGTTTTGCTATTGGTAATGGCCTCACCAACCCAGAAATCCAGTATAAAGCTTACACTGACTATTCTTTGGATATGAAATTGATCAATCAAACAGACTACGATCATATAAATAAATTATATCCAAAATGTCAACAAGAAATTAAGCTTTGTG.................................................................................................................GAAGTGGTAGTGAAGATGCATGTATGAAGGGATTTAGTGATTGCACACTCATTTTCGACAATATATTGGACATTGCTGGCGACATAAAT.....................................................................................................................TACTACGATATCCGGAAGACCTGCAATGGTAGCCTCTGCTATGACTTCTCGAGAATGGAAACTTACCTCAATGATAACCAAGTTAAGGAAGCCCTTGGTGTTCCCACTGGTATTGATTTTTGTCTCGTGTAGTTCTTCAGTTTATCGGGCGATGATGAAGGACTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458346" ref_strand="+" ref_description="SGN-E458346 [cPRO-5-M18]">
      <seq>aaaccttatatacgttgatcaaccaactggaactggtttcagttatacttctgatcaaagtgacattcgtcacaatgaaactggtgtaagcaatgacctttatgatttcctacaggccttcttcaatgctcatcctgagtatgtaaacaatgatttctacattactggagaatcatatgctggacattatattcctgcatttgcttctcgagttcatcaaggaaacataaagaaagaaggaattcacataaacctcaagggttttgctattggtaatggcctcaccaacccagaaatccagtataaagcttacactgactattctttggatatgaaattgatcaatcaaacagactacgatcatataaataaattatatccaaaatgtcaacaagaaattaagctttgtggaagtggtagtgaagatgcatgtatgaagggatttagtgattgcacactcattttcgacaatatattggacattgctggcgacataaattactacgatatccggaagacctgcaatggtagcctctgctatgacttctcgagaatggaaacttacctcaatgataac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="53734" stop="55332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54034" g_stop="54148" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54149" i_stop="54249" i_length="101">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.939" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54250" g_stop="54393" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="259" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54394" i_stop="54484" i_length="91">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54485" g_stop="54635" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="410" r_length="151" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54636" i_stop="54748" i_length="113">
            <donor d_prob="0.619" d_score="0.92"/>
            <acceptor a_prob="0.951" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54749" g_stop="54837" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="499" r_length="89" r_score="0.910"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54838" i_stop="54954" i_length="117">
            <donor d_prob="0.973" d_score="0.90"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54955" g_stop="55032" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="577" r_length="78" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E458346" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54034" e_stop="54148"/>
          <exon e_start="54250" e_stop="54393"/>
          <exon e_start="54485" e_stop="54635"/>
          <exon e_start="54749" e_stop="54837"/>
          <exon e_start="54955" e_stop="55032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTTATATACGTTGATCAACCAACTGGAACTGGTTTCAGTTATACTTCTGATGAAAGTGACATTCGACACAATGAGACTGGTGTAAGCAATGACCTTTATGATTTCCTACAGGTTTGTTCCCTTCACCTCTTCTCGGTATTTCTCAGACTCCACTTGTGAGATTACACCAGTATGTAATCCGTAAAAATACGATGTATTTTACGATATGACAGGCCTTCTTCAATGCTCATCCTGAGTATGTAAATAATGATTTCTACATTACTGGAGAATCATATGCTGGACATTATATTCCTGCATTTGCTTCTAGAGTTCATCAAGGAAACATAAAGAAAGAAGGAATTCACATAAACCTCAAGGTACTTTCTTTCCTATAACAAGTCGTTTTTTCGGGGTTTTTTTCGACTTGTTTTGGTTGGACAATATATATTTACATGCTACTTTGATCAGGGATTTGCTATAGGTAATGGCCTCACCAACCCAGAAATCCAGTATAAAGCTTACACCGACTATTCTTTGGATATGAAATTGATCAATCAAACCGACTACGATTATATAAATCAATTATATCCAACATGTCAACAAGAAATTAAACTTTGTGGTAAGTCTTTATCCTACATAACACTAAAACAAGTTAACTTCGAAAAAGAGAAAGAAAAGAGCCTTAGAATTATCTCGATATTCTTGACATGATTTGTGTGAAAATATTGGCAGCAAGTGGTAGTGAAGATGCATGTATGAAGGGATTTAACGATTGCAACCTCATTTTCAACAGTATAATGGACATTGCTGGCGACATAAATGTAAGAACGTGCAACTTCTTTCAGTTTTTTTTTTCTAACGAGACAAGGGTGTCATATAACTATGAGCAAATATGTTTTTATAACAATCTGATGGATTTGTGATTTTTTCACCTGTAGTACTATGATATCCGGAAGACCTGCAATGGTAGCCTCTGCTATGACTTCTCGAGAATGGAAACTTACCTCAACGATGAC</genome_strand>
        <mrna_strand>AAACCTTATATACGTTGATCAACCAACTGGAACTGGTTTCAGTTATACTTCTGATCAAAGTGACATTCGTCACAATGAAACTGGTGTAAGCAATGACCTTTATGATTTCCTACAG.....................................................................................................GCCTTCTTCAATGCTCATCCTGAGTATGTAAACAATGATTTCTACATTACTGGAGAATCATATGCTGGACATTATATTCCTGCATTTGCTTCTCGAGTTCATCAAGGAAACATAAAGAAAGAAGGAATTCACATAAACCTCAAG...........................................................................................GGTTTTGCTATTGGTAATGGCCTCACCAACCCAGAAATCCAGTATAAAGCTTACACTGACTATTCTTTGGATATGAAATTGATCAATCAAACAGACTACGATCATATAAATAAATTATATCCAAAATGTCAACAAGAAATTAAGCTTTGTG.................................................................................................................GAAGTGGTAGTGAAGATGCATGTATGAAGGGATTTAGTGATTGCACACTCATTTTCGACAATATATTGGACATTGCTGGCGACATAAAT.....................................................................................................................TACTACGATATCCGGAAGACCTGCAATGGTAGCCTCTGCTATGACTTCTCGAGAATGGAAACTTACCTCAATGATAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458122" ref_strand="+" ref_description="SGN-E458122 [cPRO-4-B18]">
      <seq>ggaagacctgcaatggtagcctctgctatgacttctcgagaatggaaacttacctcaatgataaccaagttaaggaagcccttggtgttcccactggtattgattttgtctcgtgtagttcttcagtttatcgggcgatgatgaaggactggatgaagaatcttgaagtcggtattcctcaacttcttgaggatggtatcaatctactcatttatgctggagaatatgaccttatctgcaactggattggtaagcttcattcacctattaaagaaaagcgccaaaaaacttctaaaaaggccgttgggggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="54668" stop="55578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54968" g_stop="55278" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E458122" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54968" e_stop="55278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGACCTGCAATGGTAGCCTCTGCTATGACTTCTCGAGAATGGAAACTTACCTCAACGATGACCAAGTTAAGGAAGCCCTCGGTGTTCCCACCAGTATTGACTTTGTCTCGTGTAGTTCTTCCGTTTATCAGGCGATGAGGATGGACTGGATGAAGAATCTTGAAGTCGGTATTCCTCAACTTCTTGAGGATGGTATCAATCTACTCATTTATGCTGGAGAATATGACCTTATCTGCAACTGGCTTGGTAAGCTTCATTCACCTATAACAGAAAAGCG-CAAAAAAATTCTAAAAGGTCCGTTAGGGGTT</genome_strand>
        <mrna_strand>GGAAGACCTGCAATGGTAGCCTCTGCTATGACTTCTCGAGAATGGAAACTTACCTCAATGATAACCAAGTTAAGGAAGCCCTTGGTGTTCCCACTGGTATTGATTTTGTCTCGTGTAGTTCTTCAGTTTATCGGGCGATGATGAAGGACTGGATGAAGAATCTTGAAGTCGGTATTCCTCAACTTCTTGAGGATGGTATCAATCTACTCATTTATGCTGGAGAATATGACCTTATCTGCAACTGGATTGGTAAGCTTCATTCACCTATTAAAGAAAAGCGCCAAAAAACTTCTAAAAAGGCCGTTGGGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556495" ref_strand="+" ref_description="SGN-E556495 [cTSD-3-K23]">
      <seq>aatggaaacttacctcaccgatgaggaggttaaggaagccctcggtgttcccaccagtattgactttgtctcgtggagctcttccgtttaacaggcgatgaggatggactggatgaagaatcttgaagtcggtattcctcaacttcttgaggatggtatcaatctactcatttatgctggagaatatgaccttatctgcaactggcttgggaactcaaattgggtgcatgcagtagaatggtctgggcagaaaggctttgaggctgcaccatctgtttctttcacagtagatggtgaggagaaaggtgttcaaaagaagtatggaccactgatattcctcaaggtccacgatgcaggtcatatggtgccgatggaccaacctaaggcagcacttgaaatgcttcagcggtggactcatggcaacttgtgaagaatcaatttatgaaccacacatactgaaacagattaacaatttaccagctttatgatatcaccaaacatagaaaatcatgtagatacatttcaccctttcaggtgaatgttgttcttctaagataattgggttaagcattataacatatagtgaaccacactgtttgcccttaaaaaaaaaaaaaaaaaaaaaaanannnnnnc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="54708" stop="56252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55008" g_stop="55216" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55217" i_stop="55553" i_length="337">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55554" g_stop="55948" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="604" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="605" polyA_stop="629"/>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E556495" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55008" e_stop="55216"/>
          <exon e_start="55554" e_stop="55948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAAACTTACCTCAACGATGACCAAGTTAAGGAAGCCCTCGGTGTTCCCACCAGTATTGACTTTGTCTCGTGTAGTTCTTCCGTTTATCAGGCGATGAGGATGGACTGGATGAAGAATCTTGAAGTCGGTATTCCTCAACTTCTTGAGGATGGTATCAATCTACTCATTTATGCTGGAGAATATGACCTTATCTGCAACTGGCTTGGTAAGCTTCATTCACCTATAACAGAAAAGCGCAAAAAAATTCTAAAAGGTCCGTTAGGGGTTTTAAGTGCAAAATAAACCGTAGGCTTTAGTCCAAACTTAATACTAATAAGCATGAATGGCAAAGTGAAATATCAATTAGTGTCGCCTCTTCAGAAGAGGCTCATTGGCGAGGAAAAGTATGCCTTACAACCTTGATGACGACGCTGAAGTGCACATTAAGTGAGGCACAACGCTCAACACGCTTTTGAGCCTCGCTTAAGGGCTTAAGCACGCTTTTGACAACACTGATTAATCTAAACAGTGTCGAGTAAACTATTGTTTCTTGAAATGGACAGGGAACTCAAATTGGGTGCATGCAGTAGAATGGTCTGGGCAGAAAGGCTTTGAGGCTGCACCATCTGTTTCTTTCACAGTAGATGGTGAGGAGAAAGGTGTTCAAAAGAAGTATGGACCACTGATATTCCTCAAGGTCCACGATGCAGGTCATATGGTGCCGATGGACCAACCTAAGGCAGCACTTGAAATGCTTCAGCGGTGGACTCATGGCAACTTGTGAAGAATCAATTTATGAACCACACATACTGAAACAGATTAACAATTTACCAGCTTTATGATATCACCAAACATAGAAAATCATGTAGATACATTTCACCCTTTCAGGTGAATGTTGTTCTTCTAAGATAATTGGGTTAAGCATTATAACATATAGTGAACCACACTGTTTGCCCTT</genome_strand>
        <mrna_strand>AATGGAAACTTACCTCACCGATGAGGAGGTTAAGGAAGCCCTCGGTGTTCCCACCAGTATTGACTTTGTCTCGTGGAGCTCTTCCGTTTAACAGGCGATGAGGATGGACTGGATGAAGAATCTTGAAGTCGGTATTCCTCAACTTCTTGAGGATGGTATCAATCTACTCATTTATGCTGGAGAATATGACCTTATCTGCAACTGGCTTG.................................................................................................................................................................................................................................................................................................................................................GGAACTCAAATTGGGTGCATGCAGTAGAATGGTCTGGGCAGAAAGGCTTTGAGGCTGCACCATCTGTTTCTTTCACAGTAGATGGTGAGGAGAAAGGTGTTCAAAAGAAGTATGGACCACTGATATTCCTCAAGGTCCACGATGCAGGTCATATGGTGCCGATGGACCAACCTAAGGCAGCACTTGAAATGCTTCAGCGGTGGACTCATGGCAACTTGTGAAGAATCAATTTATGAACCACACATACTGAAACAGATTAACAATTTACCAGCTTTATGATATCACCAAACATAGAAAATCATGTAGATACATTTCACCCTTTCAGGTGAATGTTGTTCTTCTAAGATAATTGGGTTAAGCATTATAACATATAGTGAACCACACTGTTTGCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555343" ref_strand="-" ref_description="SGN-E555343 [cTSC-1-O3]">
      <seq>aatggaaacttacctcaacgatgaccaagttaaggaagccctcggtgttcccaccagtattgactttgtctcgtgtagttcttccgtttatcaggcgatgaggatggactggatgaagaatcttgaagtcggtattcctcaacttcttgaggatggtatcaatctactcatttatgctggagaatatgaccttatctgcaactggcttgggaactcaaattgggtgcatgcagtagaatggtctgggcagaaaggctttgaggctgcaccatctgtttctttcacagtagatggtgaggagaaaggtgttcaaaagaagtatggaccactgatattcctcaaggtccacgatgcaggtcatatggtgccgatggaccaacctaaggcagcacttgaaatgcttcagcggtggactcatggcaacttgtgaagaatcaatttatgaaccacacatactgaaacagattaacaatttaccagctttatgatatcaccaaacatagaaaatcatgtagatacatttcaccctttcaggtgaatgttgttcttctaagataattgggttaagcattataacatatagtgaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="54708" stop="56233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55008" g_stop="55216" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55217" i_stop="55553" i_length="337">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55554" g_stop="55933" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="589" r_length="380" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E555343" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555343" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="55008" e_stop="55216"/>
          <exon e_start="55554" e_stop="55933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAAACTTACCTCAACGATGACCAAGTTAAGGAAGCCCTCGGTGTTCCCACCAGTATTGACTTTGTCTCGTGTAGTTCTTCCGTTTATCAGGCGATGAGGATGGACTGGATGAAGAATCTTGAAGTCGGTATTCCTCAACTTCTTGAGGATGGTATCAATCTACTCATTTATGCTGGAGAATATGACCTTATCTGCAACTGGCTTGGTAAGCTTCATTCACCTATAACAGAAAAGCGCAAAAAAATTCTAAAAGGTCCGTTAGGGGTTTTAAGTGCAAAATAAACCGTAGGCTTTAGTCCAAACTTAATACTAATAAGCATGAATGGCAAAGTGAAATATCAATTAGTGTCGCCTCTTCAGAAGAGGCTCATTGGCGAGGAAAAGTATGCCTTACAACCTTGATGACGACGCTGAAGTGCACATTAAGTGAGGCACAACGCTCAACACGCTTTTGAGCCTCGCTTAAGGGCTTAAGCACGCTTTTGACAACACTGATTAATCTAAACAGTGTCGAGTAAACTATTGTTTCTTGAAATGGACAGGGAACTCAAATTGGGTGCATGCAGTAGAATGGTCTGGGCAGAAAGGCTTTGAGGCTGCACCATCTGTTTCTTTCACAGTAGATGGTGAGGAGAAAGGTGTTCAAAAGAAGTATGGACCACTGATATTCCTCAAGGTCCACGATGCAGGTCATATGGTGCCGATGGACCAACCTAAGGCAGCACTTGAAATGCTTCAGCGGTGGACTCATGGCAACTTGTGAAGAATCAATTTATGAACCACACATACTGAAACAGATTAACAATTTACCAGCTTTATGATATCACCAAACATAGAAAATCATGTAGATACATTTCACCCTTTCAGGTGAATGTTGTTCTTCTAAGATAATTGGGTTAAGCATTATAACATATAGTGAACC</genome_strand>
        <mrna_strand>AATGGAAACTTACCTCAACGATGACCAAGTTAAGGAAGCCCTCGGTGTTCCCACCAGTATTGACTTTGTCTCGTGTAGTTCTTCCGTTTATCAGGCGATGAGGATGGACTGGATGAAGAATCTTGAAGTCGGTATTCCTCAACTTCTTGAGGATGGTATCAATCTACTCATTTATGCTGGAGAATATGACCTTATCTGCAACTGGCTTG.................................................................................................................................................................................................................................................................................................................................................GGAACTCAAATTGGGTGCATGCAGTAGAATGGTCTGGGCAGAAAGGCTTTGAGGCTGCACCATCTGTTTCTTTCACAGTAGATGGTGAGGAGAAAGGTGTTCAAAAGAAGTATGGACCACTGATATTCCTCAAGGTCCACGATGCAGGTCATATGGTGCCGATGGACCAACCTAAGGCAGCACTTGAAATGCTTCAGCGGTGGACTCATGGCAACTTGTGAAGAATCAATTTATGAACCACACATACTGAAACAGATTAACAATTTACCAGCTTTATGATATCACCAAACATAGAAAATCATGTAGATACATTTCACCCTTTCAGGTGAATGTTGTTCTTCTAAGATAATTGGGTTAAGCATTATAACATATAGTGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553214" ref_strand="+" ref_description="SGN-E553214 [cTSB-2-P17]">
      <seq>caggcgatgaggatggactggatgaagaatcttgaagtcggtattcctcaacttcttgaggatggtatcaatctactcatttatgctggagaatatgaccttatctgcaactggcttgggaactcaaattgggtgcatgcagtagaatggtctgggcagaaaggctttgaggctgcaccatctgtttctttcacagtagatggtgaggagaaaggtgttcaaaagaagtatggaccactgatattcctcaaggtccacgatgcaggtcatatggtgccgatggaccaacctaaggcagcacttgaaatgcttcagcggtggactcatggcaacttgtgaagaatcaatttatgaaccacacatactgaaacagattaacaatttaccagctttatgatatcaccaaacatagaaaatcatgtagatacatttcaccctttcaggtgaatgttgttcttctaagataattgggttaagcattataacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="54799" stop="56226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55099" g_stop="55216" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55217" i_stop="55553" i_length="337">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55554" g_stop="55921" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="486" r_length="368" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="487" polyA_stop="524"/>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E553214" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55099" e_stop="55216"/>
          <exon e_start="55554" e_stop="55921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGCGATGAGGATGGACTGGATGAAGAATCTTGAAGTCGGTATTCCTCAACTTCTTGAGGATGGTATCAATCTACTCATTTATGCTGGAGAATATGACCTTATCTGCAACTGGCTTGGTAAGCTTCATTCACCTATAACAGAAAAGCGCAAAAAAATTCTAAAAGGTCCGTTAGGGGTTTTAAGTGCAAAATAAACCGTAGGCTTTAGTCCAAACTTAATACTAATAAGCATGAATGGCAAAGTGAAATATCAATTAGTGTCGCCTCTTCAGAAGAGGCTCATTGGCGAGGAAAAGTATGCCTTACAACCTTGATGACGACGCTGAAGTGCACATTAAGTGAGGCACAACGCTCAACACGCTTTTGAGCCTCGCTTAAGGGCTTAAGCACGCTTTTGACAACACTGATTAATCTAAACAGTGTCGAGTAAACTATTGTTTCTTGAAATGGACAGGGAACTCAAATTGGGTGCATGCAGTAGAATGGTCTGGGCAGAAAGGCTTTGAGGCTGCACCATCTGTTTCTTTCACAGTAGATGGTGAGGAGAAAGGTGTTCAAAAGAAGTATGGACCACTGATATTCCTCAAGGTCCACGATGCAGGTCATATGGTGCCGATGGACCAACCTAAGGCAGCACTTGAAATGCTTCAGCGGTGGACTCATGGCAACTTGTGAAGAATCAATTTATGAACCACACATACTGAAACAGATTAACAATTTACCAGCTTTATGATATCACCAAACATAGAAAATCATGTAGATACATTTCACCCTTTCAGGTGAATGTTGTTCTTCTAAGATAATTGGGTTAAGCATTATAAC</genome_strand>
        <mrna_strand>CAGGCGATGAGGATGGACTGGATGAAGAATCTTGAAGTCGGTATTCCTCAACTTCTTGAGGATGGTATCAATCTACTCATTTATGCTGGAGAATATGACCTTATCTGCAACTGGCTTG.................................................................................................................................................................................................................................................................................................................................................GGAACTCAAATTGGGTGCATGCAGTAGAATGGTCTGGGCAGAAAGGCTTTGAGGCTGCACCATCTGTTTCTTTCACAGTAGATGGTGAGGAGAAAGGTGTTCAAAAGAAGTATGGACCACTGATATTCCTCAAGGTCCACGATGCAGGTCATATGGTGCCGATGGACCAACCTAAGGCAGCACTTGAAATGCTTCAGCGGTGGACTCATGGCAACTTGTGAAGAATCAATTTATGAACCACACATACTGAAACAGATTAACAATTTACCAGCTTTATGATATCACCAAACATAGAAAATCATGTAGATACATTTCACCCTTTCAGGTGAATGTTGTTCTTCTAAGATAATTGGGTTAAGCATTATAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553525" ref_strand="-" ref_description="SGN-E553525 [cTSC-1-G15]">
      <seq>atgaggatggactggatgaagaatcttgaagtcggtattcctcaacttcttgaggatggtatcaatctactcatttatgctggagaatatgaccttatctgcaactggcttgggaactcaaattgggtgcatgcagtagaatggtctgggcagaaaggctttgaggctgcaccatctgtttctttcacagtagatggtgaggagaaaggtgttcaaaagaagtatggaccactgatattcctcaaggtccacgatgcaggtcatatggtgccgatggaccaacctaaggcagcacttgaaatgcttcagcggtggactcatggcaacttgtgaagaatcaatttatgaaccacacatactgaaacagattaacaatttaccagctttatgatatcaccaaacatagaaaatcatgtagatacatttcaccctttcaggtgaatgttgttcttctaagataattgggttaagcattataacatatagtgaaccacactgtttgcccttataaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="54805" stop="56252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55105" g_stop="55216" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55217" i_stop="55553" i_length="337">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55554" g_stop="55957" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="516" r_length="404" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E553525" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553525" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="55105" e_stop="55216"/>
          <exon e_start="55554" e_stop="55957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGGATGGACTGGATGAAGAATCTTGAAGTCGGTATTCCTCAACTTCTTGAGGATGGTATCAATCTACTCATTTATGCTGGAGAATATGACCTTATCTGCAACTGGCTTGGTAAGCTTCATTCACCTATAACAGAAAAGCGCAAAAAAATTCTAAAAGGTCCGTTAGGGGTTTTAAGTGCAAAATAAACCGTAGGCTTTAGTCCAAACTTAATACTAATAAGCATGAATGGCAAAGTGAAATATCAATTAGTGTCGCCTCTTCAGAAGAGGCTCATTGGCGAGGAAAAGTATGCCTTACAACCTTGATGACGACGCTGAAGTGCACATTAAGTGAGGCACAACGCTCAACACGCTTTTGAGCCTCGCTTAAGGGCTTAAGCACGCTTTTGACAACACTGATTAATCTAAACAGTGTCGAGTAAACTATTGTTTCTTGAAATGGACAGGGAACTCAAATTGGGTGCATGCAGTAGAATGGTCTGGGCAGAAAGGCTTTGAGGCTGCACCATCTGTTTCTTTCACAGTAGATGGTGAGGAGAAAGGTGTTCAAAAGAAGTATGGACCACTGATATTCCTCAAGGTCCACGATGCAGGTCATATGGTGCCGATGGACCAACCTAAGGCAGCACTTGAAATGCTTCAGCGGTGGACTCATGGCAACTTGTGAAGAATCAATTTATGAACCACACATACTGAAACAGATTAACAATTTACCAGCTTTATGATATCACCAAACATAGAAAATCATGTAGATACATTTCACCCTTTCAGGTGAATGTTGTTCTTCTAAGATAATTGGGTTAAGCATTATAACATATAGTGAACCACACTGTTTGCCCTTATAATTTGT</genome_strand>
        <mrna_strand>ATGAGGATGGACTGGATGAAGAATCTTGAAGTCGGTATTCCTCAACTTCTTGAGGATGGTATCAATCTACTCATTTATGCTGGAGAATATGACCTTATCTGCAACTGGCTTG.................................................................................................................................................................................................................................................................................................................................................GGAACTCAAATTGGGTGCATGCAGTAGAATGGTCTGGGCAGAAAGGCTTTGAGGCTGCACCATCTGTTTCTTTCACAGTAGATGGTGAGGAGAAAGGTGTTCAAAAGAAGTATGGACCACTGATATTCCTCAAGGTCCACGATGCAGGTCATATGGTGCCGATGGACCAACCTAAGGCAGCACTTGAAATGCTTCAGCGGTGGACTCATGGCAACTTGTGAAGAATCAATTTATGAACCACACATACTGAAACAGATTAACAATTTACCAGCTTTATGATATCACCAAACATAGAAAATCATGTAGATACATTTCACCCTTTCAGGTGAATGTTGTTCTTCTAAGATAATTGGGTTAAGCATTATAACATATAGTGAACCACACTGTTTGCCCTTATAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429867" ref_strand="+" ref_description="SGN-E429867 [STM-52-D8]">
      <seq>cacttttttttttttaagagtaaacagtgaggttcactatatgttataatgcttaatccaatatcttagaagaacaacattcacctgaaagggtgaaatgtatctacatgattttctatgttttgctgatattataaagctggtaaattgttaatctgtttcagtatgtgtggttcttaaattgattcttcacaagttgccatgagtccacctctgaagcatttcaagtgctgccttaggttggtccatcggcaccatatgacctgcatcgtagaccttgaggaacatcagtggtccatacttcttttgaacacctttctcctcaccgtctactgtgaaagaaacagacggtgcagcctcaaagcctttctgcccagaccattctactgcatgcacccaatttgagttccctgtccatttcaagaaacaatagtttactcgacactgtttagatttatcagtgttgtcaaaagcgcgtaagcccttaagcgaggctcaaaacgtgttgagcgttgtgcctcgcttaatgtgcgcttcagcatcgtcatcaaggttctaaggcatacttttccttgccaatgagcctcgtctgaagaagcgacactaattgatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="56252" stop="55045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55963" g_stop="55345" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E429867" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55963" e_stop="55345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATAACAAATTATAAGGGCAAACAGTGTGGTTCACTATATGTTATAATGCTTAACCCAATTATCTTAGAAGAACAACATTCACCTGAAAGGGTGAAATGTATCTACATGATTTTCTATG-TTTGGTGATATCATAAAGCTGGTAAATTGTTAATCTGTTTCAGTATGTGTGGTTCATAAATTGATTCTTCACAAGTTGCCATGAGTCCACCGCTGAAGCATTTCAAGTGCTGCCTTAGGTTGGTCCATCGGCACCATATGACCTGCATCGTGGACCTTGAGGAATATCAGTGGTCCATACTTCTTTTGAACACCTTTCTCCTCACCATCTACTGTGAAAGAAACAGATGGTGCAGCCTCAAAGCCTTTCTGCCCAGACCATTCTACTGCATGCACCCAATTTGAGTTCCCTGTCCATTTCAAGAAACAATAGTTTACTCGACACTGTTTAGATTAATCAGTGTTGTCAAAAGCGTGCTTAAGCCCTTAAGCGAGGCTCAAAAGCGTGTTGAGCGTTGTGCCTCACTTAATGTGCACTTCAGCGTCGTCATCAAGGTTGTAAGGCATACTTTTCCTCGCCAATGAGCCTCTTCTGAAGAGGCGACACTAATTGATATTT</genome_strand>
        <mrna_strand>CACTTTTTTTTTTTTAAGAGTAAACAGTGAGGTTCACTATATGTTATAATGCTTAATCCAA-TATCTTAGAAGAACAACATTCACCTGAAAGGGTGAAATGTATCTACATGATTTTCTATGTTTTGCTGATATTATAAAGCTGGTAAATTGTTAATCTGTTTCAGTATGTGTGGTTCTTAAATTGATTCTTCACAAGTTGCCATGAGTCCACCTCTGAAGCATTTCAAGTGCTGCCTTAGGTTGGTCCATCGGCACCATATGACCTGCATCGTAGACCTTGAGGAACATCAGTGGTCCATACTTCTTTTGAACACCTTTCTCCTCACCGTCTACTGTGAAAGAAACAGACGGTGCAGCCTCAAAGCCTTTCTGCCCAGACCATTCTACTGCATGCACCCAATTTGAGTTCCCTGTCCATTTCAAGAAACAATAGTTTACTCGACACTGTTTAGATTTATCAGTGTTGTCAAAAGC--GCGTAAGCCCTTAAGCGAGGCTCAAAA-CGTGTTGAGCGTTGTGCCTCGCTTAATGTGCGCTTCAGCATCGTCATCAAGGTTCTAAGGCATACTTTTCCTTGCCAATGAGCCTCGTCTGAAGAAGCGACACTAATTGATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732070" ref_strand="+" ref_description="SGN-E732070 [LB01AG09]">
      <seq>caactctcaacacgcttttgagcctcgcttaagggcttaagcacgcttttgacaacactgattaatctaaacagtgtcgagtaaactattgtttcttgaaatggacagggaactcaaattgggtgcatgcagtagaatggtctgggcagaaaggctttgaggctgcaccatctgtttctttcacagtagatggtgaggagaaaggtgttcaaaagaagtatggaccactgatattcctcaaggtccacgatgcaggtcatatggtgccgatggaccaacctaaggcagcacttgaaatgcttcagcggtggactcatggcaacttgtgaagaatcaatttatgaaccacacatactgaaacagattaacaatttaccagctttatgatatcaccaaacatagaaaatcatgtagatacatttcaccctttcaggtgaatgttgttcttctaagataattgggttaagcattataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="55146" stop="56226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55446" g_stop="55928" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E732070" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55446" e_stop="55928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGCTCAACACGCTTTTGAGCCTCGCTTAAGGGCTTAAGCACGCTTTTGACAACACTGATTAATCTAAACAGTGTCGAGTAAACTATTGTTTCTTGAAATGGACAGGGAACTCAAATTGGGTGCATGCAGTAGAATGGTCTGGGCAGAAAGGCTTTGAGGCTGCACCATCTGTTTCTTTCACAGTAGATGGTGAGGAGAAAGGTGTTCAAAAGAAGTATGGACCACTGATATTCCTCAAGGTCCACGATGCAGGTCATATGGTGCCGATGGACCAACCTAAGGCAGCACTTGAAATGCTTCAGCGGTGGACTCATGGCAACTTGTGAAGAATCAATTTATGAACCACACATACTGAAACAGATTAACAATTTACCAGCTTTATGATATCACCAAACATAGAAAATCATGTAGATACATTTCACCCTTTCAGGTGAATGTTGTTCTTCTAAGATAATTGGGTTAAGCATTATAACATATAGT</genome_strand>
        <mrna_strand>CAACTCTCAACACGCTTTTGAGCCTCGCTTAAGGGCTTAAGCACGCTTTTGACAACACTGATTAATCTAAACAGTGTCGAGTAAACTATTGTTTCTTGAAATGGACAGGGAACTCAAATTGGGTGCATGCAGTAGAATGGTCTGGGCAGAAAGGCTTTGAGGCTGCACCATCTGTTTCTTTCACAGTAGATGGTGAGGAGAAAGGTGTTCAAAAGAAGTATGGACCACTGATATTCCTCAAGGTCCACGATGCAGGTCATATGGTGCCGATGGACCAACCTAAGGCAGCACTTGAAATGCTTCAGCGGTGGACTCATGGCAACTTGTGAAGAATCAATTTATGAACCACACATACTGAAACAGATTAACAATTTACCAGCTTTATGATATCACCAAACATAGAAAATCATGTAGATACATTTCACCCTTTCAGGTGAATGTTGTTCTTCTAAGATAATTGGGTTAAGCATTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E614958" ref_strand="+" ref_description="SGN-E614958 [64751]">
      <seq>gacaggttttcagcctgtgatcgagaccttgagggaactatatcgagcaagaggcggttcatagctattgcattcaggtgtttgtgtgtcaaatgttcttttgagcagccttaatgtttgtgtacatctccatcgttccattgacaaaaagaacatgaatgcatcttttgttaaatattagttttctcctttaaacactactgtgagcttagaagaccatgggatccgcttccattattatagttatctatcttatgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="57346" stop="56487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57046" g_stop="56782" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E614958" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E614958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57046" e_stop="56782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGGTTTTCAGCCTGTGATCAAGACCTTGAGGGAACTATATCGAGCAAGAGGCGGTTCATAGCTATTGCATTCAGGTGTTTGTGTGTCAAATGTTCTTTTAAGCAGGCTTAATGTTTGTGTACATCACCATCGTTCCATTGACAAAAGGAACATGAATGCATCTTTTGTTAAATATTACTTTTCTCCTTTAAGCGTTACTCTTATTTTAGAAGACCATGGAGTCTGCTTCCATTATTATAGTTATCTATCTTATGAAAGCTTT</genome_strand>
        <mrna_strand>GACAGGTTTTCAGCCTGTGATCGAGACCTTGAGGGAACTATATCGAGCAAGAGGCGGTTCATAGCTATTGCATTCAGGTGTTTGTGTGTCAAATGTTCTTTTGAGCAGCCTTAATGTTTGTGTACATCTCCATCGTTCCATTGACAAAAAGAACATGAATGCATCTTTTGTTAAATATTAGTTTTCTCCTTTAAACACTACTGTGAGCTTAGAAGACCATGGGATCCGCTTCCATTATTATAGTTATCTATCTTATGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546093" ref_strand="+" ref_description="SGN-E546093 [TUS-69-E12]">
      <seq>atcaatctttcaccttccactgtacaattttcttgaacaaactgaatattctgaacaagaaaaactccatcaatgaatccagaaagctccaataacaacagccaaacaaaccctagaaaaagaccattagtagaagaacctaacaatgacaaacaaccaataacactaaattccatggtggtagccattgatcacaacaatctcttttacacagtttgttctatatgtgaaaagactctacctgacccttctccaaatacccatatccccaattcttcttcatcatcatcttcaatacccttttgcagaaattgcaacttcaactctgcttcttctggttccaaacgcctctttcgtgttcttatgtctatagctactgagaaaagagtggttgtggtgataatgtttgatagggcagctagggttttatttggttgttctgctgatgagttctttgattttgccaagactcacccttttgctgctgcagctgccggtaatgctttggagggagagatgttgaagatcaccttgtccaaaccaaagaatggaaatgcacgacatctacgagtggtatctgtttttccattgcggacaggttttcagcctgtgatcaagaccttgagggaacaatatcgagcaagatgcggttcatagctattgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="59866" stop="56673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59566" g_stop="59195" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59194" i_stop="59077" i_length="118">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59076" g_stop="58956" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="484" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58955" i_stop="57156" i_length="1800">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57155" g_stop="56973" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="667" r_length="183" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E546093" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59566" e_stop="59195"/>
          <exon e_start="59076" e_stop="58956"/>
          <exon e_start="57155" e_stop="56973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATCTTTCTCCTTCCACTGTACCATTTTCTTGAACAAACTGAATATTCTGAACAAGAAAAACTCCATCAATGAATCCAGAAAGCTCCAATAACAACAGCCAAACGAACCCTAGAAAAAGACCATTAGTAGAAGAACCTAGCAATGACAAACAACCAATAACACTAAATTCCATGGTGGTAGCCATTGATCACAACAATCTCTTTTACACAGTTTGTTCTATATGTGAAAAGACTCTACCTGACCCTTCTCCAAATACCCAAATCCCCAATTCTTCTTCTTCTTCTTCATCATCATCTTCAATACCCTTTTGCAAAAATTGCAACTTTAACTCTGCTTCTTCTGGTTCCAAACGCCTCTTTCGTGTTCTTGTATGTGAATTATTCTTTTTCTTTTCGTGTTGTTATCTGCAATGGTGATGCTTTTTTTGTTGGTTTTTGTCAAAGATTTGATTTTTTTTTGTGGGTGATTTTGGGTTTTTTTTTGCAGATGTCGATAGCTACTGAGAAAAGAGTGGTTGTGGTGATAATGTTTGATAGGGCAGCTAGGGTTTTGTTTGGTTGTTCTGCTGATGAGTTCTTTGATTTTGCCAAGACTCACCCTTTTGCTGGTAACTTTGATTAATCTCCCTTTTTATCTTTTAAAGTTGCACTGATGCATCATTTAGGAGATGTGTGAGAGGCTGGTTATAGCGGTTTTTAGGAGAGGTAGAAATAGGCTTAAGAAGAACTAGGGAGGTGATTAGATAGAATATAACACATATTTTGCTTACTACGACATGACCCTACACAAGGAGCGGTAGAAGTAGTCTTAAGAAGAACTAGGGAGGTGATTAGATAGAATATAACACATTTTACTTACTACGACATGACCCTACACAAGGAGAGGTAGAAGTAGGCTTAAGAAGAACTAGGGAGGTGATTAGAAAGAAGTAAGAACATGACACATAGTTTGCTTACTACGACATGACCCTACACAAGGAGAGCTGGAGAGGTAGAAGTAGGCGTAAGAAGAACTAGGGAGGTGATTATAAAGAACATGACACATAGTTTGCTTACTCCAACATGACCCTACACAAGGAGAGGTGGAAGTAGGATTAAGAAGGACTAGGGAGGTGATAAGAGAGAACATGACGCATATTTTGCTTACTACGGCATGACCCTACAAAGGAAGGTATGAAAGGCGAGAATTAGGTTAGAAGGGTAGTGAGTAGTCGAGAGATTTTCTATAGTAGGTTTTAGACGAGGTGAAAGTATGTTTTAGAAGAACTGAGAAAGGTGATTAGACAAAACGTGACATATTTTTAGCTTATTGAAGATTTGGGAAGGTATGGAGGTCAAGTATTAGGCTAGAAGGGTAAGTAATCGAGTGTTGTCGTACTTTTATGTTGTTGAGAAATGGGCTAGTCTACTCTCCTCATTTAGTAGTATTAGTTAGTATACCCAATGGGATTTTGCATTGGTATGTTGTTGTTACTACTTCCTGTTGTTTATTTTGTATTGTTTCTCTTGCTATTTTGTTATCCTTGTTTTCTTTTCAATCTGGCTTTGATTTCACTTCTCTTAAGTGGGGAGGGTCTATCGGAAACAACCTCTCTACCTCACAAACAAGGTAGGGGTAAGATCTGCATACATCCTATCCTCCCCAGACTACACTTGTGGGTATGTGGTTTTACTTTTTATAATTGCATTTTTCCAGTTTGAAGTTTACAGTGGCAATTTCACTTATGCTTGAAACAAGTCAACGGTATTGTTTGCAGGATATTTTTGGCTGCTAAATGAGATGCTGTAGAGAGTATACTAAACATAATATGAAAGTCAGTTCCTAGCCCATTATAGTGAAATGCTGTTAGAGACAAGTTTGACTGTAGTAGTAAATGAAATCACACTTTTTATACTTCCCTCTGTCATCAACAAGAGTTATAAATTTTTCTTTCCTTTAGGAATTCTATGAAACAAAAAAAAATGAAAGAAGTAGGAGATAATGGGGTAATGTTTCTGTAGGAATTGAAAATTCTAATGTAACTTACTCCCTCTGTCCCAATTTATGGGATAACTCTTTTTATTTGGAGATGTCCCGAGATGGTTGACACTTGACGCTATTTTATTGCCACACGACTTTCTTGACTTTCAAGTTTTCTAATTTATTAATCTTATTCAAGTTTCATGTTTTTGTTGAAATGTTTCTCCATCTAACTATACTCCAACAATCATTTTATTATTTTCTTCTACTATTTCTAAATGTAATATATAAGTTCAATTAGTATCTTAACATTCTCATATTAAATGGAACAGAGAGTATTTGGTCATGGTCCATAAAAAATTTTCCAAGAATCTTATAATTGCATCTTATAGTGTTTTGCTGGGCCATATGAAGAGGATTCTGACTTTTTGAGAATTCTTTTATGCAGCTGCAGCTGCCGGTAATGCTTTGGAGGGAGAGATGTTGAAGATCACCTTGTCCAAACCAAAGAATGGAAATGCACGACATCTACGAGTGGTATCAGTTTTTCCATTGCGGACAGGTTTTCAGCCTGTGATCAAGACCTTGAGGGAACTATATCGAGCAAGAGGCGGTTCATAGCTATTGCATT</genome_strand>
        <mrna_strand>ATCAATCTTTCACCTTCCACTGTACAATTTTCTTGAACAAACTGAATATTCTGAACAAGAAAAACTCCATCAATGAATCCAGAAAGCTCCAATAACAACAGCCAAACAAACCCTAGAAAAAGACCATTAGTAGAAGAACCTAACAATGACAAACAACCAATAACACTAAATTCCATGGTGGTAGCCATTGATCACAACAATCTCTTTTACACAGTTTGTTCTATATGTGAAAAGACTCTACCTGACCCTTCTCCAAATACCCATATCCCCAA---------TTCTTCTTCATCATCATCTTCAATACCCTTTTGCAGAAATTGCAACTTCAACTCTGCTTCTTCTGGTTCCAAACGCCTCTTTCGTGTTCTT......................................................................................................................ATGTCTATAGCTACTGAGAAAAGAGTGGTTGTGGTGATAATGTTTGATAGGGCAGCTAGGGTTTTATTTGGTTGTTCTGCTGATGAGTTCTTTGATTTTGCCAAGACTCACCCTTTTGCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAGCTGCCGGTAATGCTTTGGAGGGAGAGATGTTGAAGATCACCTTGTCCAAACCAAAGAATGGAAATGCACGACATCTACGAGTGGTATCTGTTTTTCCATTGCGGACAGGTTTTCAGCCTGTGATCAAGACCTTGAGGGAACAATATCGAGCAAGATGCGGTTCATAGCTATTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359023" ref_strand="+" ref_description="SGN-E359023 [cLHT-11-G3]">
      <seq>aaagctccaataacaacagccaaacaaaccctagaaaaagaccattagtagaagaacctaaccaatgaccaaacaaccaataacactaaattccatggtggtagccattgatcacaacaatctcttttacacagtttgttctatatgtgaaaagactctacctgacccttctccaaatacccatatccccaattcttcttcatcatcatcttcaatacccttttgcagaaattgcaacttcaactctgcttcttctggttccaaacgcctctttcgtgctcttatgtctatagctactgagaaaagaagtggctggggtgataatgtttgatagggcagctagggttttatttggttgttctgctgatgaggtctttgattttgccaagactcacccttttgctgctgcagctgccggtaatgctttggagggagagatgttgaagatcaccttgtccaaaccaaagaatggaaatgcacgacatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="59784" stop="56773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59484" g_stop="59195" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59194" i_stop="59077" i_length="118">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59076" g_stop="58956" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="405" r_length="122" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58955" i_stop="57156" i_length="1800">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57155" g_stop="57073" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="488" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E359023" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59484" e_stop="59195"/>
          <exon e_start="59076" e_stop="58956"/>
          <exon e_start="57155" e_stop="57073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTCCAATAACAACAGCCAAACGAACCCTAGAAAAAGACCATTAGTAGAAGAACCT-AGCAATGA-CAAACAACCAATAACACTAAATTCCATGGTGGTAGCCATTGATCACAACAATCTCTTTTACACAGTTTGTTCTATATGTGAAAAGACTCTACCTGACCCTTCTCCAAATACCCAAATCCCCAATTCTTCTTCTTCTTCTTCATCATCATCTTCAATACCCTTTTGCAAAAATTGCAACTTTAACTCTGCTTCTTCTGGTTCCAAACGCCTCTTTCGTGTTCTTGTATGTGAATTATTCTTTTTCTTTTCGTGTTGTTATCTGCAATGGTGATGCTTTTTTTGTTGGTTTTTGTCAAAGATTTGATTTTTTTTTGTGGGTGATTTTGGGTTTTTTTTTGCAGATGTCGATAGCTACTGAGAAAAG-AGTGGTTGTGGTGATAATGTTTGATAGGGCAGCTAGGGTTTTGTTTGGTTGTTCTGCTGATGAGTTCTTTGATTTTGCCAAGACTCACCCTTTTGCTGGTAACTTTGATTAATCTCCCTTTTTATCTTTTAAAGTTGCACTGATGCATCATTTAGGAGATGTGTGAGAGGCTGGTTATAGCGGTTTTTAGGAGAGGTAGAAATAGGCTTAAGAAGAACTAGGGAGGTGATTAGATAGAATATAACACATATTTTGCTTACTACGACATGACCCTACACAAGGAGCGGTAGAAGTAGTCTTAAGAAGAACTAGGGAGGTGATTAGATAGAATATAACACATTTTACTTACTACGACATGACCCTACACAAGGAGAGGTAGAAGTAGGCTTAAGAAGAACTAGGGAGGTGATTAGAAAGAAGTAAGAACATGACACATAGTTTGCTTACTACGACATGACCCTACACAAGGAGAGCTGGAGAGGTAGAAGTAGGCGTAAGAAGAACTAGGGAGGTGATTATAAAGAACATGACACATAGTTTGCTTACTCCAACATGACCCTACACAAGGAGAGGTGGAAGTAGGATTAAGAAGGACTAGGGAGGTGATAAGAGAGAACATGACGCATATTTTGCTTACTACGGCATGACCCTACAAAGGAAGGTATGAAAGGCGAGAATTAGGTTAGAAGGGTAGTGAGTAGTCGAGAGATTTTCTATAGTAGGTTTTAGACGAGGTGAAAGTATGTTTTAGAAGAACTGAGAAAGGTGATTAGACAAAACGTGACATATTTTTAGCTTATTGAAGATTTGGGAAGGTATGGAGGTCAAGTATTAGGCTAGAAGGGTAAGTAATCGAGTGTTGTCGTACTTTTATGTTGTTGAGAAATGGGCTAGTCTACTCTCCTCATTTAGTAGTATTAGTTAGTATACCCAATGGGATTTTGCATTGGTATGTTGTTGTTACTACTTCCTGTTGTTTATTTTGTATTGTTTCTCTTGCTATTTTGTTATCCTTGTTTTCTTTTCAATCTGGCTTTGATTTCACTTCTCTTAAGTGGGGAGGGTCTATCGGAAACAACCTCTCTACCTCACAAACAAGGTAGGGGTAAGATCTGCATACATCCTATCCTCCCCAGACTACACTTGTGGGTATGTGGTTTTACTTTTTATAATTGCATTTTTCCAGTTTGAAGTTTACAGTGGCAATTTCACTTATGCTTGAAACAAGTCAACGGTATTGTTTGCAGGATATTTTTGGCTGCTAAATGAGATGCTGTAGAGAGTATACTAAACATAATATGAAAGTCAGTTCCTAGCCCATTATAGTGAAATGCTGTTAGAGACAAGTTTGACTGTAGTAGTAAATGAAATCACACTTTTTATACTTCCCTCTGTCATCAACAAGAGTTATAAATTTTTCTTTCCTTTAGGAATTCTATGAAACAAAAAAAAATGAAAGAAGTAGGAGATAATGGGGTAATGTTTCTGTAGGAATTGAAAATTCTAATGTAACTTACTCCCTCTGTCCCAATTTATGGGATAACTCTTTTTATTTGGAGATGTCCCGAGATGGTTGACACTTGACGCTATTTTATTGCCACACGACTTTCTTGACTTTCAAGTTTTCTAATTTATTAATCTTATTCAAGTTTCATGTTTTTGTTGAAATGTTTCTCCATCTAACTATACTCCAACAATCATTTTATTATTTTCTTCTACTATTTCTAAATGTAATATATAAGTTCAATTAGTATCTTAACATTCTCATATTAAATGGAACAGAGAGTATTTGGTCATGGTCCATAAAAAATTTTCCAAGAATCTTATAATTGCATCTTATAGTGTTTTGCTGGGCCATATGAAGAGGATTCTGACTTTTTGAGAATTCTTTTATGCAGCTGCAGCTGCCGGTAATGCTTTGGAGGGAGAGATGTTGAAGATCACCTTGTCCAAACCAAAGAATGGAAATGCACGACATCTA</genome_strand>
        <mrna_strand>AAAGCTCCAATAACAACAGCCAAACAAACCCTAGAAAAAGACCATTAGTAGAAGAACCTAACCAATGACCAAACAACCAATAACACTAAATTCCATGGTGGTAGCCATTGATCACAACAATCTCTTTTACACAGTTTGTTCTATATGTGAAAAGACTCTACCTGACCCTTCTCCAAATACCCATATCCCCAA---------TTCTTCTTCATCATCATCTTCAATACCCTTTTGCAGAAATTGCAACTTCAACTCTGCTTCTTCTGGTTCCAAACGCCTCTTTCGTGCTCTT......................................................................................................................ATGTCTATAGCTACTGAGAAAAGAAGTGGCTGGGGTGATAATGTTTGATAGGGCAGCTAGGGTTTTATTTGGTTGTTCTGCTGATGAGGTCTTTGATTTTGCCAAGACTCACCCTTTTGCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAGCTGCCGGTAATGCTTTGGAGGGAGAGATGTTGAAGATCACCTTGTCCAAACCAAAGAATGGAAATGCACGACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355736" ref_strand="+" ref_description="SGN-E355736 [cLHT-18-H9]">
      <seq>tcaatctttcaccttccactgggcaattttcttgaacaaactgaatattctgaacaagaaaaactccatcaatgaatccagaaagctccaataacaacagccaaacaaaccctagaaaaagaccattagtagaagaacctaacaatgacaaacaaccaataacactaaattccatggtggtagccattgatcacaacaatctcttttacacagtttgttctatatgtgaaaagactctacctgacccttctccaaatacccatatccccaattcttcttcatcatcatcttcaatacccttttgcagaaattgcaacttcaactctgcttcttctggttccaaacgcctctttcgtgttcttatgtctatagctactgagaaaagagtggttgtggtgataatgtttgatagggcagctagggttttatttggttgtactgctgatgagttctttgattttgccaagactcacccttttgctgctgcagctgccggtaatgctttggagggagagatgttgaagatcaccttgttcaaaccaaagaatggaaatgcacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="59865" stop="56779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59565" g_stop="59195" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59194" i_stop="59077" i_length="118">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59076" g_stop="58956" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="483" r_length="121" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58955" i_stop="57156" i_length="1800">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57155" g_stop="57079" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="560" r_length="77" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E355736" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59565" e_stop="59195"/>
          <exon e_start="59076" e_stop="58956"/>
          <exon e_start="57155" e_stop="57079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCTTTCTCCTTCCACTGTACCATTTTCTTGAACAAACTGAATATTCTGAACAAGAAAAACTCCATCAATGAATCCAGAAAGCTCCAATAACAACAGCCAAACGAACCCTAGAAAAAGACCATTAGTAGAAGAACCTAGCAATGACAAACAACCAATAACACTAAATTCCATGGTGGTAGCCATTGATCACAACAATCTCTTTTACACAGTTTGTTCTATATGTGAAAAGACTCTACCTGACCCTTCTCCAAATACCCAAATCCCCAATTCTTCTTCTTCTTCTTCATCATCATCTTCAATACCCTTTTGCAAAAATTGCAACTTTAACTCTGCTTCTTCTGGTTCCAAACGCCTCTTTCGTGTTCTTGTATGTGAATTATTCTTTTTCTTTTCGTGTTGTTATCTGCAATGGTGATGCTTTTTTTGTTGGTTTTTGTCAAAGATTTGATTTTTTTTTGTGGGTGATTTTGGGTTTTTTTTTGCAGATGTCGATAGCTACTGAGAAAAGAGTGGTTGTGGTGATAATGTTTGATAGGGCAGCTAGGGTTTTGTTTGGTTGTTCTGCTGATGAGTTCTTTGATTTTGCCAAGACTCACCCTTTTGCTGGTAACTTTGATTAATCTCCCTTTTTATCTTTTAAAGTTGCACTGATGCATCATTTAGGAGATGTGTGAGAGGCTGGTTATAGCGGTTTTTAGGAGAGGTAGAAATAGGCTTAAGAAGAACTAGGGAGGTGATTAGATAGAATATAACACATATTTTGCTTACTACGACATGACCCTACACAAGGAGCGGTAGAAGTAGTCTTAAGAAGAACTAGGGAGGTGATTAGATAGAATATAACACATTTTACTTACTACGACATGACCCTACACAAGGAGAGGTAGAAGTAGGCTTAAGAAGAACTAGGGAGGTGATTAGAAAGAAGTAAGAACATGACACATAGTTTGCTTACTACGACATGACCCTACACAAGGAGAGCTGGAGAGGTAGAAGTAGGCGTAAGAAGAACTAGGGAGGTGATTATAAAGAACATGACACATAGTTTGCTTACTCCAACATGACCCTACACAAGGAGAGGTGGAAGTAGGATTAAGAAGGACTAGGGAGGTGATAAGAGAGAACATGACGCATATTTTGCTTACTACGGCATGACCCTACAAAGGAAGGTATGAAAGGCGAGAATTAGGTTAGAAGGGTAGTGAGTAGTCGAGAGATTTTCTATAGTAGGTTTTAGACGAGGTGAAAGTATGTTTTAGAAGAACTGAGAAAGGTGATTAGACAAAACGTGACATATTTTTAGCTTATTGAAGATTTGGGAAGGTATGGAGGTCAAGTATTAGGCTAGAAGGGTAAGTAATCGAGTGTTGTCGTACTTTTATGTTGTTGAGAAATGGGCTAGTCTACTCTCCTCATTTAGTAGTATTAGTTAGTATACCCAATGGGATTTTGCATTGGTATGTTGTTGTTACTACTTCCTGTTGTTTATTTTGTATTGTTTCTCTTGCTATTTTGTTATCCTTGTTTTCTTTTCAATCTGGCTTTGATTTCACTTCTCTTAAGTGGGGAGGGTCTATCGGAAACAACCTCTCTACCTCACAAACAAGGTAGGGGTAAGATCTGCATACATCCTATCCTCCCCAGACTACACTTGTGGGTATGTGGTTTTACTTTTTATAATTGCATTTTTCCAGTTTGAAGTTTACAGTGGCAATTTCACTTATGCTTGAAACAAGTCAACGGTATTGTTTGCAGGATATTTTTGGCTGCTAAATGAGATGCTGTAGAGAGTATACTAAACATAATATGAAAGTCAGTTCCTAGCCCATTATAGTGAAATGCTGTTAGAGACAAGTTTGACTGTAGTAGTAAATGAAATCACACTTTTTATACTTCCCTCTGTCATCAACAAGAGTTATAAATTTTTCTTTCCTTTAGGAATTCTATGAAACAAAAAAAAATGAAAGAAGTAGGAGATAATGGGGTAATGTTTCTGTAGGAATTGAAAATTCTAATGTAACTTACTCCCTCTGTCCCAATTTATGGGATAACTCTTTTTATTTGGAGATGTCCCGAGATGGTTGACACTTGACGCTATTTTATTGCCACACGACTTTCTTGACTTTCAAGTTTTCTAATTTATTAATCTTATTCAAGTTTCATGTTTTTGTTGAAATGTTTCTCCATCTAACTATACTCCAACAATCATTTTATTATTTTCTTCTACTATTTCTAAATGTAATATATAAGTTCAATTAGTATCTTAACATTCTCATATTAAATGGAACAGAGAGTATTTGGTCATGGTCCATAAAAAATTTTCCAAGAATCTTATAATTGCATCTTATAGTGTTTTGCTGGGCCATATGAAGAGGATTCTGACTTTTTGAGAATTCTTTTATGCAGCTGCAGCTGCCGGTAATGCTTTGGAGGGAGAGATGTTGAAGATCACCTTGTCCAAACCAAAGAATGGAAATGCACGA</genome_strand>
        <mrna_strand>TCAATCTTTCACCTTCCACTGGGCAATTTTCTTGAACAAACTGAATATTCTGAACAAGAAAAACTCCATCAATGAATCCAGAAAGCTCCAATAACAACAGCCAAACAAACCCTAGAAAAAGACCATTAGTAGAAGAACCTAACAATGACAAACAACCAATAACACTAAATTCCATGGTGGTAGCCATTGATCACAACAATCTCTTTTACACAGTTTGTTCTATATGTGAAAAGACTCTACCTGACCCTTCTCCAAATACCCATATCCCCAA---------TTCTTCTTCATCATCATCTTCAATACCCTTTTGCAGAAATTGCAACTTCAACTCTGCTTCTTCTGGTTCCAAACGCCTCTTTCGTGTTCTT......................................................................................................................ATGTCTATAGCTACTGAGAAAAGAGTGGTTGTGGTGATAATGTTTGATAGGGCAGCTAGGGTTTTATTTGGTTGTACTGCTGATGAGTTCTTTGATTTTGCCAAGACTCACCCTTTTGCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAGCTGCCGGTAATGCTTTGGAGGGAGAGATGTTGAAGATCACCTTGTTCAAACCAAAGAATGGAAATGCACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620589" ref_strand="+" ref_description="SGN-E620589 [71292]">
      <seq>aaagctacaataacaacagccaaataaaccccagaaaaagaccattagtagaagaacctaacaatgacaaacaaccaataacactaaattccatggtggtagccattgatcacaacaatctcttttacacagtctgttctatatgtgaaaagactctacctgaaccttctccaaatacccatttccccaattcttcttcttcatcatcatcttcaatactcttttgcaaaaattgcaactttaactctgcttcttctgattccaaacgcctctttcgtgtacttgtatgtgaatttcactttttctttttgtgttgttgtgtgcaattttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="59784" stop="58870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59484" g_stop="59144" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E620589" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E620589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59484" e_stop="59144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTCCAATAACAACAGCCAAACGAACCCTAGAAAAAGACCATTAGTAGAAGAACCTAGCAATGACAAACAACCAATAACACTAAATTCCATGGTGGTAGCCATTGATCACAACAATCTCTTTTACACAGTTTGTTCTATATGTGAAAAGACTCTACCTGACCCTTCTCCAAATACCCAAATCCCCAATTCTTCTTCTTCTTCTTCATCATCATCTTCAATACCCTTTTGCAAAAATTGCAACTTTAACTCTGCTTCTTCTGGTTCCAAACGCCTCTTTCGTGTTCTTGTATGTGAATTATTCTTTTTCTTTTCGTGTTGTTATCTGCAATGGTGATGC</genome_strand>
        <mrna_strand>AAAGCTACAATAACAACAGCCAAATAAACCCCAGAAAAAGACCATTAGTAGAAGAACCTAACAATGACAAACAACCAATAACACTAAATTCCATGGTGGTAGCCATTGATCACAACAATCTCTTTTACACAGTCTGTTCTATATGTGAAAAGACTCTACCTGAACCTTCTCCAAATACCCATTTCCCCAA------TTCTTCTTCTTCATCATCATCTTCAATACTCTTTTGCAAAAATTGCAACTTTAACTCTGCTTCTTCTGATTCCAAACGCCTCTTTCGTGTACTTGTATGTGAATTTCACTTTTTCTTTTTGTGTTGTTGTGTGCAATTTTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273357" ref_strand="+" ref_description="SGN-E273357 [cLEN-3-L15]">
      <seq>aatttttgttattcttcaaattttctaaagtttttaaaagcattttctttataagatatggatccatcaaatttatacgtacatcctggtccagtagagcatgatgtattaaaaattcaagttcatcatcgttccgaaggaatttggaatggtagcataaaagaagagaaatgttgcttatatacgcgtcgtggtgatattgaattttggcaacatttaaaatatcatccattacattctcgcatccttcaatattttgaaaattgtagatttaaaggaattcttgatgttggatgtgtgccgtatgactccggattaatttctgctttaattgaaaggtggcgtccggaaactcatacttttcacatgcgaactgacgaggctaccataactttacaagatattgaaattttattcggaatggtagtagatggtagtcctataattttaaatggagctgattctttaaggattataggtagacaagaaatgatttttcaattaacaggatggttacccgatactagttgtttttctggtgttagtagattgtcaacatataaattgattgagtatatcgaaggtttggaagttattaacgataactcaactgagcatgaagttcaacaaagatttagattatatttattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="73064" stop="74440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73359" g_stop="73413" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.855"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73414" i_stop="73543" i_length="130">
            <donor d_prob="0.806" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73544" g_stop="74140" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="652" r_length="597" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E273357" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73359" e_stop="73413"/>
          <exon e_start="73544" e_stop="74140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCGTTTCTATTTTTCTAATTTTCTAAAGTTTTTAAAAGCCTTTTCTTTATAAGGTGAGTTTGAATTTATTTTATTTTTAATTTATTTAATTAATTTTATACTTTTTTATATGATATTGTGGATATATTCAATCTACTGATACTTATATTAATGTTAATATTTCTTTTTATTTTTTGTGTATCGATATGCATCCGTCAAATGTATACGTACATCCTGGTCCAGTAGAGCATGATGTATTAAAAATTTAAGTTCATCATCGTTCCGAAGGAATTCGGAATGATAGCATAAAAGAAGAGAGGTCTTGCTTATATACGTGTCGTGGTGATATTGAATTTTGGCAACATATAAAATATCATCCATTACATTCTCGCATCCGTCAATATTTTGAAAATTGTGGATTAAAAGGAATTCTTGATGTAGGATGTGTGCCGTATGACTCCAGATTAATTTCTGCTTTAATTGAAAGGTGACGTCCAGAAACACACATTTTTCACATGCGAACTGGCGAGACTACCATAATTTTACAAGATGTTGAAATTTTATTCGGAATGGTAGTAGATGGTAGTCCTATAATTTTAAATGGAGCTGATTCTTTAGGGATTATAGGTAGACAAGAAATGATATTTGAATTAACAGGATGGTTACCCGATACTGGTTGTTTTTCTGGTGTTAGTAGATTGTTAACATATAAATTGATTGATTATATTGAAGGTTTAGATGGTATTAATGATCACTCAACAGAGCATGAAGTGCAACATTGATTTAGATTATATTCATTAT</genome_strand>
        <mrna_strand>AATTTTTGTTATTCTTCAAATTTTCTAAAGTTTTTAAAAGCATTTTCTTTATAAG..................................................................................................................................ATATGGATCCATCAAATTTATACGTACATCCTGGTCCAGTAGAGCATGATGTATTAAAAATTCAAGTTCATCATCGTTCCGAAGGAATTTGGAATGGTAGCATAAAAGAAGAGAAATGTTGCTTATATACGCGTCGTGGTGATATTGAATTTTGGCAACATTTAAAATATCATCCATTACATTCTCGCATCCTTCAATATTTTGAAAATTGTAGATTTAAAGGAATTCTTGATGTTGGATGTGTGCCGTATGACTCCGGATTAATTTCTGCTTTAATTGAAAGGTGGCGTCCGGAAACTCATACTTTTCACATGCGAACTGACGAGGCTACCATAACTTTACAAGATATTGAAATTTTATTCGGAATGGTAGTAGATGGTAGTCCTATAATTTTAAATGGAGCTGATTCTTTAAGGATTATAGGTAGACAAGAAATGATTTTTCAATTAACAGGATGGTTACCCGATACTAGTTGTTTTTCTGGTGTTAGTAGATTGTCAACATATAAATTGATTGAGTATATCGAAGGTTTGGAAGTTATTAACGATAACTCAACTGAGCATGAAGTTCAACAAAGATTTAGATTATATTTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="83264" stop="84099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83564" g_stop="83799" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83564" e_stop="83799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACCGAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTTCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATATTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTT-TCTTCTTTGTTAATTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTATCTTC-TTGTTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392027" ref_strand="+" ref_description="SGN-E392027 [TUS-24-O2](-)">
      <seq>cagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggactggatcttcttcttcaagtcttgatgccttgaacttccggcatggactagcttcttatgtatttttagcttttagactactcttagtttagtcatttgatcgtagatgttcttgtggtgatgacttccagattttggggaataatagatgttgaattttagaagttaatgaattggtctgtatttaatgagtttaagtcttccacattactttctgttgatattatattgaaatgttaaggttagattggttggttcgctcacataggagggtaagtgtgggtgccagtcgcaacccggttttggtcgtgacaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacgagtctagtagagtcttaaggaacggtagggggatgcctttacttttccttgagaggctataagacttttggaaaattccattctttcttctttcgtgctattacttgggtccaattggtatctaggtgatacaaattggtatctgaccatcttcactctatttcgcagatggttagaactagagcaacgactacgccagcatcaacaccagcaccggcgggacagggtgcgactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="83505" stop="84819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83805" g_stop="84519" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E392027" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83805" e_stop="84519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAAACGTGCCATCGTCTTCAACTCAACCGCAACTCTAGCCAGTCTTCGTCACATCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCCTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTT-TTA-CTTGTTTTAGTTTTTAGAATACTCTTAGTCTAGTAATTTGATCATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGAAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGT-TTTATTTAATGAGTTTGAGTCTTCCGCATTATTTATTGTTGATATTATATTGAAATGTTAGAGTTAAGATTGGTTGGTTCGCTCACATAGGAGGGTATGTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCATTCTTTCTTCCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCAGCACCGGCAGGACAGGGTGCGTCTGAGCCAGCCACTGGGGCTGTAG</genome_strand>
        <mrna_strand>CAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACT-ACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGACTACTCTTAGTTTAGTCATTTGATCGTAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTGTATTTAATGAGTTTAAGTCTTCCACATTACTTTCTGTTGATATTATATTGAAATGTTA-AGGTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGG-TTTTGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTTGGAAAATTCCATTCTTTC-TTC--T-TT-CGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCATCAACACCAGCACCGGCGGGACAGGGTGCGACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="83928" stop="84819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84228" g_stop="84519" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84228" e_stop="84519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCATTCTTTCTTCCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCAGCACCGGCAGGACAGGGTGCGTCTGAGCCAGCCACTGGGGCTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACC-G----GCCA-GACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="84293" stop="85446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84593" g_stop="85146" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84593" e_stop="85146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGTCCATCTGATACTAGGGCAGTAACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTGCAGAATGAGGGATTGCCACCCCAGCCTACCCCAGAGATGATAAATCAGGTGCTCGCTTATCTTAGTGGGTTGTCCGATCAGGGTCAAACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTCGAAATTGAAACCTCCAGTCATCAAGGGTGCGGAATCTGAGGATGCTTATGATTTTCTGGTTGACTATCATGAGCTACTACATAATATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="85613" stop="84350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85313" g_stop="84650" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85313" e_stop="84650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGTGGACTGAAACACAGTTGGGTGGCATACCGGGATAATGCACAAAACTTAGCCTCATATGCAGTAACTGACATCCTACCTTGCTCTAGGATCAAGAACTCATCTCTCTTCCTATCCCTCAATGTCCGGGGAATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATATTATGTAGTAGCTCATGATAGTCAACCAGAAAATCATAAGCATCCTCAGATTCCGCACCCTTGATGACTGGAGGTTTCAATTTCGAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATGCGGGGAGCCACAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGAGGTGTTTGACCCTGATCGGACAACCCACTAAGATAAGCGAGCACCTGATTTATCATCTCTGGGGTAGGCTGGGGTGGCA-ATCCCTCATTCTGCACTTGTTCATTTTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="84920" stop="86924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85220" g_stop="85392" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85393" i_stop="86132" i_length="740">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86133" g_stop="86660" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="85220" e_stop="85392"/>
          <exon e_start="86133" e_stop="86660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCAGTTACTGCATATGAGGCTAAGTTTTGTGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAAGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCTTTCCAAGAAGTGGTAGACTTTGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGACTTCACCATGGCAACTACATCAAAAAGGTTTTGAAAGGGAGGTGATTTTAATGGTTCTTACTCTAGAGGACAAGGTTCCGGAGGTTACTCAGTTCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGAGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATCGGACACATTAAGAGGTATTGTCCAAAATAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGGTGGTTATGGAAGAGGTCGTCATTCTGGAGGACGCGGTGGTCGAAGTAATGGTGGTCACCAAAACGGTCGGGGTGATGGGAAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACGGACAAACAAACGAAAGGGCCCATTGTTACGCTTTCCCTGGGTGGTCAGAAGCGGAGACATCAGATGCTGTCATCGCAGGCTTTCGGTTTGTGATTGTATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCTTCATTTGCTAATGGTCTAAATTTACCTTGTGAATTACTTGACATACCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAAGTATATAGGTCTTGTTTGGTGAATTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGACTTTGATGTAATTTTGGGTATGACTTGGCTTTCACTGAATTTTGCAATCTTGGATGGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTTTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTCCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTGGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGTAGATCTTCCTGGTATGCCACCAGATAGGGATATCGATTCCTGTATTGATCTTGAACCGGAAACTCGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCACGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAGGGCTTCATTAGACCAAGTGCATCGCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="86943" stop="85602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86643" g_stop="85908" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86643" e_stop="85908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGCGATGCACTTGGTCTAATGAAGCCCTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGTGGGAGCCATTCTATAAGGGGGTATAAAAATGGGGCGAGTTTCCGGTTCAAGATCAATACAGGAATCGATATCCCTATCTGGTGGCATACCAGGAAGATCTACAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCCAAACACCCTTTACTAACCATTTTCTTAGCACGAAGGAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACCATCCAAGATTGCAAAATTCAGTGAAAGCCAAGTCATACCCAAAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGTAATTCACAAGGTAAATTTAGACCATTAGCAAATGAAGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATACAATCACAAACCGAAA</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="86540" stop="85614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86240" g_stop="85910" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86240" e_stop="85910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACCATCCAAGATTGCAAAATTCAGTGAAAGCCAAGTCATACCCAAAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGTAATTCACAAGGTAAATTTAGACCATTAGCAAATGAAGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATACAATCACAAACCGA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="86943" stop="85683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86643" g_stop="85983" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86643" e_stop="85983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGCGATGCACTTGGTCTAATGAAGCCCTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGTGGGAGCCATTCTATAAGGGGGTATAAAAATGGGGCGAGTTTCCGGTTCAAGATCAATACAGGAATCGATATCCCTATCTGGTGGCATACCAGGAAGATCTACAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCCAAACACCCTTTACTAACCATTTTCTTAGCACGAAGGAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACCATCCAAGATTGCAAAATTCAGTGAAAGCCAAGTCATACCCAAAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGTAATTCACAAGGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="87012" stop="85754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86712" g_stop="86054" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86712" e_stop="86054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGCGATGCACTTGGTCTAATGAAGCCCTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGTGGGAGCCATTCTATAAGGGGGTATAAAAATGGGGCGAGTTTCCGGTTCAAGATCAATACAGGAATCGATATCCCTATCTGGTGGCATACCAGGAAGATCTACAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCCAAACACCCTTTACTAACCATTTTCTTAGCACGAAGGAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACCATCCAAGATTGCAAAATTCAGTGAAAGCCAAGTCATACCCAAAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCAACTATCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="87461" stop="86183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87161" g_stop="86482" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87161" e_stop="86482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCAGGTTCCTCCTTGCTCTTTGAGTAAACCAGTATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCACATACCTCGTTCGAAAAGCAGTCTTTGGCACATACGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATGTTAGAGAAGACACAAGCACCTTGTAACTGGTCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGCGATGCACTTGGTCTAATGAAGCCCTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGTGGGAGCCATTCTATAAGGGGGTATAAAAATGGGGCGAGTT</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="87532" stop="86220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87232" g_stop="86520" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87232" e_stop="86520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCCGTAGTAGCTAGCTAACCCAACAAAGCTTCTTATTTCTAACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCAGGTTCCTCCTTGCTCTTTGAGTAAACCAGTATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCACATACCTCGTTCGAAAAGCAGTCTTTGGCACATACGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATGTTAGAGAAGACACAAGCACCTTGTAACTGGTCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGCGATGCACTTGGTCTAATGAAGCCCTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGTGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="87532" stop="86337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87232" g_stop="86637" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87232" e_stop="86637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCCGTAGTAGCTAGCTAACCCAACAAAGCTTCTTATTTCTAACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCAGGTTCCTCCTTGCTCTTTGAGTAAACCAGTATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCACATACCTCGTTCGAAAAGCAGTCTTTGGCACATACGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATGTTAGAGAAGACACAAGCACCTTGTAACTGGTCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="87532" stop="86407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87232" g_stop="86707" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87232" e_stop="86707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCCGTAGTAGCTAGCTAACCCAACAAAGCTTCTTATTTCTAACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCAGGTTCCTCCTTGCTCTTTGAGTAAACCAGTATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCACATACCTCGTTCGAAAAGCAGTCTTTGGCACATACGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATGTTAGAGAAGACACAAGCACCTTGTAACTGGTCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="87461" stop="86503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87161" g_stop="86803" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87161" e_stop="86803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCAGGTTCCTCCTTGCTCTTTGAGTAAACCAGTATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCACATACCTCGTTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="89013" stop="88236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88713" g_stop="88537" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88713" e_stop="88537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTGTTGTAGGAGAACTCTGCTAAGTGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAGCACTTGAATCGTTCTTTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351886" ref_strand="+" ref_description="SGN-E351886 [cTOS-8-D9]">
      <seq>ggaaatgtgtggtttttctttgaaaaagaatataccaaccacaatgtacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatcttcaacaaaatggtgagatagaagttcaacaaattcgttcaagtgataatcttgctgatttattcacaaaggcattgccaacatcaacgtttgagaagttgagatacaagattggaatgcgccgtctccaagatatcaagtaaagttttcatcagggggagtgaaatacgcgttgtactcttttccttaactatgggtttgtcccaagttgggttttcctggtaagggttttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="95742" stop="94762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95442" g_stop="95061" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E351886" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95442" e_stop="95061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGTTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAATAAAATGGTGAGATAGAATTTCAACAAATTCGTTCAAGTGATAATCTTAATGATTTATTCACTAAGGCATTGCCAACATCAACGTTTGAGAAATTGAGATACAAGATTGGAATGCGCCGTCTCCGAGATATCAAGTAAAGTTTTCATCAGGGGGAGCGAAATACGCGTTGTACTCTTTTCCTTAACTATGGTTTTGTCCCAAGTTGAGTTTTTCCTGGTAAGGTTTTTAAC</genome_strand>
        <mrna_strand>GGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACAAAGGCATTGCCAACATCAACGTTTGAGAAGTTGAGATACAAGATTGGAATGCGCCGTCTCCAAGATATCAAGTAAAGTTTTCATCAGGGGGAGTGAAATACGCGTTGTACTCTTTTCCTTAACTATGGGTTTGTCCCAAGTTG-GGTTTTCCTGGTAAGGGTTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211563" ref_strand="+" ref_description="SGN-E211563 [cLEC-67-I7]">
      <seq>ataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccaaccataatgtacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatcttcaacaaaatgggtgagatagaagtncaacaaattcgttcaagtgataatcttgctgatttattcacaaaggcattgccaacatcancgtttgagaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="96258" stop="94896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95958" g_stop="95196" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="765" r_length="765" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E211563" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95958" e_stop="95196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACTCACATACATTAAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAACTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATGTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAATAGGCTATTTGTTTACATGTGGAGACACAACAATATCTTGGCGATCAATGAAGCAAACATTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGAAAGTCGAGAGTGCGTCT-GTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGTTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAATAAAAT-GGTGAGATAGAATTTCAACAAATTCGTTCAAGTGATAATCTTAATGATTTATTCACTAAGGCATTGCCAACATCAACGTTTGAGAAATTG</genome_strand>
        <mrna_strand>ATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCATAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGGTGAGATAGAAGTNCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACAAAGGCATTGCCAACATCANCGTTTGAGAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200850" ref_strand="+" ref_description="SGN-E200850 [cLEC-5-I1]">
      <seq>tttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccaaccacaatgcacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatctttaacaaaatggtgagatagaagttcaacaaattcgttcaagtgataatcttgctgatttattcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="95927" stop="94930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95627" g_stop="95230" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E200850" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95627" e_stop="95230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCAGATCCGCATAAAGCTCGATCACAAATAGGCTATTTGTTTACATGTGGAGACACAACAATATCTTGGCGATCAATGAAGCAAACATTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGAAAGTCGAGAGTGCGTCT-GTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGTTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAATAAAATGGTGAGATAGAATTTCAACAAATTCGTTCAAGTGATAATCTTAATGATTTATTCAC</genome_strand>
        <mrna_strand>TTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGCACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTTAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201786" ref_strand="+" ref_description="SGN-E201786 [cLEC-11-H5]">
      <seq>tggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccacccttattgtccgaagataatgctgcatgtatagctcaattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="96231" stop="95062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95931" g_stop="95362" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E201786" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95931" e_stop="95362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAACTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATGTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAATAGGCTATTTGTTTACATGTGGAGACACAACAATATCTTGGCGATCAATGAAGCAAACATTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGAAAGTCGAGAGTGCGTCT-GTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGTTCAATTGAA</genome_strand>
        <mrna_strand>TGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCACCCTTATTGTCCGAAGATAATGCTGCATGTATAGCTCAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209835" ref_strand="+" ref_description="SGN-E209835 [cLEC-52-G1]">
      <seq>atttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="96473" stop="95246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96173" g_stop="95546" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E209835" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96173" e_stop="95546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAATAATAGTTGTGTATGTTGATGATTTGAACATCATTGGCACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTTTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATACATTAAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAACTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATGTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAATAGGCTATTTGTTTACATGTGGAGACACAACAATATCTTGGCGATCAATG</genome_strand>
        <mrna_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299938" ref_strand="+" ref_description="SGN-E299938 [cLEW-11-G21]">
      <seq>ctcgtgcccgtttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtaccccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaaccacactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatcccgcataaagcccgatcacaaacaggctatttgtttacatgtggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="96415" stop="95271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96123" g_stop="95571" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E299938" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96123" e_stop="95571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTTTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATACATTAAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAACTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATGTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGAT-CCGCATAAAGCTCGATCACAAATAGGCTATTTGTTTACATGTGGAGA</genome_strand>
        <mrna_strand>CTCGTGCCCGTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACCCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACCACACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205887" ref_strand="+" ref_description="SGN-E205887 [cLEC-20-D8]">
      <seq>cgatttgtccctgcatttttattaaacggtcggggtctgaatttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtacgccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaacactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="96513" stop="95276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96213" g_stop="95576" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E205887" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96213" e_stop="95576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTGTCCCTGCATTTTCATTAAACGGTCGGGGTCTGAATTTGTAATAATAGTTGTGTATGTTGATGATTTGAACATCATTGGCACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTTTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATACATTAAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAACTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATGTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAATAGGCTATTTGTTTACATGT</genome_strand>
        <mrna_strand>CGATTTGTCCCTGCATTTTTATTAAACGGTCGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACGCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAACACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209830" ref_strand="+" ref_description="SGN-E209830 [cLEC-52-E1]">
      <seq>atttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatgcaaatcagaactgattggttacgcagatgcaaggtatttatcagatccgcataaagcccgatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="96473" stop="95298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96173" g_stop="95598" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E209830" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96173" e_stop="95598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAATAATAGTTGTGTATGTTGATGATTTGAACATCATTGGCACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTTTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATACATTAAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAACTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATGTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACA</genome_strand>
        <mrna_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATGCAAATCAGAACTGATTGGTTACGCAGATGCAAGGTATTTATCAGATCCGCATAAAGCCCGATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331947" ref_strand="+" ref_description="SGN-E331947 [cTOD-16-G12]">
      <seq>aaataatgcaacaatatgaagattttgagccaaaatctgttcacgaatgtagacagagaaatgattggccaaaatggaaggatgcaattcaagctgaattggcttcactagaaatacgtgaagtttttggaccgataatccgaacacctgaaggtatcaagccagtggggtacaaatgggtttttgtacggaaaagaaatgagaaagatgaagtcatgagatataaggcccgactcgttgctcaaggtttttctcaaagacctggcattgattatatggagacatattctccagtggtagatgcaatcaccttcagatatctcataaatttggcagttcatgaaaaacttgaaatgcgtctaatggacgttgtcacagcctatctatatggctcattggaccacaacattttcatgaaaattcctgaagcattcaaagttcctgaagcatacaaagattcaagagaaacttgttcaataaaacttcagaaatctctgtatggattgaaacaatcaggaaggatgtggtacaatcgtctgagtgaatatttgttaaagaaagggtacaaaaatgacccgatttgtccctgcatttttattaaacggtcggggtctgaatttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="97089" stop="95779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96789" g_stop="96079" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E331947" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96789" e_stop="96079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAATGCAACAAGATGAAGATTTTGAGCCAAAATTTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATAGAAGAATGCAATTCAAGCTGAATTGGCTTCACTAGAAAAACGTGAAGTTTTTGGACCGATAATCCGAACACCTGAGGGTATCAAGCCAGTGGGGTACAAATGGATTTTTGTACGAAAAAGAAATGAGAAAGGTGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGACATTGATTATATGGAGACATATTCTCTAGTGGTAGATGCAATCACCTTCAGATATCTCATAAATCTGGCAGTTCATGAAAAACTTGAAATGCGTCTAATGGATGTTGTCACAGCCTATCTATATGGTTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTCAAAGTGCCTGAAGCATACAAAGATTCAAGAGAAACTTGTTCAATAAAGCTTCAGAAGTCTCTGTATGGATTGAAAAAATCAGGAAGGATGTGGTACAATCGTCTGAGTGAATATTTGTTAAAGAAAGGGTATAAAAATGACCCGATTTGTCCCTGCATTTTCATTAAACGGTCGGGGTCTGAATTTGTAATAATAGTTGTGTATGTTGATGATTTGAACATCATTGGCACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAAAGAATTTG</genome_strand>
        <mrna_strand>AAATAATGCAACAATATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAATACGTGAAGTTTTTGGACCGATAATCCGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGGGTTTTTGTACGGAAAAGAAATGAGAAAGATGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGGCATTGATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTCAGATATCTCATAAATTTGGCAGTTCATGAAAAACTTGAAATGCGTCTAATGGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTCAAAGTTCCTGAAGCATACAAAGATTCAAGAGAAACTTGTTCAATAAAACTTCAGAAATCTCTGTATGGATTGAAACAATCAGGAAGGATGTGGTACAATCGTCTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTTATTAAACGGTCGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332350" ref_strand="+" ref_description="SGN-E332350 [cTOD-17-L10]">
      <seq>ttttctaatttggttatgaaaatggcatatgtcaacacaaaattaattgagggctctggaagagcgaccttattactacctggagggacaatattaagcattgataatgcattatattgtagtaagtctcaaagaaacttattaagtttcaaagttattcgccaaaatggctatcatgttgagacggctaatgaaggaaaggttgaatacctttacattactacaattaatgttgagaagaaaattgtgcatgaaaaattacctgcattttcttctgggttgtactatacaagtataagtacagttgaatcacatgccgtagtaaacaaaaggtttactaattttaatgattttatcatttggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="98845" stop="97865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98532" g_stop="98165" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E332350" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98532" e_stop="98165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTAGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCACAGTAAACAAAAGGTTTACTAATTTTAATG-TTTTATCATTTGGCATG</genome_strand>
        <mrna_strand>TTTTCTAATTTGGTTATGAAAATGGCATAT--GTCAACACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276288" ref_strand="-" ref_description="SGN-E276288 [cLEN-21-K4]">
      <seq>taaaaaaataattaagtaagataattataaaaacaacattggcagaaacaaatatattcttatttaaaataaaataaaatatgaaaagtataagatactaataatatcaaatacttgttcatcagttagattatcaagtacatccctaatcacaccgattacagttcgtgcctcattttgatgatttctacgtcgcgtccatttacgtgcaagtgcagttaaagcctcaaattgattggttcttagaggctttggcaatggttgcaggggaataattctttcccatgcccaaatctacaataaataaattcaccattacttataatgcacttaaatttaaaagtgcatattactagtatataaaaaatatttaatcaaaaaatatgtatacctacactaaagagagaaatccacaaacttcatttgattttttcattgacgcacgacataaacaattatacaaatatgataatgcggccgatccccatgcttgagttgacattaaatctaaatttctcatgtcaatcaaaatgtccaaattaatcttattattagatttatccggaaatattgatccaccacataaccataataaatataatctaaatctttgttgaacttcatgctcagttgagttatcgttaataacttccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="102108" stop="99928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101808" g_stop="101746" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.825"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101745" i_stop="100812" i_length="934">
            <donor d_prob="0.183" d_score="0.82"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100811" g_stop="100228" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="655" r_length="592" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E276288" ref_strand="-">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276288" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101808" e_stop="101746"/>
          <exon e_start="100811" e_stop="100228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAAAAAAAATTAAGTAAGATAATTATAAAAACAATATTGGCAGAAAAATAAAAAAAAATATGTACGTGAAAATGAACACTCTTACAAAATAATTTTTTTGTACTGTTGTGTCATAAGATATTTTACTTTTTAAGGACCTAATAAGAATTTATGTATATGTCAATTTATTCACATAATTTTCTTGGATAGTGAAACATAAGTGCCTCATTTAAAGATCTACCAAACATAATTTTATTTAGGGAAAAGGGTCTGATATACCCCTTAACTTTGTCATTTAGAGCTGATATACCCCTTATTATGAAAGTGGCTCATATATACCCTTACTTGTAAACAAATGGCTCACATATACCATTTTCCTCTAACGGTAATGAAAATAATAATAATTTTAATCTAATTTTTTTTATTTTTTTTCTAAAAAATATAATCCGAGATGAATAAATTTAATCCTCGTCAAACATATTTTTTTTGACTTTTTTTGTTTCAATGACTAATTTATAATTATTATTTTGATAATCAAATTTATTTATGTTTCACTAATATTCTTGTAAAACTTATTGTAGATGACCAAATTTTTTCTTCAAATACAAAATTAAATTACAATACACAGAAAAAAATATTTTAATTTTTTTTCTTTAAACTAAGGAATGAAAGAAAAAAATAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACTTTGAACTTTGATAGAAGAATCATATATACCCCTAAATAATTTTTTATAAATATTAGAAGTAATATATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGTCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATACGAGCCACTTTAATAACGAGGGGTATATCAGCTCTAAATGACAAAGTTGAGGGGTATATCAAACCCTTTTCCCTTTTATTTAAAATGAAATAAAATATGAATAGTTTAAAATACTAATAATATTAAATACATGTTCATCAATTAGATTATCTAGTACATCCCTAATCACACCGATTACAGTTCGTGCCTCA-TTTGATGATTTCTACGTCGCGTCCATTTACGTGCAAGCGCAGTTGAAGCCTCAAGTTGATTGATCCTTAGAGGCTTTTGGCAATGGTTGCAGGGGAATAATTCTTTCCCATGCCCAAATCTACAATAAATAAATTCACCATTACTTATAATGCACTTAAATTT---A--G---ATTACTAGTATATAAAAAATATTTAATTAAAAAATATGTATACCTGCACTAAAGAGAGAAATCCACAAACTTCATTTGATTTTTTCATTGATGCACGACATAAACAATTATACAAATATGATAATGTGGCTGCTCCCCATGCTTGAGTTGACATTAAATCTAAATTTCTCATGTCAATCAAAATGTCCAAATTAATCTTATTATTAGATTTATCCGAAAATATTGATCCATCACATAACCATAATAAATATAATCTAAATCTTTGTTGCACTTCATGCTTAGTTGAGTGATCATTAATACCATCCAA</genome_strand>
        <mrna_strand>TAAAAAAATAATTAAGTAAGATAATTATAAAAACAACATTGGCAGAAACAAATATATTCTTAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAATAAAATAAAATATGAAAAGTATAAGATACTAATAATATCAAATACTTGTTCATCAGTTAGATTATCAAGTACATCCCTAATCACACCGATTACAGTTCGTGCCTCATTTTGATGATTTCTACGTCGCGTCCATTTACGTGCAAGTGCAGTTAAAGCCTCAAATTGATTGGTTCTTAGAGGC-TTTGGCAATGGTTGCAGGGGAATAATTCTTTCCCATGCCCAAATCTACAATAAATAAATTCACCATTACTTATAATGCACTTAAATTTAAAAGTGCATATTACTAGTATATAAAAAATATTTAATCAAAAAATATGTATACCTACACTAAAGAGAGAAATCCACAAACTTCATTTGATTTTTTCATTGACGCACGACATAAACAATTATACAAATATGATAATGCGGCCGATCCCCATGCTTGAGTTGACATTAAATCTAAATTTCTCATGTCAATCAAAATGTCCAAATTAATCTTATTATTAGATTTATCCGGAAATATTGATCCACCACATAACCATAATAAATATAATCTAAATCTTTGTTGAACTTCATGCTCAGTTGAGTTATCGTTAATAACTTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276340" ref_strand="+" ref_description="SGN-E276340 [cLEN-21-J12]">
      <seq>agttattaactataactcaactgagtttgaagttcaacaaagatttagattatatggattatggttatgcggtggatcaatatttccggataaatctaataataagattaatttggacattttgattgacatgagaaatttagatttaatgtcaactcaagcatggggatcggccgcattatcatatttgtataattgtttatgtcgtgcgtcaatgaaaaaatcaaatgaagtttgtggatttctctctttagtgtaggtatacatattttttgattaaatattttttatatactagtaatatgcacttttaaatttaagtgcattataagtaatggtgaatttatttattgtagatttgggcatgggaaagaattattcccctgcaaccattgccaaagcctctaagaaccaatcaatttgaggctttaactgcacttgcacgtaaatggacgcgacgtagaaatcatcaaaatgaggcacgaactgtaatcggtgtgattagggatgtacttgataatctaactgatgaacaagtatttgatattattagtatcttatacttttcatattttattttattttaaataagaatatatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="99934" stop="101117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100233" g_stop="100815" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E276340" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100233" e_stop="100815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATTAATGATCACTCAACTAAGCATGAAGTGCAACAAAGATTTAGATTATATTTATTATGGTTATGTGATGGATCAATATTTTCGGATAAATCTAATAATAAGATTAATTTGGACATTTTGATTGACATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGAGCAGCCACATTATCATATTTGTATAATTGTTTATGTCGTGCATCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAGGTATACATATTTTTTAATTAAATATTTTTTATATACTAGT-A-AT---C---TAAATTTAAGTGCATTATAAGTAATGGTGAATTTATTTATTGTAGATTTGGGCATGGGAAAGAATTATTCCCCTGCAACCATTGCCAAAAGCCTCTAAGGATCAATCAACTTGAGGCTTCAACTGCGCTTGCACGTAAATGGACGCGACGTAGAAATCATC-AAATGAGGCACGAACTGTAATCGGTGTGATTAGGGATGTACTAGATAATCTAATTGATGAACATGTATTTAATATTATTAGTATTTTAAACTATTCATATTTTATTTCATTTTAAATAA</genome_strand>
        <mrna_strand>AGTTATTAACTATAACTCAACTGAGTTTGAAGTTCAACAAAGATTTAGATTATATGGATTATGGTTATGCGGTGGATCAATATTTCCGGATAAATCTAATAATAAGATTAATTTGGACATTTTGATTGACATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGATCGGCCGCATTATCATATTTGTATAATTGTTTATGTCGTGCGTCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGTAGGTATACATATTTTTTGATTAAATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATGGTGAATTTATTTATTGTAGATTTGGGCATGGGAAAGAATTATTCCCCTGCAACCATTGCC-AAAGCCTCTAAGAACCAATCAATTTGAGGCTTTAACTGCACTTGCACGTAAATGGACGCGACGTAGAAATCATCAAAATGAGGCACGAACTGTAATCGGTGTGATTAGGGATGTACTTGATAATCTAACTGATGAACAAGTATTTGATATTATTAGTATCTTATACTTTTCATATTTTATTTTATTTTAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276550" ref_strand="+" ref_description="SGN-E276550 [cLEN-17-K14]">
      <seq>ttaacgataactcaactgagcatgaagttcaacaaagatttagattatatttattatggttatgtggtggatcaatatttccggataaatctaataataagattaatttggacattttgattgacatgagaaatttagatttaatgtcaactcaagcatggggatcggccgcattatcatatttgtataattgtttatgtcgtgcgtcaatgaaaaaatcaaatgaagtttgtggatttctctctttagtgtagatttgggcatgggaaagaattattcccctgcaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="99938" stop="100916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100238" g_stop="100491" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100492" i_stop="100580" i_length="89">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100581" g_stop="100616" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="290" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E276550" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100238" e_stop="100491"/>
          <exon e_start="100581" e_stop="100616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGATCACTCAACTAAGCATGAAGTGCAACAAAGATTTAGATTATATTTATTATGGTTATGTGATGGATCAATATTTTCGGATAAATCTAATAATAAGATTAATTTGGACATTTTGATTGACATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGAGCAGCCACATTATCATATTTGTATAATTGTTTATGTCGTGCATCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAGGTATACATATTTTTTAATTAAATATTTTTTATATACTAGTAATCTAAATTTAAGTGCATTATAAGTAATGGTGAATTTATTTATTGTAGATTTGGGCATGGGAAAGAATTATTCCCCTGCAACCA</genome_strand>
        <mrna_strand>TTAACGATAACTCAACTGAGCATGAAGTTCAACAAAGATTTAGATTATATTTATTATGGTTATGTGGTGGATCAATATTTCCGGATAAATCTAATAATAAGATTAATTTGGACATTTTGATTGACATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGATCGGCCGCATTATCATATTTGTATAATTGTTTATGTCGTGCGTCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGTAG.........................................................................................ATTTGGGCATGGGAAAGAATTATTCCCCTGCAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="101555" stop="100505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101255" g_stop="100798" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101255" e_stop="100798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAATTTTTTCTTCAAATACAAAATTAAATTACAATACACA-GAAAAAAATATTTTAATTTTTTTTCTTTAAACTAAGGAATGAAAGAAAAAAATAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACTTTGAACTTTGATAGAAGAATCATATATACCCCTAAATA-ATTTTTT--ATAAATATTAGAAGTAATATATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGTCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATACGAGCCACTTTAATAACGAGGGGTATATCAGCTCTAAATGACAAAGTTGAGGGGTATATCAAACCCTTTTCCCTTTTATTTAAAATGAAATAA</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTATTTTTTAAAATTTCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="102042" stop="102978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102342" g_stop="102678" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102342" e_stop="102678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCGAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCCCAATACCATACTCATTTGGGAATCATGTTCGTTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTAATTCTCTTGTGTCGGTACGTGACACTCCGATCCCTCATATTCATTATTCCTCTTGTGTCTGTACGTGACACTCCGATCCCCTAAATCTACGTGTCAG-TTCGTGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347579" ref_strand="+" ref_description="SGN-E347579 [cTOF-26-K4]">
      <seq>aataaagaaaatagaaagaacaagagagagaggaagaatcgaacgagaagggagaaacaaagcttggagaaaaatttgcttgcttgatcactaatcttcggtggaggtaggttatggttttcatgctttcatagtaaactcttaatagagaatgatatgtattggtagtattgtaaaccctgctatatgcttaattgtatgcatgcatgaacgtgattatataattgtgattatattaagcatgatgaagttattgaatcccaaatcttgataaaaatctaatctcttattaatgatgatgccttggtatagaagaaggcttgatgaataaaagtaatgggattgatgatgccttggtatagagaaggcctgatgatttacagaatgatattagtggatcggagtgtcacgtaccgacacatgcaggggatcgggtgtcacgaaccgacacgtagaattaggggatcgggtgtcacgaactggcacgtagaattaggggatcgggtgtcacgaaccggcacgtagattaggggatcaggtgtcacgaaccgacacgtagaattaggggatcgggtgtcacgaaccgacacgtagaattaggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="110755" stop="102375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103338" g_stop="103022" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103021" i_stop="102972" i_length="50">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.521" a_score="0.98"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102971" g_stop="102675" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="605" r_length="293" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E347579" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103338" e_stop="103022"/>
          <exon e_start="102971" e_stop="102675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAAGAAAATAGAAAGAACAAGAGAGAGAGGGAGAATCGAACGAGAAGGGAGAAACAAAGCTTGGAGAAAAATTTGCTTGCTTGATCACTAATCTTCGGTGGAGGTAGGTTATGGTTGTTTCATGCTTTCATGAGTAAACTCTTAATAGTGATTGATATGTATTGGTAGTATTGTAAACCCTACTATATGCTTAATGGTATG-TTGCATGAATATGATTATGTGATTGTGA-TAAAATAAGCATGATGAAAATATTGAATCCCAAATCTTGAAAAGAAACTTTAATATACATTATTAATGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATTAAAGTAATGGGATTGATGATGCCTTGGTGTAGAAGAAGGCTTGATGAATTAAAGTAATGGGATTGATGATGCCTTGGTATAGAGAAGGCTTGATGGTTTACAGAATGATATTAGTGGATCGG-GTGTCACGAACCGGCACGTAGAATTAAGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGAGTGTCATGAACCGACTCGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGAT</genome_strand>
        <mrna_strand>AATAAAGAAAATAGAAAGAACAAGAGAGAGAGGAAGAATCGAACGAGAAGGGAGAAACAAAGCTTGGAGAAAAATTTGCTTGCTTGATCACTAATCTTCGGTGGAGGTAGGTTATGG-T-TTTCATGCTTTCAT-AGTAAACTCTTAATAGAGAATGATATGTATTGGTAGTATTGTAAACCCTGCTATATGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTATATTAAGCATGATGAAGTTATTGAATCCCAAATCTTGATAA-AAA-TCTAATCT-C-TTATTAATGATGATGCCTTGGTATAG..................................................AAGAAGGCTTGATGAATAAAAGTAATGGGATTGATGATGCCTTGGTATAGAGAAGGCCTGATGATTTACAGAATGATATTAGTGGATCGGAGTGTCACGTACCGACACAT-G---CAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACTGGCACGTAGAATTAGGGGATCGGGTGTCACGAACCGGCACGTAG-ATTAGGGGATCAGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="104209" stop="104986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104509" g_stop="104685" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104509" e_stop="104685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="105689" stop="107001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105989" g_stop="106701" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105989" e_stop="106701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACGAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGGTACTTGTTCTTAATAGTTACTTTATTCAGTTGTCTGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTC-TTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="105689" stop="106884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105989" g_stop="106584" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105989" e_stop="106584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACGAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGGTACTTGTTCTTAATAGTTACTTTATTCAGTTGTCTGTAGTCTATGCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="105689" stop="106814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105989" g_stop="106514" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105989" e_stop="106514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACGAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="105760" stop="107038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106060" g_stop="106739" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106060" e_stop="106739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACGAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGGTACTTGTTCTTAATAGTTACTTTATTCAGTTGTCTGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTTTAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="105760" stop="106718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106060" g_stop="106418" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106060" e_stop="106418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACGAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="106209" stop="107467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106509" g_stop="107167" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106509" e_stop="107167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGGGGAAGAGGGTACTTGTTCTTAATAGTTACTTTATTCAGTTGTCTGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTTTAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATATAGAAGTCAATATCCCTATCCGATGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACGTCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="108305" stop="106261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108005" g_stop="107833" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107832" i_stop="107089" i_length="744">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.084" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107088" g_stop="106561" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="108005" e_stop="107833"/>
          <exon e_start="107088" e_stop="106561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCGGATTTGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCTACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCACAACATCGACATCAAAAAGTCTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACACTAGAGGACAAGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAACACTTCTCCGAGGGGCATATGATCGACTCCAAAGAATGTTATGGATGTGGGGAGATTGGACATATTAGGAGAAATTGTCCCAGACCAAGTTACAGACCCCCAATAACTAGAGGTAGAGGTGGTCATGGTAGAGACCGTTTTTCTGGAGGGCGTGGTGGTCGAGGTAATAGTGGTCACCAAAACGACAGAGGTAATGGGCAAACTGGAGCCACTACATCACAGCATGGTAGGGGCAATGGACAGACGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTTGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATCCGTGTCTCTACTCCGCTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTAAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGACGTGATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTCCGCATCGTCTCCTTTCTTCGTGCTAAGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCATCGGATAGGGATATTGACTTCTATATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTAAAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="106278" stop="107639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106578" g_stop="107339" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106578" e_stop="107339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTTTAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATATAGAAGTCAATATCCCTATCCGATGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACGTCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCAGCGGAGTAGAGACACGGATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACAAGAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="106278" stop="107538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106578" g_stop="107238" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106578" e_stop="107238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTTTAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATATAGAAGTCAATATCCCTATCCGATGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACGTCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCAGCGGAGTAGAGACACGGATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="106888" stop="108046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107188" g_stop="107746" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107188" e_stop="107746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACGGATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACAAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCATTGCCCCTACCATGCTGTGATGTAGTGGCTCCAGTTTGCCCATTACCTCTGTCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGTCTCTACCATGACCACCTCTACCTCTAGTTATTGGGGGTCTGTAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCTTGTCCTCTAGTGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214046" ref_strand="+" ref_description="SGN-E214046 [cLEC-80-E17]">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaacaagaagattacctgtgatgacagcatcagatgcctccgctttagaccgcccagggaaagcgtaacaatgggccctatagtttgtttgtccattgcccctaccatgtcgtgatgtagtggccccagtttgtccattacctctgccgttttggtgaccaccattgcctcgaccaccacgtcctccaaaataacggcctctaccatgacaacctctacctctaactattgggggtctataacttggtccgggaaaatttctcctaatatgtccaatctccccacatccataacattctctagagtcactcataggcccctcggagaagtgttgaccggtctgaggtggacccccaactacagtttgtagtgaagactgaatgggtcgaactgagtaacctccagaaccttgtcctctagagtaagaacccttaaactcatctcccctttgaaacctcatcgatgtcgatgtcgtggtgaagtcgtctggtttcactccttccacttctatcaaaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaagggcgaaatccgcaattctgacctcaaccccttcacaaccggcgaatccgctcttgagggactgaacagagttgagtggcatatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="106892" stop="108255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107192" g_stop="107955" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E214046" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107192" e_stop="107955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACAAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCATTGCCCCTACCATGCTGTGATGTAGTGGCTCCAGTTTGCCCATTACCTCTGTCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGTCTCTACCATGACCACCTCTACCTCTAGTTATTGGGGGTCTGTAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCTTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGACTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTAGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCAAATCCGCTCTTGA-GGACTGAAACAGAGTTGAGTGGCATATCTGG</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACAAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTTAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATAGTTTGTTTGTCCATTGCCCCTACCATGTCGTGATGTAGTGGCCCCAGTTTGTCCATTACCTCTGCCGTTTTGGTGACCACCATTGCCTCGACCACCACGTCCTCCAAAATAACGGCCTCTACCATGACAACCTCTACCTCTAACTATTGGGGGTCTATAACTTGGTCCGGGAAAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTAGAGTCACTCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTTTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCAGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCATCTCCCCTTTGAAACCTCATCGATGTCGATGTCGTGGTGAAGTCGTCTGGTTTCACTCCTTCCACTTCTATCAAAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGGCGAAATCCGCAATTCTGACCTCAACCCCTTCAC-AACCGGCGAATCCGCTCTTGAGGGACTG-AACAGAGTTGAGTGGCATATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="106972" stop="108361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107272" g_stop="108061" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107272" e_stop="108061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATCAAACAATACAGAAGCCATGCAATCACAAACAAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCATTGCCCCTACCATGCTGTGATGTAGTGGCTCCAGTTTGCCCATTACCTCTGTCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGTCTCTACCATGACCACCTCTACCTCTAGTTATTGGGGGTCTGTAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCTTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGACTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTAGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCAAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353805" ref_strand="+" ref_description="SGN-E353805 [cTOS-10-C24]">
      <seq>ggatcaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctaaagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="106974" stop="108107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107274" g_stop="107807" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E353805" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107274" e_stop="107807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCAAACAATACAGAAGCCATGCAATCACAAACAAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCATTGCCCCTACCATGCTGTGATGTAGTGGCTCCAGTTTGCCCATTACCTCTGTCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGTCTCTACCATGACCACCTCTACCTCTAGTTATTGGGGGTCTGTAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCTTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGACTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</genome_strand>
        <mrna_strand>GGATC-AACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAAAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="107048" stop="108345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107348" g_stop="108045" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107348" e_stop="108045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCATTGCCCCTACCATGCTGTGATGTAGTGGCTCCAGTTTGCCCATTACCTCTGTCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGTCTCTACCATGACCACCTCTACCTCTAGTTATTGGGGGTCTGTAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCTTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGACTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTAGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCAAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="107609" stop="108928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107909" g_stop="108628" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107909" e_stop="108628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGATGGTGCCTCTATTGGTTGACACTCGACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCTGGAGCCTGAGGTGCTGGTGCAGAGAACACTAGGGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTCTGCACTCGTTCAGTTTCCCCAT-CCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCTCTGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="107612" stop="108875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107912" g_stop="108575" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107912" e_stop="108575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGATGGTGCCTCTATTGGTTGACACTCGACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCTGGAGCCTGAGGTGCTGGTGCAGAGAACACTAGGGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTT-CCTCATTCTGCACTCGTTCAGTTTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="108932" stop="107779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108632" g_stop="108079" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108632" e_stop="108079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATACTAGGGCAGAGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACGAGTGCAGAATGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCTAGTGTTCTCTGCACCAGCACCTCAGGCTCCAGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTCGAGTGTCAACCAATAGAGGCACCATCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="107967" stop="109000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108267" g_stop="108699" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108267" e_stop="108699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCTGGAGCCTGAGGTGCTGGTGCAGAGAACACTAGGGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTCTGCACTCGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCTCTGCCCTAGTATCAGATGGGCTAGGTGCTTGTCCTCTCCCTCTAGAGGACGTCCTCCCACGACCTCTTCCACGGCCCCTTGCCGCTGTTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="109291" stop="108406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108991" g_stop="108706" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108991" e_stop="108706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCAACTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACGTCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="110084" stop="109007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109784" g_stop="109307" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109784" e_stop="109307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACGTAGATTTAGGGGATCGAAGTGTCACGTACCGACACAAGAGGAATAATGAATA-TGAGGGATCGGAGTGTCACGTACCGACACAAGAGAATTAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAACGAACATGATTCCCAAATGAGTATGGTATTGGGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTGCTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTCGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTACAACAAACGTGCCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="110085" stop="109250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109785" g_stop="109548" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109785" e_stop="109548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACGTAGATTTAGGGGATCGAAGTGTCACGTACCGACACAAGAGGAATAATGAATA-TGAGGGATCGGAGTGTCACGTACCGACACAAGAGAATTAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAACGAACATGATTCCCAAATGAGTATGGTATTGGGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTGCTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>156</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="198" PGL_stop="2728"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="198" e_stop="543"/>
            <exon e_start="674" e_stop="1124"/>
            <exon e_start="2297" e_stop="2728"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.994" e_score="0.974"/>
          <exon-intron don_prob="0.697" acc_prob="0.994" e_score="0.945"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="198" e_stop="543" e_length="346"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.994">
            <gDNA_intron_boundary i_start="544" i_stop="673" i_length="130"/>
          </intron>
          <exon e_serial="2" e_score="0.945">
            <gDNA_exon_boundary e_start="674" e_stop="1124" e_length="451"/>
          </exon>
          <intron i_serial="2" don_prob="0.697" acc_prob="0.994">
            <gDNA_intron_boundary i_start="1125" i_stop="2296" i_length="1172"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2297" e_stop="2728" e_length="432"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="198" stop="543"/>
              <exon start="674" stop="1106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="224" stop="543"/>
              <exon start="674" stop="1074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="291" stop="543"/>
              <exon start="674" stop="970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="810" stop="1124"/>
              <exon start="2297" stop="2551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="863" stop="1124"/>
              <exon start="2297" stop="2585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1058" stop="1124"/>
              <exon start="2297" stop="2728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2297" stop="2671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351006" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTGCTTTTGCTCCTGCAATATCTTCAAACATACCATGGGCTGCAGTACTAGGAAATCATGACCAGGAATCTACACTCTCAAGGGAAGGCGTGATGAAACATATCATTGGCATGAAAAGTACTTTATCTCAATTGAATCCTCCCGACGTTCCTGATATTGATGGTTTTGGGAATTATAATCTGGAAGTCCATGGGACTGAGGGTTCCGAGCTGACTAATAAGTCCGTTCTCAATCTGTATTTCCTTGACAGTGGAGATTACTCTACTGTTCCATCCATCCCTGGTTATGGTTGGATTAAACCCTCTCAACAGTTCTGGTTTCAACGCACCTCTAGGAAGCTTAAG : AAAACTTACCTGCACGATTCAAATGCTAGGAAGGCTCCTGCTCCAGGACTTGCTTACTTTCATATTCCACTTCCTGAATATGCAAGTTTTGACTCATCAAACTTCACAGGGGTTAGACAAGAAGGCATAAGCTCTGCTTCAATAAATTCAGGTTTCTTCACCACTATGGTGGAAAGTGGTGATGTAAAGGCAGCATTTGCTGGCCATGATCACATAAATGATTTTTGTGGCAAGTTGATGGACATAAATCTTTGCTATGCTGGAGGATTTGGATATCACGCTTATGGGAAGGCTGGATGGTCAAGGAGGGCAAGGATGGTAGTAGCATCTTTGGAAAAAACAGGGAAAGGAGGGTGGGGAGATGTCAAATCTATTAAAACATGGAAGCGACTTGATGATGAACATCTTACAACCATCGATACTCAGGTTCTTTGGAGCAAGAGGTCTGCCG : GTGCTCGTAGAAAAAAGCCTATCGGTCACCACTAAAGAATTTTATTACTGAAGCATGATCACAAATTGGTAGCAGAAGCCTATTCTTCAACTTGCATCTACTGGAAAGGTTTATACTTGTTGTATGGGTTATTTACTTAGGGTCAAAAGTTAATGTGTAATGTTAAAGGTGATGTAGGAGCAAGCAATATATATGTAGGTCACATTCAGAGAATGAGATAAGGACCCACTTATGTAGTAAAGAAAGATTGATATAGTTCGAAACTCGCCTCTCTACTTCCTCAAGTAGGGCAAGGTACGTGTACACTTTATCCTCCCGAGATTTATTGTTGTTGTATGTTTGCTGTTGTACTAGAAAAACGTGAACTATTCTGTTGTACCGATGTTGTGCCTTTCTCATATTTTTTTTCCATATGATTATTCTATTTGAGAC</gDNA_template>
            <first_frame> C  C  F  C  S  C  N  I  F  K  H  T  M  G  C  S  T  R  K  S  *  P  G  I  Y  T  L  K  G  R  R  D  E  T  Y  H  W  H  E  K  Y  F  I  S  I  E  S  S  R  R  S  *  Y  *  W  F  W  E  L  *  S  G  S  P  W  D  *  G  F  R  A  D  *  *  V  R  S  Q  S  V  F  P  *  Q  W  R  L  L  Y  C  S  I  H  P  W  L  W  L  D  *  T  L  S  T  V  L  V  S  T  H  L  *  E  A  *   : E  N  L  P  A  R  F  K  C  *  E  G  S  C  S  R  T  C  L  L  S  Y  S  T  S  *  I  C  K  F  *  L  I  K  L  H  R  G  *  T  R  R  H  K  L  C  F  N  K  F  R  F  L  H  H  Y  G  G  K  W  *  C  K  G  S  I  C  W  P  *  S  H  K  *  F  L  W  Q  V  D  G  H  K  S  L  L  C  W  R  I  W  I  S  R  L  W  E  G  W  M  V  K  E  G  K  D  G  S  S  I  F  G  K  N  R  E  R  R  V  G  R  C  Q  I  Y  *  N  M  E  A  T  *  *  *  T  S  Y  N  H  R  Y  S  G  S  L  E  Q  E  V  C  R :   C  S  *  K  K  A  Y  R  S  P  L  K  N  F  I  T  E  A  *  S  Q  I  G  S  R  S  L  F  F  N  L  H  L  L  E  R  F  I  L  V  V  W  V  I  Y  L  G  S  K  V  N  V  *  C  *  R  *  C  R  S  K  Q  Y  I  C  R  S  H  S  E  N  E  I  R  T  H  L  C  S  K  E  R  L  I  *  F  E  T  R  L  S  T  S  S  S  R  A  R  Y  V  Y  T  L  S  S  R  D  L  L  L  L  Y  V  C  C  C  T  R  K  T  *  T  I  L  L  Y  R  C  C  A  F  L  I  F  F  F  H  M  I  I  L  F  E   </first_frame>
            <second_frame>  A  A  F  A  P  A  I  S  S  N  I  P  W  A  A  V  L  G  N  H  D  Q  E  S  T  L  S  R  E  G  V  M  K  H  I  I  G  M  K  S  T  L  S  Q  L  N  P  P  D  V  P  D  I  D  G  F  G  N  Y  N  L  E  V  H  G  T  E  G  S  E  L  T  N  K  S  V  L  N  L  Y  F  L  D  S  G  D  Y  S  T  V  P  S  I  P  G  Y  G  W  I  K  P  S  Q  Q  F  W  F  Q  R  T  S  R  K  L  K  :  K  T  Y  L  H  D  S  N  A  R  K  A  P  A  P  G  L  A  Y  F  H  I  P  L  P  E  Y  A  S  F  D  S  S  N  F  T  G  V  R  Q  E  G  I  S  S  A  S  I  N  S  G  F  F  T  T  M  V  E  S  G  D  V  K  A  A  F  A  G  H  D  H  I  N  D  F  C  G  K  L  M  D  I  N  L  C  Y  A  G  G  F  G  Y  H  A  Y  G  K  A  G  W  S  R  R  A  R  M  V  V  A  S  L  E  K  T  G  K  G  G  W  G  D  V  K  S  I  K  T  W  K  R  L  D  D  E  H  L  T  T  I  D  T  Q  V  L  W  S  K  R  S  A   : G  A  R  R  K  K  P  I  G  H  H  *  R  I  L  L  L  K  H  D  H  K  L  V  A  E  A  Y  S  S  T  C  I  Y  W  K  G  L  Y  L  L  Y  G  L  F  T  *  G  Q  K  L  M  C  N  V  K  G  D  V  G  A  S  N  I  Y  V  G  H  I  Q  R  M  R  *  G  P  T  Y  V  V  K  K  D  *  Y  S  S  K  L  A  S  L  L  P  Q  V  G  Q  G  T  C  T  L  Y  P  P  E  I  Y  C  C  C  M  F  A  V  V  L  E  K  R  E  L  F  C  C  T  D  V  V  P  F  S  Y  F  F  S  I  *  L  F  Y  L  R  </second_frame>
            <third_frame>   L  L  L  L  L  Q  Y  L  Q  T  Y  H  G  L  Q  Y  *  E  I  M  T  R  N  L  H  S  Q  G  K  A  *  *  N  I  S  L  A  *  K  V  L  Y  L  N  *  I  L  P  T  F  L  I  L  M  V  L  G  I  I  I  W  K  S  M  G  L  R  V  P  S  *  L  I  S  P  F  S  I  C  I  S  L  T  V  E  I  T  L  L  F  H  P  S  L  V  M  V  G  L  N  P  L  N  S  S  G  F  N  A  P  L  G  S  L  R :   K  L  T  C  T  I  Q  M  L  G  R  L  L  L  Q  D  L  L  T  F  I  F  H  F  L  N  M  Q  V  L  T  H  Q  T  S  Q  G  L  D  K  K  A  *  A  L  L  Q  *  I  Q  V  S  S  P  L  W  W  K  V  V  M  *  R  Q  H  L  L  A  M  I  T  *  M  I  F  V  A  S  *  W  T  *  I  F  A  M  L  E  D  L  D  I  T  L  M  G  R  L  D  G  Q  G  G  Q  G  W  *  *  H  L  W  K  K  Q  G  K  E  G  G  E  M  S  N  L  L  K  H  G  S  D  L  M  M  N  I  L  Q  P  S  I  L  R  F  F  G  A  R  G  L  P  :  V  L  V  E  K  S  L  S  V  T  T  K  E  F  Y  Y  *  S  M  I  T  N  W  *  Q  K  P  I  L  Q  L  A  S  T  G  K  V  Y  T  C  C  M  G  Y  L  L  R  V  K  S  *  C  V  M  L  K  V  M  *  E  Q  A  I  Y  M  *  V  T  F  R  E  *  D  K  D  P  L  M  *  *  R  K  I  D  I  V  R  N  S  P  L  Y  F  L  K  *  G  K  V  R  V  H  F  I  L  P  R  F  I  V  V  V  C  L  L  L  Y  *  K  N  V  N  Y  S  V  V  P  M  L  C  L  S  H  I  F  F  P  Y  D  Y  S  I  *  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="199" stop="543"/>
                    <exon start="674" stop="1124"/>
                    <exon start="2297" stop="2331"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>828</number_coding_nucleotides>
                  <number_encoded_amino_acids>276</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAFAPAISSNIPWAAVLGNHDQESTLSREGVMKHIIGMKSTLSQLNPPDVPDIDGFGNYNLEVHGTEGSELTNKSVLNLYFLDSGDYSTVPSIPGYGWIKPSQQFWFQRTSRKLKKTYLHDSNARKAPAPGLAYFHIPLPEYASFDSSNFTGVRQEGISSASINSGFFTTMVESGDVKAAFAGHDHINDFCGKLMDINLCYAGGFGYHAYGKAGWSRRARMVVASLEKTGKGGWGDVKSIKTWKRLDDEHLTTIDTQVLWSKRSAGARRKKPIGHH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="198" e_stop="543"/>
            <exon e_start="674" e_stop="1173"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.994" e_score="0.974"/>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="198" e_stop="543" e_length="346"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.994">
            <gDNA_intron_boundary i_start="544" i_stop="673" i_length="130"/>
          </intron>
          <exon e_serial="2" e_score="0.942">
            <gDNA_exon_boundary e_start="674" e_stop="1173" e_length="500"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="198" stop="543"/>
              <exon start="674" stop="1106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="224" stop="543"/>
              <exon start="674" stop="1074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="291" stop="543"/>
              <exon start="674" stop="970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="350" stop="543"/>
              <exon start="674" stop="1173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588615" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTGCTTTTGCTCCTGCAATATCTTCAAACATACCATGGGCTGCAGTACTAGGAAATCATGACCAGGAATCTACACTCTCAAGGGAAGGCGTGATGAAACATATCATTGGCATGAAAAGTACTTTATCTCAATTGAATCCTCCCGACGTTCCTGATATTGATGGTTTTGGGAATTATAATCTGGAAGTCCATGGGACTGAGGGTTCCGAGCTGACTAATAAGTCCGTTCTCAATCTGTATTTCCTTGACAGTGGAGATTACTCTACTGTTCCATCCATCCCTGGTTATGGTTGGATTAAACCCTCTCAACAGTTCTGGTTTCAACGCACCTCTAGGAAGCTTAAG : AAAACTTACCTGCACGATTCAAATGCTAGGAAGGCTCCTGCTCCAGGACTTGCTTACTTTCATATTCCACTTCCTGAATATGCAAGTTTTGACTCATCAAACTTCACAGGGGTTAGACAAGAAGGCATAAGCTCTGCTTCAATAAATTCAGGTTTCTTCACCACTATGGTGGAAAGTGGTGATGTAAAGGCAGCATTTGCTGGCCATGATCACATAAATGATTTTTGTGGCAAGTTGATGGACATAAATCTTTGCTATGCTGGAGGATTTGGATATCACGCTTATGGGAAGGCTGGATGGTCAAGGAGGGCAAGGATGGTAGTAGCATCTTTGGAAAAAACAGGGAAAGGAGGGTGGGGAGATGTCAAATCTATTAAAACATGGAAGCGACTTGATGATGAACATCTTACAACCATCGATACTCAGGTTCTTTGGAGCAAGAGGTCTGCCGGTAAGGTTCTGAGAATGTAACTTCTCATCTCAGGCTTTGGGCTGTCCCA</gDNA_template>
            <first_frame> C  C  F  C  S  C  N  I  F  K  H  T  M  G  C  S  T  R  K  S  *  P  G  I  Y  T  L  K  G  R  R  D  E  T  Y  H  W  H  E  K  Y  F  I  S  I  E  S  S  R  R  S  *  Y  *  W  F  W  E  L  *  S  G  S  P  W  D  *  G  F  R  A  D  *  *  V  R  S  Q  S  V  F  P  *  Q  W  R  L  L  Y  C  S  I  H  P  W  L  W  L  D  *  T  L  S  T  V  L  V  S  T  H  L  *  E  A  *   : E  N  L  P  A  R  F  K  C  *  E  G  S  C  S  R  T  C  L  L  S  Y  S  T  S  *  I  C  K  F  *  L  I  K  L  H  R  G  *  T  R  R  H  K  L  C  F  N  K  F  R  F  L  H  H  Y  G  G  K  W  *  C  K  G  S  I  C  W  P  *  S  H  K  *  F  L  W  Q  V  D  G  H  K  S  L  L  C  W  R  I  W  I  S  R  L  W  E  G  W  M  V  K  E  G  K  D  G  S  S  I  F  G  K  N  R  E  R  R  V  G  R  C  Q  I  Y  *  N  M  E  A  T  *  *  *  T  S  Y  N  H  R  Y  S  G  S  L  E  Q  E  V  C  R  *  G  S  E  N  V  T  S  H  L  R  L  W  A  V  P </first_frame>
            <second_frame>  A  A  F  A  P  A  I  S  S  N  I  P  W  A  A  V  L  G  N  H  D  Q  E  S  T  L  S  R  E  G  V  M  K  H  I  I  G  M  K  S  T  L  S  Q  L  N  P  P  D  V  P  D  I  D  G  F  G  N  Y  N  L  E  V  H  G  T  E  G  S  E  L  T  N  K  S  V  L  N  L  Y  F  L  D  S  G  D  Y  S  T  V  P  S  I  P  G  Y  G  W  I  K  P  S  Q  Q  F  W  F  Q  R  T  S  R  K  L  K  :  K  T  Y  L  H  D  S  N  A  R  K  A  P  A  P  G  L  A  Y  F  H  I  P  L  P  E  Y  A  S  F  D  S  S  N  F  T  G  V  R  Q  E  G  I  S  S  A  S  I  N  S  G  F  F  T  T  M  V  E  S  G  D  V  K  A  A  F  A  G  H  D  H  I  N  D  F  C  G  K  L  M  D  I  N  L  C  Y  A  G  G  F  G  Y  H  A  Y  G  K  A  G  W  S  R  R  A  R  M  V  V  A  S  L  E  K  T  G  K  G  G  W  G  D  V  K  S  I  K  T  W  K  R  L  D  D  E  H  L  T  T  I  D  T  Q  V  L  W  S  K  R  S  A  G  K  V  L  R  M  *  L  L  I  S  G  F  G  L  S   </second_frame>
            <third_frame>   L  L  L  L  L  Q  Y  L  Q  T  Y  H  G  L  Q  Y  *  E  I  M  T  R  N  L  H  S  Q  G  K  A  *  *  N  I  S  L  A  *  K  V  L  Y  L  N  *  I  L  P  T  F  L  I  L  M  V  L  G  I  I  I  W  K  S  M  G  L  R  V  P  S  *  L  I  S  P  F  S  I  C  I  S  L  T  V  E  I  T  L  L  F  H  P  S  L  V  M  V  G  L  N  P  L  N  S  S  G  F  N  A  P  L  G  S  L  R :   K  L  T  C  T  I  Q  M  L  G  R  L  L  L  Q  D  L  L  T  F  I  F  H  F  L  N  M  Q  V  L  T  H  Q  T  S  Q  G  L  D  K  K  A  *  A  L  L  Q  *  I  Q  V  S  S  P  L  W  W  K  V  V  M  *  R  Q  H  L  L  A  M  I  T  *  M  I  F  V  A  S  *  W  T  *  I  F  A  M  L  E  D  L  D  I  T  L  M  G  R  L  D  G  Q  G  G  Q  G  W  *  *  H  L  W  K  K  Q  G  K  E  G  G  E  M  S  N  L  L  K  H  G  S  D  L  M  M  N  I  L  Q  P  S  I  L  R  F  F  G  A  R  G  L  P  V  R  F  *  E  C  N  F  S  S  Q  A  L  G  C  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="199" stop="543"/>
                    <exon start="674" stop="1144"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAFAPAISSNIPWAAVLGNHDQESTLSREGVMKHIIGMKSTLSQLNPPDVPDIDGFGNYNLEVHGTEGSELTNKSVLNLYFLDSGDYSTVPSIPGYGWIKPSQQFWFQRTSRKLKKTYLHDSNARKAPAPGLAYFHIPLPEYASFDSSNFTGVRQEGISSASINSGFFTTMVESGDVKAAFAGHDHINDFCGKLMDINLCYAGGFGYHAYGKAGWSRRARMVVASLEKTGKGGWGDVKSIKTWKRLDDEHLTTIDTQVLWSKRSAGKVLRM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="9087" PGL_stop="3009"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9087" e_stop="8757"/>
            <exon e_start="7113" e_stop="7033"/>
            <exon e_start="6919" e_stop="6824"/>
            <exon e_start="6731" e_stop="6648"/>
            <exon e_start="6510" e_stop="6441"/>
            <exon e_start="6301" e_stop="6219"/>
            <exon e_start="4792" e_stop="4713"/>
            <exon e_start="4489" e_stop="4391"/>
            <exon e_start="4286" e_stop="4187"/>
            <exon e_start="3452" e_stop="3363"/>
            <exon e_start="3229" e_stop="3009"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.441" e_score="1.000"/>
          <exon-intron don_prob="0.697" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.848" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="0.975"/>
          <exon-intron don_prob="0.994" acc_prob="0.951" e_score="0.990"/>
          <exon-intron don_prob="0.980" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9087" e_stop="8757" e_length="331"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.991">
            <gDNA_intron_boundary i_start="8756" i_stop="7114" i_length="1643"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7113" e_stop="7033" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.441">
            <gDNA_intron_boundary i_start="7032" i_stop="6920" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6919" e_stop="6824" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.697" acc_prob="0.967">
            <gDNA_intron_boundary i_start="6823" i_stop="6732" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6731" e_stop="6648" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="6647" i_stop="6511" i_length="137"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6510" e_stop="6441" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="0.848" acc_prob="0.985">
            <gDNA_intron_boundary i_start="6440" i_stop="6302" i_length="139"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="6301" e_stop="6219" e_length="83"/>
          </exon>
          <intron i_serial="6" don_prob="0.973" acc_prob="0.995">
            <gDNA_intron_boundary i_start="6218" i_stop="4793" i_length="1426"/>
          </intron>
          <exon e_serial="7" e_score="0.975">
            <gDNA_exon_boundary e_start="4792" e_stop="4713" e_length="80"/>
          </exon>
          <intron i_serial="7" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4712" i_stop="4490" i_length="223"/>
          </intron>
          <exon e_serial="8" e_score="0.990">
            <gDNA_exon_boundary e_start="4489" e_stop="4391" e_length="99"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.951">
            <gDNA_intron_boundary i_start="4390" i_stop="4287" i_length="104"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="4286" e_stop="4187" e_length="100"/>
          </exon>
          <intron i_serial="9" don_prob="0.980" acc_prob="0.988">
            <gDNA_intron_boundary i_start="4186" i_stop="3453" i_length="734"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="3452" e_stop="3363" e_length="90"/>
          </exon>
          <intron i_serial="10" don_prob="0.997" acc_prob="0.975">
            <gDNA_intron_boundary i_start="3362" i_stop="3230" i_length="133"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="3229" e_stop="3009" e_length="221"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9087" stop="8757"/>
              <exon start="7113" stop="7033"/>
              <exon start="6919" stop="6882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9079" stop="8757"/>
              <exon start="7113" stop="7033"/>
              <exon start="6919" stop="6824"/>
              <exon start="6731" stop="6648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9077" stop="8757"/>
              <exon start="7113" stop="7033"/>
              <exon start="6919" stop="6824"/>
              <exon start="6731" stop="6653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9073" stop="8757"/>
              <exon start="7113" stop="7033"/>
              <exon start="6919" stop="6894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9069" stop="8757"/>
              <exon start="7113" stop="7033"/>
              <exon start="6919" stop="6824"/>
              <exon start="6731" stop="6648"/>
              <exon start="6510" stop="6441"/>
              <exon start="6301" stop="6219"/>
              <exon start="4792" stop="4762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9068" stop="8757"/>
              <exon start="7113" stop="7033"/>
              <exon start="6919" stop="6824"/>
              <exon start="6731" stop="6650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9068" stop="8757"/>
              <exon start="7113" stop="7033"/>
              <exon start="6919" stop="6826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9060" stop="8757"/>
              <exon start="7113" stop="7033"/>
              <exon start="6919" stop="6824"/>
              <exon start="6731" stop="6678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9039" stop="8757"/>
              <exon start="7113" stop="7033"/>
              <exon start="6919" stop="6824"/>
              <exon start="6731" stop="6648"/>
              <exon start="6510" stop="6467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9036" stop="8757"/>
              <exon start="7113" stop="7033"/>
              <exon start="6919" stop="6824"/>
              <exon start="6731" stop="6648"/>
              <exon start="6510" stop="6441"/>
              <exon start="6301" stop="6219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9036" stop="8757"/>
              <exon start="7113" stop="7033"/>
              <exon start="6919" stop="6824"/>
              <exon start="6731" stop="6648"/>
              <exon start="6510" stop="6491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9019" stop="8757"/>
              <exon start="7113" stop="7033"/>
              <exon start="6919" stop="6824"/>
              <exon start="6731" stop="6648"/>
              <exon start="6510" stop="6441"/>
              <exon start="6301" stop="6263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9017" stop="8757"/>
              <exon start="7113" stop="7033"/>
              <exon start="6919" stop="6824"/>
              <exon start="6731" stop="6672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8980" stop="8757"/>
              <exon start="7113" stop="7033"/>
              <exon start="6919" stop="6824"/>
              <exon start="6731" stop="6705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8932" stop="8757"/>
              <exon start="7113" stop="7033"/>
              <exon start="6919" stop="6824"/>
              <exon start="6731" stop="6648"/>
              <exon start="6510" stop="6441"/>
              <exon start="6301" stop="6219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8931" stop="8757"/>
              <exon start="7113" stop="7033"/>
              <exon start="6919" stop="6824"/>
              <exon start="6731" stop="6648"/>
              <exon start="6510" stop="6478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8891" stop="8757"/>
              <exon start="7113" stop="7033"/>
              <exon start="6919" stop="6824"/>
              <exon start="6731" stop="6648"/>
              <exon start="6510" stop="6476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8806" stop="8757"/>
              <exon start="7113" stop="7033"/>
              <exon start="6919" stop="6824"/>
              <exon start="6731" stop="6648"/>
              <exon start="6510" stop="6441"/>
              <exon start="6301" stop="6219"/>
              <exon start="4792" stop="4729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6906" stop="6824"/>
              <exon start="6731" stop="6648"/>
              <exon start="6510" stop="6441"/>
              <exon start="6301" stop="6219"/>
              <exon start="4792" stop="4713"/>
              <exon start="4489" stop="4391"/>
              <exon start="4286" stop="4230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6664" stop="6648"/>
              <exon start="6510" stop="6441"/>
              <exon start="6301" stop="6219"/>
              <exon start="4792" stop="4713"/>
              <exon start="4489" stop="4391"/>
              <exon start="4286" stop="4187"/>
              <exon start="3452" stop="3363"/>
              <exon start="3229" stop="3117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4786" stop="4713"/>
              <exon start="4489" stop="4391"/>
              <exon start="4286" stop="4187"/>
              <exon start="3452" stop="3363"/>
              <exon start="3229" stop="3112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4441" stop="4391"/>
              <exon start="4286" stop="4187"/>
              <exon start="3452" stop="3363"/>
              <exon start="3229" stop="3009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551695" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCGTTTAGCTTCACTACAAAACCTTCTTCCATTTTGCTCTTCTCCATTAGCTCCGCCGCCGACATCCTCTGCACTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAG : CCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAG : CTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACA : AGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAG : ATCGTCCAATATGCAAATGAGAAGGAATTTACTTCTGTTATTGTAGTCCACACCAATCGCCGTGAGCCAG : ATGCTCTTCTTGTCATTGGTTTACCTGATGGACCTACTGCTCATTTCAAGCTCTCAAAGCTCATGCTACGGAAGGATATCAAG : AATCATGGAAAGCCAACTAGTCACAAGCCTGAGCTGGTTTTGACCAACTTCACAACACGTTTGGGTCATCGAGTTGGGAG : GATGATACAGTCACTTTTTCCACAAGATCCCGAATTTCGTGGACGTCGAGTTGTGACCTTCCACAACCAGCGTGATTTCATATTTTTTCGCCATCATCG : CTACATTTTTGAAACCAAAGAGAGCAAACAGAAAGAATCAAAAGGTAAAAAAAGCAAGGATGAGAAGAACCCACAAGAAAGGACAATTGCCCGTCTGCAG : GAGTGTGGGCCTCGATTTACTCTCAAATTAATCAGTCTCCAGCATGGTACTTTTGATACTAAGGGTGGGGAATATGAATGGGTTCACAAG : CCGGAGATGGATACAAGTCGACGGAGATTTTTCCTGTGATAATGTTGGATGTTTCTGCTGCTGGGATTTCAAGGTCTTTGTACCCAAACCATGTTAAAGAAGAATACCAACTATCTGAGGCTGAAGTTCACTATAAAAGTTTTGATCTTTTCTAATTAACTGCTTTTTTTGTAATGGACTATCTCTTATAGTAATCTATTAAAGTAGAAAGATGGGTTTTA</gDNA_template>
            <first_frame> A  V  *  L  H  Y  K  T  F  F  H  F  A  L  L  H  *  L  R  R  R  H  P  L  H  Y  T  F  Y  G  E  K  T  E  L  E  R  R  W  W  R  G  R  R  R  R  E  A  D  E  R  E  K  G  E  R  E  A  G  G  K  R  K  Y  A  A  F  N  D  *  E  Q  G  E  K  S  S  C  T  C  *  V  E  A  A  E  E  G  *  E  E  E  E  G  *  S  S  *  S  C  *  E  K  S  T  *  A  R  G  G   : A  S  S  E  D  G  T  P  Y  D  *  E  Y  K  G  I  R  *  D  C  L  F  T  *  *  *  R   : A  I  C  W  Q  R  C  *  *  V  *  C  S  S  E  E  R  A  *  S  K  N  I  D  Y  N  I  P  L  *  L  Y   : K  R  T  S  I  Y  F  R  S  Y  F  C  D  S  *  C  S  L  L  *  T  R  N  I  *  P  E  K   : D  R  P  I  C  K  *  E  G  I  Y  F  C  Y  C  S  P  H  Q  S  P  *  A  R :   C  S  S  C  H  W  F  T  *  W  T  Y  C  S  F  Q  A  L  K  A  H  A  T  E  G  Y  Q   : E  S  W  K  A  N  *  S  Q  A  *  A  G  F  D  Q  L  H  N  T  F  G  S  S  S  W  E  :  D  D  T  V  T  F  S  T  R  S  R  I  S  W  T  S  S  C  D  L  P  Q  P  A  *  F  H  I  F  S  P  S  S  :  L  H  F  *  N  Q  R  E  Q  T  E  R  I  K  R  *  K  K  Q  G  *  E  E  P  T  R  K  D  N  C  P  S  A   : G  V  W  A  S  I  Y  S  Q  I  N  Q  S  P  A  W  Y  F  *  Y  *  G  W  G  I  *  M  G  S  Q   : A  G  D  G  Y  K  S  T  E  I  F  P  V  I  M  L  D  V  S  A  A  G  I  S  R  S  L  Y  P  N  H  V  K  E  E  Y  Q  L  S  E  A  E  V  H  Y  K  S  F  D  L  F  *  L  T  A  F  F  V  M  D  Y  L  L  *  *  S  I  K  V  E  R  W  V  L </first_frame>
            <second_frame>  P  F  S  F  T  T  K  P  S  S  I  L  L  F  S  I  S  S  A  A  D  I  L  C  T  T  L  S  M  G  R  K  R  N  L  S  E  D  G  G  G  E  D  E  E  E  R  P  M  K  E  R  R  V  K  E  K  Q  E  G  R  E  S  M  R  P  S  M  I  K  N  K  E  K  R  A  A  V  H  A  K  L  K  Q  Q  K  K  V  E  K  R  K  K  V  K  A  R  E  A  A  E  K  K  A  L  E  L  G  E  E  :  P  P  A  K  M  V  P  R  T  I  E  N  T  R  E  S  D  E  T  V  C  L  P  D  D  E  E  :  L  F  A  G  N  D  V  D  E  F  S  A  V  L  K  N  E  R  S  P  K  I  L  I  T  T  S  R  Y  N  S  T  :  R  G  P  A  F  I  S  D  L  I  S  V  I  P  N  A  H  Y  Y  K  R  G  T  Y  D  L  K  K  :  I  V  Q  Y  A  N  E  K  E  F  T  S  V  I  V  V  H  T  N  R  R  E  P   : D  A  L  L  V  I  G  L  P  D  G  P  T  A  H  F  K  L  S  K  L  M  L  R  K  D  I  K  :  N  H  G  K  P  T  S  H  K  P  E  L  V  L  T  N  F  T  T  R  L  G  H  R  V  G  R :   M  I  Q  S  L  F  P  Q  D  P  E  F  R  G  R  R  V  V  T  F  H  N  Q  R  D  F  I  F  F  R  H  H  R :   Y  I  F  E  T  K  E  S  K  Q  K  E  S  K  G  K  K  S  K  D  E  K  N  P  Q  E  R  T  I  A  R  L  Q  :  E  C  G  P  R  F  T  L  K  L  I  S  L  Q  H  G  T  F  D  T  K  G  G  E  Y  E  W  V  H  K  :  P  E  M  D  T  S  R  R  R  F  F  L  *  *  C  W  M  F  L  L  L  G  F  Q  G  L  C  T  Q  T  M  L  K  K  N  T  N  Y  L  R  L  K  F  T  I  K  V  L  I  F  S  N  *  L  L  F  L  *  W  T  I  S  Y  S  N  L  L  K  *  K  D  G  F   </second_frame>
            <third_frame>   R  L  A  S  L  Q  N  L  L  P  F  C  S  S  P  L  A  P  P  P  T  S  S  A  L  H  F  L  W  G  E  N  G  T  *  A  K  M  V  A  G  K  T  K  K  R  G  R  *  K  R  E  G  *  K  R  S  R  R  E  E  K  V  C  G  L  Q  *  L  R  T  R  R  K  E  Q  L  Y  M  L  S  *  S  S  R  R  R  L  R  R  G  R  R  L  K  L  V  K  L  L  R  K  K  H  L  S  *  G  R  S :   L  Q  R  R  W  Y  P  V  R  L  R  I  Q  G  N  Q  M  R  L  S  V  Y  L  M  M  K  S :   Y  L  L  A  T  M  L  M  S  L  V  Q  F  *  R  T  S  V  V  Q  K  Y  *  L  Q  H  P  V  I  T  L  Q :   E  D  Q  H  L  F  P  I  L  F  L  *  F  L  M  L  I  T  I  N  E  E  H  M  T  *  K  R :   S  S  N  M  Q  M  R  R  N  L  L  L  L  L  *  S  T  P  I  A  V  S  Q  :  M  L  F  L  S  L  V  Y  L  M  D  L  L  L  I  S  S  S  Q  S  S  C  Y  G  R  I  S  R :   I  M  E  S  Q  L  V  T  S  L  S  W  F  *  P  T  S  Q  H  V  W  V  I  E  L  G   : G  *  Y  S  H  F  F  H  K  I  P  N  F  V  D  V  E  L  *  P  S  T  T  S  V  I  S  Y  F  F  A  I  I   : A  T  F  L  K  P  K  R  A  N  R  K  N  Q  K  V  K  K  A  R  M  R  R  T  H  K  K  G  Q  L  P  V  C  R :   S  V  G  L  D  L  L  S  N  *  S  V  S  S  M  V  L  L  I  L  R  V  G  N  M  N  G  F  T  S :   R  R  W  I  Q  V  D  G  D  F  S  C  D  N  V  G  C  F  C  C  W  D  F  K  V  F  V  P  K  P  C  *  R  R  I  P  T  I  *  G  *  S  S  L  *  K  F  *  S  F  L  I  N  C  F  F  C  N  G  L  S  L  I  V  I  Y  *  S  R  K  M  G  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9086" stop="8757"/>
                    <exon start="7113" stop="7033"/>
                    <exon start="6919" stop="6824"/>
                    <exon start="6731" stop="6648"/>
                    <exon start="6510" stop="6441"/>
                    <exon start="6301" stop="6219"/>
                    <exon start="4792" stop="4713"/>
                    <exon start="4489" stop="4391"/>
                    <exon start="4286" stop="4187"/>
                    <exon start="3452" stop="3363"/>
                    <exon start="3229" stop="3191"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1149</number_coding_nucleotides>
                  <number_encoded_amino_acids>383</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFSFTTKPSSILLFSISSAADILCTTLSMGRKRNLSEDGGGEDEEERPMKERRVKEKQEGRESMRPSMIKNKEKRAAVHAKLKQQKKVEKRKKVKAREAAEKKALELGEEPPAKMVPRTIENTRESDETVCLPDDEELFAGNDVDEFSAVLKNERSPKILITTSRYNSTRGPAFISDLISVIPNAHYYKRGTYDLKKIVQYANEKEFTSVIVVHTNRREPDALLVIGLPDGPTAHFKLSKLMLRKDIKNHGKPTSHKPELVLTNFTTRLGHRVGRMIQSLFPQDPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKQKESKGKKSKDEKNPQERTIARLQECGPRFTLKLISLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9087" e_stop="8757"/>
            <exon e_start="7113" e_stop="7033"/>
            <exon e_start="6919" e_stop="6816"/>
            <exon e_start="6731" e_stop="6648"/>
            <exon e_start="6510" e_stop="6441"/>
            <exon e_start="6301" e_stop="6219"/>
            <exon e_start="4792" e_stop="4713"/>
            <exon e_start="4489" e_stop="4391"/>
            <exon e_start="4286" e_stop="4187"/>
            <exon e_start="3452" e_stop="3363"/>
            <exon e_start="3229" e_stop="3009"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.441" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.848" acc_prob="0.985" e_score="0.970"/>
          <exon-intron don_prob="0.973" acc_prob="0.995" e_score="0.783"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="0.950"/>
          <exon-intron don_prob="0.994" acc_prob="0.951" e_score="0.990"/>
          <exon-intron don_prob="0.980" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9087" e_stop="8757" e_length="331"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.991">
            <gDNA_intron_boundary i_start="8756" i_stop="7114" i_length="1643"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7113" e_stop="7033" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.441">
            <gDNA_intron_boundary i_start="7032" i_stop="6920" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6919" e_stop="6816" e_length="104"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.967">
            <gDNA_intron_boundary i_start="6815" i_stop="6732" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6731" e_stop="6648" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="6647" i_stop="6511" i_length="137"/>
          </intron>
          <exon e_serial="5" e_score="0.970">
            <gDNA_exon_boundary e_start="6510" e_stop="6441" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="0.848" acc_prob="0.985">
            <gDNA_intron_boundary i_start="6440" i_stop="6302" i_length="139"/>
          </intron>
          <exon e_serial="6" e_score="0.783">
            <gDNA_exon_boundary e_start="6301" e_stop="6219" e_length="83"/>
          </exon>
          <intron i_serial="6" don_prob="0.973" acc_prob="0.995">
            <gDNA_intron_boundary i_start="6218" i_stop="4793" i_length="1426"/>
          </intron>
          <exon e_serial="7" e_score="0.950">
            <gDNA_exon_boundary e_start="4792" e_stop="4713" e_length="80"/>
          </exon>
          <intron i_serial="7" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4712" i_stop="4490" i_length="223"/>
          </intron>
          <exon e_serial="8" e_score="0.990">
            <gDNA_exon_boundary e_start="4489" e_stop="4391" e_length="99"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.951">
            <gDNA_intron_boundary i_start="4390" i_stop="4287" i_length="104"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="4286" e_stop="4187" e_length="100"/>
          </exon>
          <intron i_serial="9" don_prob="0.980" acc_prob="0.988">
            <gDNA_intron_boundary i_start="4186" i_stop="3453" i_length="734"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="3452" e_stop="3363" e_length="90"/>
          </exon>
          <intron i_serial="10" don_prob="0.997" acc_prob="0.975">
            <gDNA_intron_boundary i_start="3362" i_stop="3230" i_length="133"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="3229" e_stop="3009" e_length="221"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9087" stop="8757"/>
              <exon start="7113" stop="7033"/>
              <exon start="6919" stop="6882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9073" stop="8757"/>
              <exon start="7113" stop="7033"/>
              <exon start="6919" stop="6894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9068" stop="8757"/>
              <exon start="7113" stop="7033"/>
              <exon start="6919" stop="6826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9067" stop="8757"/>
              <exon start="7113" stop="7033"/>
              <exon start="6919" stop="6816"/>
              <exon start="6731" stop="6648"/>
              <exon start="6510" stop="6444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6664" stop="6648"/>
              <exon start="6510" stop="6441"/>
              <exon start="6301" stop="6219"/>
              <exon start="4792" stop="4713"/>
              <exon start="4489" stop="4391"/>
              <exon start="4286" stop="4187"/>
              <exon start="3452" stop="3363"/>
              <exon start="3229" stop="3117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4786" stop="4713"/>
              <exon start="4489" stop="4391"/>
              <exon start="4286" stop="4187"/>
              <exon start="3452" stop="3363"/>
              <exon start="3229" stop="3112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4441" stop="4391"/>
              <exon start="4286" stop="4187"/>
              <exon start="3452" stop="3363"/>
              <exon start="3229" stop="3009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551695" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCGTTTAGCTTCACTACAAAACCTTCTTCCATTTTGCTCTTCTCCATTAGCTCCGCCGCCGACATCCTCTGCACTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAG : CCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAG : CTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACAGTAAGCTT : AGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAG : ATCGTCCAATATGCAAATGAGAAGGAATTTACTTCTGTTATTGTAGTCCACACCAATCGCCGTGAGCCAG : ATGCTCTTCTTGTCATTGGTTTACCTGATGGACCTACTGCTCATTTCAAGCTCTCAAAGCTCATGCTACGGAAGGATATCAAG : AATCATGGAAAGCCAACTAGTCACAAGCCTGAGCTGGTTTTGACCAACTTCACAACACGTTTGGGTCATCGAGTTGGGAG : GATGATACAGTCACTTTTTCCACAAGATCCCGAATTTCGTGGACGTCGAGTTGTGACCTTCCACAACCAGCGTGATTTCATATTTTTTCGCCATCATCG : CTACATTTTTGAAACCAAAGAGAGCAAACAGAAAGAATCAAAAGGTAAAAAAAGCAAGGATGAGAAGAACCCACAAGAAAGGACAATTGCCCGTCTGCAG : GAGTGTGGGCCTCGATTTACTCTCAAATTAATCAGTCTCCAGCATGGTACTTTTGATACTAAGGGTGGGGAATATGAATGGGTTCACAAG : CCGGAGATGGATACAAGTCGACGGAGATTTTTCCTGTGATAATGTTGGATGTTTCTGCTGCTGGGATTTCAAGGTCTTTGTACCCAAACCATGTTAAAGAAGAATACCAACTATCTGAGGCTGAAGTTCACTATAAAAGTTTTGATCTTTTCTAATTAACTGCTTTTTTTGTAATGGACTATCTCTTATAGTAATCTATTAAAGTAGAAAGATGGGTTTTA</gDNA_template>
            <first_frame> A  V  *  L  H  Y  K  T  F  F  H  F  A  L  L  H  *  L  R  R  R  H  P  L  H  Y  T  F  Y  G  E  K  T  E  L  E  R  R  W  W  R  G  R  R  R  R  E  A  D  E  R  E  K  G  E  R  E  A  G  G  K  R  K  Y  A  A  F  N  D  *  E  Q  G  E  K  S  S  C  T  C  *  V  E  A  A  E  E  G  *  E  E  E  E  G  *  S  S  *  S  C  *  E  K  S  T  *  A  R  G  G   : A  S  S  E  D  G  T  P  Y  D  *  E  Y  K  G  I  R  *  D  C  L  F  T  *  *  *  R   : A  I  C  W  Q  R  C  *  *  V  *  C  S  S  E  E  R  A  *  S  K  N  I  D  Y  N  I  P  L  *  L  Y  S  K  L  :  R  G  P  A  F  I  S  D  L  I  S  V  I  P  N  A  H  Y  Y  K  R  G  T  Y  D  L  K  K  :  I  V  Q  Y  A  N  E  K  E  F  T  S  V  I  V  V  H  T  N  R  R  E  P   : D  A  L  L  V  I  G  L  P  D  G  P  T  A  H  F  K  L  S  K  L  M  L  R  K  D  I  K  :  N  H  G  K  P  T  S  H  K  P  E  L  V  L  T  N  F  T  T  R  L  G  H  R  V  G  R :   M  I  Q  S  L  F  P  Q  D  P  E  F  R  G  R  R  V  V  T  F  H  N  Q  R  D  F  I  F  F  R  H  H  R :   Y  I  F  E  T  K  E  S  K  Q  K  E  S  K  G  K  K  S  K  D  E  K  N  P  Q  E  R  T  I  A  R  L  Q  :  E  C  G  P  R  F  T  L  K  L  I  S  L  Q  H  G  T  F  D  T  K  G  G  E  Y  E  W  V  H  K  :  P  E  M  D  T  S  R  R  R  F  F  L  *  *  C  W  M  F  L  L  L  G  F  Q  G  L  C  T  Q  T  M  L  K  K  N  T  N  Y  L  R  L  K  F  T  I  K  V  L  I  F  S  N  *  L  L  F  L  *  W  T  I  S  Y  S  N  L  L  K  *  K  D  G  F   </first_frame>
            <second_frame>  P  F  S  F  T  T  K  P  S  S  I  L  L  F  S  I  S  S  A  A  D  I  L  C  T  T  L  S  M  G  R  K  R  N  L  S  E  D  G  G  G  E  D  E  E  E  R  P  M  K  E  R  R  V  K  E  K  Q  E  G  R  E  S  M  R  P  S  M  I  K  N  K  E  K  R  A  A  V  H  A  K  L  K  Q  Q  K  K  V  E  K  R  K  K  V  K  A  R  E  A  A  E  K  K  A  L  E  L  G  E  E  :  P  P  A  K  M  V  P  R  T  I  E  N  T  R  E  S  D  E  T  V  C  L  P  D  D  E  E  :  L  F  A  G  N  D  V  D  E  F  S  A  V  L  K  N  E  R  S  P  K  I  L  I  T  T  S  R  Y  N  S  T  V  S  L :   E  D  Q  H  L  F  P  I  L  F  L  *  F  L  M  L  I  T  I  N  E  E  H  M  T  *  K  R :   S  S  N  M  Q  M  R  R  N  L  L  L  L  L  *  S  T  P  I  A  V  S  Q  :  M  L  F  L  S  L  V  Y  L  M  D  L  L  L  I  S  S  S  Q  S  S  C  Y  G  R  I  S  R :   I  M  E  S  Q  L  V  T  S  L  S  W  F  *  P  T  S  Q  H  V  W  V  I  E  L  G   : G  *  Y  S  H  F  F  H  K  I  P  N  F  V  D  V  E  L  *  P  S  T  T  S  V  I  S  Y  F  F  A  I  I   : A  T  F  L  K  P  K  R  A  N  R  K  N  Q  K  V  K  K  A  R  M  R  R  T  H  K  K  G  Q  L  P  V  C  R :   S  V  G  L  D  L  L  S  N  *  S  V  S  S  M  V  L  L  I  L  R  V  G  N  M  N  G  F  T  S :   R  R  W  I  Q  V  D  G  D  F  S  C  D  N  V  G  C  F  C  C  W  D  F  K  V  F  V  P  K  P  C  *  R  R  I  P  T  I  *  G  *  S  S  L  *  K  F  *  S  F  L  I  N  C  F  F  C  N  G  L  S  L  I  V  I  Y  *  S  R  K  M  G  F  </second_frame>
            <third_frame>   R  L  A  S  L  Q  N  L  L  P  F  C  S  S  P  L  A  P  P  P  T  S  S  A  L  H  F  L  W  G  E  N  G  T  *  A  K  M  V  A  G  K  T  K  K  R  G  R  *  K  R  E  G  *  K  R  S  R  R  E  E  K  V  C  G  L  Q  *  L  R  T  R  R  K  E  Q  L  Y  M  L  S  *  S  S  R  R  R  L  R  R  G  R  R  L  K  L  V  K  L  L  R  K  K  H  L  S  *  G  R  S :   L  Q  R  R  W  Y  P  V  R  L  R  I  Q  G  N  Q  M  R  L  S  V  Y  L  M  M  K  S :   Y  L  L  A  T  M  L  M  S  L  V  Q  F  *  R  T  S  V  V  Q  K  Y  *  L  Q  H  P  V  I  T  L  Q  *  A   : *  R  T  S  I  Y  F  R  S  Y  F  C  D  S  *  C  S  L  L  *  T  R  N  I  *  P  E  K   : D  R  P  I  C  K  *  E  G  I  Y  F  C  Y  C  S  P  H  Q  S  P  *  A  R :   C  S  S  C  H  W  F  T  *  W  T  Y  C  S  F  Q  A  L  K  A  H  A  T  E  G  Y  Q   : E  S  W  K  A  N  *  S  Q  A  *  A  G  F  D  Q  L  H  N  T  F  G  S  S  S  W  E  :  D  D  T  V  T  F  S  T  R  S  R  I  S  W  T  S  S  C  D  L  P  Q  P  A  *  F  H  I  F  S  P  S  S  :  L  H  F  *  N  Q  R  E  Q  T  E  R  I  K  R  *  K  K  Q  G  *  E  E  P  T  R  K  D  N  C  P  S  A   : G  V  W  A  S  I  Y  S  Q  I  N  Q  S  P  A  W  Y  F  *  Y  *  G  W  G  I  *  M  G  S  Q   : A  G  D  G  Y  K  S  T  E  I  F  P  V  I  M  L  D  V  S  A  A  G  I  S  R  S  L  Y  P  N  H  V  K  E  E  Y  Q  L  S  E  A  E  V  H  Y  K  S  F  D  L  F  *  L  T  A  F  F  V  M  D  Y  L  L  *  *  S  I  K  V  E  R  W  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6830" stop="6816"/>
                    <exon start="6731" stop="6648"/>
                    <exon start="6510" stop="6441"/>
                    <exon start="6301" stop="6219"/>
                    <exon start="4792" stop="4713"/>
                    <exon start="4489" stop="4391"/>
                    <exon start="4286" stop="4187"/>
                    <exon start="3452" stop="3363"/>
                    <exon start="3229" stop="3191"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYSKLRGPAFISDLISVIPNAHYYKRGTYDLKKIVQYANEKEFTSVIVVHTNRREPDALLVIGLPDGPTAHFKLSKLMLRKDIKNHGKPTSHKPELVLTNFTTRLGHRVGRMIQSLFPQDPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKQKESKGKKSKDEKNPQERTIARLQECGPRFTLKLISLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="9079" e_stop="8757"/>
            <exon e_start="7113" e_stop="6824"/>
            <exon e_start="6731" e_stop="6648"/>
            <exon e_start="6510" e_stop="6441"/>
            <exon e_start="6301" e_stop="6219"/>
            <exon e_start="4792" e_stop="4713"/>
            <exon e_start="4489" e_stop="4391"/>
            <exon e_start="4286" e_stop="4187"/>
            <exon e_start="3452" e_stop="3363"/>
            <exon e_start="3229" e_stop="3009"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.991" e_score="0.944"/>
          <exon-intron don_prob="0.697" acc_prob="0.967" e_score="0.934"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.848" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.951" e_score="0.990"/>
          <exon-intron don_prob="0.980" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="9079" e_stop="8757" e_length="323"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.991">
            <gDNA_intron_boundary i_start="8756" i_stop="7114" i_length="1643"/>
          </intron>
          <exon e_serial="2" e_score="0.934">
            <gDNA_exon_boundary e_start="7113" e_stop="6824" e_length="290"/>
          </exon>
          <intron i_serial="2" don_prob="0.697" acc_prob="0.967">
            <gDNA_intron_boundary i_start="6823" i_stop="6732" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6731" e_stop="6648" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="6647" i_stop="6511" i_length="137"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6510" e_stop="6441" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.848" acc_prob="0.985">
            <gDNA_intron_boundary i_start="6440" i_stop="6302" i_length="139"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6301" e_stop="6219" e_length="83"/>
          </exon>
          <intron i_serial="5" don_prob="0.973" acc_prob="0.995">
            <gDNA_intron_boundary i_start="6218" i_stop="4793" i_length="1426"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="4792" e_stop="4713" e_length="80"/>
          </exon>
          <intron i_serial="6" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4712" i_stop="4490" i_length="223"/>
          </intron>
          <exon e_serial="7" e_score="0.990">
            <gDNA_exon_boundary e_start="4489" e_stop="4391" e_length="99"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.951">
            <gDNA_intron_boundary i_start="4390" i_stop="4287" i_length="104"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="4286" e_stop="4187" e_length="100"/>
          </exon>
          <intron i_serial="8" don_prob="0.980" acc_prob="0.988">
            <gDNA_intron_boundary i_start="4186" i_stop="3453" i_length="734"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="3452" e_stop="3363" e_length="90"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.975">
            <gDNA_intron_boundary i_start="3362" i_stop="3230" i_length="133"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="3229" e_stop="3009" e_length="221"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9079" stop="8757"/>
              <exon start="7113" stop="6870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6929" stop="6824"/>
              <exon start="6731" stop="6648"/>
              <exon start="6510" stop="6441"/>
              <exon start="6301" stop="6219"/>
              <exon start="4792" stop="4713"/>
              <exon start="4489" stop="4442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6906" stop="6824"/>
              <exon start="6731" stop="6648"/>
              <exon start="6510" stop="6441"/>
              <exon start="6301" stop="6219"/>
              <exon start="4792" stop="4713"/>
              <exon start="4489" stop="4391"/>
              <exon start="4286" stop="4230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6664" stop="6648"/>
              <exon start="6510" stop="6441"/>
              <exon start="6301" stop="6219"/>
              <exon start="4792" stop="4713"/>
              <exon start="4489" stop="4391"/>
              <exon start="4286" stop="4187"/>
              <exon start="3452" stop="3363"/>
              <exon start="3229" stop="3117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4786" stop="4713"/>
              <exon start="4489" stop="4391"/>
              <exon start="4286" stop="4187"/>
              <exon start="3452" stop="3363"/>
              <exon start="3229" stop="3112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4441" stop="4391"/>
              <exon start="4286" stop="4187"/>
              <exon start="3452" stop="3363"/>
              <exon start="3229" stop="3009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551695" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTTCACTACAAAACCTTCTTCCATTTTGCTCTTCTCCATTAGCTCCGCCGCCGACATCCTCTGCACTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAG : CCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAGGTTTTCGATTATTCTTGTTTGATTCTTCAAGTTAATAGTGAAATATATGTAGTTTTATCACTGGAGGTTTGGCCATTAAATATTCTGGTGTTCCTCCTGATTTGTGTTTGAAGCTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACA : AGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAG : ATCGTCCAATATGCAAATGAGAAGGAATTTACTTCTGTTATTGTAGTCCACACCAATCGCCGTGAGCCAG : ATGCTCTTCTTGTCATTGGTTTACCTGATGGACCTACTGCTCATTTCAAGCTCTCAAAGCTCATGCTACGGAAGGATATCAAG : AATCATGGAAAGCCAACTAGTCACAAGCCTGAGCTGGTTTTGACCAACTTCACAACACGTTTGGGTCATCGAGTTGGGAG : GATGATACAGTCACTTTTTCCACAAGATCCCGAATTTCGTGGACGTCGAGTTGTGACCTTCCACAACCAGCGTGATTTCATATTTTTTCGCCATCATCG : CTACATTTTTGAAACCAAAGAGAGCAAACAGAAAGAATCAAAAGGTAAAAAAAGCAAGGATGAGAAGAACCCACAAGAAAGGACAATTGCCCGTCTGCAG : GAGTGTGGGCCTCGATTTACTCTCAAATTAATCAGTCTCCAGCATGGTACTTTTGATACTAAGGGTGGGGAATATGAATGGGTTCACAAG : CCGGAGATGGATACAAGTCGACGGAGATTTTTCCTGTGATAATGTTGGATGTTTCTGCTGCTGGGATTTCAAGGTCTTTGTACCCAAACCATGTTAAAGAAGAATACCAACTATCTGAGGCTGAAGTTCACTATAAAAGTTTTGATCTTTTCTAATTAACTGCTTTTTTTGTAATGGACTATCTCTTATAGTAATCTATTAAAGTAGAAAGATGGGTTTTA</gDNA_template>
            <first_frame> A  S  L  Q  N  L  L  P  F  C  S  S  P  L  A  P  P  P  T  S  S  A  L  H  F  L  W  G  E  N  G  T  *  A  K  M  V  A  G  K  T  K  K  R  G  R  *  K  R  E  G  *  K  R  S  R  R  E  E  K  V  C  G  L  Q  *  L  R  T  R  R  K  E  Q  L  Y  M  L  S  *  S  S  R  R  R  L  R  R  G  R  R  L  K  L  V  K  L  L  R  K  K  H  L  S  *  G  R  S :   L  Q  R  R  W  Y  P  V  R  L  R  I  Q  G  N  Q  M  R  L  S  V  Y  L  M  M  K  R  F  S  I  I  L  V  *  F  F  K  L  I  V  K  Y  M  *  F  Y  H  W  R  F  G  H  *  I  F  W  C  S  S  *  F  V  F  E  A  I  C  W  Q  R  C  *  *  V  *  C  S  S  E  E  R  A  *  S  K  N  I  D  Y  N  I  P  L  *  L  Y   : K  R  T  S  I  Y  F  R  S  Y  F  C  D  S  *  C  S  L  L  *  T  R  N  I  *  P  E  K   : D  R  P  I  C  K  *  E  G  I  Y  F  C  Y  C  S  P  H  Q  S  P  *  A  R :   C  S  S  C  H  W  F  T  *  W  T  Y  C  S  F  Q  A  L  K  A  H  A  T  E  G  Y  Q   : E  S  W  K  A  N  *  S  Q  A  *  A  G  F  D  Q  L  H  N  T  F  G  S  S  S  W  E  :  D  D  T  V  T  F  S  T  R  S  R  I  S  W  T  S  S  C  D  L  P  Q  P  A  *  F  H  I  F  S  P  S  S  :  L  H  F  *  N  Q  R  E  Q  T  E  R  I  K  R  *  K  K  Q  G  *  E  E  P  T  R  K  D  N  C  P  S  A   : G  V  W  A  S  I  Y  S  Q  I  N  Q  S  P  A  W  Y  F  *  Y  *  G  W  G  I  *  M  G  S  Q   : A  G  D  G  Y  K  S  T  E  I  F  P  V  I  M  L  D  V  S  A  A  G  I  S  R  S  L  Y  P  N  H  V  K  E  E  Y  Q  L  S  E  A  E  V  H  Y  K  S  F  D  L  F  *  L  T  A  F  F  V  M  D  Y  L  L  *  *  S  I  K  V  E  R  W  V  L </first_frame>
            <second_frame>  L  H  Y  K  T  F  F  H  F  A  L  L  H  *  L  R  R  R  H  P  L  H  Y  T  F  Y  G  E  K  T  E  L  E  R  R  W  W  R  G  R  R  R  R  E  A  D  E  R  E  K  G  E  R  E  A  G  G  K  R  K  Y  A  A  F  N  D  *  E  Q  G  E  K  S  S  C  T  C  *  V  E  A  A  E  E  G  *  E  E  E  E  G  *  S  S  *  S  C  *  E  K  S  T  *  A  R  G  G   : A  S  S  E  D  G  T  P  Y  D  *  E  Y  K  G  I  R  *  D  C  L  F  T  *  *  *  R  G  F  R  L  F  L  F  D  S  S  S  *  *  *  N  I  C  S  F  I  T  G  G  L  A  I  K  Y  S  G  V  P  P  D  L  C  L  K  L  F  A  G  N  D  V  D  E  F  S  A  V  L  K  N  E  R  S  P  K  I  L  I  T  T  S  R  Y  N  S  T  :  R  G  P  A  F  I  S  D  L  I  S  V  I  P  N  A  H  Y  Y  K  R  G  T  Y  D  L  K  K  :  I  V  Q  Y  A  N  E  K  E  F  T  S  V  I  V  V  H  T  N  R  R  E  P   : D  A  L  L  V  I  G  L  P  D  G  P  T  A  H  F  K  L  S  K  L  M  L  R  K  D  I  K  :  N  H  G  K  P  T  S  H  K  P  E  L  V  L  T  N  F  T  T  R  L  G  H  R  V  G  R :   M  I  Q  S  L  F  P  Q  D  P  E  F  R  G  R  R  V  V  T  F  H  N  Q  R  D  F  I  F  F  R  H  H  R :   Y  I  F  E  T  K  E  S  K  Q  K  E  S  K  G  K  K  S  K  D  E  K  N  P  Q  E  R  T  I  A  R  L  Q  :  E  C  G  P  R  F  T  L  K  L  I  S  L  Q  H  G  T  F  D  T  K  G  G  E  Y  E  W  V  H  K  :  P  E  M  D  T  S  R  R  R  F  F  L  *  *  C  W  M  F  L  L  L  G  F  Q  G  L  C  T  Q  T  M  L  K  K  N  T  N  Y  L  R  L  K  F  T  I  K  V  L  I  F  S  N  *  L  L  F  L  *  W  T  I  S  Y  S  N  L  L  K  *  K  D  G  F   </second_frame>
            <third_frame>   F  T  T  K  P  S  S  I  L  L  F  S  I  S  S  A  A  D  I  L  C  T  T  L  S  M  G  R  K  R  N  L  S  E  D  G  G  G  E  D  E  E  E  R  P  M  K  E  R  R  V  K  E  K  Q  E  G  R  E  S  M  R  P  S  M  I  K  N  K  E  K  R  A  A  V  H  A  K  L  K  Q  Q  K  K  V  E  K  R  K  K  V  K  A  R  E  A  A  E  K  K  A  L  E  L  G  E  E  :  P  P  A  K  M  V  P  R  T  I  E  N  T  R  E  S  D  E  T  V  C  L  P  D  D  E  E  V  F  D  Y  S  C  L  I  L  Q  V  N  S  E  I  Y  V  V  L  S  L  E  V  W  P  L  N  I  L  V  F  L  L  I  C  V  *  S  Y  L  L  A  T  M  L  M  S  L  V  Q  F  *  R  T  S  V  V  Q  K  Y  *  L  Q  H  P  V  I  T  L  Q :   E  D  Q  H  L  F  P  I  L  F  L  *  F  L  M  L  I  T  I  N  E  E  H  M  T  *  K  R :   S  S  N  M  Q  M  R  R  N  L  L  L  L  L  *  S  T  P  I  A  V  S  Q  :  M  L  F  L  S  L  V  Y  L  M  D  L  L  L  I  S  S  S  Q  S  S  C  Y  G  R  I  S  R :   I  M  E  S  Q  L  V  T  S  L  S  W  F  *  P  T  S  Q  H  V  W  V  I  E  L  G   : G  *  Y  S  H  F  F  H  K  I  P  N  F  V  D  V  E  L  *  P  S  T  T  S  V  I  S  Y  F  F  A  I  I   : A  T  F  L  K  P  K  R  A  N  R  K  N  Q  K  V  K  K  A  R  M  R  R  T  H  K  K  G  Q  L  P  V  C  R :   S  V  G  L  D  L  L  S  N  *  S  V  S  S  M  V  L  L  I  L  R  V  G  N  M  N  G  F  T  S :   R  R  W  I  Q  V  D  G  D  F  S  C  D  N  V  G  C  F  C  C  W  D  F  K  V  F  V  P  K  P  C  *  R  R  I  P  T  I  *  G  *  S  S  L  *  K  F  *  S  F  L  I  N  C  F  F  C  N  G  L  S  L  I  V  I  Y  *  S  R  K  M  G  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6991" stop="6824"/>
                    <exon start="6731" stop="6648"/>
                    <exon start="6510" stop="6441"/>
                    <exon start="6301" stop="6219"/>
                    <exon start="4792" stop="4713"/>
                    <exon start="4489" stop="4391"/>
                    <exon start="4286" stop="4187"/>
                    <exon start="3452" stop="3363"/>
                    <exon start="3229" stop="3191"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>810</number_coding_nucleotides>
                  <number_encoded_amino_acids>270</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NICSFITGGLAIKYSGVPPDLCLKLFAGNDVDEFSAVLKNERSPKILITTSRYNSTRGPAFISDLISVIPNAHYYKRGTYDLKKIVQYANEKEFTSVIVVHTNRREPDALLVIGLPDGPTAHFKLSKLMLRKDIKNHGKPTSHKPELVLTNFTTRLGHRVGRMIQSLFPQDPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKQKESKGKKSKDEKNPQERTIARLQECGPRFTLKLISLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="16974" PGL_stop="14425"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16974" e_stop="16706"/>
            <exon e_start="16266" e_stop="16163"/>
            <exon e_start="16076" e_stop="15859"/>
            <exon e_start="15169" e_stop="14425"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.992" e_score="0.996"/>
          <exon-intron don_prob="0.000" acc_prob="0.986" e_score="0.990"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="16974" e_stop="16706" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.992">
            <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="16266" e_stop="16163" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16076" e_stop="15859" e_length="218"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="15858" i_stop="15170" i_length="689"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="15169" e_stop="14425" e_length="745"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16974" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="14786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16974" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="14978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16974" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="15010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16974" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="15010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16974" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="15113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16974" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16974" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16974" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16973" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16969" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16969" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16968" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="15010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16968" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="15059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16968" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16967" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="15115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16967" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16967" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16966" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="14966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16966" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16965" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16961" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="15115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16957" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="15059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16957" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16951" stop="16710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16947" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="15053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16947" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="15094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16936" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16932" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16809" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="15065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16778" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="16056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16735" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="15133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="14761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16256" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="15084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16222" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="14925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16221" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="14792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15165" stop="14978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15164" stop="14609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14957" stop="14439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14957" stop="14505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14903" stop="14425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14703" stop="14427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398569" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAACACTCACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG : GAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTAT : CTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCAT : ATTTTTTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTCTATGGTTCAATTTGGGATGCATCATCTTGGGCAACGGAGGAAGGACGAATTAAAGCGGATTATCGATACCAACCTTTTATCGGAAAATATAGTAATAATTTCAAGGTTGAAGGTTGCGCGGCCTACGAGAGTCCCTCTTGTCGTCGAGCGCCTTCTAGCTCTCCTTCGGGGGGTGGAGGGTTGAGTCGACAACAGATAGAGGCTATGTTGTGGGTGCATAGGAACTATAAGGTGTACGATTATTGTAGGGATCCTAGGAGGGACCATACTCACACACCTGAGTGTTAGTGTGTGAACGATCGTAAAATAAAAAAGATATTAAATTGTATCGAATTTATCGTTTGAATATAAGGGGGGAAAAAAGTAGCCTTGAGATGGTCCCATTTGCCATTAATTGTTGCAAAAAGTTGTTGAAGCGTCCAAGGTGTTCCTTTTTTTTTTTTGATTGAAATTTATATAAATGTATTAAAAATGTTTGATTTAAGTTTCATGGGAGAAAAAAAAGAGTCAAGAATATTGAAGAATTATAGAAGATATATCTTGCCCTATTTTCTCATGAATTGCTTTTAATTGTAATTTTTATTTGATCAAAGTGTGTATTTGTTTCTTTATTTGTGATTGTTGAAGAAAAAAATATATATATATTATATTAGCCAAAAGAAAATC</gDNA_template>
            <first_frame> L  T  L  T  Q  H  Q  S  T  I  K  T  T  F  W  I  L  Y  P  N  N  Y  Y  G  I  P  S  L  F  T  F  I  F  L  T  Q  F  K  I  N  Q  C  S  R  S  P  F  T  W  L  L  S  *  F  *  G  T  I  Y  R  I  *  P  R  F  *  K  P  L  G  S  S  T  S  I  I  G  P  K  Y  L  N  Y  M  A  *  *  K  F  R :   R  K  W  F  *  I  S  K  E  L  S  F  W  L  F  W  E  *  Y  *  A  T  T  W  F  Y  C  W  N  Y  Y  F  F  L   : S  F  K  *  S  R  L  S  G  E  P  *  *  N  *  Y  *  I  S  W  N  N  T  K  Q  A  I  Y  F  T  N  K  C  V  Y  K  R  K  W  R  W  K  Y  Y  W  K  R  N  E  I  S  S  L  V  *  S  N  K  R  L  S  Q  L  C  N  P  L  G  P  Q  *  D  H  :  I  F  C  R  *  C  P  Y  *  K  I  P  *  K  K  *  C  N  I  S  T  K  T  Y  V  C  L  W  F  N  L  G  C  I  I  L  G  N  G  G  R  T  N  *  S  G  L  S  I  P  T  F  Y  R  K  I  *  *  *  F  Q  G  *  R  L  R  G  L  R  E  S  L  L  S  S  S  A  F  *  L  S  F  G  G  W  R  V  E  S  T  T  D  R  G  Y  V  V  G  A  *  E  L  *  G  V  R  L  L  *  G  S  *  E  G  P  Y  S  H  T  *  V  L  V  C  E  R  S  *  N  K  K  D  I  K  L  Y  R  I  Y  R  L  N  I  R  G  E  K  S  S  L  E  M  V  P  F  A  I  N  C  C  K  K  L  L  K  R  P  R  C  S  F  F  F  F  D  *  N  L  Y  K  C  I  K  N  V  *  F  K  F  H  G  R  K  K  R  V  K  N  I  E  E  L  *  K  I  Y  L  A  L  F  S  H  E  L  L  L  I  V  I  F  I  *  S  K  C  V  F  V  S  L  F  V  I  V  E  E  K  N  I  Y  I  L  Y  *  P  K  E  N  </first_frame>
            <second_frame>  *  H  S  L  N  T  K  V  P  L  K  Q  L  F  G  F  Y  I  Q  T  I  I  M  E  F  L  L  Y  L  L  L  F  F  L  L  N  S  R  L  I  N  A  Q  G  P  P  S  P  G  Y  Y  P  S  S  R  A  Q  S  I  G  F  N  Q  G  F  R  N  L  W  G  P  Q  H  Q  S  L  D  Q  S  T  L  T  I  W  L  D  K  N  S   : G  G  S  G  F  K  S  L  K  N  Y  R  S  G  Y  F  G  S  S  I  K  L  Q  P  G  F  T  A  G  I  I  T  S  F  Y  :  L  S  N  N  Q  D  Y  P  G  N  H  D  E  I  D  I  E  F  L  G  T  T  P  N  K  P  Y  T  L  Q  T  N  V  Y  I  R  G  S  G  D  G  N  I  I  G  R  E  M  K  F  H  L  W  F  D  P  T  K  D  Y  H  N  Y  A  I  L  W  D  P  N  E  I  I :   F  F  V  D  D  V  P  I  R  R  Y  P  K  K  N  D  A  T  F  P  Q  R  P  M  Y  V  Y  G  S  I  W  D  A  S  S  W  A  T  E  E  G  R  I  K  A  D  Y  R  Y  Q  P  F  I  G  K  Y  S  N  N  F  K  V  E  G  C  A  A  Y  E  S  P  S  C  R  R  A  P  S  S  S  P  S  G  G  G  G  L  S  R  Q  Q  I  E  A  M  L  W  V  H  R  N  Y  K  V  Y  D  Y  C  R  D  P  R  R  D  H  T  H  T  P  E  C  *  C  V  N  D  R  K  I  K  K  I  L  N  C  I  E  F  I  V  *  I  *  G  G  K  K  V  A  L  R  W  S  H  L  P  L  I  V  A  K  S  C  *  S  V  Q  G  V  P  F  F  F  L  I  E  I  Y  I  N  V  L  K  M  F  D  L  S  F  M  G  E  K  K  E  S  R  I  L  K  N  Y  R  R  Y  I  L  P  Y  F  L  M  N  C  F  *  L  *  F  L  F  D  Q  S  V  Y  L  F  L  Y  L  *  L  L  K  K  K  I  Y  I  Y  Y  I  S  Q  K  K  I </second_frame>
            <third_frame>   N  T  H  S  T  P  K  Y  H  *  N  N  F  L  D  F  I  S  K  Q  L  L  W  N  S  F  F  I  Y  F  Y  F  S  Y  S  I  Q  D  *  S  M  L  K  V  P  L  H  L  A  T  I  L  V  L  G  H  N  L  *  D  L  T  K  V  L  E  T  F  G  V  L  N  I  N  H  W  T  K  V  P  *  L  Y  G  L  I  K  I  Q  :  E  E  V  V  L  N  L  *  R  I  I  V  L  V  I  L  G  V  V  L  S  Y  N  L  V  L  L  L  E  L  L  L  L  F  I :   F  Q  I  I  K  I  I  R  G  T  M  M  K  L  I  L  N  F  L  E  Q  H  Q  T  S  H  I  L  Y  K  Q  M  C  I  *  E  E  V  E  M  E  I  L  L  E  E  K  *  N  F  I  F  G  L  I  Q  Q  K  I  I  T  I  M  Q  S  F  G  T  P  M  R  S   : Y  F  L  S  M  M  S  L  L  E  D  T  L  K  K  M  M  Q  H  F  H  K  D  L  C  M  S  M  V  Q  F  G  M  H  H  L  G  Q  R  R  K  D  E  L  K  R  I  I  D  T  N  L  L  S  E  N  I  V  I  I  S  R  L  K  V  A  R  P  T  R  V  P  L  V  V  E  R  L  L  A  L  L  R  G  V  E  G  *  V  D  N  R  *  R  L  C  C  G  C  I  G  T  I  R  C  T  I  I  V  G  I  L  G  G  T  I  L  T  H  L  S  V  S  V  *  T  I  V  K  *  K  R  Y  *  I  V  S  N  L  S  F  E  Y  K  G  G  K  K  *  P  *  D  G  P  I  C  H  *  L  L  Q  K  V  V  E  A  S  K  V  F  L  F  F  F  *  L  K  F  I  *  M  Y  *  K  C  L  I  *  V  S  W  E  K  K  K  S  Q  E  Y  *  R  I  I  E  D  I  S  C  P  I  F  S  *  I  A  F  N  C  N  F  Y  L  I  K  V  C  I  C  F  F  I  C  D  C  *  R  K  K  Y  I  Y  I  I  L  A  K  R  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16970" stop="16706"/>
                    <exon start="16266" stop="16163"/>
                    <exon start="16076" stop="15859"/>
                    <exon start="15169" stop="14803"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>951</number_coding_nucleotides>
                  <number_encoded_amino_acids>317</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSLNTKVPLKQLFGFYIQTIIMEFLLYLLLFFLLNSRLINAQGPPSPGYYPSSRAQSIGFNQGFRNLWGPQHQSLDQSTLTIWLDKNSGGSGFKSLKNYRSGYFGSSIKLQPGFTAGIITSFYLSNNQDYPGNHDEIDIEFLGTTPNKPYTLQTNVYIRGSGDGNIIGREMKFHLWFDPTKDYHNYAILWDPNEIIFFVDDVPIRRYPKKNDATFPQRPMYVYGSIWDASSWATEEGRIKADYRYQPFIGKYSNNFKVEGCAAYESPSCRRAPSSSPSGGGGLSRQQIEAMLWVHRNYKVYDYCRDPRRDHTHTPEC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="16974" e_stop="16706"/>
            <exon e_start="16266" e_stop="16163"/>
            <exon e_start="16076" e_stop="15859"/>
            <exon e_start="15169" e_stop="14544"/>
            <exon e_start="14463" e_stop="14458"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.992" e_score="0.996"/>
          <exon-intron don_prob="0.000" acc_prob="0.986" e_score="0.990"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.463" e_score="0.987"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="16974" e_stop="16706" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.992">
            <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="16266" e_stop="16163" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16076" e_stop="15859" e_length="218"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="15858" i_stop="15170" i_length="689"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="15169" e_stop="14544" e_length="626"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.463">
            <gDNA_intron_boundary i_start="14543" i_stop="14464" i_length="80"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="14463" e_stop="14458" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16974" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="14786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16974" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="14978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16974" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="15010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16974" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="15010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16974" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="15113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16974" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16974" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16974" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16973" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16969" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16969" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16968" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="15010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16968" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="15059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16968" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16967" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="15115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16967" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16967" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16966" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="14966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16966" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16965" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16961" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="15115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16957" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="15059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16957" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16951" stop="16710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16947" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="15053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16947" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="15094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16936" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16932" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16809" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="15065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16778" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="16056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16735" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="15133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="14761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16256" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="15084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16222" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="14925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16221" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="14792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15165" stop="14978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15164" stop="14609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15046" stop="14544"/>
              <exon start="14463" stop="14458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357912" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAACACTCACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG : GAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTAT : CTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCAT : ATTTTTTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTCTATGGTTCAATTTGGGATGCATCATCTTGGGCAACGGAGGAAGGACGAATTAAAGCGGATTATCGATACCAACCTTTTATCGGAAAATATAGTAATAATTTCAAGGTTGAAGGTTGCGCGGCCTACGAGAGTCCCTCTTGTCGTCGAGCGCCTTCTAGCTCTCCTTCGGGGGGTGGAGGGTTGAGTCGACAACAGATAGAGGCTATGTTGTGGGTGCATAGGAACTATAAGGTGTACGATTATTGTAGGGATCCTAGGAGGGACCATACTCACACACCTGAGTGTTAGTGTGTGAACGATCGTAAAATAAAAAAGATATTAAATTGTATCGAATTTATCGTTTGAATATAAGGGGGGAAAAAAGTAGCCTTGAGATGGTCCCATTTGCCATTAATTGTTGCAAAAAGTTGTTGAAGCGTCCAAGGTGTTCCTTTTTTTTTTTTGATTGAAATTTATATAAATGTATTAAAAATGTTTGATTTAAGTTTCATGGGAGAAAAAAAAGAGTCAAGAATATTGAAGAATTATAGAAGATATATCTTGCCCT : AAAAAA</gDNA_template>
            <first_frame> L  T  L  T  Q  H  Q  S  T  I  K  T  T  F  W  I  L  Y  P  N  N  Y  Y  G  I  P  S  L  F  T  F  I  F  L  T  Q  F  K  I  N  Q  C  S  R  S  P  F  T  W  L  L  S  *  F  *  G  T  I  Y  R  I  *  P  R  F  *  K  P  L  G  S  S  T  S  I  I  G  P  K  Y  L  N  Y  M  A  *  *  K  F  R :   R  K  W  F  *  I  S  K  E  L  S  F  W  L  F  W  E  *  Y  *  A  T  T  W  F  Y  C  W  N  Y  Y  F  F  L   : S  F  K  *  S  R  L  S  G  E  P  *  *  N  *  Y  *  I  S  W  N  N  T  K  Q  A  I  Y  F  T  N  K  C  V  Y  K  R  K  W  R  W  K  Y  Y  W  K  R  N  E  I  S  S  L  V  *  S  N  K  R  L  S  Q  L  C  N  P  L  G  P  Q  *  D  H  :  I  F  C  R  *  C  P  Y  *  K  I  P  *  K  K  *  C  N  I  S  T  K  T  Y  V  C  L  W  F  N  L  G  C  I  I  L  G  N  G  G  R  T  N  *  S  G  L  S  I  P  T  F  Y  R  K  I  *  *  *  F  Q  G  *  R  L  R  G  L  R  E  S  L  L  S  S  S  A  F  *  L  S  F  G  G  W  R  V  E  S  T  T  D  R  G  Y  V  V  G  A  *  E  L  *  G  V  R  L  L  *  G  S  *  E  G  P  Y  S  H  T  *  V  L  V  C  E  R  S  *  N  K  K  D  I  K  L  Y  R  I  Y  R  L  N  I  R  G  E  K  S  S  L  E  M  V  P  F  A  I  N  C  C  K  K  L  L  K  R  P  R  C  S  F  F  F  F  D  *  N  L  Y  K  C  I  K  N  V  *  F  K  F  H  G  R  K  K  R  V  K  N  I  E  E  L  *  K  I  Y  L  A  L :   K   </first_frame>
            <second_frame>  *  H  S  L  N  T  K  V  P  L  K  Q  L  F  G  F  Y  I  Q  T  I  I  M  E  F  L  L  Y  L  L  L  F  F  L  L  N  S  R  L  I  N  A  Q  G  P  P  S  P  G  Y  Y  P  S  S  R  A  Q  S  I  G  F  N  Q  G  F  R  N  L  W  G  P  Q  H  Q  S  L  D  Q  S  T  L  T  I  W  L  D  K  N  S   : G  G  S  G  F  K  S  L  K  N  Y  R  S  G  Y  F  G  S  S  I  K  L  Q  P  G  F  T  A  G  I  I  T  S  F  Y  :  L  S  N  N  Q  D  Y  P  G  N  H  D  E  I  D  I  E  F  L  G  T  T  P  N  K  P  Y  T  L  Q  T  N  V  Y  I  R  G  S  G  D  G  N  I  I  G  R  E  M  K  F  H  L  W  F  D  P  T  K  D  Y  H  N  Y  A  I  L  W  D  P  N  E  I  I :   F  F  V  D  D  V  P  I  R  R  Y  P  K  K  N  D  A  T  F  P  Q  R  P  M  Y  V  Y  G  S  I  W  D  A  S  S  W  A  T  E  E  G  R  I  K  A  D  Y  R  Y  Q  P  F  I  G  K  Y  S  N  N  F  K  V  E  G  C  A  A  Y  E  S  P  S  C  R  R  A  P  S  S  S  P  S  G  G  G  G  L  S  R  Q  Q  I  E  A  M  L  W  V  H  R  N  Y  K  V  Y  D  Y  C  R  D  P  R  R  D  H  T  H  T  P  E  C  *  C  V  N  D  R  K  I  K  K  I  L  N  C  I  E  F  I  V  *  I  *  G  G  K  K  V  A  L  R  W  S  H  L  P  L  I  V  A  K  S  C  *  S  V  Q  G  V  P  F  F  F  L  I  E  I  Y  I  N  V  L  K  M  F  D  L  S  F  M  G  E  K  K  E  S  R  I  L  K  N  Y  R  R  Y  I  L  P   : *  K  </second_frame>
            <third_frame>   N  T  H  S  T  P  K  Y  H  *  N  N  F  L  D  F  I  S  K  Q  L  L  W  N  S  F  F  I  Y  F  Y  F  S  Y  S  I  Q  D  *  S  M  L  K  V  P  L  H  L  A  T  I  L  V  L  G  H  N  L  *  D  L  T  K  V  L  E  T  F  G  V  L  N  I  N  H  W  T  K  V  P  *  L  Y  G  L  I  K  I  Q  :  E  E  V  V  L  N  L  *  R  I  I  V  L  V  I  L  G  V  V  L  S  Y  N  L  V  L  L  L  E  L  L  L  L  F  I :   F  Q  I  I  K  I  I  R  G  T  M  M  K  L  I  L  N  F  L  E  Q  H  Q  T  S  H  I  L  Y  K  Q  M  C  I  *  E  E  V  E  M  E  I  L  L  E  E  K  *  N  F  I  F  G  L  I  Q  Q  K  I  I  T  I  M  Q  S  F  G  T  P  M  R  S   : Y  F  L  S  M  M  S  L  L  E  D  T  L  K  K  M  M  Q  H  F  H  K  D  L  C  M  S  M  V  Q  F  G  M  H  H  L  G  Q  R  R  K  D  E  L  K  R  I  I  D  T  N  L  L  S  E  N  I  V  I  I  S  R  L  K  V  A  R  P  T  R  V  P  L  V  V  E  R  L  L  A  L  L  R  G  V  E  G  *  V  D  N  R  *  R  L  C  C  G  C  I  G  T  I  R  C  T  I  I  V  G  I  L  G  G  T  I  L  T  H  L  S  V  S  V  *  T  I  V  K  *  K  R  Y  *  I  V  S  N  L  S  F  E  Y  K  G  G  K  K  *  P  *  D  G  P  I  C  H  *  L  L  Q  K  V  V  E  A  S  K  V  F  L  F  F  F  *  L  K  F  I  *  M  Y  *  K  C  L  I  *  V  S  W  E  K  K  K  S  Q  E  Y  *  R  I  I  E  D  I  S  C  P  :  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16970" stop="16706"/>
                    <exon start="16266" stop="16163"/>
                    <exon start="16076" stop="15859"/>
                    <exon start="15169" stop="14803"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>951</number_coding_nucleotides>
                  <number_encoded_amino_acids>317</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSLNTKVPLKQLFGFYIQTIIMEFLLYLLLFFLLNSRLINAQGPPSPGYYPSSRAQSIGFNQGFRNLWGPQHQSLDQSTLTIWLDKNSGGSGFKSLKNYRSGYFGSSIKLQPGFTAGIITSFYLSNNQDYPGNHDEIDIEFLGTTPNKPYTLQTNVYIRGSGDGNIIGREMKFHLWFDPTKDYHNYAILWDPNEIIFFVDDVPIRRYPKKNDATFPQRPMYVYGSIWDASSWATEEGRIKADYRYQPFIGKYSNNFKVEGCAAYESPSCRRAPSSSPSGGGGLSRQQIEAMLWVHRNYKVYDYCRDPRRDHTHTPEC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="36191" PGL_stop="42496"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36191" e_stop="36427"/>
            <exon e_start="36726" e_stop="36802"/>
            <exon e_start="38385" e_stop="38487"/>
            <exon e_start="40247" e_stop="40368"/>
            <exon e_start="41868" e_stop="42059"/>
            <exon e_start="42156" e_stop="42496"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.770" acc_prob="1.000" e_score="0.996"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="36191" e_stop="36427" e_length="237"/>
          </exon>
          <intron i_serial="1" don_prob="0.770" acc_prob="1.000">
            <gDNA_intron_boundary i_start="36428" i_stop="36725" i_length="298"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36726" e_stop="36802" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="36803" i_stop="38384" i_length="1582"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38385" e_stop="38487" e_length="103"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.994">
            <gDNA_intron_boundary i_start="38488" i_stop="40246" i_length="1759"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40247" e_stop="40368" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.938" acc_prob="1.000">
            <gDNA_intron_boundary i_start="40369" i_stop="41867" i_length="1499"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41868" e_stop="42059" e_length="192"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42060" i_stop="42155" i_length="96"/>
          </intron>
          <exon e_serial="6" e_score="0.959">
            <gDNA_exon_boundary e_start="42156" e_stop="42496" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36191" stop="36427"/>
              <exon start="36726" stop="36802"/>
              <exon start="38385" stop="38487"/>
              <exon start="40247" stop="40368"/>
              <exon start="41868" stop="42059"/>
              <exon start="42156" stop="42299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36271" stop="36427"/>
              <exon start="36726" stop="36802"/>
              <exon start="38385" stop="38487"/>
              <exon start="40247" stop="40368"/>
              <exon start="41868" stop="42059"/>
              <exon start="42156" stop="42242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40343" stop="40368"/>
              <exon start="41868" stop="42059"/>
              <exon start="42156" stop="42496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251989" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATAATATTCTTTTTGGATCAGAAAATAATTGAAATTCGCGATAAAGAAAAATTGTTGTTTTGATCTTCCATTGAAGGGTTCATTGATTTCTGAGCTTTTTGGTTCAAAGGGTTTTTTCAGAAAATGGAGAAAGTAATGAATATATTGAAGCCGAAACCGAATCCTCAACAGATTTTGAGGGATTGGCAACGTCGGCTCCGGCAAGAGTGTCGGAATATTGAACGTCAAATTCGAG : ATATACAAAGGGAGGAGAAGAATGTACAGAAAGCAATTAAAGAAGCAGCAAAGAGAAATGATATGGGTTCTGCCAAG : GCACTTGCTAAAGAGATTGTGAGATCTAAAAAGACTGTGAACCGATTATACGAGAATAAGGCGCAGTTGAATTCAATATCCATGCACCTTGGAGAAAGTGTTG : CCATTGCTCGCACAGTGGGGCATTTGTCTAAGAGCGCTGAAGTCATGAAGCTCGTCAATAATCTTATGAAGGCTCCAGAAGTGGCTATGACAATGCAGGAGTTTAGTAAAGAAATGACCAAG : GCTGGTGTCATGGAAGAAATGGTCAATGATGCGGTGGACAGTGCCCTGGATTCAGAAGACATGGAAGAGGAAATTGAAGAAGAAGTTGACAAGGTCCTGACTGCAATTGCTGGTGAAACTACTGCACAATTACCTGAAGCAGTCCGAAAGGAGAAGTTAAAGCAACCCGCCCAGGCAGTGGAGGATGCAGAG : GATGACGAAGAAGATCTAGAAGAACTAAGGGCACGTCTTGCTAAAGTTAGATCCTAAGTGATTTTTAAAATTGACTCGCGCTGCCTCTAAGGCTTCGATGTAAAATATGTTGTGTGTGAAACAAAGACCTCTTCTATGGTCTGACGAGTTGCATCTTCTATCTGGAAGAGAGGATATTGAAGTACCTTCTATATCTTAGAATCAATACTCATGATTTCTTGTATTGATTATCAATGTGAGTTGTGATCTTTTTCTCTTTGAGCATGCTTTTCATTGTATGGTAACTGAAAATCTATGCTAACAACATTTCTTGCTATTTAGTAGAATTGGCTGTTCAATGT</gDNA_template>
            <first_frame> K  *  Y  S  F  W  I  R  K  *  L  K  F  A  I  K  K  N  C  C  F  D  L  P  L  K  G  S  L  I  S  E  L  F  G  S  K  G  F  F  R  K  W  R  K  *  *  I  Y  *  S  R  N  R  I  L  N  R  F  *  G  I  G  N  V  G  S  G  K  S  V  G  I  L  N  V  K  F  E  :  I  Y  K  G  R  R  R  M  Y  R  K  Q  L  K  K  Q  Q  R  E  M  I  W  V  L  P  R :   H  L  L  K  R  L  *  D  L  K  R  L  *  T  D  Y  T  R  I  R  R  S  *  I  Q  Y  P  C  T  L  E  K  V  L  :  P  L  L  A  Q  W  G  I  C  L  R  A  L  K  S  *  S  S  S  I  I  L  *  R  L  Q  K  W  L  *  Q  C  R  S  L  V  K  K  *  P  R :   L  V  S  W  K  K  W  S  M  M  R  W  T  V  P  W  I  Q  K  T  W  K  R  K  L  K  K  K  L  T  R  S  *  L  Q  L  L  V  K  L  L  H  N  Y  L  K  Q  S  E  R  R  S  *  S  N  P  P  R  Q  W  R  M  Q  R :   M  T  K  K  I  *  K  N  *  G  H  V  L  L  K  L  D  P  K  *  F  L  K  L  T  R  A  A  S  K  A  S  M  *  N  M  L  C  V  K  Q  R  P  L  L  W  S  D  E  L  H  L  L  S  G  R  E  D  I  E  V  P  S  I  S  *  N  Q  Y  S  *  F  L  V  L  I  I  N  V  S  C  D  L  F  L  F  E  H  A  F  H  C  M  V  T  E  N  L  C  *  Q  H  F  L  L  F  S  R  I  G  C  S  M  </first_frame>
            <second_frame>  N  N  I  L  F  G  S  E  N  N  *  N  S  R  *  R  K  I  V  V  L  I  F  H  *  R  V  H  *  F  L  S  F  L  V  Q  R  V  F  S  E  N  G  E  S  N  E  Y  I  E  A  E  T  E  S  S  T  D  F  E  G  L  A  T  S  A  P  A  R  V  S  E  Y  *  T  S  N  S  R :   Y  T  K  G  G  E  E  C  T  E  S  N  *  R  S  S  K  E  K  *  Y  G  F  C  Q   : G  T  C  *  R  D  C  E  I  *  K  D  C  E  P  I  I  R  E  *  G  A  V  E  F  N  I  H  A  P  W  R  K  C  C :   H  C  S  H  S  G  A  F  V  *  E  R  *  S  H  E  A  R  Q  *  S  Y  E  G  S  R  S  G  Y  D  N  A  G  V  *  *  R  N  D  Q   : G  W  C  H  G  R  N  G  Q  *  C  G  G  Q  C  P  G  F  R  R  H  G  R  G  N  *  R  R  S  *  Q  G  P  D  C  N  C  W  *  N  Y  C  T  I  T  *  S  S  P  K  G  E  V  K  A  T  R  P  G  S  G  G  C  R   : G  *  R  R  R  S  R  R  T  K  G  T  S  C  *  S  *  I  L  S  D  F  *  N  *  L  A  L  P  L  R  L  R  C  K  I  C  C  V  *  N  K  D  L  F  Y  G  L  T  S  C  I  F  Y  L  E  E  R  I  L  K  Y  L  L  Y  L  R  I  N  T  H  D  F  L  Y  *  L  S  M  *  V  V  I  F  F  S  L  S  M  L  F  I  V  W  *  L  K  I  Y  A  N  N  I  S  C  Y  L  V  E  L  A  V  Q  C </second_frame>
            <third_frame>   I  I  F  F  L  D  Q  K  I  I  E  I  R  D  K  E  K  L  L  F  *  S  S  I  E  G  F  I  D  F  *  A  F  W  F  K  G  F  F  Q  K  M  E  K  V  M  N  I  L  K  P  K  P  N  P  Q  Q  I  L  R  D  W  Q  R  R  L  R  Q  E  C  R  N  I  E  R  Q  I  R   : D  I  Q  R  E  E  K  N  V  Q  K  A  I  K  E  A  A  K  R  N  D  M  G  S  A  K  :  A  L  A  K  E  I  V  R  S  K  K  T  V  N  R  L  Y  E  N  K  A  Q  L  N  S  I  S  M  H  L  G  E  S  V   : A  I  A  R  T  V  G  H  L  S  K  S  A  E  V  M  K  L  V  N  N  L  M  K  A  P  E  V  A  M  T  M  Q  E  F  S  K  E  M  T  K  :  A  G  V  M  E  E  M  V  N  D  A  V  D  S  A  L  D  S  E  D  M  E  E  E  I  E  E  E  V  D  K  V  L  T  A  I  A  G  E  T  T  A  Q  L  P  E  A  V  R  K  E  K  L  K  Q  P  A  Q  A  V  E  D  A  E  :  D  D  E  E  D  L  E  E  L  R  A  R  L  A  K  V  R  S  *  V  I  F  K  I  D  S  R  C  L  *  G  F  D  V  K  Y  V  V  C  E  T  K  T  S  S  M  V  *  R  V  A  S  S  I  W  K  R  G  Y  *  S  T  F  Y  I  L  E  S  I  L  M  I  S  C  I  D  Y  Q  C  E  L  *  S  F  S  L  *  A  C  F  S  L  Y  G  N  *  K  S  M  L  T  T  F  L  A  I  *  *  N  W  L  F  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36286" stop="36427"/>
                    <exon start="36726" stop="36802"/>
                    <exon start="38385" stop="38487"/>
                    <exon start="40247" stop="40368"/>
                    <exon start="41868" stop="42059"/>
                    <exon start="42156" stop="42212"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFWFKGFFQKMEKVMNILKPKPNPQQILRDWQRRLRQECRNIERQIRDIQREEKNVQKAIKEAAKRNDMGSAKALAKEIVRSKKTVNRLYENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLMKAPEVAMTMQEFSKEMTKAGVMEEMVNDAVDSALDSEDMEEEIEEEVDKVLTAIAGETTAQLPEAVRKEKLKQPAQAVEDAEDDEEDLEELRARLAKVRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="46849" PGL_stop="47253"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46849" e_stop="47253"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="46849" e_stop="47253" e_length="405"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46849" stop="47253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAACGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAATCCTAATCTCTTTGTTAATAATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGGGATTGATTATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGAATTAGTGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACG</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  T  *  L  Y  N  C  D  Y  I  S  M  M  K  L  L  N  P  K  S  C  K  I  L  I  S  L  L  I  M  R  P  W  Y  K  R  R  R  D  E  L  K  *  W  D  *  L  C  L  G  K  K  E  G  L  M  N  *  *  K  E  N  *  W  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  V  L  G  D  R  V  S  R  T  D  T </first_frame>
            <second_frame>  N  L  R  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  D  N  I  V  N  P  A  M  C  L  I  V  C  L  H  E  R  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  A  K  S  *  S  L  C  *  *  *  G  L  G  I  K  E  G  V  M  N  *  N  N  G  I  D  Y  A  L  V  R  K  K  A  *  *  I  D  R  R  R  I  S  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  *  Y  *  G  I  G  C  H  E  P  T   </second_frame>
            <third_frame>   I  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  E  V  I  E  S  Q  I  L  Q  N  P  N  L  F  V  N  N  E  A  L  V  *  K  K  A  *  *  T  K  I  M  G  L  I  M  P  W  *  E  R  R  L  D  E  L  I  E  G  E  L  V  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  S  I  R  G  S  G  V  T  N  R  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0249E07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="47706" PGL_stop="47369"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47706" e_stop="47369"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="47706" e_stop="47369" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47706" stop="47369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTTAACATGTAGCAACAACAAGTACTATATCATTAACAATTATCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  *  H  V  A  T  T  S  T  I  S  L  T  I  I  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  S  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  Q  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  P  K  S  T  C  R  F  V  T  P  D   </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  V  L  Y  H  *  Q  L  S  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  H  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  N  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  R  V  G  S  *  H  P  I  </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  L  T  C  S  N  N  K  Y  Y  I  I  N  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  I  F  I  N  P  L  V  S  V  R  D  T  P  I  P  *  I  Y  V  S  V  R  D  T  R  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0249E07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="47379" PGL_stop="47859"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47379" e_stop="47859"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="47379" e_stop="47859" e_length="481"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47379" stop="47617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47380" stop="47859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGATAATTGTTAATGATATAGTACTTGTTGTTGCTACATGTTAAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCACTACATCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> S  R  T  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  I  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  M  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  K  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  I  V  E  C  S  K  R  A  V  I  F  D  S  T  V  T  L  A  S  L  H  Y  I  G  S  S  G  *  A  N  A  S  S  L  D  </first_frame>
            <second_frame>  H  E  P  T  R  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  L  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  D  N  C  *  *  Y  S  T  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  *  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  L  *  P  V  F  T  T  S  D  L  Q  G  E  L  M  L  L  A  W  T </second_frame>
            <third_frame>   T  N  R  H  V  D  L  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  D  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  I  I  V  N  D  I  V  L  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  F  N  C  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  L  H  R  I  F  R  V  S  *  C  F  *  L  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47643" stop="47837"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYDITWYILISILSWPMISTQYPCFVLTPTFMFSSCLIVECSKRAVIFDSTVTLASLHYIGSSG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="51815" PGL_stop="55957"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51815" e_stop="52162"/>
            <exon e_start="52873" e_stop="53041"/>
            <exon e_start="54029" e_stop="54148"/>
            <exon e_start="54250" e_stop="54393"/>
            <exon e_start="54485" e_stop="54635"/>
            <exon e_start="54749" e_stop="54837"/>
            <exon e_start="54955" e_stop="55216"/>
            <exon e_start="55554" e_stop="55957"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.750" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.619" acc_prob="0.951" e_score="0.987"/>
          <exon-intron don_prob="0.973" acc_prob="0.989" e_score="0.910"/>
          <exon-intron don_prob="0.915" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51815" e_stop="52162" e_length="348"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.985">
            <gDNA_intron_boundary i_start="52163" i_stop="52872" i_length="710"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52873" e_stop="53041" e_length="169"/>
          </exon>
          <intron i_serial="2" don_prob="0.937" acc_prob="0.750">
            <gDNA_intron_boundary i_start="53042" i_stop="54028" i_length="987"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54029" e_stop="54148" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.939">
            <gDNA_intron_boundary i_start="54149" i_stop="54249" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54250" e_stop="54393" e_length="144"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54394" i_stop="54484" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="54485" e_stop="54635" e_length="151"/>
          </exon>
          <intron i_serial="5" don_prob="0.619" acc_prob="0.951">
            <gDNA_intron_boundary i_start="54636" i_stop="54748" i_length="113"/>
          </intron>
          <exon e_serial="6" e_score="0.910">
            <gDNA_exon_boundary e_start="54749" e_stop="54837" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.973" acc_prob="0.989">
            <gDNA_intron_boundary i_start="54838" i_stop="54954" i_length="117"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="54955" e_stop="55216" e_length="262"/>
          </exon>
          <intron i_serial="7" don_prob="0.915" acc_prob="0.997">
            <gDNA_intron_boundary i_start="55217" i_stop="55553" i_length="337"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="55554" e_stop="55957" e_length="404"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51815" stop="52162"/>
              <exon start="52873" stop="53041"/>
              <exon start="54029" stop="54148"/>
              <exon start="54250" stop="54393"/>
              <exon start="54485" stop="54493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51817" stop="52162"/>
              <exon start="52873" stop="53041"/>
              <exon start="54029" stop="54148"/>
              <exon start="54250" stop="54393"/>
              <exon start="54485" stop="54509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51833" stop="52162"/>
              <exon start="52873" stop="53041"/>
              <exon start="54029" stop="54148"/>
              <exon start="54250" stop="54372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51936" stop="52162"/>
              <exon start="52873" stop="53041"/>
              <exon start="54029" stop="54148"/>
              <exon start="54250" stop="54393"/>
              <exon start="54485" stop="54635"/>
              <exon start="54749" stop="54774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54034" stop="54148"/>
              <exon start="54250" stop="54393"/>
              <exon start="54485" stop="54635"/>
              <exon start="54749" stop="54837"/>
              <exon start="54955" stop="55121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54034" stop="54148"/>
              <exon start="54250" stop="54393"/>
              <exon start="54485" stop="54635"/>
              <exon start="54749" stop="54837"/>
              <exon start="54955" stop="55032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55008" stop="55216"/>
              <exon start="55554" stop="55948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55008" stop="55216"/>
              <exon start="55554" stop="55933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555343" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55099" stop="55216"/>
              <exon start="55554" stop="55921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55105" stop="55216"/>
              <exon start="55554" stop="55957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553525" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATGTCTTCTTCATCTTCATTATTCCCTCTTCTCTTTGTTGCTATATTTCTTGTTTTATGTTCCCAAATTGCCCTTTCATTATCACCCAATTTTTTCTTACAATCTCATAATGATATTATTAGTCCAAAGAAACTTCAATTAACAATGGGTGAAAAATTGATTAGGCAACTTAATTTGTTCCCTAAACATGACATTAATATTGTTTCTTCAAAGGACAATAATTATGAAAATAAATTATTTGAGAAGAAATTGGATTTATCTTATCTTGGTGATTCTGGTGCCACTGTCCAAGACTTAGGTCATCATGCTGGTTATTTTCCTCTTATAAACACTAAATCTGCAAG : GATGTTCTATTTTTTCTTTGAATCAAGGAGTAACAAGAATGATCCAGTAGTGATATGGTTAACAGGAGGTCCAGGATGTAGCAGTGAATTGGCATTATTTTATGAAAATGGACCTTTTAAAATATCAAAAAATATGTCTCTTGTCTGGAATGATTTTGGTTGGGACAAG : GTGTCAAACCTTATATACGTTGATCAACCAACTGGAACTGGTTTCAGTTATACTTCTGATGAAAGTGACATTCGACACAATGAGACTGGTGTAAGCAATGACCTTTATGATTTCCTACAG : GCCTTCTTCAATGCTCATCCTGAGTATGTAAATAATGATTTCTACATTACTGGAGAATCATATGCTGGACATTATATTCCTGCATTTGCTTCTAGAGTTCATCAAGGAAACATAAAGAAAGAAGGAATTCACATAAACCTCAAG : GGATTTGCTATAGGTAATGGCCTCACCAACCCAGAAATCCAGTATAAAGCTTACACCGACTATTCTTTGGATATGAAATTGATCAATCAAACCGACTACGATTATATAAATCAATTATATCCAACATGTCAACAAGAAATTAAACTTTGTG : CAAGTGGTAGTGAAGATGCATGTATGAAGGGATTTAACGATTGCAACCTCATTTTCAACAGTATAATGGACATTGCTGGCGACATAAAT : TACTATGATATCCGGAAGACCTGCAATGGTAGCCTCTGCTATGACTTCTCGAGAATGGAAACTTACCTCAACGATGACCAAGTTAAGGAAGCCCTCGGTGTTCCCACCAGTATTGACTTTGTCTCGTGTAGTTCTTCCGTTTATCAGGCGATGAGGATGGACTGGATGAAGAATCTTGAAGTCGGTATTCCTCAACTTCTTGAGGATGGTATCAATCTACTCATTTATGCTGGAGAATATGACCTTATCTGCAACTGGCTTG : GGAACTCAAATTGGGTGCATGCAGTAGAATGGTCTGGGCAGAAAGGCTTTGAGGCTGCACCATCTGTTTCTTTCACAGTAGATGGTGAGGAGAAAGGTGTTCAAAAGAAGTATGGACCACTGATATTCCTCAAGGTCCACGATGCAGGTCATATGGTGCCGATGGACCAACCTAAGGCAGCACTTGAAATGCTTCAGCGGTGGACTCATGGCAACTTGTGAAGAATCAATTTATGAACCACACATACTGAAACAGATTAACAATTTACCAGCTTTATGATATCACCAAACATAGAAAATCATGTAGATACATTTCACCCTTTCAGGTGAATGTTGTTCTTCTAAGATAATTGGGTTAAGCATTATAACATATAGTGAACCACACTGTTTGCCCTTATAATTTGT</gDNA_template>
            <first_frame> K  N  V  F  F  I  F  I  I  P  S  S  L  C  C  Y  I  S  C  F  M  F  P  N  C  P  F  I  I  T  Q  F  F  L  T  I  S  *  *  Y  Y  *  S  K  E  T  S  I  N  N  G  *  K  I  D  *  A  T  *  F  V  P  *  T  *  H  *  Y  C  F  F  K  G  Q  *  L  *  K  *  I  I  *  E  E  I  G  F  I  L  S  W  *  F  W  C  H  C  P  R  L  R  S  S  C  W  L  F  S  S  Y  K  H  *  I  C  K  :  D  V  L  F  F  L  *  I  K  E  *  Q  E  *  S  S  S  D  M  V  N  R  R  S  R  M  *  Q  *  I  G  I  I  L  *  K  W  T  F  *  N  I  K  K  Y  V  S  C  L  E  *  F  W  L  G  Q   : G  V  K  P  Y  I  R  *  S  T  N  W  N  W  F  Q  L  Y  F  *  *  K  *  H  S  T  Q  *  D  W  C  K  Q  *  P  L  *  F  P  T   : G  L  L  Q  C  S  S  *  V  C  K  *  *  F  L  H  Y  W  R  I  I  C  W  T  L  Y  S  C  I  C  F  *  S  S  S  R  K  H  K  E  R  R  N  S  H  K  P  Q   : G  I  C  Y  R  *  W  P  H  Q  P  R  N  P  V  *  S  L  H  R  L  F  F  G  Y  E  I  D  Q  S  N  R  L  R  L  Y  K  S  I  I  S  N  M  S  T  R  N  *  T  L  C :   K  W  *  *  R  C  M  Y  E  G  I  *  R  L  Q  P  H  F  Q  Q  Y  N  G  H  C  W  R  H  K   : L  L  *  Y  P  E  D  L  Q  W  *  P  L  L  *  L  L  E  N  G  N  L  P  Q  R  *  P  S  *  G  S  P  R  C  S  H  Q  Y  *  L  C  L  V  *  F  F  R  L  S  G  D  E  D  G  L  D  E  E  S  *  S  R  Y  S  S  T  S  *  G  W  Y  Q  S  T  H  L  C  W  R  I  *  P  Y  L  Q  L  A  W :   E  L  K  L  G  A  C  S  R  M  V  W  A  E  R  L  *  G  C  T  I  C  F  F  H  S  R  W  *  G  E  R  C  S  K  E  V  W  T  T  D  I  P  Q  G  P  R  C  R  S  Y  G  A  D  G  P  T  *  G  S  T  *  N  A  S  A  V  D  S  W  Q  L  V  K  N  Q  F  M  N  H  T  Y  *  N  R  L  T  I  Y  Q  L  Y  D  I  T  K  H  R  K  S  C  R  Y  I  S  P  F  Q  V  N  V  V  L  L  R  *  L  G  *  A  L  *  H  I  V  N  H  T  V  C  P  Y  N  L  </first_frame>
            <second_frame>  K  M  S  S  S  S  S  L  F  P  L  L  F  V  A  I  F  L  V  L  C  S  Q  I  A  L  S  L  S  P  N  F  F  L  Q  S  H  N  D  I  I  S  P  K  K  L  Q  L  T  M  G  E  K  L  I  R  Q  L  N  L  F  P  K  H  D  I  N  I  V  S  S  K  D  N  N  Y  E  N  K  L  F  E  K  K  L  D  L  S  Y  L  G  D  S  G  A  T  V  Q  D  L  G  H  H  A  G  Y  F  P  L  I  N  T  K  S  A  R :   M  F  Y  F  F  F  E  S  R  S  N  K  N  D  P  V  V  I  W  L  T  G  G  P  G  C  S  S  E  L  A  L  F  Y  E  N  G  P  F  K  I  S  K  N  M  S  L  V  W  N  D  F  G  W  D  K  :  V  S  N  L  I  Y  V  D  Q  P  T  G  T  G  F  S  Y  T  S  D  E  S  D  I  R  H  N  E  T  G  V  S  N  D  L  Y  D  F  L  Q  :  A  F  F  N  A  H  P  E  Y  V  N  N  D  F  Y  I  T  G  E  S  Y  A  G  H  Y  I  P  A  F  A  S  R  V  H  Q  G  N  I  K  K  E  G  I  H  I  N  L  K  :  G  F  A  I  G  N  G  L  T  N  P  E  I  Q  Y  K  A  Y  T  D  Y  S  L  D  M  K  L  I  N  Q  T  D  Y  D  Y  I  N  Q  L  Y  P  T  C  Q  Q  E  I  K  L  C   : A  S  G  S  E  D  A  C  M  K  G  F  N  D  C  N  L  I  F  N  S  I  M  D  I  A  G  D  I  N  :  Y  Y  D  I  R  K  T  C  N  G  S  L  C  Y  D  F  S  R  M  E  T  Y  L  N  D  D  Q  V  K  E  A  L  G  V  P  T  S  I  D  F  V  S  C  S  S  S  V  Y  Q  A  M  R  M  D  W  M  K  N  L  E  V  G  I  P  Q  L  L  E  D  G  I  N  L  L  I  Y  A  G  E  Y  D  L  I  C  N  W  L   : G  N  S  N  W  V  H  A  V  E  W  S  G  Q  K  G  F  E  A  A  P  S  V  S  F  T  V  D  G  E  E  K  G  V  Q  K  K  Y  G  P  L  I  F  L  K  V  H  D  A  G  H  M  V  P  M  D  Q  P  K  A  A  L  E  M  L  Q  R  W  T  H  G  N  L  *  R  I  N  L  *  T  T  H  T  E  T  D  *  Q  F  T  S  F  M  I  S  P  N  I  E  N  H  V  D  T  F  H  P  F  R  *  M  L  F  F  *  D  N  W  V  K  H  Y  N  I  *  *  T  T  L  F  A  L  I  I  C </second_frame>
            <third_frame>   K  C  L  L  H  L  H  Y  S  L  F  S  L  L  L  Y  F  L  F  Y  V  P  K  L  P  F  H  Y  H  P  I  F  S  Y  N  L  I  M  I  L  L  V  Q  R  N  F  N  *  Q  W  V  K  N  *  L  G  N  L  I  C  S  L  N  M  T  L  I  L  F  L  Q  R  T  I  I  M  K  I  N  Y  L  R  R  N  W  I  Y  L  I  L  V  I  L  V  P  L  S  K  T  *  V  I  M  L  V  I  F  L  L  *  T  L  N  L  Q   : G  C  S  I  F  S  L  N  Q  G  V  T  R  M  I  Q  *  *  Y  G  *  Q  E  V  Q  D  V  A  V  N  W  H  Y  F  M  K  M  D  L  L  K  Y  Q  K  I  C  L  L  S  G  M  I  L  V  G  T  R :   C  Q  T  L  Y  T  L  I  N  Q  L  E  L  V  S  V  I  L  L  M  K  V  T  F  D  T  M  R  L  V  *  A  M  T  F  M  I  S  Y  R :   P  S  S  M  L  I  L  S  M  *  I  M  I  S  T  L  L  E  N  H  M  L  D  I  I  F  L  H  L  L  L  E  F  I  K  E  T  *  R  K  K  E  F  T  *  T  S  R :   D  L  L  *  V  M  A  S  P  T  Q  K  S  S  I  K  L  T  P  T  I  L  W  I  *  N  *  S  I  K  P  T  T  I  I  *  I  N  Y  I  Q  H  V  N  K  K  L  N  F  V  :  Q  V  V  V  K  M  H  V  *  R  D  L  T  I  A  T  S  F  S  T  V  *  W  T  L  L  A  T  *  I :   T  M  I  S  G  R  P  A  M  V  A  S  A  M  T  S  R  E  W  K  L  T  S  T  M  T  K  L  R  K  P  S  V  F  P  P  V  L  T  L  S  R  V  V  L  P  F  I  R  R  *  G  W  T  G  *  R  I  L  K  S  V  F  L  N  F  L  R  M  V  S  I  Y  S  F  M  L  E  N  M  T  L  S  A  T  G  L  :  G  T  Q  I  G  C  M  Q  *  N  G  L  G  R  K  A  L  R  L  H  H  L  F  L  S  Q  *  M  V  R  R  K  V  F  K  R  S  M  D  H  *  Y  S  S  R  S  T  M  Q  V  I  W  C  R  W  T  N  L  R  Q  H  L  K  C  F  S  G  G  L  M  A  T  C  E  E  S  I  Y  E  P  H  I  L  K  Q  I  N  N  L  P  A  L  *  Y  H  Q  T  *  K  I  M  *  I  H  F  T  L  S  G  E  C  C  S  S  K  I  I  G  L  S  I  I  T  Y  S  E  P  H  C  L  P  L  *  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51816" stop="52162"/>
                    <exon start="52873" stop="53041"/>
                    <exon start="54029" stop="54148"/>
                    <exon start="54250" stop="54393"/>
                    <exon start="54485" stop="54635"/>
                    <exon start="54749" stop="54837"/>
                    <exon start="54955" stop="55216"/>
                    <exon start="55554" stop="55774"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1500</number_coding_nucleotides>
                  <number_encoded_amino_acids>500</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMSSSSSLFPLLFVAIFLVLCSQIALSLSPNFFLQSHNDIISPKKLQLTMGEKLIRQLNLFPKHDINIVSSKDNNYENKLFEKKLDLSYLGDSGATVQDLGHHAGYFPLINTKSARMFYFFFESRSNKNDPVVIWLTGGPGCSSELALFYENGPFKISKNMSLVWNDFGWDKVSNLIYVDQPTGTGFSYTSDESDIRHNETGVSNDLYDFLQAFFNAHPEYVNNDFYITGESYAGHYIPAFASRVHQGNIKKEGIHINLKGFAIGNGLTNPEIQYKAYTDYSLDMKLINQTDYDYINQLYPTCQQEIKLCASGSEDACMKGFNDCNLIFNSIMDIAGDINYYDIRKTCNGSLCYDFSRMETYLNDDQVKEALGVPTSIDFVSCSSSVYQAMRMDWMKNLEVGIPQLLEDGINLLIYAGEYDLICNWLGNSNWVHAVEWSGQKGFEAAPSVSFTVDGEEKGVQKKYGPLIFLKVHDAGHMVPMDQPKAALEMLQRWTHGNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="51815" e_stop="52162"/>
            <exon e_start="52873" e_stop="53041"/>
            <exon e_start="54029" e_stop="54148"/>
            <exon e_start="54250" e_stop="54393"/>
            <exon e_start="54485" e_stop="54635"/>
            <exon e_start="54749" e_stop="54837"/>
            <exon e_start="54955" e_stop="55278"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.750" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.619" acc_prob="0.951" e_score="0.987"/>
          <exon-intron don_prob="0.973" acc_prob="0.989" e_score="0.910"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51815" e_stop="52162" e_length="348"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.985">
            <gDNA_intron_boundary i_start="52163" i_stop="52872" i_length="710"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52873" e_stop="53041" e_length="169"/>
          </exon>
          <intron i_serial="2" don_prob="0.937" acc_prob="0.750">
            <gDNA_intron_boundary i_start="53042" i_stop="54028" i_length="987"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54029" e_stop="54148" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.939">
            <gDNA_intron_boundary i_start="54149" i_stop="54249" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54250" e_stop="54393" e_length="144"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54394" i_stop="54484" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="54485" e_stop="54635" e_length="151"/>
          </exon>
          <intron i_serial="5" don_prob="0.619" acc_prob="0.951">
            <gDNA_intron_boundary i_start="54636" i_stop="54748" i_length="113"/>
          </intron>
          <exon e_serial="6" e_score="0.910">
            <gDNA_exon_boundary e_start="54749" e_stop="54837" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.973" acc_prob="0.989">
            <gDNA_intron_boundary i_start="54838" i_stop="54954" i_length="117"/>
          </intron>
          <exon e_serial="7" e_score="0.939">
            <gDNA_exon_boundary e_start="54955" e_stop="55278" e_length="324"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51815" stop="52162"/>
              <exon start="52873" stop="53041"/>
              <exon start="54029" stop="54148"/>
              <exon start="54250" stop="54393"/>
              <exon start="54485" stop="54493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51817" stop="52162"/>
              <exon start="52873" stop="53041"/>
              <exon start="54029" stop="54148"/>
              <exon start="54250" stop="54393"/>
              <exon start="54485" stop="54509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51833" stop="52162"/>
              <exon start="52873" stop="53041"/>
              <exon start="54029" stop="54148"/>
              <exon start="54250" stop="54372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51936" stop="52162"/>
              <exon start="52873" stop="53041"/>
              <exon start="54029" stop="54148"/>
              <exon start="54250" stop="54393"/>
              <exon start="54485" stop="54635"/>
              <exon start="54749" stop="54774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54034" stop="54148"/>
              <exon start="54250" stop="54393"/>
              <exon start="54485" stop="54635"/>
              <exon start="54749" stop="54837"/>
              <exon start="54955" stop="55121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54034" stop="54148"/>
              <exon start="54250" stop="54393"/>
              <exon start="54485" stop="54635"/>
              <exon start="54749" stop="54837"/>
              <exon start="54955" stop="55032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54968" stop="55278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458122" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATGTCTTCTTCATCTTCATTATTCCCTCTTCTCTTTGTTGCTATATTTCTTGTTTTATGTTCCCAAATTGCCCTTTCATTATCACCCAATTTTTTCTTACAATCTCATAATGATATTATTAGTCCAAAGAAACTTCAATTAACAATGGGTGAAAAATTGATTAGGCAACTTAATTTGTTCCCTAAACATGACATTAATATTGTTTCTTCAAAGGACAATAATTATGAAAATAAATTATTTGAGAAGAAATTGGATTTATCTTATCTTGGTGATTCTGGTGCCACTGTCCAAGACTTAGGTCATCATGCTGGTTATTTTCCTCTTATAAACACTAAATCTGCAAG : GATGTTCTATTTTTTCTTTGAATCAAGGAGTAACAAGAATGATCCAGTAGTGATATGGTTAACAGGAGGTCCAGGATGTAGCAGTGAATTGGCATTATTTTATGAAAATGGACCTTTTAAAATATCAAAAAATATGTCTCTTGTCTGGAATGATTTTGGTTGGGACAAG : GTGTCAAACCTTATATACGTTGATCAACCAACTGGAACTGGTTTCAGTTATACTTCTGATGAAAGTGACATTCGACACAATGAGACTGGTGTAAGCAATGACCTTTATGATTTCCTACAG : GCCTTCTTCAATGCTCATCCTGAGTATGTAAATAATGATTTCTACATTACTGGAGAATCATATGCTGGACATTATATTCCTGCATTTGCTTCTAGAGTTCATCAAGGAAACATAAAGAAAGAAGGAATTCACATAAACCTCAAG : GGATTTGCTATAGGTAATGGCCTCACCAACCCAGAAATCCAGTATAAAGCTTACACCGACTATTCTTTGGATATGAAATTGATCAATCAAACCGACTACGATTATATAAATCAATTATATCCAACATGTCAACAAGAAATTAAACTTTGTG : CAAGTGGTAGTGAAGATGCATGTATGAAGGGATTTAACGATTGCAACCTCATTTTCAACAGTATAATGGACATTGCTGGCGACATAAAT : TACTATGATATCCGGAAGACCTGCAATGGTAGCCTCTGCTATGACTTCTCGAGAATGGAAACTTACCTCAACGATGACCAAGTTAAGGAAGCCCTCGGTGTTCCCACCAGTATTGACTTTGTCTCGTGTAGTTCTTCCGTTTATCAGGCGATGAGGATGGACTGGATGAAGAATCTTGAAGTCGGTATTCCTCAACTTCTTGAGGATGGTATCAATCTACTCATTTATGCTGGAGAATATGACCTTATCTGCAACTGGCTTGGTAAGCTTCATTCACCTATAACAGAAAAGCGCAAAAAAATTCTAAAAGGTCCGTTAGGGGTT</gDNA_template>
            <first_frame> K  N  V  F  F  I  F  I  I  P  S  S  L  C  C  Y  I  S  C  F  M  F  P  N  C  P  F  I  I  T  Q  F  F  L  T  I  S  *  *  Y  Y  *  S  K  E  T  S  I  N  N  G  *  K  I  D  *  A  T  *  F  V  P  *  T  *  H  *  Y  C  F  F  K  G  Q  *  L  *  K  *  I  I  *  E  E  I  G  F  I  L  S  W  *  F  W  C  H  C  P  R  L  R  S  S  C  W  L  F  S  S  Y  K  H  *  I  C  K  :  D  V  L  F  F  L  *  I  K  E  *  Q  E  *  S  S  S  D  M  V  N  R  R  S  R  M  *  Q  *  I  G  I  I  L  *  K  W  T  F  *  N  I  K  K  Y  V  S  C  L  E  *  F  W  L  G  Q   : G  V  K  P  Y  I  R  *  S  T  N  W  N  W  F  Q  L  Y  F  *  *  K  *  H  S  T  Q  *  D  W  C  K  Q  *  P  L  *  F  P  T   : G  L  L  Q  C  S  S  *  V  C  K  *  *  F  L  H  Y  W  R  I  I  C  W  T  L  Y  S  C  I  C  F  *  S  S  S  R  K  H  K  E  R  R  N  S  H  K  P  Q   : G  I  C  Y  R  *  W  P  H  Q  P  R  N  P  V  *  S  L  H  R  L  F  F  G  Y  E  I  D  Q  S  N  R  L  R  L  Y  K  S  I  I  S  N  M  S  T  R  N  *  T  L  C :   K  W  *  *  R  C  M  Y  E  G  I  *  R  L  Q  P  H  F  Q  Q  Y  N  G  H  C  W  R  H  K   : L  L  *  Y  P  E  D  L  Q  W  *  P  L  L  *  L  L  E  N  G  N  L  P  Q  R  *  P  S  *  G  S  P  R  C  S  H  Q  Y  *  L  C  L  V  *  F  F  R  L  S  G  D  E  D  G  L  D  E  E  S  *  S  R  Y  S  S  T  S  *  G  W  Y  Q  S  T  H  L  C  W  R  I  *  P  Y  L  Q  L  A  W  *  A  S  F  T  Y  N  R  K  A  Q  K  N  S  K  R  S  V  R  G  </first_frame>
            <second_frame>  K  M  S  S  S  S  S  L  F  P  L  L  F  V  A  I  F  L  V  L  C  S  Q  I  A  L  S  L  S  P  N  F  F  L  Q  S  H  N  D  I  I  S  P  K  K  L  Q  L  T  M  G  E  K  L  I  R  Q  L  N  L  F  P  K  H  D  I  N  I  V  S  S  K  D  N  N  Y  E  N  K  L  F  E  K  K  L  D  L  S  Y  L  G  D  S  G  A  T  V  Q  D  L  G  H  H  A  G  Y  F  P  L  I  N  T  K  S  A  R :   M  F  Y  F  F  F  E  S  R  S  N  K  N  D  P  V  V  I  W  L  T  G  G  P  G  C  S  S  E  L  A  L  F  Y  E  N  G  P  F  K  I  S  K  N  M  S  L  V  W  N  D  F  G  W  D  K  :  V  S  N  L  I  Y  V  D  Q  P  T  G  T  G  F  S  Y  T  S  D  E  S  D  I  R  H  N  E  T  G  V  S  N  D  L  Y  D  F  L  Q  :  A  F  F  N  A  H  P  E  Y  V  N  N  D  F  Y  I  T  G  E  S  Y  A  G  H  Y  I  P  A  F  A  S  R  V  H  Q  G  N  I  K  K  E  G  I  H  I  N  L  K  :  G  F  A  I  G  N  G  L  T  N  P  E  I  Q  Y  K  A  Y  T  D  Y  S  L  D  M  K  L  I  N  Q  T  D  Y  D  Y  I  N  Q  L  Y  P  T  C  Q  Q  E  I  K  L  C   : A  S  G  S  E  D  A  C  M  K  G  F  N  D  C  N  L  I  F  N  S  I  M  D  I  A  G  D  I  N  :  Y  Y  D  I  R  K  T  C  N  G  S  L  C  Y  D  F  S  R  M  E  T  Y  L  N  D  D  Q  V  K  E  A  L  G  V  P  T  S  I  D  F  V  S  C  S  S  S  V  Y  Q  A  M  R  M  D  W  M  K  N  L  E  V  G  I  P  Q  L  L  E  D  G  I  N  L  L  I  Y  A  G  E  Y  D  L  I  C  N  W  L  G  K  L  H  S  P  I  T  E  K  R  K  K  I  L  K  G  P  L  G  V </second_frame>
            <third_frame>   K  C  L  L  H  L  H  Y  S  L  F  S  L  L  L  Y  F  L  F  Y  V  P  K  L  P  F  H  Y  H  P  I  F  S  Y  N  L  I  M  I  L  L  V  Q  R  N  F  N  *  Q  W  V  K  N  *  L  G  N  L  I  C  S  L  N  M  T  L  I  L  F  L  Q  R  T  I  I  M  K  I  N  Y  L  R  R  N  W  I  Y  L  I  L  V  I  L  V  P  L  S  K  T  *  V  I  M  L  V  I  F  L  L  *  T  L  N  L  Q   : G  C  S  I  F  S  L  N  Q  G  V  T  R  M  I  Q  *  *  Y  G  *  Q  E  V  Q  D  V  A  V  N  W  H  Y  F  M  K  M  D  L  L  K  Y  Q  K  I  C  L  L  S  G  M  I  L  V  G  T  R :   C  Q  T  L  Y  T  L  I  N  Q  L  E  L  V  S  V  I  L  L  M  K  V  T  F  D  T  M  R  L  V  *  A  M  T  F  M  I  S  Y  R :   P  S  S  M  L  I  L  S  M  *  I  M  I  S  T  L  L  E  N  H  M  L  D  I  I  F  L  H  L  L  L  E  F  I  K  E  T  *  R  K  K  E  F  T  *  T  S  R :   D  L  L  *  V  M  A  S  P  T  Q  K  S  S  I  K  L  T  P  T  I  L  W  I  *  N  *  S  I  K  P  T  T  I  I  *  I  N  Y  I  Q  H  V  N  K  K  L  N  F  V  :  Q  V  V  V  K  M  H  V  *  R  D  L  T  I  A  T  S  F  S  T  V  *  W  T  L  L  A  T  *  I :   T  M  I  S  G  R  P  A  M  V  A  S  A  M  T  S  R  E  W  K  L  T  S  T  M  T  K  L  R  K  P  S  V  F  P  P  V  L  T  L  S  R  V  V  L  P  F  I  R  R  *  G  W  T  G  *  R  I  L  K  S  V  F  L  N  F  L  R  M  V  S  I  Y  S  F  M  L  E  N  M  T  L  S  A  T  G  L  V  S  F  I  H  L  *  Q  K  S  A  K  K  F  *  K  V  R  *  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51816" stop="52162"/>
                    <exon start="52873" stop="53041"/>
                    <exon start="54029" stop="54148"/>
                    <exon start="54250" stop="54393"/>
                    <exon start="54485" stop="54635"/>
                    <exon start="54749" stop="54837"/>
                    <exon start="54955" stop="55278"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1344</number_coding_nucleotides>
                  <number_encoded_amino_acids>448</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMSSSSSLFPLLFVAIFLVLCSQIALSLSPNFFLQSHNDIISPKKLQLTMGEKLIRQLNLFPKHDINIVSSKDNNYENKLFEKKLDLSYLGDSGATVQDLGHHAGYFPLINTKSARMFYFFFESRSNKNDPVVIWLTGGPGCSSELALFYENGPFKISKNMSLVWNDFGWDKVSNLIYVDQPTGTGFSYTSDESDIRHNETGVSNDLYDFLQAFFNAHPEYVNNDFYITGESYAGHYIPAFASRVHQGNIKKEGIHINLKGFAIGNGLTNPEIQYKAYTDYSLDMKLINQTDYDYINQLYPTCQQEIKLCASGSEDACMKGFNDCNLIFNSIMDIAGDINYYDIRKTCNGSLCYDFSRMETYLNDDQVKEALGVPTSIDFVSCSSSVYQAMRMDWMKNLEVGIPQLLEDGINLLIYAGEYDLICNWLGKLHSPITEKRKKILKGPLGV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="55446" e_stop="55928"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="55446" e_stop="55928" e_length="483"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55446" stop="55928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732070" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACGCTCAACACGCTTTTGAGCCTCGCTTAAGGGCTTAAGCACGCTTTTGACAACACTGATTAATCTAAACAGTGTCGAGTAAACTATTGTTTCTTGAAATGGACAGGGAACTCAAATTGGGTGCATGCAGTAGAATGGTCTGGGCAGAAAGGCTTTGAGGCTGCACCATCTGTTTCTTTCACAGTAGATGGTGAGGAGAAAGGTGTTCAAAAGAAGTATGGACCACTGATATTCCTCAAGGTCCACGATGCAGGTCATATGGTGCCGATGGACCAACCTAAGGCAGCACTTGAAATGCTTCAGCGGTGGACTCATGGCAACTTGTGAAGAATCAATTTATGAACCACACATACTGAAACAGATTAACAATTTACCAGCTTTATGATATCACCAAACATAGAAAATCATGTAGATACATTTCACCCTTTCAGGTGAATGTTGTTCTTCTAAGATAATTGGGTTAAGCATTATAACATATAGT</gDNA_template>
            <first_frame> Q  R  S  T  R  F  *  A  S  L  K  G  L  S  T  L  L  T  T  L  I  N  L  N  S  V  E  *  T  I  V  S  *  N  G  Q  G  T  Q  I  G  C  M  Q  *  N  G  L  G  R  K  A  L  R  L  H  H  L  F  L  S  Q  *  M  V  R  R  K  V  F  K  R  S  M  D  H  *  Y  S  S  R  S  T  M  Q  V  I  W  C  R  W  T  N  L  R  Q  H  L  K  C  F  S  G  G  L  M  A  T  C  E  E  S  I  Y  E  P  H  I  L  K  Q  I  N  N  L  P  A  L  *  Y  H  Q  T  *  K  I  M  *  I  H  F  T  L  S  G  E  C  C  S  S  K  I  I  G  L  S  I  I  T  Y  S </first_frame>
            <second_frame>  N  A  Q  H  A  F  E  P  R  L  R  A  *  A  R  F  *  Q  H  *  L  I  *  T  V  S  S  K  L  L  F  L  E  M  D  R  E  L  K  L  G  A  C  S  R  M  V  W  A  E  R  L  *  G  C  T  I  C  F  F  H  S  R  W  *  G  E  R  C  S  K  E  V  W  T  T  D  I  P  Q  G  P  R  C  R  S  Y  G  A  D  G  P  T  *  G  S  T  *  N  A  S  A  V  D  S  W  Q  L  V  K  N  Q  F  M  N  H  T  Y  *  N  R  L  T  I  Y  Q  L  Y  D  I  T  K  H  R  K  S  C  R  Y  I  S  P  F  Q  V  N  V  V  L  L  R  *  L  G  *  A  L  *  H  I   </second_frame>
            <third_frame>   T  L  N  T  L  L  S  L  A  *  G  L  K  H  A  F  D  N  T  D  *  S  K  Q  C  R  V  N  Y  C  F  L  K  W  T  G  N  S  N  W  V  H  A  V  E  W  S  G  Q  K  G  F  E  A  A  P  S  V  S  F  T  V  D  G  E  E  K  G  V  Q  K  K  Y  G  P  L  I  F  L  K  V  H  D  A  G  H  M  V  P  M  D  Q  P  K  A  A  L  E  M  L  Q  R  W  T  H  G  N  L  *  R  I  N  L  *  T  T  H  T  E  T  D  *  Q  F  T  S  F  M  I  S  P  N  I  E  N  H  V  D  T  F  H  P  F  R  *  M  L  F  F  *  D  N  W  V  K  H  Y  N  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55511" stop="55774"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKQCRVNYCFLKWTGNSNWVHAVEWSGQKGFEAAPSVSFTVDGEEKGVQKKYGPLIFLKVHDAGHMVPMDQPKAALEMLQRWTHGNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="54192" PGL_stop="53906"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54192" e_stop="53906"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="54192" e_stop="53906" e_length="287"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54192" stop="53906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546092" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGTGGAGTCTGAGAAATACCGAGAAGAGGTGAAGGGAACAAACCTGTAGGAAATCATAAAGGTCATTGCTTACACCAGTCTCATTGTGTCGAATGTCACTTTCATCAGAAGTATAACTGAAACCAGTTCCAGTTGGTTGATCAACGTATATAAGGTTTGACACCTGTCGATTCGCAACAAGTAAATGGAAATATTATTTTCCGAGTTTAACTTTTGAACGTTGATAGTGTAAAAATTCTTTATACCAACTATTTTATGAGTAAAATCCTTTTTCTTTTTTTAAAAA</gDNA_template>
            <first_frame> K  W  S  L  R  N  T  E  K  R  *  R  E  Q  T  C  R  K  S  *  R  S  L  L  T  P  V  S  L  C  R  M  S  L  S  S  E  V  *  L  K  P  V  P  V  G  *  S  T  Y  I  R  F  D  T  C  R  F  A  T  S  K  W  K  Y  Y  F  P  S  L  T  F  E  R  *  *  C  K  N  S  L  Y  Q  L  F  Y  E  *  N  P  F  S  F  F  K   </first_frame>
            <second_frame>  S  G  V  *  E  I  P  R  R  G  E  G  N  K  P  V  G  N  H  K  G  H  C  L  H  Q  S  H  C  V  E  C  H  F  H  Q  K  Y  N  *  N  Q  F  Q  L  V  D  Q  R  I  *  G  L  T  P  V  D  S  Q  Q  V  N  G  N  I  I  F  R  V  *  L  L  N  V  D  S  V  K  I  L  Y  T  N  Y  F  M  S  K  I  L  F  L  F  L  K  </second_frame>
            <third_frame>   V  E  S  E  K  Y  R  E  E  V  K  G  T  N  L  *  E  I  I  K  V  I  A  Y  T  S  L  I  V  S  N  V  T  F  I  R  S  I  T  E  T  S  S  S  W  L  I  N  V  Y  K  V  *  H  L  S  I  R  N  K  *  M  E  I  L  F  S  E  F  N  F  *  T  L  I  V  *  K  F  F  I  P  T  I  L  *  V  K  S  F  F  F  F  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0249E07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="55963" PGL_stop="55345"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55963" e_stop="55345"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="55963" e_stop="55345" e_length="619"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55963" stop="55345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429867" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAATAACAAATTATAAGGGCAAACAGTGTGGTTCACTATATGTTATAATGCTTAACCCAATTATCTTAGAAGAACAACATTCACCTGAAAGGGTGAAATGTATCTACATGATTTTCTATGTTTGGTGATATCATAAAGCTGGTAAATTGTTAATCTGTTTCAGTATGTGTGGTTCATAAATTGATTCTTCACAAGTTGCCATGAGTCCACCGCTGAAGCATTTCAAGTGCTGCCTTAGGTTGGTCCATCGGCACCATATGACCTGCATCGTGGACCTTGAGGAATATCAGTGGTCCATACTTCTTTTGAACACCTTTCTCCTCACCATCTACTGTGAAAGAAACAGATGGTGCAGCCTCAAAGCCTTTCTGCCCAGACCATTCTACTGCATGCACCCAATTTGAGTTCCCTGTCCATTTCAAGAAACAATAGTTTACTCGACACTGTTTAGATTAATCAGTGTTGTCAAAAGCGTGCTTAAGCCCTTAAGCGAGGCTCAAAAGCGTGTTGAGCGTTGTGCCTCACTTAATGTGCACTTCAGCGTCGTCATCAAGGTTGTAAGGCATACTTTTCCTCGCCAATGAGCCTCTTCTGAAGAGGCGACACTAATTGATATTT</gDNA_template>
            <first_frame> G  I  T  N  Y  K  G  K  Q  C  G  S  L  Y  V  I  M  L  N  P  I  I  L  E  E  Q  H  S  P  E  R  V  K  C  I  Y  M  I  F  Y  V  W  *  Y  H  K  A  G  K  L  L  I  C  F  S  M  C  G  S  *  I  D  S  S  Q  V  A  M  S  P  P  L  K  H  F  K  C  C  L  R  L  V  H  R  H  H  M  T  C  I  V  D  L  E  E  Y  Q  W  S  I  L  L  L  N  T  F  L  L  T  I  Y  C  E  R  N  R  W  C  S  L  K  A  F  L  P  R  P  F  Y  C  M  H  P  I  *  V  P  C  P  F  Q  E  T  I  V  Y  S  T  L  F  R  L  I  S  V  V  K  S  V  L  K  P  L  S  E  A  Q  K  R  V  E  R  C  A  S  L  N  V  H  F  S  V  V  I  K  V  V  R  H  T  F  P  R  Q  *  A  S  S  E  E  A  T  L  I  D  I  </first_frame>
            <second_frame>  E  *  Q  I  I  R  A  N  S  V  V  H  Y  M  L  *  C  L  T  Q  L  S  *  K  N  N  I  H  L  K  G  *  N  V  S  T  *  F  S  M  F  G  D  I  I  K  L  V  N  C  *  S  V  S  V  C  V  V  H  K  L  I  L  H  K  L  P  *  V  H  R  *  S  I  S  S  A  A  L  G  W  S  I  G  T  I  *  P  A  S  W  T  L  R  N  I  S  G  P  Y  F  F  *  T  P  F  S  S  P  S  T  V  K  E  T  D  G  A  A  S  K  P  F  C  P  D  H  S  T  A  C  T  Q  F  E  F  P  V  H  F  K  K  Q  *  F  T  R  H  C  L  D  *  S  V  L  S  K  A  C  L  S  P  *  A  R  L  K  S  V  L  S  V  V  P  H  L  M  C  T  S  A  S  S  S  R  L  *  G  I  L  F  L  A  N  E  P  L  L  K  R  R  H  *  L  I  F </second_frame>
            <third_frame>   N  N  K  L  *  G  Q  T  V  W  F  T  I  C  Y  N  A  *  P  N  Y  L  R  R  T  T  F  T  *  K  G  E  M  Y  L  H  D  F  L  C  L  V  I  S  *  S  W  *  I  V  N  L  F  Q  Y  V  W  F  I  N  *  F  F  T  S  C  H  E  S  T  A  E  A  F  Q  V  L  P  *  V  G  P  S  A  P  Y  D  L  H  R  G  P  *  G  I  S  V  V  H  T  S  F  E  H  L  S  P  H  H  L  L  *  K  K  Q  M  V  Q  P  Q  S  L  S  A  Q  T  I  L  L  H  A  P  N  L  S  S  L  S  I  S  R  N  N  S  L  L  D  T  V  *  I  N  Q  C  C  Q  K  R  A  *  A  L  K  R  G  S  K  A  C  *  A  L  C  L  T  *  C  A  L  Q  R  R  H  Q  G  C  K  A  Y  F  S  S  P  M  S  L  F  *  R  G  D  T  N  *  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55783" stop="55559"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDSSQVAMSPPLKHFKCCLRLVHRHHMTCIVDLEEYQWSILLLNTFLLTIYCERNRWCSLKAFLPRPFYCMHPI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="59566" PGL_stop="56782"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59566" e_stop="59195"/>
            <exon e_start="59076" e_stop="58956"/>
            <exon e_start="57155" e_stop="56782"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="0.957"/>
          <exon-intron don_prob="0.994" acc_prob="0.947" e_score="0.983"/>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="59566" e_stop="59195" e_length="372"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="59194" i_stop="59077" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="59076" e_stop="58956" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.947">
            <gDNA_intron_boundary i_start="58955" i_stop="57156" i_length="1800"/>
          </intron>
          <exon e_serial="3" e_score="0.921">
            <gDNA_exon_boundary e_start="57155" e_stop="56782" e_length="374"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59566" stop="59195"/>
              <exon start="59076" stop="58956"/>
              <exon start="57155" stop="56973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59565" stop="59195"/>
              <exon start="59076" stop="58956"/>
              <exon start="57155" stop="57079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59484" stop="59195"/>
              <exon start="59076" stop="58956"/>
              <exon start="57155" stop="57073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57046" stop="56782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614958" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCAATCTTTCTCCTTCCACTGTACCATTTTCTTGAACAAACTGAATATTCTGAACAAGAAAAACTCCATCAATGAATCCAGAAAGCTCCAATAACAACAGCCAAACGAACCCTAGAAAAAGACCATTAGTAGAAGAACCTAGCAATGACAAACAACCAATAACACTAAATTCCATGGTGGTAGCCATTGATCACAACAATCTCTTTTACACAGTTTGTTCTATATGTGAAAAGACTCTACCTGACCCTTCTCCAAATACCCAAATCCCCAATTCTTCTTCTTCTTCTTCATCATCATCTTCAATACCCTTTTGCAAAAATTGCAACTTTAACTCTGCTTCTTCTGGTTCCAAACGCCTCTTTCGTGTTCTT : ATGTCGATAGCTACTGAGAAAAGAGTGGTTGTGGTGATAATGTTTGATAGGGCAGCTAGGGTTTTGTTTGGTTGTTCTGCTGATGAGTTCTTTGATTTTGCCAAGACTCACCCTTTTGCTG : CTGCAGCTGCCGGTAATGCTTTGGAGGGAGAGATGTTGAAGATCACCTTGTCCAAACCAAAGAATGGAAATGCACGACATCTACGAGTGGTATCAGTTTTTCCATTGCGGACAGGTTTTCAGCCTGTGATCAAGACCTTGAGGGAACTATATCGAGCAAGAGGCGGTTCATAGCTATTGCATTCAGGTGTTTGTGTGTCAAATGTTCTTTTAAGCAGGCTTAATGTTTGTGTACATCACCATCGTTCCATTGACAAAAGGAACATGAATGCATCTTTTGTTAAATATTACTTTTCTCCTTTAAGCGTTACTCTTATTTTAGAAGACCATGGAGTCTGCTTCCATTATTATAGTTATCTATCTTATGAAAGCTTT</gDNA_template>
            <first_frame> I  N  L  S  P  S  T  V  P  F  S  *  T  N  *  I  F  *  T  R  K  T  P  S  M  N  P  E  S  S  N  N  N  S  Q  T  N  P  R  K  R  P  L  V  E  E  P  S  N  D  K  Q  P  I  T  L  N  S  M  V  V  A  I  D  H  N  N  L  F  Y  T  V  C  S  I  C  E  K  T  L  P  D  P  S  P  N  T  Q  I  P  N  S  S  S  S  S  S  S  S  S  S  I  P  F  C  K  N  C  N  F  N  S  A  S  S  G  S  K  R  L  F  R  V  L  :  M  S  I  A  T  E  K  R  V  V  V  V  I  M  F  D  R  A  A  R  V  L  F  G  C  S  A  D  E  F  F  D  F  A  K  T  H  P  F  A   : A  A  A  A  G  N  A  L  E  G  E  M  L  K  I  T  L  S  K  P  K  N  G  N  A  R  H  L  R  V  V  S  V  F  P  L  R  T  G  F  Q  P  V  I  K  T  L  R  E  L  Y  R  A  R  G  G  S  *  L  L  H  S  G  V  C  V  S  N  V  L  L  S  R  L  N  V  C  V  H  H  H  R  S  I  D  K  R  N  M  N  A  S  F  V  K  Y  Y  F  S  P  L  S  V  T  L  I  L  E  D  H  G  V  C  F  H  Y  Y  S  Y  L  S  Y  E  S  F </first_frame>
            <second_frame>  S  I  F  L  L  P  L  Y  H  F  L  E  Q  T  E  Y  S  E  Q  E  K  L  H  Q  *  I  Q  K  A  P  I  T  T  A  K  R  T  L  E  K  D  H  *  *  K  N  L  A  M  T  N  N  Q  *  H  *  I  P  W  W  *  P  L  I  T  T  I  S  F  T  Q  F  V  L  Y  V  K  R  L  Y  L  T  L  L  Q  I  P  K  S  P  I  L  L  L  L  L  H  H  H  L  Q  Y  P  F  A  K  I  A  T  L  T  L  L  L  L  V  P  N  A  S  F  V  F  L :   C  R  *  L  L  R  K  E  W  L  W  *  *  C  L  I  G  Q  L  G  F  C  L  V  V  L  L  M  S  S  L  I  L  P  R  L  T  L  L  L  :  L  Q  L  P  V  M  L  W  R  E  R  C  *  R  S  P  C  P  N  Q  R  M  E  M  H  D  I  Y  E  W  Y  Q  F  F  H  C  G  Q  V  F  S  L  *  S  R  P  *  G  N  Y  I  E  Q  E  A  V  H  S  Y  C  I  Q  V  F  V  C  Q  M  F  F  *  A  G  L  M  F  V  Y  I  T  I  V  P  L  T  K  G  T  *  M  H  L  L  L  N  I  T  F  L  L  *  A  L  L  L  F  *  K  T  M  E  S  A  S  I  I  I  V  I  Y  L  M  K  A   </second_frame>
            <third_frame>   Q  S  F  S  F  H  C  T  I  F  L  N  K  L  N  I  L  N  K  K  N  S  I  N  E  S  R  K  L  Q  *  Q  Q  P  N  E  P  *  K  K  T  I  S  R  R  T  *  Q  *  Q  T  T  N  N  T  K  F  H  G  G  S  H  *  S  Q  Q  S  L  L  H  S  L  F  Y  M  *  K  D  S  T  *  P  F  S  K  Y  P  N  P  Q  F  F  F  F  F  F  I  I  I  F  N  T  L  L  Q  K  L  Q  L  *  L  C  F  F  W  F  Q  T  P  L  S  C  S   : Y  V  D  S  Y  *  E  K  S  G  C  G  D  N  V  *  *  G  S  *  G  F  V  W  L  F  C  *  *  V  L  *  F  C  Q  D  S  P  F  C  C :   C  S  C  R  *  C  F  G  G  R  D  V  E  D  H  L  V  Q  T  K  E  W  K  C  T  T  S  T  S  G  I  S  F  S  I  A  D  R  F  S  A  C  D  Q  D  L  E  G  T  I  S  S  K  R  R  F  I  A  I  A  F  R  C  L  C  V  K  C  S  F  K  Q  A  *  C  L  C  T  S  P  S  F  H  *  Q  K  E  H  E  C  I  F  C  *  I  L  L  F  S  F  K  R  Y  S  Y  F  R  R  P  W  S  L  L  P  L  L  *  L  S  I  L  *  K  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59512" stop="59195"/>
                    <exon start="59076" stop="58956"/>
                    <exon start="57155" stop="56983"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRKTPSMNPESSNNNSQTNPRKRPLVEEPSNDKQPITLNSMVVAIDHNNLFYTVCSICEKTLPDPSPNTQIPNSSSSSSSSSSIPFCKNCNFNSASSGSKRLFRVLMSIATEKRVVVVIMFDRAARVLFGCSADEFFDFAKTHPFAAAAAGNALEGEMLKITLSKPKNGNARHLRVVSVFPLRTGFQPVIKTLRELYRARGGS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56982" stop="56782"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLHSGVCVSNVLLSRLNVCVHHHRSIDKRNMNASFVKYYFSPLSVTLILEDHGVCFHYYSYLSYESF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="59484" e_stop="59144"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="59484" e_stop="59144" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59484" stop="59144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620589" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGCTCCAATAACAACAGCCAAACGAACCCTAGAAAAAGACCATTAGTAGAAGAACCTAGCAATGACAAACAACCAATAACACTAAATTCCATGGTGGTAGCCATTGATCACAACAATCTCTTTTACACAGTTTGTTCTATATGTGAAAAGACTCTACCTGACCCTTCTCCAAATACCCAAATCCCCAATTCTTCTTCTTCTTCTTCATCATCATCTTCAATACCCTTTTGCAAAAATTGCAACTTTAACTCTGCTTCTTCTGGTTCCAAACGCCTCTTTCGTGTTCTTGTATGTGAATTATTCTTTTTCTTTTCGTGTTGTTATCTGCAATGGTGATGC</gDNA_template>
            <first_frame> K  A  P  I  T  T  A  K  R  T  L  E  K  D  H  *  *  K  N  L  A  M  T  N  N  Q  *  H  *  I  P  W  W  *  P  L  I  T  T  I  S  F  T  Q  F  V  L  Y  V  K  R  L  Y  L  T  L  L  Q  I  P  K  S  P  I  L  L  L  L  L  H  H  H  L  Q  Y  P  F  A  K  I  A  T  L  T  L  L  L  L  V  P  N  A  S  F  V  F  L  Y  V  N  Y  S  F  S  F  R  V  V  I  C  N  G  D   </first_frame>
            <second_frame>  K  L  Q  *  Q  Q  P  N  E  P  *  K  K  T  I  S  R  R  T  *  Q  *  Q  T  T  N  N  T  K  F  H  G  G  S  H  *  S  Q  Q  S  L  L  H  S  L  F  Y  M  *  K  D  S  T  *  P  F  S  K  Y  P  N  P  Q  F  F  F  F  F  F  I  I  I  F  N  T  L  L  Q  K  L  Q  L  *  L  C  F  F  W  F  Q  T  P  L  S  C  S  C  M  *  I  I  L  F  L  F  V  L  L  S  A  M  V  M  </second_frame>
            <third_frame>   S  S  N  N  N  S  Q  T  N  P  R  K  R  P  L  V  E  E  P  S  N  D  K  Q  P  I  T  L  N  S  M  V  V  A  I  D  H  N  N  L  F  Y  T  V  C  S  I  C  E  K  T  L  P  D  P  S  P  N  T  Q  I  P  N  S  S  S  S  S  S  S  S  S  S  I  P  F  C  K  N  C  N  F  N  S  A  S  S  G  S  K  R  L  F  R  V  L  V  C  E  L  F  F  F  F  S  C  C  Y  L  Q  W  *  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59482" stop="59147"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSNNNSQTNPRKRPLVEEPSNDKQPITLNSMVVAIDHNNLFYTVCSICEKTLPDPSPNTQIPNSSSSSSSSSSIPFCKNCNFNSASSGSKRLFRVLVCELFFFFSCCYLQW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="73359" PGL_stop="74140"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73359" e_stop="73413"/>
            <exon e_start="73544" e_stop="74140"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.806" acc_prob="0.000" e_score="0.855"/>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.855">
            <gDNA_exon_boundary e_start="73359" e_stop="73413" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="0.806" acc_prob="0.000">
            <gDNA_intron_boundary i_start="73414" i_stop="73543" i_length="130"/>
          </intron>
          <exon e_serial="2" e_score="0.930">
            <gDNA_exon_boundary e_start="73544" e_stop="74140" e_length="597"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73359" stop="73413"/>
              <exon start="73544" stop="74140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273357" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCGTTTCTATTTTTCTAATTTTCTAAAGTTTTTAAAAGCCTTTTCTTTATAAG : ATATGCATCCGTCAAATGTATACGTACATCCTGGTCCAGTAGAGCATGATGTATTAAAAATTTAAGTTCATCATCGTTCCGAAGGAATTCGGAATGATAGCATAAAAGAAGAGAGGTCTTGCTTATATACGTGTCGTGGTGATATTGAATTTTGGCAACATATAAAATATCATCCATTACATTCTCGCATCCGTCAATATTTTGAAAATTGTGGATTAAAAGGAATTCTTGATGTAGGATGTGTGCCGTATGACTCCAGATTAATTTCTGCTTTAATTGAAAGGTGACGTCCAGAAACACACATTTTTCACATGCGAACTGGCGAGACTACCATAATTTTACAAGATGTTGAAATTTTATTCGGAATGGTAGTAGATGGTAGTCCTATAATTTTAAATGGAGCTGATTCTTTAGGGATTATAGGTAGACAAGAAATGATATTTGAATTAACAGGATGGTTACCCGATACTGGTTGTTTTTCTGGTGTTAGTAGATTGTTAACATATAAATTGATTGATTATATTGAAGGTTTAGATGGTATTAATGATCACTCAACAGAGCATGAAGTGCAACATTGATTTAGATTATATTCATTAT</gDNA_template>
            <first_frame> K  R  F  Y  F  S  N  F  L  K  F  L  K  A  F  S  L  *   : D  M  H  P  S  N  V  Y  V  H  P  G  P  V  E  H  D  V  L  K  I  *  V  H  H  R  S  E  G  I  R  N  D  S  I  K  E  E  R  S  C  L  Y  T  C  R  G  D  I  E  F  W  Q  H  I  K  Y  H  P  L  H  S  R  I  R  Q  Y  F  E  N  C  G  L  K  G  I  L  D  V  G  C  V  P  Y  D  S  R  L  I  S  A  L  I  E  R  *  R  P  E  T  H  I  F  H  M  R  T  G  E  T  T  I  I  L  Q  D  V  E  I  L  F  G  M  V  V  D  G  S  P  I  I  L  N  G  A  D  S  L  G  I  I  G  R  Q  E  M  I  F  E  L  T  G  W  L  P  D  T  G  C  F  S  G  V  S  R  L  L  T  Y  K  L  I  D  Y  I  E  G  L  D  G  I  N  D  H  S  T  E  H  E  V  Q  H  *  F  R  L  Y  S  L  </first_frame>
            <second_frame>  S  V  S  I  F  L  I  F  *  S  F  *  K  P  F  L  Y  K  :  I  C  I  R  Q  M  Y  T  Y  I  L  V  Q  *  S  M  M  Y  *  K  F  K  F  I  I  V  P  K  E  F  G  M  I  A  *  K  K  R  G  L  A  Y  I  R  V  V  V  I  L  N  F  G  N  I  *  N  I  I  H  Y  I  L  A  S  V  N  I  L  K  I  V  D  *  K  E  F  L  M  *  D  V  C  R  M  T  P  D  *  F  L  L  *  L  K  G  D  V  Q  K  H  T  F  F  T  C  E  L  A  R  L  P  *  F  Y  K  M  L  K  F  Y  S  E  W  *  *  M  V  V  L  *  F  *  M  E  L  I  L  *  G  L  *  V  D  K  K  *  Y  L  N  *  Q  D  G  Y  P  I  L  V  V  F  L  V  L  V  D  C  *  H  I  N  *  L  I  I  L  K  V  *  M  V  L  M  I  T  Q  Q  S  M  K  C  N  I  D  L  D  Y  I  H  Y </second_frame>
            <third_frame>   A  F  L  F  F  *  F  S  K  V  F  K  S  L  F  F  I  R :   Y  A  S  V  K  C  I  R  T  S  W  S  S  R  A  *  C  I  K  N  L  S  S  S  S  F  R  R  N  S  E  *  *  H  K  R  R  E  V  L  L  I  Y  V  S  W  *  Y  *  I  L  A  T  Y  K  I  S  S  I  T  F  S  H  P  S  I  F  *  K  L  W  I  K  R  N  S  *  C  R  M  C  A  V  *  L  Q  I  N  F  C  F  N  *  K  V  T  S  R  N  T  H  F  S  H  A  N  W  R  D  Y  H  N  F  T  R  C  *  N  F  I  R  N  G  S  R  W  *  S  Y  N  F  K  W  S  *  F  F  R  D  Y  R  *  T  R  N  D  I  *  I  N  R  M  V  T  R  Y  W  L  F  F  W  C  *  *  I  V  N  I  *  I  D  *  L  Y  *  R  F  R  W  Y  *  *  S  L  N  R  A  *  S  A  T  L  I  *  I  I  F  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73831" stop="74121"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPETHIFHMRTGETTIILQDVEILFGMVVDGSPIILNGADSLGIIGRQEMIFELTGWLPDTGCFSGVSRLLTYKLIDYIEGLDGINDHSTEHEVQH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73609" stop="73830"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VHHRSEGIRNDSIKEERSCLYTCRGDIEFWQHIKYHPLHSRIRQYFENCGLKGILDVGCVPYDSRLISALIER*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="83564" PGL_stop="83799"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83564" e_stop="83799"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="83564" e_stop="83799" e_length="236"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83564" stop="83799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATGAACCGAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTTCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATATTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTTGTTAATTGTG</gDNA_template>
            <first_frame> *  *  T  E  F  P  N  E  Y  D  E  E  A  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  C  *  L   </first_frame>
            <second_frame>  N  E  P  N  S  Q  M  S  M  M  R  R  R  E  S  S  L  M  F  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  Y  I  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  F  V  N  C  </second_frame>
            <third_frame>   M  N  R  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  S  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  L  L  I  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0249E07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="83805" PGL_stop="84519"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83805" e_stop="84519"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="83805" e_stop="84519" e_length="715"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83805" stop="84519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84228" stop="84519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGCAAACGTGCCATCGTCTTCAACTCAACCGCAACTCTAGCCAGTCTTCGTCACATCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCCTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTACTTGTTTTAGTTTTTAGAATACTCTTAGTCTAGTAATTTGATCATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGAAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTTTTATTTAATGAGTTTGAGTCTTCCGCATTATTTATTGTTGATATTATATTGAAATGTTAGAGTTAAGATTGGTTGGTTCGCTCACATAGGAGGGTATGTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCATTCTTTCTTCCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCAGCACCGGCAGGACAGGGTGCGTCTGAGCCAGCCACTGGGGCTGTAG</gDNA_template>
            <first_frame> Q  Q  T  C  H  R  L  Q  L  N  R  N  S  S  Q  S  S  S  H  R  I  F  R  V  S  *  C  F  *  L  G  L  D  L  L  P  H  V  L  M  P  *  S  S  G  M  D  *  L  L  L  V  L  V  F  R  I  L  L  V  *  *  F  D  H  R  C  S  C  D  D  D  F  Q  I  L  G  N  N  R  C  *  I  L  E  V  N  E  L  V  L  F  N  E  F  E  S  S  A  L  F  I  V  D  I  I  L  K  C  *  S  *  D  W  L  V  R  S  H  R  R  V  C  V  G  A  S  R  G  P  D  L  G  R  D  K  L  G  I  R  A  L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  H  S  F  F  R  A  T  T  *  I  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  P  A  P  A  G  Q  G  A  S  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  S  K  R  A  I  V  F  N  S  T  A  T  L  A  S  L  R  H  I  G  S  S  G  *  A  N  A  S  S  L  D  W  I  F  F  L  M  S  *  C  L  E  V  P  A  W  T  S  F  Y  L  F  *  F  L  E  Y  S  *  S  S  N  L  I  I  D  V  L  V  M  M  T  S  R  F  W  E  I  I  D  V  E  F  *  K  L  M  N  W  F  Y  L  M  S  L  S  L  P  H  Y  L  L  L  I  L  Y  *  N  V  R  V  K  I  G  W  F  A  H  I  G  G  Y  V  W  V  P  V  A  A  R  I  W  V  V  T  N  L  V  S  E  H  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  I  L  S  S  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  Q  H  R  Q  D  R  V  R  L  S  Q  P  L  G  L  * </second_frame>
            <third_frame>   A  N  V  P  S  S  S  T  Q  P  Q  L  *  P  V  F  V  T  S  D  L  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  C  L  D  A  L  K  F  R  H  G  L  A  F  T  C  F  S  F  *  N  T  L  S  L  V  I  *  S  *  M  F  L  *  *  *  L  P  D  F  G  K  *  *  M  L  N  F  R  S  *  *  I  G  F  I  *  *  V  *  V  F  R  I  I  Y  C  *  Y  Y  I  E  M  L  E  L  R  L  V  G  S  L  T  *  E  G  M  C  G  C  Q  S  R  P  G  F  G  S  *  Q  T  W  Y  Q  S  I  R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  S  I  L  S  F  F  L  P  C  Y  Y  L  N  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  A  N  T  N  T  S  T  G  R  T  G  C  V  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84277" stop="84519"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFILSSVLLLESNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQHQHRQDRVRLSQPLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="84593" PGL_stop="85146"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84593" e_stop="85146"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="84593" e_stop="85146" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84593" stop="85146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGTCCATCTGATACTAGGGCAGTAACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTGCAGAATGAGGGATTGCCACCCCAGCCTACCCCAGAGATGATAAATCAGGTGCTCGCTTATCTTAGTGGGTTGTCCGATCAGGGTCAAACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTCGAAATTGAAACCTCCAGTCATCAAGGGTGCGGAATCTGAGGATGCTTATGATTTTCTGGTTGACTATCATGAGCTACTACATAATATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  S  I  *  Y  *  G  S  N  S  S  T  D  *  G  G  N  K  R  R  G  G  W  G  K  *  T  S  A  E  *  G  I  A  T  P  A  Y  P  R  D  D  K  S  G  A  R  L  S  *  W  V  V  R  S  G  S  N  T  S  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  C  G  S  P  H  G  C  L  I  G  H  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  H  Q  G  C  G  I  *  G  C  L  *  F  S  G  *  L  S  *  A  T  T  *  Y  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  N  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  A  P  E  V  Q  H  A  A  T  V  A  P  R  M  D  A  S  L  D  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  S  K  L  K  P  P  V  I  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  Y  H  E  L  L  H  N  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  V  H  L  I  L  G  Q  *  L  L  H  R  L  R  R  *  *  E  K  G  R  M  G  K  M  N  K  C  R  M  R  D  C  H  P  S  L  P  Q  R  *  *  I  R  C  S  L  I  L  V  G  C  P  I  R  V  K  H  L  Q  C  F  L  H  Q  H  L  R  L  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  P  H  W  T  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  R  N  *  N  L  Q  S  S  R  V  R  N  L  R  M  L  M  I  F  W  L  T  I  M  S  Y  Y  I  I  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84594" stop="85145"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPPPTEEVIREGEDGENEQVQNEGLPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPAPQAPEVQHAATVAPRMDASLDIGTFPRLTTGPIMTNDQHELFSKFSKLKPPVIKGAESEDAYDFLVDYHELLHNMGIVERFGVEFVSYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="85313" PGL_stop="84650"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85313" e_stop="84650"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="85313" e_stop="84650" e_length="664"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85313" stop="84650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCCGCTCTTGTGGACTGAAACACAGTTGGGTGGCATACCGGGATAATGCACAAAACTTAGCCTCATATGCAGTAACTGACATCCTACCTTGCTCTAGGATCAAGAACTCATCTCTCTTCCTATCCCTCAATGTCCGGGGAATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATATTATGTAGTAGCTCATGATAGTCAACCAGAAAATCATAAGCATCCTCAGATTCCGCACCCTTGATGACTGGAGGTTTCAATTTCGAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATGCGGGGAGCCACAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGAGGTGTTTGACCCTGATCGGACAACCCACTAAGATAAGCGAGCACCTGATTTATCATCTCTGGGGTAGGCTGGGGTGGCAATCCCTCATTCTGCACTTGTTCATTTTCCCCATCCTCCCCTTCT</gDNA_template>
            <first_frame> N  P  L  L  W  T  E  T  Q  L  G  G  I  P  G  *  C  T  K  L  S  L  I  C  S  N  *  H  P  T  L  L  *  D  Q  E  L  I  S  L  P  I  P  Q  C  P  G  N  I  L  L  H  K  Q  A  R  E  *  C  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  I  M  *  *  L  M  I  V  N  Q  K  I  I  S  I  L  R  F  R  T  L  D  D  W  R  F  Q  F  R  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  V  Q  *  G  I  H  A  G  S  H  S  S  R  M  L  Y  L  R  S  L  R  C  W  C  R  K  H  W  R  C  L  T  L  I  G  Q  P  T  K  I  S  E  H  L  I  Y  H  L  W  G  R  L  G  W  Q  S  L  I  L  H  L  F  I  F  P  I  L  P  F  </first_frame>
            <second_frame>  I  R  S  C  G  L  K  H  S  W  V  A  Y  R  D  N  A  Q  N  L  A  S  Y  A  V  T  D  I  L  P  C  S  R  I  K  N  S  S  L  F  L  S  L  N  V  R  G  I  Y  F  S  I  N  K  L  E  N  D  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  *  S  T  R  K  S  *  A  S  S  D  S  A  P  L  M  T  G  G  F  N  F  E  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  E  A  S  M  R  G  A  T  V  A  A  C  C  T  S  G  A  *  G  A  G  A  E  N  T  G  G  V  *  P  *  S  D  N  P  L  R  *  A  S  T  *  F  I  I  S  G  V  G  W  G  G  N  P  S  F  C  T  C  S  F  S  P  S  S  P  S </second_frame>
            <third_frame>   S  A  L  V  D  *  N  T  V  G  W  H  T  G  I  M  H  K  T  *  P  H  M  Q  *  L  T  S  Y  L  A  L  G  S  R  T  H  L  S  S  Y  P  S  M  S  G  E  Y  T  S  P  *  T  S  *  R  M  M  P  K  S  *  V  V  P  L  L  V  D  T  Q  H  V  T  A  T  T  F  W  R  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  Y  Y  V  V  A  H  D  S  Q  P  E  N  H  K  H  P  Q  I  P  H  P  *  *  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  C  P  M  R  H  P  C  G  E  P  Q  *  P  H  V  V  P  P  E  P  E  V  L  V  Q  K  T  L  E  V  F  D  P  D  R  T  T  H  *  D  K  R  A  P  D  L  S  S  L  G  *  A  G  V  A  I  P  H  S  A  L  V  H  F  P  H  P  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85312" stop="85106"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRSCGLKHSWVAYRDNAQNLASYAVTDILPCSRIKNSSLFLSLNVRGIYFSINKLENDAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84848" stop="84651"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIHAGSHSSRMLYLRSLRCWCRKHWRCLTLIGQPTKISEHLIYHLWGRLGWQSLILHLFIFPILPF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="85220" PGL_stop="86660"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85220" e_stop="85392"/>
            <exon e_start="86133" e_stop="86660"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.896"/>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.896">
            <gDNA_exon_boundary e_start="85220" e_stop="85392" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="85393" i_stop="86132" i_length="740"/>
          </intron>
          <exon e_serial="2" e_score="0.905">
            <gDNA_exon_boundary e_start="86133" e_stop="86660" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85220" stop="85392"/>
              <exon start="86133" stop="86660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCAGTTACTGCATATGAGGCTAAGTTTTGTGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAAGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCTTTCCAAG : AAATGGTTGACTTTGATGTAATTTTGGGTATGACTTGGCTTTCACTGAATTTTGCAATCTTGGATGGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTTTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTCCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTGGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGTAGATCTTCCTGGTATGCCACCAGATAGGGATATCGATTCCTGTATTGATCTTGAACCGGAAACTCGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCACGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAGGGCTTCATTAGACCAAGTGCATCGCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</gDNA_template>
            <first_frame> A  R  *  D  V  S  Y  C  I  *  G  *  V  L  C  I  I  P  V  C  H  P  T  V  F  Q  S  T  R  A  D  S  P  F  C  E  R  V  E  I  R  V  A  D  F  S  L  T  G  S  G  Y  S  E  I  F  P  R :   N  G  *  L  *  C  N  F  G  Y  D  L  A  F  T  E  F  C  N  L  G  W  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  L  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  P  S  C  *  E  N  G  *  *  R  V  F  G  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  G  G  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  R  F  L  Y  *  S  *  T  G  N  S  P  H  F  Y  T  P  L  *  N  G  S  H  G  V  K  R  V  K  S  P  T  S  R  V  V  E  Q  G  L  H  *  T  K  C  I  A  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  D  V  H  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  T  A  Y  E  A  K  F  C  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q   : E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  L  N  F  A  I  L  D  G  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  V  D  L  P  G  M  P  P  D  R  D  I  D  S  C  I  D  L  E  P  E  T  R  P  I  F  I  P  P  Y  R  M  A  P  T  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  Q  L  L  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  N  C  V  S  V  H  K  S  G  F  A  V  L  *  K  G  *  D  Q  S  C  G  F  Q  P  Y  R  *  R  L  Q  R  N  L  S  K  :  K  W  L  T  L  M  *  F  W  V  *  L  G  F  H  *  I  L  Q  S  W  M  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  F  G  R  V  T  T  L  P  I  R  C  V  S  S  P  S  F  V  L  R  K  W  L  V  K  G  V  W  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  R  W  S  V  S  F  W  M  C  S  L  *  I  F  L  V  C  H  Q  I  G  I  S  I  P  V  L  I  L  N  R  K  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  P  N  F  K  S  C  *  A  R  A  S  L  D  Q  V  H  R  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85221" stop="85392"/>
                    <exon start="86133" stop="86659"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVTAYEAKFCALSRYATQLCFSPQERIRRFVKGLRSELRISALQVAATAKSFQEMVDFDVILGMTWLSLNFAILDGNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTTQVPSIESVSVVREFLDVFPVDLPGMPPDRDIDSCIDLEPETRPIFIPPYRMAPTELRELKAQLQELLSKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="87232" PGL_stop="85908"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87232" e_stop="85908"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="87232" e_stop="85908" e_length="1325"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87232" stop="86520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87232" stop="86637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87232" stop="86707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87161" stop="86482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87161" stop="86803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86712" stop="86054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86643" stop="85908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86643" stop="85983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86240" stop="85910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCCGTAGTAGCTAGCTAACCCAACAAAGCTTCTTATTTCTAACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCAGGTTCCTCCTTGCTCTTTGAGTAAACCAGTATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCACATACCTCGTTCGAAAAGCAGTCTTTGGCACATACGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATGTTAGAGAAGACACAAGCACCTTGTAACTGGTCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGCGATGCACTTGGTCTAATGAAGCCCTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGTGGGAGCCATTCTATAAGGGGGTATAAAAATGGGGCGAGTTTCCGGTTCAAGATCAATACAGGAATCGATATCCCTATCTGGTGGCATACCAGGAAGATCTACAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCCAAACACCCTTTACTAACCATTTTCTTAGCACGAAGGAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACCATCCAAGATTGCAAAATTCAGTGAAAGCCAAGTCATACCCAAAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGTAATTCACAAGGTAAATTTAGACCATTAGCAAATGAAGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATACAATCACAAACCGAAA</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  S  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  R  F  L  L  A  L  *  V  N  Q  Y  I  I  N  E  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  A  H  E  S  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  H  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  V  R  E  D  T  S  T  L  *  L  V  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  L  A  Q  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  K  N  G  A  S  F  R  F  K  I  N  T  G  I  D  I  P  I  W  W  H  T  R  K  I  Y  R  E  H  I  Q  K  L  T  D  H  R  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  Q  T  P  F  T  N  H  F  L  S  T  K  E  G  D  D  T  H  R  I  G  S  V  V  T  L  P  N  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  C  K  I  Q  *  K  P  S  H  T  Q  N  Y  I  K  V  N  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  I  H  Q  T  R  P  I  Y  F  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  Y  V  K  *  F  T  R  *  I  *  T  I  S  K  *  R  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  T  I  T  N  R   </first_frame>
            <second_frame>  N  P  L  T  N  R  P  *  *  L  A  N  P  T  K  L  L  I  S  N  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  G  S  S  L  L  F  E  *  T  S  I  S  S  M  N  T  I  T  K  R  S  R  Y  G  L  K  I  P  F  I  K  L  M  K  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  T  Y  L  V  R  K  A  V  F  G  T  Y  V  A  R  I  F  N  *  *  *  P  D  L  K  S  M  L  E  K  T  Q  A  P  C  N  W  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  V  G  A  I  L  *  G  G  I  K  M  G  R  V  S  G  S  R  S  I  Q  E  S  I  S  L  S  G  G  I  P  G  R  S  T  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  Q  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  P  S  K  I  A  K  F  S  E  S  Q  V  I  P  K  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  G  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  I  Q  S  Q  T  E  </second_frame>
            <third_frame>   I  P  *  Q  I  G  R  S  S  *  L  T  Q  Q  S  F  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  Q  V  P  P  C  S  L  S  K  P  V  Y  H  Q  *  I  R  S  Q  R  D  P  D  M  A  *  K  S  R  S  S  S  S  *  K  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  T  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  C  *  R  R  H  K  H  L  V  T  G  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  A  M  H  L  V  *  *  S  P  C  S  T  T  L  E  V  G  L  L  T  L  L  T  P  W  E  P  F  Y  K  G  V  *  K  W  G  E  F  P  V  Q  D  Q  Y  R  N  R  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  P  P  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  P  N  T  L  Y  *  P  F  S  *  H  E  G  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  K  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  H  P  R  L  Q  N  S  V  K  A  K  S  Y  P  K  L  H  Q  S  Q  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  N  S  P  N  K  T  Y  I  L  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  V  C  Q  V  I  H  K  V  N  L  D  H  *  Q  M  K  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  Y  N  H  K  P  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86527" stop="86243"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRGSHSIRGYKNGASFRFKINTGIDIPIWWHTRKIYREHIQKLTDHRNRLNRRYLGSVILEMCQESQTPFTNHFLSTKEGDDTHRIGSVVTLPN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86505" stop="86260"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIKMGRVSGSRSIQESISLSGGIPGRSTGNTSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86968" stop="86729"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VNQYIINEYDHKEIQIWLKNPVHQAHESSRGIRKTKRHHYKFVMHIPRSKSSLWHIRCPYFQLMITGSQVNVREDTSTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="88713" PGL_stop="88537"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88713" e_stop="88537"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="88713" e_stop="88537" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88713" stop="88537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTGTTGTAGGAGAACTCTGCTAAGTGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAGCACTTGAATCGTTCTTTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  I  L  E  *  *  L  L  L  *  E  N  S  A  K  C  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  S  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  G  P  Y  Q  Y  L  S  D  S  Y  C  C  R  R  T  L  L  S  V  R  S  Y  P  N  G  H  Q  T  L  S  H  M  H  E  A  Y  P  P  A  L  E  S  F  F  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  G  H  I  N  T  *  V  I  A  I  V  V  G  E  L  C  *  V  *  E  A  I  P  M  A  T  K  L  Y  H  T  C  T  K  H  I  L  Q  H  L  N  R  S  F  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0249E07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="96789" PGL_stop="95061"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96789" e_stop="95061"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="96789" e_stop="95061" e_length="1729"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96789" stop="96079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96213" stop="95576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96173" stop="95546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96173" stop="95598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96123" stop="95571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95958" stop="95196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95931" stop="95362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95627" stop="95230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95442" stop="95061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351886" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATAATGCAACAAGATGAAGATTTTGAGCCAAAATTTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATAGAAGAATGCAATTCAAGCTGAATTGGCTTCACTAGAAAAACGTGAAGTTTTTGGACCGATAATCCGAACACCTGAGGGTATCAAGCCAGTGGGGTACAAATGGATTTTTGTACGAAAAAGAAATGAGAAAGGTGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGACATTGATTATATGGAGACATATTCTCTAGTGGTAGATGCAATCACCTTCAGATATCTCATAAATCTGGCAGTTCATGAAAAACTTGAAATGCGTCTAATGGATGTTGTCACAGCCTATCTATATGGTTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTCAAAGTGCCTGAAGCATACAAAGATTCAAGAGAAACTTGTTCAATAAAGCTTCAGAAGTCTCTGTATGGATTGAAAAAATCAGGAAGGATGTGGTACAATCGTCTGAGTGAATATTTGTTAAAGAAAGGGTATAAAAATGACCCGATTTGTCCCTGCATTTTCATTAAACGGTCGGGGTCTGAATTTGTAATAATAGTTGTGTATGTTGATGATTTGAACATCATTGGCACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTTTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATACATTAAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAACTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATGTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAATAGGCTATTTGTTTACATGTGGAGACACAACAATATCTTGGCGATCAATGAAGCAAACATTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGAAAGTCGAGAGTGCGTCTGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGTTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAATAAAATGGTGAGATAGAATTTCAACAAATTCGTTCAAGTGATAATCTTAATGATTTATTCACTAAGGCATTGCCAACATCAACGTTTGAGAAATTGAGATACAAGATTGGAATGCGCCGTCTCCGAGATATCAAGTAAAGTTTTCATCAGGGGGAGCGAAATACGCGTTGTACTCTTTTCCTTAACTATGGTTTTGTCCCAAGTTGAGTTTTTCCTGGTAAGGTTTTTAAC</gDNA_template>
            <first_frame> K  *  C  N  K  M  K  I  L  S  Q  N  L  F  T  N  V  D  R  E  M  I  G  Q  N  R  R  M  Q  F  K  L  N  W  L  H  *  K  N  V  K  F  L  D  R  *  S  E  H  L  R  V  S  S  Q  W  G  T  N  G  F  L  Y  E  K  E  M  R  K  V  K  S  *  D  I  R  P  D  S  L  L  K  V  F  L  K  D  L  T  L  I  I  W  R  H  I  L  *  W  *  M  Q  S  P  S  D  I  S  *  I  W  Q  F  M  K  N  L  K  C  V  *  W  M  L  S  Q  P  I  Y  M  V  H  W  T  T  T  F  S  *  K  F  L  K  H  S  K  C  L  K  H  T  K  I  Q  E  K  L  V  Q  *  S  F  R  S  L  C  M  D  *  K  N  Q  E  G  C  G  T  I  V  *  V  N  I  C  *  R  K  G  I  K  M  T  R  F  V  P  A  F  S  L  N  G  R  G  L  N  L  *  *  *  L  C  M  L  M  I  *  T  S  L  A  L  V  K  S  F  *  K  L  L  S  V  *  K  K  N  L  K  *  K  I  S  A  R  Q  N  F  V  L  V  Y  R  L  R  I  F  Q  M  E  Y  L  F  I  N  Q  R  T  Q  K  R  Y  *  S  V  F  T  W  I  T  H  I  H  *  V  L  Q  W  W  *  D  R  L  T  S  I  Q  I  H  F  D  L  K  R  M  M  K  N  F  L  V  M  K  L  L  I  L  V  R  S  G  H  *  C  T  L  L  T  I  L  D  Q  I  S  V  L  Q  *  V  Y  W  Q  D  S  V  P  P  Q  Q  K  D  I  G  M  V  L  N  T  Y  F  D  M  F  E  G  P  W  T  W  V  Y  S  I  P  M  N  P  N  Q  N  *  L  V  T  Q  M  Q  G  I  Y  Q  I  R  I  K  L  D  H  K  *  A  I  C  L  H  V  E  T  Q  Q  Y  L  G  D  Q  *  S  K  H  W  *  P  L  L  Q  I  M  Q  K  *  *  P  S  M  K  K  V  E  S  A  S  V  E  I  N  D  P  S  Y  S  G  N  V  W  F  F  F  E  K  E  Y  T  N  H  N  V  R  R  *  C  C  M  Y  S  S  I  E  R  R  I  H  Q  R  R  P  D  K  A  Y  L  T  K  V  L  F  H  A  *  S  S  I  K  W  *  D  R  I  S  T  N  S  F  K  *  *  S  *  *  F  I  H  *  G  I  A  N  I  N  V  *  E  I  E  I  Q  D  W  N  A  P  S  P  R  Y  Q  V  K  F  S  S  G  G  A  K  Y  A  L  Y  S  F  P  *  L  W  F  C  P  K  L  S  F  S  W  *  G  F  *  </first_frame>
            <second_frame>  N  N  A  T  R  *  R  F  *  A  K  I  C  S  R  M  *  T  E  K  *  L  A  K  I  E  E  C  N  S  S  *  I  G  F  T  R  K  T  *  S  F  W  T  D  N  P  N  T  *  G  Y  Q  A  S  G  V  Q  M  D  F  C  T  K  K  K  *  E  R  *  S  H  E  I  *  G  P  T  R  C  S  R  F  F  S  K  T  *  H  *  L  Y  G  D  I  F  S  S  G  R  C  N  H  L  Q  I  S  H  K  S  G  S  S  *  K  T  *  N  A  S  N  G  C  C  H  S  L  S  I  W  F  I  G  P  Q  H  F  H  E  N  S  *  S  I  Q  S  A  *  S  I  Q  R  F  K  R  N  L  F  N  K  A  S  E  V  S  V  W  I  E  K  I  R  K  D  V  V  Q  S  S  E  *  I  F  V  K  E  R  V  *  K  *  P  D  L  S  L  H  F  H  *  T  V  G  V  *  I  C  N  N  S  C  V  C  *  *  F  E  H  H  W  H  S  *  R  A  F  R  S  C  *  V  S  E  K  R  I  *  N  E  R  S  R  Q  D  K  I  L  S  W  S  T  D  *  E  F  F  K  W  N  T  C  S  S  I  N  V  H  R  K  D  T  K  A  F  L  H  G  *  L  T  Y  I  K  Y  S  N  G  G  K  I  A  *  H  Q  Y  R  S  I  S  T  S  R  E  *  *  R  T  S  W  *  *  N  S  L  S  *  C  D  R  G  T  N  V  P  C  *  Q  Y  S  T  R  Y  L  F  C  S  K  S  T  G  K  I  Q  F  L  P  N  K  K  T  L  E  W  C  *  T  H  T  S  I  C  S  R  D  H  G  H  G  F  I  L  F  Q  *  I  Q  I  R  T  D  W  L  R  R  C  R  V  F  I  R  S  A  *  S  S  I  T  N  R  L  F  V  Y  M  W  R  H  N  N  I  L  A  I  N  E  A  N  I  G  S  H  F  F  K  S  C  R  N  N  S  H  P  *  R  K  S  R  V  R  L  L  R  S  M  T  H  H  I  Q  E  M  C  G  F  S  L  K  K  N  I  P  T  T  M  Y  E  D  N  A  A  C  I  V  Q  L  K  G  G  Y  I  K  G  D  R  T  K  H  I  S  P  K  F  F  F  T  H  D  L  Q  *  N  G  E  I  E  F  Q  Q  I  R  S  S  D  N  L  N  D  L  F  T  K  A  L  P  T  S  T  F  E  K  L  R  Y  K  I  G  M  R  R  L  R  D  I  K  *  S  F  H  Q  G  E  R  N  T  R  C  T  L  F  L  N  Y  G  F  V  P  S  *  V  F  P  G  K  V  F  N </second_frame>
            <third_frame>   I  M  Q  Q  D  E  D  F  E  P  K  F  V  H  E  C  R  Q  R  N  D  W  P  K  *  K  N  A  I  Q  A  E  L  A  S  L  E  K  R  E  V  F  G  P  I  I  R  T  P  E  G  I  K  P  V  G  Y  K  W  I  F  V  R  K  R  N  E  K  G  E  V  M  R  Y  K  A  R  L  V  A  Q  G  F  S  Q  R  P  D  I  D  Y  M  E  T  Y  S  L  V  V  D  A  I  T  F  R  Y  L  I  N  L  A  V  H  E  K  L  E  M  R  L  M  D  V  V  T  A  Y  L  Y  G  S  L  D  H  N  I  F  M  K  I  P  E  A  F  K  V  P  E  A  Y  K  D  S  R  E  T  C  S  I  K  L  Q  K  S  L  Y  G  L  K  K  S  G  R  M  W  Y  N  R  L  S  E  Y  L  L  K  K  G  Y  K  N  D  P  I  C  P  C  I  F  I  K  R  S  G  S  E  F  V  I  I  V  V  Y  V  D  D  L  N  I  I  G  T  R  K  E  L  L  E  A  V  E  C  L  K  K  E  F  E  M  K  D  L  G  K  T  K  F  C  L  G  L  Q  I  E  N  F  S  N  G  I  L  V  H  Q  S  T  Y  T  E  K  I  L  K  R  F  Y  M  D  N  S  H  T  L  S  T  P  M  V  V  R  S  L  D  I  N  T  D  P  F  R  P  Q  E  N  D  E  E  L  L  G  D  E  T  P  Y  L  S  A  I  G  A  L  M  Y  L  A  N  N  T  R  P  D  I  C  F  A  V  S  L  L  A  R  F  S  S  S  P  T  K  R  H  W  N  G  V  K  H  I  L  R  Y  V  R  G  T  M  D  M  G  L  F  Y  S  N  E  S  K  S  E  L  I  G  Y  A  D  A  G  Y  L  S  D  P  H  K  A  R  S  Q  I  G  Y  L  F  T  C  G  D  T  T  I  S  W  R  S  M  K  Q  T  L  V  A  T  S  S  N  H  A  E  I  I  A  I  H  E  E  S  R  E  C  V  C  *  D  Q  *  P  I  I  F  R  K  C  V  V  F  L  *  K  R  I  Y  Q  P  Q  C  T  K  I  M  L  H  V  *  F  N  *  K  E  D  T  S  K  E  T  G  Q  S  I  S  H  Q  S  S  F  S  R  M  I  F  N  K  M  V  R  *  N  F  N  K  F  V  Q  V  I  I  L  M  I  Y  S  L  R  H  C  Q  H  Q  R  L  R  N  *  D  T  R  L  E  C  A  V  S  E  I  S  S  K  V  F  I  R  G  S  E  I  R  V  V  L  F  S  L  T  M  V  L  S  Q  V  E  F  F  L  V  R  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96712" stop="95465"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1245</number_coding_nucleotides>
                  <number_encoded_amino_acids>415</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNAIQAELASLEKREVFGPIIRTPEGIKPVGYKWIFVRKRNEKGEVMRYKARLVAQGFSQRPDIDYMETYSLVVDAITFRYLINLAVHEKLEMRLMDVVTAYLYGSLDHNIFMKIPEAFKVPEAYKDSRETCSIKLQKSLYGLKKSGRMWYNRLSEYLLKKGYKNDPICPCIFIKRSGSEFVIIVVYVDDLNIIGTRKELLEAVECLKKEFEMKDLGKTKFCLGLQIENFSNGILVHQSTYTEKILKRFYMDNSHTLSTPMVVRSLDINTDPFRPQENDEELLGDETPYLSAIGALMYLANNTRPDICFAVSLLARFSSSPTKRHWNGVKHILRYVRGTMDMGLFYSNESKSELIGYADAGYLSDPHKARSQIGYLFTCGDTTISWRSMKQTLVATSSNHAEIIAIHEESRECVC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95489" stop="95289"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKSRVRLLRSMTHHIQEMCGFSLKKNIPTTMYEDNAACIVQLKGGYIKGDRTKHISPKFFFTHDLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="98532" PGL_stop="98165"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98532" e_stop="98165"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="98532" e_stop="98165" e_length="368"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98532" stop="98165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTAGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCACAGTAAACAAAAGGTTTACTAATTTTAATGTTTTATCATTTGGCATG</gDNA_template>
            <first_frame> L  *  K  W  H  M  S  T  Q  Y  Q  V  V  Q  N  *  L  R  A  L  E  E  R  P  Y  Y  Y  L  E  G  Q  Y  *  A  L  I  M  H  Y  I  V  V  S  L  K  E  T  Y  *  V  S  K  L  F  A  K  M  A  I  M  L  R  R  L  M  K  E  R  L  N  T  F  T  L  L  Q  L  M  *  R  R  K  L  C  M  K  N  Y  L  H  F  L  L  G  C  T  I  Q  V  *  V  Q  L  N  H  M  P  Q  *  T  K  G  L  L  I  L  M  F  Y  H  L  A   </first_frame>
            <second_frame>  Y  E  N  G  I  C  Q  H  N  I  R  *  Y  K  I  N  *  G  L  W  K  S  D  L  I  T  T  W  R  D  N  I  K  H  *  *  C  I  I  L  *  *  V  S  K  K  L  I  K  F  Q  S  Y  S  P  K  W  L  S  C  *  D  G  *  *  R  K  G  *  I  P  L  H  Y  Y  N  *  C  R  E  E  N  C  A  *  K  I  T  C  I  F  F  W  V  V  L  Y  K  Y  K  Y  S  *  I  T  C  H  S  K  Q  K  V  Y  *  F  *  C  F  I  I  W  H  </second_frame>
            <third_frame>   M  K  M  A  Y  V  N  T  I  S  G  S  T  K  L  I  E  G  S  G  R  A  T  L  L  L  P  G  G  T  I  L  S  I  D  N  A  L  Y  C  S  K  S  Q  R  N  L  L  S  F  K  V  I  R  Q  N  G  Y  H  V  E  T  A  N  E  G  K  V  E  Y  L  Y  I  T  T  I  N  V  E  K  K  I  V  H  E  K  L  P  A  F  S  S  G  L  Y  Y  T  S  I  S  T  V  E  S  H  A  T  V  N  K  R  F  T  N  F  N  V  L  S  F  G  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98530" stop="98165"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKMAYVNTISGSTKLIEGSGRATLLLPGGTILSIDNALYCSKSQRNLLSFKVIRQNGYHVETANEGKVEYLYITTINVEKKIVHEKLPAFSSGLYYTSISTVESHATVNKRFTNFNVLSFGM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="101808" PGL_stop="100228"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101808" e_stop="101746"/>
            <exon e_start="100811" e_stop="100228"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.183" acc_prob="0.000" e_score="0.825"/>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.825">
            <gDNA_exon_boundary e_start="101808" e_stop="101746" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.183" acc_prob="0.000">
            <gDNA_intron_boundary i_start="101745" i_stop="100812" i_length="934"/>
          </intron>
          <exon e_serial="2" e_score="0.921">
            <gDNA_exon_boundary e_start="100811" e_stop="100228" e_length="584"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101808" stop="101746"/>
              <exon start="100811" stop="100228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276288" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATAAAAAAAATTAAGTAAGATAATTATAAAAACAATATTGGCAGAAAAATAAAAAAAAATAT : TTAAAATGAAATAAAATATGAATAGTTTAAAATACTAATAATATTAAATACATGTTCATCAATTAGATTATCTAGTACATCCCTAATCACACCGATTACAGTTCGTGCCTCATTTGATGATTTCTACGTCGCGTCCATTTACGTGCAAGCGCAGTTGAAGCCTCAAGTTGATTGATCCTTAGAGGCTTTTGGCAATGGTTGCAGGGGAATAATTCTTTCCCATGCCCAAATCTACAATAAATAAATTCACCATTACTTATAATGCACTTAAATTTAGATTACTAGTATATAAAAAATATTTAATTAAAAAATATGTATACCTGCACTAAAGAGAGAAATCCACAAACTTCATTTGATTTTTTCATTGATGCACGACATAAACAATTATACAAATATGATAATGTGGCTGCTCCCCATGCTTGAGTTGACATTAAATCTAAATTTCTCATGTCAATCAAAATGTCCAAATTAATCTTATTATTAGATTTATCCGAAAATATTGATCCATCACATAACCATAATAAATATAATCTAAATCTTTGTTGCACTTCATGCTTAGTTGAGTGATCATTAATACCATCCAA</gDNA_template>
            <first_frame> Y  K  K  N  *  V  R  *  L  *  K  Q  Y  W  Q  K  N  K  K  K  Y  :  L  K  *  N  K  I  *  I  V  *  N  T  N  N  I  K  Y  M  F  I  N  *  I  I  *  Y  I  P  N  H  T  D  Y  S  S  C  L  I  *  *  F  L  R  R  V  H  L  R  A  S  A  V  E  A  S  S  *  L  I  L  R  G  F  W  Q  W  L  Q  G  N  N  S  F  P  C  P  N  L  Q  *  I  N  S  P  L  L  I  M  H  L  N  L  D  Y  *  Y  I  K  N  I  *  L  K  N  M  Y  T  C  T  K  E  R  N  P  Q  T  S  F  D  F  F  I  D  A  R  H  K  Q  L  Y  K  Y  D  N  V  A  A  P  H  A  *  V  D  I  K  S  K  F  L  M  S  I  K  M  S  K  L  I  L  L  L  D  L  S  E  N  I  D  P  S  H  N  H  N  K  Y  N  L  N  L  C  C  T  S  C  L  V  E  *  S  L  I  P  S   </first_frame>
            <second_frame>  I  K  K  I  K  *  D  N  Y  K  N  N  I  G  R  K  I  K  K  N  I :   *  N  E  I  K  Y  E  *  F  K  I  L  I  I  L  N  T  C  S  S  I  R  L  S  S  T  S  L  I  T  P  I  T  V  R  A  S  F  D  D  F  Y  V  A  S  I  Y  V  Q  A  Q  L  K  P  Q  V  D  *  S  L  E  A  F  G  N  G  C  R  G  I  I  L  S  H  A  Q  I  Y  N  K  *  I  H  H  Y  L  *  C  T  *  I  *  I  T  S  I  *  K  I  F  N  *  K  I  C  I  P  A  L  K  R  E  I  H  K  L  H  L  I  F  S  L  M  H  D  I  N  N  Y  T  N  M  I  M  W  L  L  P  M  L  E  L  T  L  N  L  N  F  S  C  Q  S  K  C  P  N  *  S  Y  Y  *  I  Y  P  K  I  L  I  H  H  I  T  I  I  N  I  I  *  I  F  V  A  L  H  A  *  L  S  D  H  *  Y  H  P  </second_frame>
            <third_frame>   *  K  K  L  S  K  I  I  I  K  T  I  L  A  E  K  *  K  K  I   : F  K  M  K  *  N  M  N  S  L  K  Y  *  *  Y  *  I  H  V  H  Q  L  D  Y  L  V  H  P  *  S  H  R  L  Q  F  V  P  H  L  M  I  S  T  S  R  P  F  T  C  K  R  S  *  S  L  K  L  I  D  P  *  R  L  L  A  M  V  A  G  E  *  F  F  P  M  P  K  S  T  I  N  K  F  T  I  T  Y  N  A  L  K  F  R  L  L  V  Y  K  K  Y  L  I  K  K  Y  V  Y  L  H  *  R  E  K  S  T  N  F  I  *  F  F  H  *  C  T  T  *  T  I  I  Q  I  *  *  C  G  C  S  P  C  L  S  *  H  *  I  *  I  S  H  V  N  Q  N  V  Q  I  N  L  I  I  R  F  I  R  K  Y  *  S  I  T  *  P  *  *  I  *  S  K  S  L  L  H  F  M  L  S  *  V  I  I  N  T  I  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0249E07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="101255" e_stop="100798"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="101255" e_stop="100798" e_length="458"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101255" stop="100798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAATTTTTTCTTCAAATACAAAATTAAATTACAATACACAGAAAAAAATATTTTAATTTTTTTTCTTTAAACTAAGGAATGAAAGAAAAAAATAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACTTTGAACTTTGATAGAAGAATCATATATACCCCTAAATAATTTTTTATAAATATTAGAAGTAATATATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGTCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATACGAGCCACTTTAATAACGAGGGGTATATCAGCTCTAAATGACAAAGTTGAGGGGTATATCAAACCCTTTTCCCTTTTATTTAAAATGAAATAA</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  L  Q  I  Q  N  *  I  T  I  H  R  K  K  Y  F  N  F  F  S  L  N  *  G  M  K  E  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  T  P  K  *  F  F  I  N  I  R  S  N  I  Y  K  F  K  T  N  F  L  T  S  V  K  *  R  V  Y  V  S  H  F  V  T  A  G  V  Y  V  S  R  L  Y  N  G  K  G  I  Y  E  P  L  *  *  R  G  V  Y  Q  L  *  M  T  K  L  R  G  I  S  N  P  F  P  F  Y  L  K  *  N   </first_frame>
            <second_frame>  Y  C  R  *  P  N  F  F  F  K  Y  K  I  K  L  Q  Y  T  E  K  N  I  L  I  F  F  L  *  T  K  E  *  K  K  K  I  K  *  E  *  E  I  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  L  *  T  L  I  E  E  S  Y  I  P  L  N  N  F  L  *  I  L  E  V  I  Y  I  N  L  K  L  I  F  *  L  P  L  N  E  G  Y  M  *  V  I  L  *  R  Q  G  Y  M  *  A  V  C  I  T  V  R  A  Y  T  S  H  F  N  N  E  G  Y  I  S  S  K  *  Q  S  *  G  V  Y  Q  T  L  F  P  F  I  *  N  E  I  </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  S  S  N  T  K  L  N  Y  N  T  Q  K  K  I  F  *  F  F  F  F  K  L  R  N  E  R  K  K  *  N  K  N  K  K  F  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  F  E  L  *  *  K  N  H  I  Y  P  *  I  I  F  Y  K  Y  *  K  *  Y  I  *  I  *  N  *  F  F  N  F  R  *  M  K  G  I  C  E  S  F  C  N  G  R  G  I  C  E  P  F  V  *  R  *  G  H  I  R  A  T  L  I  T  R  G  I  S  A  L  N  D  K  V  E  G  Y  I  K  P  F  S  L  L  F  K  M  K  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0249E07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="100233" PGL_stop="100815"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100233" e_stop="100815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="100233" e_stop="100815" e_length="583"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100233" stop="100815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276340" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGTATTAATGATCACTCAACTAAGCATGAAGTGCAACAAAGATTTAGATTATATTTATTATGGTTATGTGATGGATCAATATTTTCGGATAAATCTAATAATAAGATTAATTTGGACATTTTGATTGACATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGAGCAGCCACATTATCATATTTGTATAATTGTTTATGTCGTGCATCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAGGTATACATATTTTTTAATTAAATATTTTTTATATACTAGTAATCTAAATTTAAGTGCATTATAAGTAATGGTGAATTTATTTATTGTAGATTTGGGCATGGGAAAGAATTATTCCCCTGCAACCATTGCCAAAAGCCTCTAAGGATCAATCAACTTGAGGCTTCAACTGCGCTTGCACGTAAATGGACGCGACGTAGAAATCATCAAATGAGGCACGAACTGTAATCGGTGTGATTAGGGATGTACTAGATAATCTAATTGATGAACATGTATTTAATATTATTAGTATTTTAAACTATTCATATTTTATTTCATTTTAAATAA</gDNA_template>
            <first_frame> W  Y  *  *  S  L  N  *  A  *  S  A  T  K  I  *  I  I  F  I  M  V  M  *  W  I  N  I  F  G  *  I  *  *  *  D  *  F  G  H  F  D  *  H  E  K  F  R  F  N  V  N  S  S  M  G  S  S  H  I  I  I  F  V  *  L  F  M  S  C  I  N  E  K  I  K  *  S  L  W  I  S  L  F  S  A  G  I  H  I  F  *  L  N  I  F  Y  I  L  V  I  *  I  *  V  H  Y  K  *  W  *  I  Y  L  L  *  I  W  A  W  E  R  I  I  P  L  Q  P  L  P  K  A  S  K  D  Q  S  T  *  G  F  N  C  A  C  T  *  M  D  A  T  *  K  S  S  N  E  A  R  T  V  I  G  V  I  R  D  V  L  D  N  L  I  D  E  H  V  F  N  I  I  S  I  L  N  Y  S  Y  F  I  S  F  *  I  </first_frame>
            <second_frame>  G  I  N  D  H  S  T  K  H  E  V  Q  Q  R  F  R  L  Y  L  L  W  L  C  D  G  S  I  F  S  D  K  S  N  N  K  I  N  L  D  I  L  I  D  M  R  N  L  D  L  M  S  T  Q  A  W  G  A  A  T  L  S  Y  L  Y  N  C  L  C  R  A  S  M  K  K  S  N  E  V  C  G  F  L  S  L  V  Q  V  Y  I  F  F  N  *  I  F  F  I  Y  *  *  S  K  F  K  C  I  I  S  N  G  E  F  I  Y  C  R  F  G  H  G  K  E  L  F  P  C  N  H  C  Q  K  P  L  R  I  N  Q  L  E  A  S  T  A  L  A  R  K  W  T  R  R  R  N  H  Q  M  R  H  E  L  *  S  V  *  L  G  M  Y  *  I  I  *  L  M  N  M  Y  L  I  L  L  V  F  *  T  I  H  I  L  F  H  F  K  * </second_frame>
            <third_frame>   V  L  M  I  T  Q  L  S  M  K  C  N  K  D  L  D  Y  I  Y  Y  G  Y  V  M  D  Q  Y  F  R  I  N  L  I  I  R  L  I  W  T  F  *  L  T  *  E  I  *  I  *  C  Q  L  K  H  G  E  Q  P  H  Y  H  I  C  I  I  V  Y  V  V  H  Q  *  K  N  Q  M  K  F  V  D  F  S  L  *  C  R  Y  T  Y  F  L  I  K  Y  F  L  Y  T  S  N  L  N  L  S  A  L  *  V  M  V  N  L  F  I  V  D  L  G  M  G  K  N  Y  S  P  A  T  I  A  K  S  L  *  G  S  I  N  L  R  L  Q  L  R  L  H  V  N  G  R  D  V  E  I  I  K  *  G  T  N  C  N  R  C  D  *  G  C  T  R  *  S  N  *  *  T  C  I  *  Y  Y  *  Y  F  K  L  F  I  F  Y  F  I  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100234" stop="100512"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GINDHSTKHEVQQRFRLYLLWLCDGSIFSDKSNNKINLDILIDMRNLDLMSTQAWGAATLSYLYNCLCRASMKKSNEVCGFLSLVQVYIFFN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="100238" e_stop="100491"/>
            <exon e_start="100581" e_stop="100616"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.992" e_score="0.957"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="100238" e_stop="100491" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.992">
            <gDNA_intron_boundary i_start="100492" i_stop="100580" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100581" e_stop="100616" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100238" stop="100491"/>
              <exon start="100581" stop="100616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276550" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAATGATCACTCAACTAAGCATGAAGTGCAACAAAGATTTAGATTATATTTATTATGGTTATGTGATGGATCAATATTTTCGGATAAATCTAATAATAAGATTAATTTGGACATTTTGATTGACATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGAGCAGCCACATTATCATATTTGTATAATTGTTTATGTCGTGCATCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAG : ATTTGGGCATGGGAAAGAATTATTCCCCTGCAACCA</gDNA_template>
            <first_frame> L  M  I  T  Q  L  S  M  K  C  N  K  D  L  D  Y  I  Y  Y  G  Y  V  M  D  Q  Y  F  R  I  N  L  I  I  R  L  I  W  T  F  *  L  T  *  E  I  *  I  *  C  Q  L  K  H  G  E  Q  P  H  Y  H  I  C  I  I  V  Y  V  V  H  Q  *  K  N  Q  M  K  F  V  D  F  S  L  *  C  R :   F  G  H  G  K  E  L  F  P  C  N   </first_frame>
            <second_frame>  *  *  S  L  N  *  A  *  S  A  T  K  I  *  I  I  F  I  M  V  M  *  W  I  N  I  F  G  *  I  *  *  *  D  *  F  G  H  F  D  *  H  E  K  F  R  F  N  V  N  S  S  M  G  S  S  H  I  I  I  F  V  *  L  F  M  S  C  I  N  E  K  I  K  *  S  L  W  I  S  L  F  S  A   : D  L  G  M  G  K  N  Y  S  P  A  T  </second_frame>
            <third_frame>   N  D  H  S  T  K  H  E  V  Q  Q  R  F  R  L  Y  L  L  W  L  C  D  G  S  I  F  S  D  K  S  N  N  K  I  N  L  D  I  L  I  D  M  R  N  L  D  L  M  S  T  Q  A  W  G  A  A  T  L  S  Y  L  Y  N  C  L  C  R  A  S  M  K  K  S  N  E  V  C  G  F  L  S  L  V  Q  :  I  W  A  W  E  R  I  I  P  L  Q  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100240" stop="100491"/>
                    <exon start="100581" stop="100616"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NDHSTKHEVQQRFRLYLLWLCDGSIFSDKSNNKINLDILIDMRNLDLMSTQAWGAATLSYLYNCLCRASMKKSNEVCGFLSLVQIWAWERIIPLQP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="102342" PGL_stop="102678"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102342" e_stop="102678"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="102342" e_stop="102678" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102342" stop="102678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCGAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCCCAATACCATACTCATTTGGGAATCATGTTCGTTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTAATTCTCTTGTGTCGGTACGTGACACTCCGATCCCTCATATTCATTATTCCTCTTGTGTCTGTACGTGACACTCCGATCCCCTAAATCTACGTGTCAGTTCGTGACACCCGATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  E  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  S  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  S  P  N  T  I  L  I  W  E  S  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  N  S  L  V  S  V  R  D  T  P  I  P  H  I  H  Y  S  S  C  V  C  T  *  H  S  D  P  L  N  L  R  V  S  S  *  H  P  I  </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  A  L  Y  H  *  Q  L  P  S  S  S  H  M  R  T  Q  A  P  I  P  Y  S  F  G  N  H  V  R  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  I  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  I  P  L  V  S  V  R  D  T  P  I  P  *  I  Y  V  S  V  R  D  T  R  S </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  R  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  H  Y  I  I  N  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  V  R  L  S  I  L  T  S  F  K  I  H  Y  L  *  F  S  C  V  G  T  *  H  S  D  P  S  Y  S  L  F  L  L  C  L  Y  V  T  L  R  S  P  K  S  T  C  Q  F  V  T  P  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0249E07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="103338" PGL_stop="102675"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103338" e_stop="103022"/>
            <exon e_start="102971" e_stop="102675"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.521" e_score="0.912"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="103338" e_stop="103022" e_length="317"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.521">
            <gDNA_intron_boundary i_start="103021" i_stop="102972" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.926">
            <gDNA_exon_boundary e_start="102971" e_stop="102675" e_length="297"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103338" stop="103022"/>
              <exon start="102971" stop="102675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347579" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAAAGAAAATAGAAAGAACAAGAGAGAGAGGGAGAATCGAACGAGAAGGGAGAAACAAAGCTTGGAGAAAAATTTGCTTGCTTGATCACTAATCTTCGGTGGAGGTAGGTTATGGTTGTTTCATGCTTTCATGAGTAAACTCTTAATAGTGATTGATATGTATTGGTAGTATTGTAAACCCTACTATATGCTTAATGGTATGTTGCATGAATATGATTATGTGATTGTGATAAAATAAGCATGATGAAAATATTGAATCCCAAATCTTGAAAAGAAACTTTAATATACATTATTAATGATGATGCCTTGGTATAG : AAGAAGGCTTGATGAATTAAAGTAATGGGATTGATGATGCCTTGGTATAGAGAAGGCTTGATGGTTTACAGAATGATATTAGTGGATCGGGTGTCACGAACCGGCACGTAGAATTAAGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGAGTGTCATGAACCGACTCGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGAT</gDNA_template>
            <first_frame> N  K  E  N  R  K  N  K  R  E  R  E  N  R  T  R  R  E  K  Q  S  L  E  K  N  L  L  A  *  S  L  I  F  G  G  G  R  L  W  L  F  H  A  F  M  S  K  L  L  I  V  I  D  M  Y  W  *  Y  C  K  P  Y  Y  M  L  N  G  M  L  H  E  Y  D  Y  V  I  V  I  K  *  A  *  *  K  Y  *  I  P  N  L  E  K  K  L  *  Y  T  L  L  M  M  M  P  W  Y  R :   R  R  L  D  E  L  K  *  W  D  *  *  C  L  G  I  E  K  A  *  W  F  T  E  *  Y  *  W  I  G  C  H  E  P  A  R  R  I  K  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  S  V  M  N  R  L  V  E  L  G  D  R  V  S  R  T  D  T  *  N  *  G   </first_frame>
            <second_frame>  I  K  K  I  E  R  T  R  E  R  G  R  I  E  R  E  G  R  N  K  A  W  R  K  I  C  L  L  D  H  *  S  S  V  E  V  G  Y  G  C  F  M  L  S  *  V  N  S  *  *  *  L  I  C  I  G  S  I  V  N  P  T  I  C  L  M  V  C  C  M  N  M  I  M  *  L  *  *  N  K  H  D  E  N  I  E  S  Q  I  L  K  R  N  F  N  I  H  Y  *  *  *  C  L  G  I   : E  E  G  L  M  N  *  S  N  G  I  D  D  A  L  V  *  R  R  L  D  G  L  Q  N  D  I  S  G  S  G  V  T  N  R  H  V  E  L  R  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  *  T  D  S  *  N  *  G  I  G  C  H  E  P  T  R  R  I  R  G  </second_frame>
            <third_frame>   *  R  K  *  K  E  Q  E  R  E  G  E  S  N  E  K  G  E  T  K  L  G  E  K  F  A  C  L  I  T  N  L  R  W  R  *  V  M  V  V  S  C  F  H  E  *  T  L  N  S  D  *  Y  V  L  V  V  L  *  T  L  L  Y  A  *  W  Y  V  A  *  I  *  L  C  D  C  D  K  I  S  M  M  K  I  L  N  P  K  S  *  K  E  T  L  I  Y  I  I  N  D  D  A  L  V  *  :  K  K  A  *  *  I  K  V  M  G  L  M  M  P  W  Y  R  E  G  L  M  V  Y  R  M  I  L  V  D  R  V  S  R  T  G  T  *  N  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  E  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0249E07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="+" PGL_start="104509" PGL_stop="104685"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104509" e_stop="104685"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="104509" e_stop="104685" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104509" stop="104685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  G  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  D  H  Q  T  L  S  H  T  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  G  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  T  T  K  L  Y  H  T  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0249E07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="27" PGL_strand="+" PGL_start="105989" PGL_stop="108699"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105989" e_stop="108699"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="105989" e_stop="108699" e_length="2711"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105989" stop="106701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105989" stop="106584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105989" stop="106514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106060" stop="106739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106060" stop="106418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106509" stop="107167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106578" stop="107339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106578" stop="107238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107188" stop="107746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107192" stop="107955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107272" stop="108061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107274" stop="107807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107348" stop="108045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107909" stop="108628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107912" stop="108575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108267" stop="108699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACGAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGGTACTTGTTCTTAATAGTTACTTTATTCAGTTGTCTGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTTTAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATATAGAAGTCAATATCCCTATCCGATGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACGTCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCAGCGGAGTAGAGACACGGATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACAAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCATTGCCCCTACCATGCTGTGATGTAGTGGCTCCAGTTTGCCCATTACCTCTGTCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGTCTCTACCATGACCACCTCTACCTCTAGTTATTGGGGGTCTGTAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCTTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGACTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTAGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCAAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGATGGTGCCTCTATTGGTTGACACTCGACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCTGGAGCCTGAGGTGCTGGTGCAGAGAACACTAGGGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTCTGCACTCGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCTCTGCCCTAGTATCAGATGGGCTAGGTGCTTGTCCTCTCCCTCTAGAGGACGTCCTCCCACGACCTCTTCCACGGCCCCTTGCCGCTGTTCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  G  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  R  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  G  H  H  Y  E  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  I  I  N  A  G  K  R  V  L  V  L  N  S  Y  F  I  Q  L  S  V  V  Y  A  H  P  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  V  Q  *  L  L  K  L  C  F  *  L  S  *  L  R  G  S  H  S  L  R  G  Y  R  N  G  A  S  T  G  F  K  I  N  I  E  V  N  I  P  I  R  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  N  Y  *  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  A  D  R  I  G  S  V  V  T  L  P  H  *  R  V  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  C  K  L  R  R  K  P  S  H  T  Q  N  H  V  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  Y  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  Q  R  S  R  D  T  D  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  R  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  K  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  R  L  S  I  A  P  T  M  L  *  C  S  G  S  S  L  P  I  T  S  V  V  L  V  T  T  I  T  S  T  T  T  P  S  R  K  T  V  S  T  M  T  T  S  T  S  S  Y  W  G  S  V  T  W  S  G  T  I  S  P  N  M  S  N  L  P  T  S  I  T  F  F  G  V  D  H  M  P  L  G  E  V  L  T  G  L  R  W  S  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  S  S  V  R  T  I  K  L  T  S  L  S  K  T  F  *  C  R  C  C  G  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  L  L  E  G  F  C  R  S  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  A  N  P  L  L  R  T  E  T  E  L  S  G  I  S  G  *  C  T  K  L  S  L  I  S  I  N  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  T  R  E  *  G  P  S  H  R  W  C  L  Y  W  L  T  L  D  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  P  F  Y  Y  T  H  L  V  *  *  L  V  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  M  L  Y  L  W  S  L  R  C  W  C  R  E  H  *  G  C  L  A  L  I  R  Q  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  H  F  L  I  L  H  S  F  S  F  P  I  L  P  F  S  Y  Y  L  L  S  R  W  R  S  L  C  P  S  I  R  W  A  R  C  L  S  S  P  S  R  G  R  P  P  T  T  S  S  T  A  P  C  R  C  S   </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  L  I  V  T  L  F  S  C  L  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  *  K  S  I  S  L  S  D  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  I  I  F  L  A  R  R  K  E  T  M  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  S  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  L  P  L  S  F  W  *  P  L  L  P  R  P  P  R  P  P  E  K  R  S  L  P  *  P  P  L  P  L  V  I  G  G  L  *  L  G  L  G  Q  F  L  L  I  C  P  I  S  P  H  P  *  H  S  L  E  S  I  I  C  P  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  L  P  E  P  C  P  L  V  *  E  P  L  N  S  P  P  F  R  R  L  F  D  V  D  V  V  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  Q  I  R  S  *  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  *  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  D  G  A  S  I  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  G  T  S  M  R  G  A  I  V  A  A  C  C  T  S  G  A  *  G  A  G  A  E  N  T  R  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  I  S  S  F  C  T  R  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  S  A  L  V  S  D  G  L  G  A  C  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  V  L  </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  W  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  P  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  R  T  S  L  R  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  N  H  Q  C  G  E  E  G  T  C  S  *  *  L  L  Y  S  V  V  C  S  L  C  T  S  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  L  L  T  L  L  T  P  R  E  P  F  F  K  G  V  *  K  W  G  E  Y  R  V  Q  D  Q  Y  R  S  Q  Y  P  Y  P  M  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  E  L  L  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  S  F  S  *  H  E  E  R  R  R  C  G  P  D  W  K  C  S  H  P  P  T  L  T  G  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  L  Q  I  A  E  K  A  K  S  Y  P  E  S  R  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  L  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  A  E  *  R  H  G  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  T  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  Q  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  S  S  V  H  C  P  Y  H  A  V  M  *  W  L  Q  F  A  H  Y  L  C  R  F  G  D  H  Y  Y  L  D  H  H  A  L  Q  K  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  C  N  L  V  W  D  N  F  S  *  Y  V  Q  S  P  H  I  H  N  I  L  W  S  R  S  Y  A  P  R  R  S  V  D  R  S  E  V  V  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  F  P  N  L  V  L  *  C  K  N  H  *  T  H  L  P  F  E  D  F  L  M  S  M  L  W  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  P  L  G  R  I  L  P  *  P  L  S  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  G  K  S  A  L  E  D  *  N  R  V  E  W  H  I  W  I  V  H  E  T  *  P  H  K  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  T  N  *  R  M  R  P  K  S  *  M  V  P  L  L  V  D  T  R  H  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  Q  T  V  L  L  Y  P  S  C  V  V  A  R  D  S  Q  P  E  N  H  K  H  P  P  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  F  P  M  E  H  P  C  G  E  P  *  *  P  H  V  V  P  L  E  P  E  V  L  V  Q  R  T  L  G  V  S  G  P  D  Q  T  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  F  P  H  S  A  L  V  Q  F  P  H  P  P  L  L  L  L  P  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  V  L  V  L  S  L  *  R  T  S  S  H  D  L  F  H  G  P  L  P  L  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107420" stop="107674"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITSVVLVTTITSTTTPSRKTVSTMTTSTSSYWGSVTWSGTISPNMSNLPTSITFFGVDHMPLGEVLTGLRWSPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108452" stop="108697"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCLALIRQPAKISQNLIDHLWGRLGWHFLILHSFSFPILPFSYYLLSRWRSLCPSIRWARCLSSPSRGRPPTTSSTAPCRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106253" stop="106492"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNPVHQAHERSRGIRKTKGHHYEFVMPIPRSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108221" stop="108451"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVTVNQKIISILRFSTLEDWRFQFQELTEKFMLIICHYRPSSQTWKRAYFQWNIHAGSHSSRMLYLWSLRCWCREH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106761" stop="106961"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSISLSDGIPGRSAGNTSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLLIIFLARRKETMRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108501" stop="108698"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISGVGWGGISSFCTRSVSPSSPSLITSSVGGGVSALVSDGLGACPLPLEDVLPRPLPRPLAAVL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="7"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106185" stop="106382"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKIPFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="8"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107730" stop="107924"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLNSPPFRRLFDVDVVVKSSGFTPSTSITKSTTSWKDFAVAAICKAEIRNSDLNPFTNRQIRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="28" PGL_strand="-" PGL_start="108005" PGL_stop="106561"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108005" e_stop="107833"/>
            <exon e_start="107088" e_stop="106561"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.084" e_score="0.913"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="108005" e_stop="107833" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.084">
            <gDNA_intron_boundary i_start="107832" i_stop="107089" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.919">
            <gDNA_exon_boundary e_start="107088" e_stop="106561" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108005" stop="107833"/>
              <exon start="107088" stop="106561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="28" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCGGATTTGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCTACGGCAAAATCCTTCCAAG : AAATGGATGATTTTGACGTGATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTCCGCATCGTCTCCTTTCTTCGTGCTAAGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCATCGGATAGGGATATTGACTTCTATATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTAAAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  *  C  L  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  Q  S  S  R  A  D  L  P  V  C  E  G  V  E  V  R  I  A  D  F  G  L  T  D  S  G  Y  G  K  I  L  P  R :   N  G  *  F  *  R  D  S  G  Y  D  L  A  F  S  A  I  C  N  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  P  V  S  V  G  G  *  L  H  F  Q  S  G  P  H  R  L  L  S  S  C  *  E  N  D  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  S  S  S  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  I  G  *  G  Y  *  L  L  Y  *  S  *  T  R  Y  S  P  H  F  Y  T  P  L  K  N  G  S  R  G  V  K  R  V  K  S  T  T  S  R  V  I  E  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  D  V  H  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  C  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  A  K  S  F  Q   : E  M  D  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  V  S  F  L  R  A  K  K  M  I  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  S  D  R  D  I  D  F  Y  I  D  L  E  P  G  T  R  P  I  S  I  P  P  *  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  L  M  L  M  R  L  S  F  V  H  Y  P  D  M  P  L  N  S  V  S  V  L  K  S  G  F  A  G  L  *  R  G  *  G  Q  N  C  G  F  R  P  Y  R  *  R  L  R  Q  N  P  S  K  :  K  W  M  I  L  T  *  F  W  V  *  L  G  F  L  R  N  L  Q  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  T  R  *  C  G  R  V  T  T  L  P  I  R  S  A  S  S  P  F  F  V  L  R  K  *  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  Q  *  F  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  R  I  G  I  L  T  S  I  L  I  L  N  P  V  L  A  P  F  L  Y  P  L  K  E  W  L  P  R  S  *  E  S  *  K  H  N  F  K  S  Y  *  T  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="28" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108004" stop="107833"/>
                    <exon start="107088" stop="106712"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEAKFRALSRYATQLCFSPQERICRFVKGLRSELRISALQIAATAKSFQEMDDFDVILGMTWLSPQFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIVSFLRAKKMISKGCLAFLAHLKDDTTQVPSIESVSVVREFLDVFPADLPGMPSDRDIDFYIDLEPGTRPISIPP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="29" PGL_strand="-" PGL_start="108632" PGL_stop="108079"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108632" e_stop="108079"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="108632" e_stop="108079" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108632" stop="108079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="29" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATACTAGGGCAGAGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACGAGTGCAGAATGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCTAGTGTTCTCTGCACCAGCACCTCAGGCTCCAGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTCGAGTGTCAACCAATAGAGGCACCATCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  R  D  S  S  T  D  *  G  G  N  K  R  R  G  G  W  G  N  *  T  S  A  E  *  G  N  A  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  V  *  S  G  P  D  T  P  S  V  L  C  T  S  T  S  G  S  R  G  T  T  C  G  Y  Y  G  S  P  H  G  C  S  I  G  N  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  G  G  C  L  *  F  S  G  *  L  S  R  A  T  T  Q  D  G  Y  S  R  T  V  W  C  G  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  R  V  S  T  N  R  G  T  I  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  E  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  T  E  R  V  Q  N  E  E  M  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  L  V  F  S  A  P  A  P  Q  A  P  E  V  Q  H  A  A  T  M  A  P  R  M  D  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  I  E  A  P  S  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  Q  R  L  L  H  R  L  R  R  *  *  E  K  G  R  M  G  K  L  N  E  C  R  M  R  K  C  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  C  L  I  R  A  R  H  P  *  C  S  L  H  Q  H  L  R  L  Q  R  Y  N  M  R  L  L  W  L  P  A  W  M  F  H  W  K  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  R  R  M  L  M  I  F  W  L  T  V  T  S  Y  Y  T  R  W  V  *  *  N  G  L  V  W  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  S  S  V  N  Q  *  R  H  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="29" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108631" stop="108080"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAETPPPTEEVIREGEDGETERVQNEEMPPQPTPEMINQVLAYLSGLSDQGQTPLVFSAPAPQAPEVQHAATMAPRMDVPLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHVECQPIEAPSMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="30" PGL_strand="-" PGL_start="108991" PGL_stop="108706"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108991" e_stop="108706"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="108991" e_stop="108706" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108991" stop="108706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="30" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCAACTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACGTCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  R  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  L  E  R  L  *  D  F  R  K  I  S  L  F  H  S  F  F  R  A  T  T  *  V  Q  L  V  S  R  R  Y  E  L  V  S  D  Q  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  S  A  R  Q  E  T  T  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  G  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  I  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  N  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  R  R  P  D  K  K  Q  L  S  Q  P  L  G  L  W </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  Q  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  P  *  E  A  I  R  L  *  E  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  *  A  I  R  I  G  I  *  P  T  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  A  N  T  N  V  G  Q  T  R  N  N  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="30" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108942" stop="108706"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFILSFVLLLESNWYLGDTNWYLTNFTLFRRWLELEQRLRQHQRRPDKKQLSQPLGLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="31" PGL_strand="-" PGL_start="109785" PGL_stop="109307"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109785" e_stop="109307"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="109785" e_stop="109307" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109785" stop="109548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109784" stop="109307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="31" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACGAACCGACACGTAGATTTAGGGGATCGAAGTGTCACGTACCGACACAAGAGGAATAATGAATATGAGGGATCGGAGTGTCACGTACCGACACAAGAGAATTAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAACGAACATGATTCCCAAATGAGTATGGTATTGGGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTGCTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTCGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTACAACAAACGTGCCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> S  R  T  D  T  *  I  *  G  I  E  V  S  R  T  D  T  R  G  I  M  N  M  R  D  R  S  V  T  Y  R  H  K  R  I  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  R  T  *  F  P  N  E  Y  G  I  G  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  A  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  Y  L  W  S  T  T  N  V  P  S  S  S  T  Q  Q  *  F  K  P  V  L  L  H  R  K  F  R  V  S  *  C  F  *  L  G   </first_frame>
            <second_frame>  H  E  P  T  R  R  F  R  G  S  K  C  H  V  P  T  Q  E  E  *  *  I  *  G  I  G  V  S  R  T  D  T  R  E  L  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  D  S  Q  M  S  M  V  L  G  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  S  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  F  I  C  G  V  Q  Q  T  C  H  R  L  Q  L  N  S  N  S  S  Q  S  Y  Y  I  G  N  S  G  *  A  N  A  S  S  L  D  </second_frame>
            <third_frame>   T  N  R  H  V  D  L  G  D  R  S  V  T  Y  R  H  K  R  N  N  E  Y  E  G  S  E  C  H  V  P  T  Q  E  N  *  R  *  *  I  L  K  D  V  N  I  L  N  L  T  N  M  I  P  K  *  V  W  Y  W  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  C  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  R  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  F  V  E  Y  N  K  R  A  I  V  F  N  S  T  V  I  Q  A  S  L  T  T  S  E  I  Q  G  E  L  M  L  L  A  W  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="31" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109522" stop="109307"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYDITRYILISILSWPMISTQYPCFVLTPTFMFSSCLFVEYNKRAIVFNSTVIQASLTTSEIQGELMLLAWT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 478 chains have been computed
$ 
$ memory statistics:
$ 515728 bytes spliced alignments in total
$ 156 spliced alignments have been stored
$ 3305 bytes was the average size of a spliced alignment
$ 44896 bytes predicted gene locations in total
$ 31 predicted gene locations have been stored
$ 1448 bytes was the average size of a predicted gene location
$ 4 megabytes was the average size of the backtrace matrix
$ 609 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 05:58:44
-->
