<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 05:49:26"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261310" ref_strand="+" ref_description="SGN-E261310 [cLEG-68-F10]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="-" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="21265" stop="20440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20966" g_stop="20740" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="-" ref_id="SGN-E261310" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>227</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20966" e_stop="20740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACGTTTCTTGCTGAAAATGGCTATAAAAGAAAGTCAATTTTCGATTTTTTAAACACTGAAAATTTTCCTTT-TCTGCATTTATTTTTCTCTCAAATAAAATCAAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTCAAGTTCGCTGAAGTTAAAGAAATTTGAGGTACCACTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGATAAATT</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATC-AAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369759" ref_strand="+" ref_description="SGN-E369759 [TUS-25-O3](-)">
      <seq>taaggttgagaatcgaagaggataataaggctgcagaaaagaggtcacgtggtaattcagcaatatctggagtaaattttgttgaagaagattccacaaaattcaagaaaagaaagaaagcatctggtccaaaacgcaatcctcctaagaagaaattcaatggaaactgctttaattgtggtaaacatggtcatagggctaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttctgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttcttcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="-" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="25701" stop="24396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25401" g_stop="24696" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="-" ref_id="SGN-E369759" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25401" e_stop="24696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCATGTGGTGATTCAGCAATAGCTGGAGTAAATTTTGTTGAAGAAGATCAGACAAAATTAAAGAAAAGAAAGAAAGCATCTGGTCC-AAA-GCAATCCTCCTAAGAATAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTGATGAATGTCGGGGTCCAAAGAAGGACAAGAAAAAGAAGGATCAAGCAAATTTGGCTAAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGAAAATCCAAGAGAATGGTGGATATATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCA-CATATACTCTAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGTTGTTGTAAAGGTGGAAGGAACTGGCAAAGTCTTATTAAAGATGACATCAGGCAAGGTGGTGACTTTAAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGAATTCAAATGTGTATTTGTTTCTAATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGTAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTAATATGAATAAAGATTTTTCTTCTTCTTA</genome_strand>
        <mrna_strand>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTCAAGAAAAGAAAGAAAGCATCTGGTCCAAAACGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395006" ref_strand="-" ref_description="SGN-E395006 [TUS-34-O4]">
      <seq>aagaaattcaatggaaactgctttaattgtggtaaacatggtcataggggtaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttttgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttctttttaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="-" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="25554" stop="24396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25254" g_stop="24696" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="561" polyA_stop="581"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="-" ref_id="SGN-E395006" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395006" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25254" e_stop="24696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTGATGAATGTCGGGGTCCAAAGAAGGACAAGAAAAAGAAGGATCAAGCAAATTTGGCTAAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGAAAATCCAAGAGAATGGTGGATATATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCA-CATATACTCTAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGTTGTTGTAAAGGTGGAAGGAACTGGCAAAGTCTTATTAAAGATGACATCAGGCAAGGTGGTGACTTTAAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGAATTCAAATGTGTATTTGTTTCTAATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGTAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTAATATGAATAAAGATTTTTCTTCTTCTTA</genome_strand>
        <mrna_strand>AAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGGTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250407" ref_strand="-" ref_description="SGN-E250407 [cLEG-6-H3]">
      <seq>aattgtggtaaacatggtcatagggctaatgaaagccggggtcttaagaaggacaagataaagaaggatcaagcaaacttgggtgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcagttacagatgagaaattatttatggccaactccgctgttgcaaaggtgtaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttctgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttcatatgaataaagattttgcttcttattaaaaaaaaaaaaaaaaaaagactcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="-" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="25530" stop="24396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25230" g_stop="24696" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="537" polyA_stop="556"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="-" ref_id="SGN-E250407" ref_strand="-">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250407" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25230" e_stop="24696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTGGTAAACATGGTCATAGGGCTGATGAATGTCGGGGTCCAAAGAAGGACAAGAAAAAGAAGGATCAAGCAAATTTGGCTAAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGAAAATCCAAGAGAATGGTGGATATATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCA-CATATACTCTAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGTTGTTGTAAAGGTGGAAGGAACTGGCAAAGTCTTATTAAAGATGACATCAGGCAAGGTGGTGACTTTAAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGAATTCAAATGTGTATTTGTTTCTAATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGTAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTAATATGAATAAAGATTTTTCTTCTTCTTA</genome_strand>
        <mrna_strand>AATTGTGGTAAACATGGTCATAGGGCTAATGAAAGCCGGGGTCTTAAGAAGGACAAGATAAAGAAGGATCAAGCAAACTTGGGTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCAGTTACAGATGAGAAATTATTTATGGCCAACTCCGCTGTTGCAAAGGTGTAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTCATATGAATAAAGATTTTGCTTCTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375520" ref_strand="+" ref_description="SGN-E375520 [TUS-34-B10](-)">
      <seq>atgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattttggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactttagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtttcatatgttccagaattgagaaataatttagtttcaattccaattttgaccaagaatggatttaaatgtgtatttgtttttgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttttttttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="-" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="25498" stop="24396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25198" g_stop="24696" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="505" polyA_stop="524"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="-" ref_id="SGN-E375520" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25198" e_stop="24696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCGGGGTCCAAAGAAGGACAAGAAAAAGAAGGATCAAGCAAATTTGGCTAAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGAAAATCCAAGAGAATGGTGGATATATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCA-CATATACTCTAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGTTGTTGTAAAGGTGGAAGGAACTGGCAAAGTCTTATTAAAGATGACATCAGGCAAGGTGGTGACTTTAAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGAATTCAAATGTGTATTTGTTTCTAATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGTAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTAATATGAATAAAGATTTTTCTTCTTCTTA</genome_strand>
        <mrna_strand>ATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTTTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTTTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTTTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTTTGACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251204" ref_strand="+" ref_description="SGN-E251204 [cLEG-10-L14]">
      <seq>tcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctctattgtggaaggactttaaaaactacttgaaacacaaacgcaaggagatgattgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="-" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="44057" stop="25113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43757" g_stop="43261" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43260" i_stop="25525" i_length="17736">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.662" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25524" g_stop="25413" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="608" r_length="112" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="-" ref_id="SGN-E251204" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43757" e_stop="43261"/>
          <exon e_start="25524" e_stop="25413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTCAAATAAATATTGGAACAGTAAGTGCTGCTACAACATCGGTTGCACATAATCGTTCAAATACTGCCTTAGAGCCGACTGAGAAACCTACAAAGTTTTCTGGAGTCAACTTTAAGAGATGAAAACAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTTATATCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTTGTGTAAAAATTATATTTTGAGTGATCTGTAAGATGATCTGTACAATGTGTACAGCAATGCCAAAACCTCAAAACAACTCTGGGATGCTTTAGAAAGGAAATATAAAACAGAAGATGCCAGAATGAAGAAATTCATTGTGACAAAAATTCTGGACTATAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGACCTCATTGCTGAAGGTATAAATTTATTTAATGTCTATGTTAGAAATATTAAGTTTTCCCTTAATACTCACATAATCCTTGTGACACCTAATTTTTTACCAAAATATAAAGAGTCCAACACCAATTTTTTAAAAAAGGTTATATTTAAAATAAATAAAAAATAAATAAATTGTGTAAATTACTTTAATGATAAAAATTATGAATTTATGGTATTTGTTTTAAATCTTCAACTTTTAATTAGTTTAAAAATAATGGTAGAAGAAGAAAAAAAGGAGAGTCCTAAATATTCAAATTACCTTCTCCTTATCCTAATTATTCCCAACTTCCTAACTTATTTTACTAAAAAATCTTATCCCATTTATTTTTTATTTTTTTTCTTCTCTCTCTTTGGACGTTCATTTCACTTTTTTTTATTTTTTTAATTTTCTATTATTATTATTTATTTATTTTATATCCATCCTTATCTCAACCCCAATCCCCTCAACAATATTTCAAATTAAATCATAATCCAACTCTATTACTATCCTTTTAATTAGCACTAAACTCTTAGCCAAAATTATTATAAAAACACGTTCAGTTGAGAAGAAAAAAAATACAGAGAGATGTAAATATACACAGATACAAAGAAATACAGAGAGGAAAAGAGAGATATAGAGAAAAATACAGAGAGAAATATAGAAAAAAAATGAGTTATTTCTTTTGAGAATTAGGTTAGAGTTAGAGATTTGATCGTGATTCCGAATTTGTGGATACAACTCGCTTTTATGGTATCAATTTTCGCAGCGAGGTAACTATAAATTCTCGCGTAATTTAAATAATACTACTTCTATGAAAAGTTGATTTTAATAACATGAAATACTTCAAATCACATGTATTATATTATTGTTACGTTATTACTATTATTATGTTTTTAGATAGATTTTGCAATTTATGTTGCTTCATGATATTGAGTTGTTGAATTTAAATAGATTAATATATCTTTTCGTCTATTTTCACTTTAGAGATTTTTGTTGAATAAATTGTAGACTGGTTAGATTAGGATATAAAAATAATAACTAATAAATGATTTTTTCAAAAAGAAAAACTAATCTAAGTAGAATTGTAATTAAAAGGTAAATAGATTTCATTTAGAGATTAATATTATTTACTAATAATAATAATAATAAAAATAATAATAATAATAACAGAAGTAAAAATTGAGAAATTACATAAAGAGAAAAGAGATTTAAAAAATAAAAAGAAAAAAAAGGGCATGAAAATATAATAATAAGAAAAAAAAAACATAACAAAATTTTTTAACAGAAACAAAAAAAAAAGAACGTAAATTCAAAAAAAATATGTATAAAAACGTAAAAAAAAGGGGGGGGGGGGGAGAAGTAAGAAATAAAAAAATAAAAAATACAAATTTAAAATTTATAAAATAGAACGTTTTAAAAAAAAACAATAACATAATAAAAAAAAAGAGTAACAAAATTAGTATGAAATAATTTGAAAAAAAAAAGAAAGAAAGAAGAAGACAAAAATTATAAAATAATAATATAATAAAAATAATGATAAAACAAAAAAAAAAAGAAAGAAGAGAGAAGCAGACTCTTATATATATATATATATATATATATATATAAATAAAATCTAAAATAAAATAAATAAATAAAATAAGAAAAAAGCAGATTTTTCCAAAAAAAACAGAAACAGAATTTTTAAAAAAAAGTAAAAAAAAACGTGAAAAAAAAAGAGAATCAGAATAAAAAACGTAAAAAGAAAAAAAAAGTTAAAAACATAAAAAGAAAGAAAAAGTAAAAAAAAAAAAAGAGGATGTAGCACAAAATTATTTTTTTAGTAAGGAACGTAAAAAAAAATAAAAATAAAAATTAGTTATATCAAAAAAGATAACAAACGTAAACAAAAAGAATTAATCTAAAAATAATAATTATTTTTTTTAAAAAAAGAAGAAGAGTTAAAAATTGTTACATGCATTAAAAGATTAAAAAAAATAAAATTTAACCTTTCTTAAAAAATTAATATAGTCCTAATCTATTTAGAATTTTTGTGATTTTAAAACTAATTCAAATCTCATAAAATTTCATCTTTCTATTATTTTTTTAAAAAAAATAGAAATTCTAAATTAACGTGAACTCTAAATATTTTCTAACTATAAAATACCTATATAATTCATCCCTATAATAACATAAAAATATAAAAAAAAATGTAAAAGCAAAATTAGTCAGTTTAAAATAAGTTTAGAATAAATCTGAAAATAAAATACAATTTTATATTAAGTTTAATAATACAGTGTCCAAAAATTAAGTTTAGTCATATTAAAAGTCAATGAAGCGACCGTGCTAGAACCACGGGACTCGAGGGATGCCTAGCATCTTCCCCTTGGTCAACAGAATTCCTTACTCGGATTTTTAGTTTGCAGACCAATAAAAAATAGAGTCAATTTTCCTTTTGATTAGGGATTTAAATAAGGTGACTTGGAACACCAAAAATCAATTCCAAGTGGCGACTCTGAATAATAATTATCCCTTTTCAAAATGTCACTTTAATTGAAAAAACTCTTTTTCTTTCGAAACAATAAAAAATTAAAAATAAAAAAATATTGAGAGGAAAAAAAAGGAGTGTGACAGATGGCGACTACGCTGGGGATTAACTAGAATTCGAGCTTTCAATATTGATTTATGTATGACTATGATTTATTATTTACATTTTGGGATATTGTATTTATTTGTCTTAATGTGTAAATTGTCTACTTATTTAATGTATGATATTATTTGATCTGCATATAAATTGTGATCTCTCGCGAATTTTACTAAGTCTTCAATAATAATATGATGGGAATTGCAACTATGCACCCCATTTCTGTCAATATAGCCAGTGGATCTTCGGTCCATGGTGAAGGATTTTTAATCACACATATTTAGGATAGGGAGCACCCATGCACAAAGCCGGAAAGTGCTGCTACCGGTACGTTGCTACTTCCTAACTCGAGTTGTCAGCTCGTTTTATAGCCAGTCTAGATACTTTTCTCCACGAGTTTAAACATGATAACTGAAACCAAATGTAATAGTTCCTAATAGACTTCATTATTTGAATCATTTACATATGATTTAATGAAAGACTTTACATATGATCGGATCTATCTAGATAAATAACTCAATTTACCATTTTAAATTAAAATCAGAATAATAGAAAAAGTTTTTTTTCTTTTACAATGTAAAGTTCACAAAAAGAAATTTTAAAAGTTTTCTTATATCACTTTAAACGAAGAAAAAAAATTGCATTTGTCAATAAATTTCTAACAAAAAATATTTTAGTGTTCAATCTGAACGAACTACGCACACCTGATTCTCACCTTGATGAGATACGTAGGCAACCTTCCTTGGGTTCGGTGATCCTTATTTAAAAATTAAAAAATTCAAAAAAATATCTTAATTATTATTTAAAAATTAAAAAATGAAATAATATGTGTATATATTAAAAAGGAAATTTTTCCTTAAGAAAACATATTTTTACTTATATTTTGGAACTACGTTAGACCTGATTCTTGTTTTAACGAGATACGTAGGCAACCTTATTGTGAGGTTCGGTCCAACCGAGAAAAAAAAACCTAAAAATTCTAGTCACATAAACTGGGGCAAAAAAATAGATTTTTTTTCTTTGACTTGGTTGGTAACAACATGCTTAGGATTATGCATAAGAAAGAAAAAATAAAGTGTTAAACTATTTGGTAAGACAGATCAACTTTGTTGTGACCTATAGACTTCTATTGACATCTCTCAATACATTTATGTCATACTTGAGAAATTATCTTGTTTAAAGTTATGGATAAAATAAATTTGACCTCATTGTTTCAAATGCATTGTGTGGTGAGCTTTAGACGTAAAATTCAAAGTCATGATTTTGCTGATCTAGAACTTGGCCCGAATGTTGGTTGAGACGAAATTTTGAGCAACATTTAACTTGAGAAAGGATTATAGGCTTTCTTTGAATCAATTGTGCCTTTCAAGCCTACCGAATAACATTTATCTACATCCCATTTCGACCCTGGAAGTTTTTTATTAGAATAACCATATCTTAGCATATACCTTTTGAGTGTATAAATGCACTAATCCATTTATCTCACCTCCTTGAGCGCACTAGGAAATATCTATATAACATCAAAGATCTAAGTTGGATAACAAAGTGAAAAAGACCAAATATGTCCAAAAAAAAAGATAGAATGAAAAATGAAAAAAAAAAACTCCAACAAAAAGGAGAGAAGATCAAAAAATGAAGAGAGAAAAAATAAATGGAAAAGACCTTACAAGAAAACAAAGGTCAAATGCAAAAACGAAAAAAAAAATATCAAAAGCATCGTGCGAATTTTAAGGAGGAAATAGTCACTTTATCTCAAATGAATATCCTACCTTTCCCTAAGACTACATTACAAGCCAATGACAAGTCCTATTTGATCTCATTTTTTATGTTCTCATATTAGTGGATGCTTACATGAGGGCCAAGCATATGGTATCTTAATCTCATGCATTGAATATCTTTCTGAGTGGGAGTGACTTTCAAAAATGTCCTACGATCTAAATTATTATATTGTGTGAAGTAGGACTTTCATATATTGAGAGTGCATTTGAAACATGAGGATACGAATAATTCTATCCCTTAATTTTGACAAGATAAATTGATCTTGTAATTACTTAAATATATTTGAGATACAATTTGAAATTATATAAATTATTCAAAGTTGACCTCAAATTTATTTGAAAGTCGTTGAATGTAGTTCATATGCATAATACTAATTGTTGGTACCAACTAACGTCAAAGCACTATCAAACATGAACTAATTTTTTTTCCAATTTTTCCATTATATTTTTAAAAATAAATTAAAAAAAAGAAAAATATTTTTTGTTGAACTACGTTCGACCTGATTCCTAAGAGGATATGTAGGTAGCCTTTCATTGAGGTTCGGTCTAATCACTCAATAAAATAATGATCATGCTATTTAAAATCTACAAGGTTGAAACATGACATTGTAGCCTATGGTATGTTATAGAAAAAATAGAAAATAAAAAATAAAAAAAAATAAAAGGGTCTTATGAGTGAAAACTCTCGAGAGAAACATAAGACGACAGTAAAAAATATAAGAATGTCTACTTGGTAAAAAAATCACGAATGATACCATTTATAAAATGATGACATTCCGTCTTGGCATGAGCACAATAAAGATAGAACTAAAGTTATAGGCTGAAAGAGCTATAAAGACAAATCATGCAAGTAATTCGCTAGAGACAAACGCCGCGATGGTAAGTTTTTTTATCCTTGTCTCTCATATAATATGCAAAAAAAAATGAATTATTTTTTTTCTTAATAAAATCTGGGGCATTTTATTTTATTTTTAAATTGGTCAATATACTAATATAAATAAAATAAAATAAAATAATAATAAATAATAATAACATAAGTAAAAAAAAAAACCTATCCTATTTTTCATGTCTTCACAGGGCACAATAACCCCTGGATTACATATAGGGCACAATAACCCCTATCATTTTTCTTCACGGGACACAATAACCCCTGGATTGCATATAGGGCACAATAATCCCTATCATTTTTTTTTCACAGGGCACAATAACCCCTGGATTGCATATAGGGCACAATAACCCCTATCATTTTTTTCATGTCTTCACAGGGCACAATAACCCCTGTATTGCATATAGGGCACAATAACCCCTATCATTTTTTTTGTCTTTACAGGGCACAATAACCCCTGGTTGCATATAGGGCACATTTACCCCTATCATTTTTTTTCTTCACAAGGCACTATAACCCCTAGATTGCATATAGGGCACAATAACCCCTATCATTTTTTATGTCTTCACAGGGCACAATAACCTCTGGTTGCATATAGGGCACAATAACCGCTATCCTATTTTTCATTTCTTCATAGGGCACAATAATCCCTGGATTGCATATAGGGCACAATAACCCCTATCATTTTTTTTATGTTTTCACAGGGCACAATAACCTCTGGTTGCATATGGGGCACAATAATCCCTATTTTATTTTTCATGTCTTCACAGGGCACAATAACCCCTGGTTGCATATAGGGCACAATAACCCCTATTTTATTTTTCATGTCTCACAGGGCACAATAACCTCTGGGTTGCATATAGGGCACAGTAACCCCTATTTTATTTTTTATGTCTCCACAGAGCATAATAACCCCTGATTGCAATTTGGGTACAAAACTCACTTTCGTCTTATTTTTTGTTTTACATTTTGTAATAGGCTACAAAAATATTATTTTATTATTAGTATAGATTTTTATAGCTTTAATCAATAACTCACAAAATTCCTAGTACAAACTAGGTAGAAAATTTTGTTTTTGTGTGCAGGTTTCTACATAGTACACAAATTTGCAGTTCAAAAATAAAAGAATTCATCCTTTCAAGAAAATAAGATTTCAAGAATATCATGCGGGAGAACGTCAGTAGCTGAAGTCAAGTCATGAAGTTTCAAGTCTTAAACTCAGATGTCCAAAGCGAAGTTCGGAATCGATGAACCTACCAAAGAGGGTGAAGCGATATCTAAGAATCCAAAATGAAGACTTGACACTATGGAGTAGATAGGATTTCATATCTTTTCTTTTGCATGTTGTTTTTTTTGTAATAGCTGGAGCTACGAACCGGAATCTCGACAAAACCTCACTCGGCTACCTAACTCATTGGAACTACGCCTGACTCCTTATCATCTCAACATAGGATAGGTAGTTTTAAAAAGTTAGGATACAGTCAAACTTCTTCTCTACTATAAATTTTTCGCATAAATATTTCAGTAAAAAATTAGTCACATTGTTCACGTCTTTGCATGAAAACTTTTCATGTTTTTAAACAAAGAGGGGCATACTGTGAACACCTAATTTTTTACCAAAATATAAAGAGTCAAACACCAATTTTTAAAAAAAGGTTATATTTAAAATAAATAAAAAATAAATAAATTGTATAAATTACTTTAATGATAAAAATTATGAATTTATGGTATTTGTTTTAAATCTTCAACTTTTAATTAGTTTAAAAATAATGGTAGAAAAAGAAAAAAAGGGGAGTCCTAAATATTCAAATTACCTATTCCTTATCCTAATTATTCCCAACTTCCTAACTTATTTTACTAAAAAATCCCATCCCATTTATTTTTTATTTTTTTTCTTCTCTCTCTCTTTGGACGTTCATTTCACTTTTTTTTTATTTTTTTTAATTTTCTATTATTATTATTTAATTATTTTATATCCATCCTTATCTCAACCCCAATCCCCTCAACAACATTTCAAATTAAATCATAATCCAACTCTATTACTATCCTTTTAATTAACACTAAACTCTCAGCCAAAATTATTATAAAAACACGTTCAGTTGAGAAGAAAAAAAATACAGAGAGATGTAAATATACACAGATACACAGATACAAAGAAATACAGAGAGGAAAAGAGAGATATAGAGAAAAATACAGAGAGAAATATAGGAAAAAAACGAGTTATTTCTTTTGAGAATTAGGTTAGAGTTAGAGATTTGATCGTGATTCCGAATTTGTGGATACAGCTCGCTTTTGTGGTATCAATTTTCGCAGCGAGGTAACTGTAAATTCTCGCGTAATTTAAATAATACTACTTCTATGAAAAGTTGATTTTAATAGCATGAAATACTTCAAATCACATGTATTATATTATTGTTACGTTATTACTATTATTATGTTTTTAGATAGATTTTGCAATTTATGTTACTTCATGATATTGAGTTGTTGAATTTAAATAGATTAATATATTTTTTCGTCTATTTTCACTTTAGAGATTTTTGTTGAATAAATTGTAGACTGGTTAGATTAGGATATAAAAATAATAACTAATAAATAATTTTTTCAAAAAGAAAAACTAATCTAAGTAGAATTGTAATTAAAAGGTAAATAAATTTCATTTAGAGATTAATATTATTTACTAATAATAATAATAATAATAATAATAACAGAAGTAAAAATTGAGAAATTACATAAAGAAAAAAGAGATTTAAAAAATAAAAAGAAAAAAAAGGGCATGAAAATATAATAATAAGAAAAAAAAACATAACAAAATTTTTTAACATAAACAAAAAAAAAAGAACGTAAATTCAAAAAAAATATGTATTAAAACGTAAAAAAAAAGGGGGAGAAGTAAGAAATAAAAAAATAAAAATAAAAATTTAAAATTTATAAATAGAACGTTTTAAAAAAAAACAATAACATAATAAAAAAAAGAGTAACAAAAATTAGTATGAAATAATTTGAAAAAAAAAGAAAGAAAGAAGAGGACAAAAATTATAAAATAATAATATAATAAAAATAATGATAAAACAAAAAAAAAGAAGAAGAGAGAAGCAGACTTACAGAATGTAACGACCTGTTTAGTCGTTTTGAGCAACAAACTTCAATTCTGGAAAAACAGGCTGAGACGACGGACCAAACGACGATCCGTCATGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTGACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCATAGATTGTTCAGTGGAAATTGACTCTCTGACTCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGCCCGTCACAGGTTGCACAAATCCCAGGCAGAATCGGATTTCTTTACACGTTTTAAGGGACGTTTTTGGACTATTCCTTCCTTAATTATAGATTTTGTGGGTTTATATTAATAACTCAAATTCTTGGGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGCCATCTTTTACACTTAATTATATGTTAACTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAGAGAACAAGGAGAGAGAGAAATTGATCGATCAAGAGGCAGAGGGAATATCAAAGCTTGGGAAATTGCTTGTTGATTCCAATTCTTCGGTGAAGGTAGGTTATGGTTTTCATGCTTCATAAGTAAACTGTTAATAGTGAATGATATGTATTGGTAGTATTGTAAACCCTACTATATGCTTAATGGTATGTTTGCATGAATAAGATTATGTGATTGTGATAAGATAAGCATGATGAAAATATTGAATCCCAAATCTTGAAAAGAAACTTTAATATACATTATTAATGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATTAAAGTAATGAGATTGATGATGCTTTGGAATAGAGAAGGCTTGATGATTTACAGAATGATATTAGTGGATCGGAGTGTCACGTTCCGACACATAGTATTAGTGGATCGGAGTGTCACGTTCTGACACATAGTATTAGTGGATCGGAGTGTCACGTTCCGACACATAGAATTAGGGGATTAGAGTGTCACGTACCGACACATGTAGGGGATCGGAGTGTCACGTACCGACACATGTAGGGGATCGGAGTGTCACGTTCCACACATGTAGGGGATCGGAGTGTCACGTACCGACACATGTAGGGGATCGGAGTGTCACGTTCCGACACATGTAGGGGATCGGAGTGTCACGTTCCGACACATAGAATTAGGGGATCGGAGTGTCACGTTCCGACACATAGAATTAGGGGATCGGTGTGTCATGTACCGACACATAGTAGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGAGGAAAGATAATGAATCTTGAAAGATGATAATATACTCAACTTAATATACTTAATTCCCAAATGAGTATGGTGTTGAGGCTTGAGCCCTCATGGATGAACTTGATGGTACTTATTGATGATTATAGTACTTGTTGTTGCTACATGTTGAGTTTTATAGTTGATTTACGATAATATTTGATATATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACTCGTGTTTTGTACTGACCCTTACTTTTATGTTTTTCTTCTTGTTATTTTTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAAGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAGGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTTGCTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGTTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTTGCGATCCGATTTGGGTCGTGAAAAATTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTACAAGACTTTAGAAAAATTCCATTCTTTCTTTCTTTCGTGCTATTACTTGGATCCAATTGGTATCTAGGTGATACAAATTGGTATCTAACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGATCAACGACTGCGCCAACACCAACATCGGCAAGACAAGAATCGTCTGAGCCAGCCACTGGGGCTGTAGCTCGAGGAAGAGTAGCGGCAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCACAACATCGACATCAAAAAGGCTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAACACTTCTCCGAGGGGCCTATGATTGAATCCAGAGAATGTTATGGATGTGGGGAGATTGGACATATTAGGAAAAATTGTCCCAGACAAAGTTATAGACCCTCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAACGGCAGAGGTAATGGGCAAACTGGGGCCACTACATCACAACATGGTAGGGGCAACGGACAGACGAACGATAGGACCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGACATCTGATGCTGTCATCACAGGTAATTTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTCGCTAATGGTCTAAATTTACATTGTGAATTTCTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTGTGGTAAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTGGCAATGTATGATTTCGATGTAATTCTGGGTATGACTTGACTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTGGGAGGGTGACGACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTGCTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGATTACAGACAACTGAATAAAGTAACTATTAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCCGGTTATCATCAATTGAAAATACGGGCAACAGATGTGCCAAAGACTGCTTTTCGAACGAGGTATGGGCATTACGAATTTGTGGTGATGTCTTTTGGTCTTACGAATGCCTCTGCTGCGTTCATGAGCTTGATGAATGGTATTTTTAAGCCATATTTGGACCTCTTCGTGATCGTGTTTATTGATGATATATTGGTATACTCAAAGAGCAAGAAGGAACATGAAGAACATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTAAGGAAGGAGTGATGGTGGATCCTTCTAAGATTGAAACAGTGAAGAATTGGGTAAGACCCACTAATGTGTCAGAAATAAGGAGCTTTGTTGGGTTAGCTAGCTACTACCGCCGATTTGTCAAGGGATTCTCTTCTATTGCTTCCCAATTGACGAGCTTGACTAAGCAGAATGTTCCATTTGTATGGTCGGACGAATGTGAGGAAAGCTTTCAGAAGCTCAAGACTTTGTTGACTACCGCACCTATCCTTACCTTGCCAGTAGAGGGTAAGAACTTCATTGTTTATTGTGATGCATCCTATTCTGGGTTGGGTGCAGTACTAATGCAAGAGAAGAGTGTGATTGCTTATGCTTCAAGACAATTAAAAGTGCATGAACGTAACTATCCAACTCATGATTTGGAATTGGCTGCGGTAGTGTTTGCATTAAAGCAATGGAGACACTATTTATATGGGGTTAGGTGTGAGGTCTACACGGATCATCGTAGCCTTCAATATGTCTTTACTCAGAAAGATTTGAACTTAAGACAGAGGAGATGGATGGAACTACTGAAGGACTACAACATCACTATTTTGTATCATCCGGGGAAGGCGAATGTTGTAGCGGATGCTTTAAGTAGAAAGGCGGGAAGCATGGGAAGTCTAGCTCACTTGCACGCTTCTAGACGCCCATTGGCTAGAGAGGTTCAGACTCTAGCTAATGACTTGATGAGATTAGAAGTAAATGAGAAGGGAGGATTGTTGGCTTCTGTGGAGGCAAGATCTTCCTTTCTTGACAAGATTAAGGGAAAACAGTCTGATGATGAGAAACTGCGCAGAATTCAAGATAAGGTATTGCGAGGAGAGGCTAAGGAGGCACAAATTGATGAGGAAGGTGTTTTGAGGATCAAGGGAAGGGTATGTGTACCCCGAGTTGATGATCTGATCAACACTATTCTGACAGAGGCTCATAGTTCAAAGTATTCGATACATCCGGGCGCAACCAAGATGTATCGTGATCTAAAGCAACACTTTTGGTGGAGTAGAATGAAGCGTGATATTGTTGATTTTATTGCCAGATGTCCAAACTGTCAACAAGTAAAGTATGAACACCAGAGGCCCGGAGGAACCCTTCAGAGAATGCCCATTCCGGAATGGAAGTGGGAAAGAATTGCAATGGACTTTGTGGTTGGTCTTCCCAAGACATTGGGAAAATTTGATTCTATTTGGGTAACTGTTGATAGGTTAACTAAGTCTGCTCACTTCATTCCGGTTAAGGTGACTTACAATGCAGAGAAGTTAGCCAAACTTTACATCTCGGAAGTGGTGCGATTGCATGGGGTTCCACTATCCATCATATCAGATAGAGGTACGCAGTTTACTTCTAAGTTCTGGAAAACATTGCATGCGGAATTGGGTACTAGGTTGGACCTTAGTACTGCGTTCCATCCTCAGACCGATGGTCAGTCTGAAAGGACGATTCAAGTGTTGGAGGATATGCTTCGTGCGTGTGTGATAGAGTTTGGTGGTCATTGGGATAGCTTCCTACCCTTAGCGGAGTTTTCATACAATAATAGCTATCACTCAAGCATTGATATGGCTCCATTTGAAGCATTGTATGGTAGGAGATGTAGGTCTCCCATTGGTTGGTTTGATGCATTTGAGGTTAGGCCTTGGGGTACTGACCTTTTGAGGGATTCGATAGAGAAAGGGAAGTCTATTCAAGAAAAGATTCAAGCGGCACAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAGGGTGAACAAGTCTTGTTGAAAGTTTCACCAATGAAAGGGGTGATGCGGTTTGGTAAAAGGGGTAAACTAAGTCCAAGGTACATTGGACCATTTGAAATACTTAAGCGAGTAGGAGAGGTGGCTTATGAGTTAGACTTGCCTCCAGGGCTGTCCAGAGTACATCCGGTATTCCATGTGTCGATGTTGAAAAGATACCATGGGGATGGAAACTACATTATCCGTTGGGATTCCGTTTTGCTTGATGAGAACTTGTCTTATGAGGAGGATCCTGTTGCTATTTTAGATAGAGAAGTTCGCAAGTTGAGGTCAAGAGAGATTGCATCCATCAAGGTGCAATGGAAGAATCGATCGGTTGAAGAAGCCACTTGGGAGAAGGAGGCAGATATGCAAGAAAGATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTCGCCCTTGTTTTCCTTCTTTTGATCGTTCGGGACGAACGATGGGTAAATTGATATCTATTGTAACGACCTGTTTAGTCGTTTTGAGCAACAAACTTCAATTCTGGAAAAACAGGATGAGGCGACGGACCAAACGACGATCCGTCATGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATTCGACTCTCTGAACTTCGTGACGGAATGGGCAGGACGGACCGTCACCGGCGTGACGGACCGTCATAGATTGTTCAGTGGAAATTGACTCTCTGACTCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGCCCGTCACAGGTTGCACAAATCCCAGGCAGAATCGGATTTCCTTACACGTTTTAAGGGACGTTTTTGGACTATTCCTTCCTTAATTATAGATTTTGTGGGTTTATATTAATAACTCAAATTCTTGGGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTTGGGTATTATTGCCATCTTTTACACTTAATTATATGTTAACTAGGGTAAAATAAAGAGGGTTTGAATAAAGAAAATAGAGAGAACAAGGAGAGAGAGAAATTGATCGATCAAGAGGCAGAGGGAATATCAAAGCTTGGGAAATTGCTTGTTGATTCCAATTCTTCGGTGAAGGTAGGTTATGGTTTTCATGCTTCATAAGTAAACTGTTAATAGTGAATGATATGTATTGGTAGTATTGTAAACCCTACTATATACTTAATGGTATGTTTGCATGAATATGATTATGTGATTGTGATAAGATAAGCATGATGAAAATATTGAATCCCAAATCTTGAAAAGAAACTTTAATATACATTATTAATGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATTAAAGTAATGGGATTGATGATGCCTTGGAATAGAGAAGGCTTGATGATTTACAGAATGATATTAGTGGATCGGAGTGTCACGTTCCGACACATAGTATTAGTGGATCGGAGTGTCACGTTCCGACACATAGTATTAGTGGATCAGAGTGTCACGTTCCGACACATAGAATTAGGGGATCAGAGTGTCACGTACCGACACATGTAGGGGATCGAAGTGTCACGTTCCGACACATGTAGGGGATCGGAGTGTCACGTACCGACACATGTAGGGGATCGGAGTGTCACGTTCCGACACATGTAGGGGATCGGAGTGTCACGTTTTGACACATAGAATTAGGGGATCGGAGTGTCACGTTCCGACACATAGAATTAGGGGATCGGAGTATCACGTTCCGACACATAGTAGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGAGGAAAGATAATGAATCTTGAAAGATGATAATATACTCAACTTAATATACTTAATTCCCAAATGAGTATGGTGTTGAGGCTTGAGCCCTCATGGATGAACTTGATGGTACTTATTGATGATTATAGTACTTGTTGTTGCTACATGTTGAGTTTTATAGTTGATTTACGATAATATTTGATATATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACTCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTTACACCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTCTTAGAAACTCTTTGAATTAGTAGTTTAAGGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTGGTTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGTTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGCGTGGGTGCCAGTCGCGTTCGATTTGGGTCGTGACACAGAAGGAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAATCTAAAATAAAATAAATAAATAAAATAAAAAAAGCAGATTTTTCCAAAAAAAAACAGAAACAGAATTTTTTTAAAAAAAAAAAAGTAAAAAAAAAACGTGAAAAAAAGGAGAATCAGAATAAAAAATGTAAAAAGAAAAAAAAAGTTAAAAACATAAAAAGAAAGAAAAAGTAAAAAAAAAGAGAATGTAGCACAAAAAAGATAACAAACGTAAACAAAAAGAATTAATCTAAAAATAATAATTATTTTTTTTTAAAAAAAGAAGACAGAATGTTAAAAATTGTTACATGCATTAAAAGATTAAAAAAATAAAATTTAACCTTTCTTAAAAAAATAAATATAGTCCTAATCTATTTAGAATTTTTGTGATTTTAAAACTAATTCAAATCTCATAAAATTTCATCTTTCTATTATTTTTTTTAAAAAAAATAGAAATTCTAAATTAACATGAACTCTAAATATTTTCTAACTATAAAATACCTATATAATTCATCCCTATAATAACATAAAAATATATAAAAAAAAATGTAAAAGCAAAATTAGTCAGTTTAAAATAAGTTTAGAATAAATCTGAAAATAAAATACAATTTTATTATTAAGTTAAATAATACATTGTACAAAAATTAAGTTTAGTCATATTAAAAGTCAATGAAGCGACCGTGCTAGAACCACGGGACTCGAGGGATGCCTAACACCTTCCCCTCGGTCAACAGAATTCCTTACTCGGATTTTTAGTTCGCAGACCAATAAAAAATAGAGCCAATTTTCCTTTTGATTAGGGATTTAAATAAGGTGACTTGGAACACCAAAAATCAATTCCAAGTGGCGACTCTGAATAATAATTATCCCTTTTCAAAATGTCACTTTAATTGGAAAAACTCTTTTTCTTTCGAAACAATAAAAAATTAAAAATAAAAAAATATTGAAAGGAAAAAAAAGGGGTGTGACAATCCTTAATGTAGGATTGATTGTAAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACATCCATAATAGAAGGACTTCAAAAATTACTTGAAACACAAACGCAAGGAGATGACTGTTGA</genome_strand>
        <mrna_strand>TCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGA-TTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261540" ref_strand="+" ref_description="SGN-E261540 [cLEG-57-K8]">
      <seq>taaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctcctattgtggaaggactttaaaaactacttgaaacacaaacgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="-" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="44236" stop="25128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43936" g_stop="43261" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43260" i_stop="25525" i_length="17736">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.662" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25524" g_stop="25428" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="772" r_length="98" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="-" ref_id="SGN-E261540" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43936" e_stop="43261"/>
          <exon e_start="25524" e_stop="25428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAATAACTTTATCGTTTAATCATAAACAGTTTGTGTAAAGATTTGTTATTTACTGTTAGTATTTCAAATACTTAACTTATCTGTCATTTGTGACAGAAAAAAATGACTGATTCAAGTCAAATAAATATTGGAACAGTAAGTGCTGCTACAACATCGGTTGCACATAATCGTTCAAATACTGCCTTAGAGCCGACTGAGAAACCTACAAAGTTTTCTGGAGTCAACTTTAAGAGATGAAAACAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTTATATCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTTGTGTAAAAATTATATTTTGAGTGATCTGTAAGATGATCTGTACAATGTGTACAGCAATGCCAAAACCTCAAAACAACTCTGGGATGCTTTAGAAAGGAAATATAAAACAGAAGATGCCAGAATGAAGAAATTCATTGTGACAAAAATTCTGGACTATAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGACCTCATTGCTGAAGGTATAAATTTATTTAATGTCTATGTTAGAAATATTAAGTTTTCCCTTAATACTCACATAATCCTTGTGACACCTAATTTTTTACCAAAATATAAAGAGTCCAACACCAATTTTTTAAAAAAGGTTATATTTAAAATAAATAAAAAATAAATAAATTGTGTAAATTACTTTAATGATAAAAATTATGAATTTATGGTATTTGTTTTAAATCTTCAACTTTTAATTAGTTTAAAAATAATGGTAGAAGAAGAAAAAAAGGAGAGTCCTAAATATTCAAATTACCTTCTCCTTATCCTAATTATTCCCAACTTCCTAACTTATTTTACTAAAAAATCTTATCCCATTTATTTTTTATTTTTTTTCTTCTCTCTCTTTGGACGTTCATTTCACTTTTTTTTATTTTTTTAATTTTCTATTATTATTATTTATTTATTTTATATCCATCCTTATCTCAACCCCAATCCCCTCAACAATATTTCAAATTAAATCATAATCCAACTCTATTACTATCCTTTTAATTAGCACTAAACTCTTAGCCAAAATTATTATAAAAACACGTTCAGTTGAGAAGAAAAAAAATACAGAGAGATGTAAATATACACAGATACAAAGAAATACAGAGAGGAAAAGAGAGATATAGAGAAAAATACAGAGAGAAATATAGAAAAAAAATGAGTTATTTCTTTTGAGAATTAGGTTAGAGTTAGAGATTTGATCGTGATTCCGAATTTGTGGATACAACTCGCTTTTATGGTATCAATTTTCGCAGCGAGGTAACTATAAATTCTCGCGTAATTTAAATAATACTACTTCTATGAAAAGTTGATTTTAATAACATGAAATACTTCAAATCACATGTATTATATTATTGTTACGTTATTACTATTATTATGTTTTTAGATAGATTTTGCAATTTATGTTGCTTCATGATATTGAGTTGTTGAATTTAAATAGATTAATATATCTTTTCGTCTATTTTCACTTTAGAGATTTTTGTTGAATAAATTGTAGACTGGTTAGATTAGGATATAAAAATAATAACTAATAAATGATTTTTTCAAAAAGAAAAACTAATCTAAGTAGAATTGTAATTAAAAGGTAAATAGATTTCATTTAGAGATTAATATTATTTACTAATAATAATAATAATAAAAATAATAATAATAATAACAGAAGTAAAAATTGAGAAATTACATAAAGAGAAAAGAGATTTAAAAAATAAAAAGAAAAAAAAGGGCATGAAAATATAATAATAAGAAAAAAAAAACATAACAAAATTTTTTAACAGAAACAAAAAAAAAAGAACGTAAATTCAAAAAAAATATGTATAAAAACGTAAAAAAAAGGGGGGGGGGGGGAGAAGTAAGAAATAAAAAAATAAAAAATACAAATTTAAAATTTATAAAATAGAACGTTTTAAAAAAAAACAATAACATAATAAAAAAAAAGAGTAACAAAATTAGTATGAAATAATTTGAAAAAAAAAAGAAAGAAAGAAGAAGACAAAAATTATAAAATAATAATATAATAAAAATAATGATAAAACAAAAAAAAAAAGAAAGAAGAGAGAAGCAGACTCTTATATATATATATATATATATATATATATAAATAAAATCTAAAATAAAATAAATAAATAAAATAAGAAAAAAGCAGATTTTTCCAAAAAAAACAGAAACAGAATTTTTAAAAAAAAGTAAAAAAAAACGTGAAAAAAAAAGAGAATCAGAATAAAAAACGTAAAAAGAAAAAAAAAGTTAAAAACATAAAAAGAAAGAAAAAGTAAAAAAAAAAAAAGAGGATGTAGCACAAAATTATTTTTTTAGTAAGGAACGTAAAAAAAAATAAAAATAAAAATTAGTTATATCAAAAAAGATAACAAACGTAAACAAAAAGAATTAATCTAAAAATAATAATTATTTTTTTTAAAAAAAGAAGAAGAGTTAAAAATTGTTACATGCATTAAAAGATTAAAAAAAATAAAATTTAACCTTTCTTAAAAAATTAATATAGTCCTAATCTATTTAGAATTTTTGTGATTTTAAAACTAATTCAAATCTCATAAAATTTCATCTTTCTATTATTTTTTTAAAAAAAATAGAAATTCTAAATTAACGTGAACTCTAAATATTTTCTAACTATAAAATACCTATATAATTCATCCCTATAATAACATAAAAATATAAAAAAAAATGTAAAAGCAAAATTAGTCAGTTTAAAATAAGTTTAGAATAAATCTGAAAATAAAATACAATTTTATATTAAGTTTAATAATACAGTGTCCAAAAATTAAGTTTAGTCATATTAAAAGTCAATGAAGCGACCGTGCTAGAACCACGGGACTCGAGGGATGCCTAGCATCTTCCCCTTGGTCAACAGAATTCCTTACTCGGATTTTTAGTTTGCAGACCAATAAAAAATAGAGTCAATTTTCCTTTTGATTAGGGATTTAAATAAGGTGACTTGGAACACCAAAAATCAATTCCAAGTGGCGACTCTGAATAATAATTATCCCTTTTCAAAATGTCACTTTAATTGAAAAAACTCTTTTTCTTTCGAAACAATAAAAAATTAAAAATAAAAAAATATTGAGAGGAAAAAAAAGGAGTGTGACAGATGGCGACTACGCTGGGGATTAACTAGAATTCGAGCTTTCAATATTGATTTATGTATGACTATGATTTATTATTTACATTTTGGGATATTGTATTTATTTGTCTTAATGTGTAAATTGTCTACTTATTTAATGTATGATATTATTTGATCTGCATATAAATTGTGATCTCTCGCGAATTTTACTAAGTCTTCAATAATAATATGATGGGAATTGCAACTATGCACCCCATTTCTGTCAATATAGCCAGTGGATCTTCGGTCCATGGTGAAGGATTTTTAATCACACATATTTAGGATAGGGAGCACCCATGCACAAAGCCGGAAAGTGCTGCTACCGGTACGTTGCTACTTCCTAACTCGAGTTGTCAGCTCGTTTTATAGCCAGTCTAGATACTTTTCTCCACGAGTTTAAACATGATAACTGAAACCAAATGTAATAGTTCCTAATAGACTTCATTATTTGAATCATTTACATATGATTTAATGAAAGACTTTACATATGATCGGATCTATCTAGATAAATAACTCAATTTACCATTTTAAATTAAAATCAGAATAATAGAAAAAGTTTTTTTTCTTTTACAATGTAAAGTTCACAAAAAGAAATTTTAAAAGTTTTCTTATATCACTTTAAACGAAGAAAAAAAATTGCATTTGTCAATAAATTTCTAACAAAAAATATTTTAGTGTTCAATCTGAACGAACTACGCACACCTGATTCTCACCTTGATGAGATACGTAGGCAACCTTCCTTGGGTTCGGTGATCCTTATTTAAAAATTAAAAAATTCAAAAAAATATCTTAATTATTATTTAAAAATTAAAAAATGAAATAATATGTGTATATATTAAAAAGGAAATTTTTCCTTAAGAAAACATATTTTTACTTATATTTTGGAACTACGTTAGACCTGATTCTTGTTTTAACGAGATACGTAGGCAACCTTATTGTGAGGTTCGGTCCAACCGAGAAAAAAAAACCTAAAAATTCTAGTCACATAAACTGGGGCAAAAAAATAGATTTTTTTTCTTTGACTTGGTTGGTAACAACATGCTTAGGATTATGCATAAGAAAGAAAAAATAAAGTGTTAAACTATTTGGTAAGACAGATCAACTTTGTTGTGACCTATAGACTTCTATTGACATCTCTCAATACATTTATGTCATACTTGAGAAATTATCTTGTTTAAAGTTATGGATAAAATAAATTTGACCTCATTGTTTCAAATGCATTGTGTGGTGAGCTTTAGACGTAAAATTCAAAGTCATGATTTTGCTGATCTAGAACTTGGCCCGAATGTTGGTTGAGACGAAATTTTGAGCAACATTTAACTTGAGAAAGGATTATAGGCTTTCTTTGAATCAATTGTGCCTTTCAAGCCTACCGAATAACATTTATCTACATCCCATTTCGACCCTGGAAGTTTTTTATTAGAATAACCATATCTTAGCATATACCTTTTGAGTGTATAAATGCACTAATCCATTTATCTCACCTCCTTGAGCGCACTAGGAAATATCTATATAACATCAAAGATCTAAGTTGGATAACAAAGTGAAAAAGACCAAATATGTCCAAAAAAAAAGATAGAATGAAAAATGAAAAAAAAAAACTCCAACAAAAAGGAGAGAAGATCAAAAAATGAAGAGAGAAAAAATAAATGGAAAAGACCTTACAAGAAAACAAAGGTCAAATGCAAAAACGAAAAAAAAAATATCAAAAGCATCGTGCGAATTTTAAGGAGGAAATAGTCACTTTATCTCAAATGAATATCCTACCTTTCCCTAAGACTACATTACAAGCCAATGACAAGTCCTATTTGATCTCATTTTTTATGTTCTCATATTAGTGGATGCTTACATGAGGGCCAAGCATATGGTATCTTAATCTCATGCATTGAATATCTTTCTGAGTGGGAGTGACTTTCAAAAATGTCCTACGATCTAAATTATTATATTGTGTGAAGTAGGACTTTCATATATTGAGAGTGCATTTGAAACATGAGGATACGAATAATTCTATCCCTTAATTTTGACAAGATAAATTGATCTTGTAATTACTTAAATATATTTGAGATACAATTTGAAATTATATAAATTATTCAAAGTTGACCTCAAATTTATTTGAAAGTCGTTGAATGTAGTTCATATGCATAATACTAATTGTTGGTACCAACTAACGTCAAAGCACTATCAAACATGAACTAATTTTTTTTCCAATTTTTCCATTATATTTTTAAAAATAAATTAAAAAAAAGAAAAATATTTTTTGTTGAACTACGTTCGACCTGATTCCTAAGAGGATATGTAGGTAGCCTTTCATTGAGGTTCGGTCTAATCACTCAATAAAATAATGATCATGCTATTTAAAATCTACAAGGTTGAAACATGACATTGTAGCCTATGGTATGTTATAGAAAAAATAGAAAATAAAAAATAAAAAAAAATAAAAGGGTCTTATGAGTGAAAACTCTCGAGAGAAACATAAGACGACAGTAAAAAATATAAGAATGTCTACTTGGTAAAAAAATCACGAATGATACCATTTATAAAATGATGACATTCCGTCTTGGCATGAGCACAATAAAGATAGAACTAAAGTTATAGGCTGAAAGAGCTATAAAGACAAATCATGCAAGTAATTCGCTAGAGACAAACGCCGCGATGGTAAGTTTTTTTATCCTTGTCTCTCATATAATATGCAAAAAAAAATGAATTATTTTTTTTCTTAATAAAATCTGGGGCATTTTATTTTATTTTTAAATTGGTCAATATACTAATATAAATAAAATAAAATAAAATAATAATAAATAATAATAACATAAGTAAAAAAAAAAACCTATCCTATTTTTCATGTCTTCACAGGGCACAATAACCCCTGGATTACATATAGGGCACAATAACCCCTATCATTTTTCTTCACGGGACACAATAACCCCTGGATTGCATATAGGGCACAATAATCCCTATCATTTTTTTTTCACAGGGCACAATAACCCCTGGATTGCATATAGGGCACAATAACCCCTATCATTTTTTTCATGTCTTCACAGGGCACAATAACCCCTGTATTGCATATAGGGCACAATAACCCCTATCATTTTTTTTGTCTTTACAGGGCACAATAACCCCTGGTTGCATATAGGGCACATTTACCCCTATCATTTTTTTTCTTCACAAGGCACTATAACCCCTAGATTGCATATAGGGCACAATAACCCCTATCATTTTTTATGTCTTCACAGGGCACAATAACCTCTGGTTGCATATAGGGCACAATAACCGCTATCCTATTTTTCATTTCTTCATAGGGCACAATAATCCCTGGATTGCATATAGGGCACAATAACCCCTATCATTTTTTTTATGTTTTCACAGGGCACAATAACCTCTGGTTGCATATGGGGCACAATAATCCCTATTTTATTTTTCATGTCTTCACAGGGCACAATAACCCCTGGTTGCATATAGGGCACAATAACCCCTATTTTATTTTTCATGTCTCACAGGGCACAATAACCTCTGGGTTGCATATAGGGCACAGTAACCCCTATTTTATTTTTTATGTCTCCACAGAGCATAATAACCCCTGATTGCAATTTGGGTACAAAACTCACTTTCGTCTTATTTTTTGTTTTACATTTTGTAATAGGCTACAAAAATATTATTTTATTATTAGTATAGATTTTTATAGCTTTAATCAATAACTCACAAAATTCCTAGTACAAACTAGGTAGAAAATTTTGTTTTTGTGTGCAGGTTTCTACATAGTACACAAATTTGCAGTTCAAAAATAAAAGAATTCATCCTTTCAAGAAAATAAGATTTCAAGAATATCATGCGGGAGAACGTCAGTAGCTGAAGTCAAGTCATGAAGTTTCAAGTCTTAAACTCAGATGTCCAAAGCGAAGTTCGGAATCGATGAACCTACCAAAGAGGGTGAAGCGATATCTAAGAATCCAAAATGAAGACTTGACACTATGGAGTAGATAGGATTTCATATCTTTTCTTTTGCATGTTGTTTTTTTTGTAATAGCTGGAGCTACGAACCGGAATCTCGACAAAACCTCACTCGGCTACCTAACTCATTGGAACTACGCCTGACTCCTTATCATCTCAACATAGGATAGGTAGTTTTAAAAAGTTAGGATACAGTCAAACTTCTTCTCTACTATAAATTTTTCGCATAAATATTTCAGTAAAAAATTAGTCACATTGTTCACGTCTTTGCATGAAAACTTTTCATGTTTTTAAACAAAGAGGGGCATACTGTGAACACCTAATTTTTTACCAAAATATAAAGAGTCAAACACCAATTTTTAAAAAAAGGTTATATTTAAAATAAATAAAAAATAAATAAATTGTATAAATTACTTTAATGATAAAAATTATGAATTTATGGTATTTGTTTTAAATCTTCAACTTTTAATTAGTTTAAAAATAATGGTAGAAAAAGAAAAAAAGGGGAGTCCTAAATATTCAAATTACCTATTCCTTATCCTAATTATTCCCAACTTCCTAACTTATTTTACTAAAAAATCCCATCCCATTTATTTTTTATTTTTTTTCTTCTCTCTCTCTTTGGACGTTCATTTCACTTTTTTTTTATTTTTTTTAATTTTCTATTATTATTATTTAATTATTTTATATCCATCCTTATCTCAACCCCAATCCCCTCAACAACATTTCAAATTAAATCATAATCCAACTCTATTACTATCCTTTTAATTAACACTAAACTCTCAGCCAAAATTATTATAAAAACACGTTCAGTTGAGAAGAAAAAAAATACAGAGAGATGTAAATATACACAGATACACAGATACAAAGAAATACAGAGAGGAAAAGAGAGATATAGAGAAAAATACAGAGAGAAATATAGGAAAAAAACGAGTTATTTCTTTTGAGAATTAGGTTAGAGTTAGAGATTTGATCGTGATTCCGAATTTGTGGATACAGCTCGCTTTTGTGGTATCAATTTTCGCAGCGAGGTAACTGTAAATTCTCGCGTAATTTAAATAATACTACTTCTATGAAAAGTTGATTTTAATAGCATGAAATACTTCAAATCACATGTATTATATTATTGTTACGTTATTACTATTATTATGTTTTTAGATAGATTTTGCAATTTATGTTACTTCATGATATTGAGTTGTTGAATTTAAATAGATTAATATATTTTTTCGTCTATTTTCACTTTAGAGATTTTTGTTGAATAAATTGTAGACTGGTTAGATTAGGATATAAAAATAATAACTAATAAATAATTTTTTCAAAAAGAAAAACTAATCTAAGTAGAATTGTAATTAAAAGGTAAATAAATTTCATTTAGAGATTAATATTATTTACTAATAATAATAATAATAATAATAATAACAGAAGTAAAAATTGAGAAATTACATAAAGAAAAAAGAGATTTAAAAAATAAAAAGAAAAAAAAGGGCATGAAAATATAATAATAAGAAAAAAAAACATAACAAAATTTTTTAACATAAACAAAAAAAAAAGAACGTAAATTCAAAAAAAATATGTATTAAAACGTAAAAAAAAAGGGGGAGAAGTAAGAAATAAAAAAATAAAAATAAAAATTTAAAATTTATAAATAGAACGTTTTAAAAAAAAACAATAACATAATAAAAAAAAGAGTAACAAAAATTAGTATGAAATAATTTGAAAAAAAAAGAAAGAAAGAAGAGGACAAAAATTATAAAATAATAATATAATAAAAATAATGATAAAACAAAAAAAAAGAAGAAGAGAGAAGCAGACTTACAGAATGTAACGACCTGTTTAGTCGTTTTGAGCAACAAACTTCAATTCTGGAAAAACAGGCTGAGACGACGGACCAAACGACGATCCGTCATGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTGACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCATAGATTGTTCAGTGGAAATTGACTCTCTGACTCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGCCCGTCACAGGTTGCACAAATCCCAGGCAGAATCGGATTTCTTTACACGTTTTAAGGGACGTTTTTGGACTATTCCTTCCTTAATTATAGATTTTGTGGGTTTATATTAATAACTCAAATTCTTGGGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGCCATCTTTTACACTTAATTATATGTTAACTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAGAGAACAAGGAGAGAGAGAAATTGATCGATCAAGAGGCAGAGGGAATATCAAAGCTTGGGAAATTGCTTGTTGATTCCAATTCTTCGGTGAAGGTAGGTTATGGTTTTCATGCTTCATAAGTAAACTGTTAATAGTGAATGATATGTATTGGTAGTATTGTAAACCCTACTATATGCTTAATGGTATGTTTGCATGAATAAGATTATGTGATTGTGATAAGATAAGCATGATGAAAATATTGAATCCCAAATCTTGAAAAGAAACTTTAATATACATTATTAATGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATTAAAGTAATGAGATTGATGATGCTTTGGAATAGAGAAGGCTTGATGATTTACAGAATGATATTAGTGGATCGGAGTGTCACGTTCCGACACATAGTATTAGTGGATCGGAGTGTCACGTTCTGACACATAGTATTAGTGGATCGGAGTGTCACGTTCCGACACATAGAATTAGGGGATTAGAGTGTCACGTACCGACACATGTAGGGGATCGGAGTGTCACGTACCGACACATGTAGGGGATCGGAGTGTCACGTTCCACACATGTAGGGGATCGGAGTGTCACGTACCGACACATGTAGGGGATCGGAGTGTCACGTTCCGACACATGTAGGGGATCGGAGTGTCACGTTCCGACACATAGAATTAGGGGATCGGAGTGTCACGTTCCGACACATAGAATTAGGGGATCGGTGTGTCATGTACCGACACATAGTAGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGAGGAAAGATAATGAATCTTGAAAGATGATAATATACTCAACTTAATATACTTAATTCCCAAATGAGTATGGTGTTGAGGCTTGAGCCCTCATGGATGAACTTGATGGTACTTATTGATGATTATAGTACTTGTTGTTGCTACATGTTGAGTTTTATAGTTGATTTACGATAATATTTGATATATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACTCGTGTTTTGTACTGACCCTTACTTTTATGTTTTTCTTCTTGTTATTTTTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAAGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAGGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTTGCTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGTTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTTGCGATCCGATTTGGGTCGTGAAAAATTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTACAAGACTTTAGAAAAATTCCATTCTTTCTTTCTTTCGTGCTATTACTTGGATCCAATTGGTATCTAGGTGATACAAATTGGTATCTAACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGATCAACGACTGCGCCAACACCAACATCGGCAAGACAAGAATCGTCTGAGCCAGCCACTGGGGCTGTAGCTCGAGGAAGAGTAGCGGCAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCACAACATCGACATCAAAAAGGCTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAACACTTCTCCGAGGGGCCTATGATTGAATCCAGAGAATGTTATGGATGTGGGGAGATTGGACATATTAGGAAAAATTGTCCCAGACAAAGTTATAGACCCTCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAACGGCAGAGGTAATGGGCAAACTGGGGCCACTACATCACAACATGGTAGGGGCAACGGACAGACGAACGATAGGACCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGACATCTGATGCTGTCATCACAGGTAATTTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTCGCTAATGGTCTAAATTTACATTGTGAATTTCTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTGTGGTAAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTGGCAATGTATGATTTCGATGTAATTCTGGGTATGACTTGACTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTGGGAGGGTGACGACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTGCTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGATTACAGACAACTGAATAAAGTAACTATTAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCCGGTTATCATCAATTGAAAATACGGGCAACAGATGTGCCAAAGACTGCTTTTCGAACGAGGTATGGGCATTACGAATTTGTGGTGATGTCTTTTGGTCTTACGAATGCCTCTGCTGCGTTCATGAGCTTGATGAATGGTATTTTTAAGCCATATTTGGACCTCTTCGTGATCGTGTTTATTGATGATATATTGGTATACTCAAAGAGCAAGAAGGAACATGAAGAACATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTAAGGAAGGAGTGATGGTGGATCCTTCTAAGATTGAAACAGTGAAGAATTGGGTAAGACCCACTAATGTGTCAGAAATAAGGAGCTTTGTTGGGTTAGCTAGCTACTACCGCCGATTTGTCAAGGGATTCTCTTCTATTGCTTCCCAATTGACGAGCTTGACTAAGCAGAATGTTCCATTTGTATGGTCGGACGAATGTGAGGAAAGCTTTCAGAAGCTCAAGACTTTGTTGACTACCGCACCTATCCTTACCTTGCCAGTAGAGGGTAAGAACTTCATTGTTTATTGTGATGCATCCTATTCTGGGTTGGGTGCAGTACTAATGCAAGAGAAGAGTGTGATTGCTTATGCTTCAAGACAATTAAAAGTGCATGAACGTAACTATCCAACTCATGATTTGGAATTGGCTGCGGTAGTGTTTGCATTAAAGCAATGGAGACACTATTTATATGGGGTTAGGTGTGAGGTCTACACGGATCATCGTAGCCTTCAATATGTCTTTACTCAGAAAGATTTGAACTTAAGACAGAGGAGATGGATGGAACTACTGAAGGACTACAACATCACTATTTTGTATCATCCGGGGAAGGCGAATGTTGTAGCGGATGCTTTAAGTAGAAAGGCGGGAAGCATGGGAAGTCTAGCTCACTTGCACGCTTCTAGACGCCCATTGGCTAGAGAGGTTCAGACTCTAGCTAATGACTTGATGAGATTAGAAGTAAATGAGAAGGGAGGATTGTTGGCTTCTGTGGAGGCAAGATCTTCCTTTCTTGACAAGATTAAGGGAAAACAGTCTGATGATGAGAAACTGCGCAGAATTCAAGATAAGGTATTGCGAGGAGAGGCTAAGGAGGCACAAATTGATGAGGAAGGTGTTTTGAGGATCAAGGGAAGGGTATGTGTACCCCGAGTTGATGATCTGATCAACACTATTCTGACAGAGGCTCATAGTTCAAAGTATTCGATACATCCGGGCGCAACCAAGATGTATCGTGATCTAAAGCAACACTTTTGGTGGAGTAGAATGAAGCGTGATATTGTTGATTTTATTGCCAGATGTCCAAACTGTCAACAAGTAAAGTATGAACACCAGAGGCCCGGAGGAACCCTTCAGAGAATGCCCATTCCGGAATGGAAGTGGGAAAGAATTGCAATGGACTTTGTGGTTGGTCTTCCCAAGACATTGGGAAAATTTGATTCTATTTGGGTAACTGTTGATAGGTTAACTAAGTCTGCTCACTTCATTCCGGTTAAGGTGACTTACAATGCAGAGAAGTTAGCCAAACTTTACATCTCGGAAGTGGTGCGATTGCATGGGGTTCCACTATCCATCATATCAGATAGAGGTACGCAGTTTACTTCTAAGTTCTGGAAAACATTGCATGCGGAATTGGGTACTAGGTTGGACCTTAGTACTGCGTTCCATCCTCAGACCGATGGTCAGTCTGAAAGGACGATTCAAGTGTTGGAGGATATGCTTCGTGCGTGTGTGATAGAGTTTGGTGGTCATTGGGATAGCTTCCTACCCTTAGCGGAGTTTTCATACAATAATAGCTATCACTCAAGCATTGATATGGCTCCATTTGAAGCATTGTATGGTAGGAGATGTAGGTCTCCCATTGGTTGGTTTGATGCATTTGAGGTTAGGCCTTGGGGTACTGACCTTTTGAGGGATTCGATAGAGAAAGGGAAGTCTATTCAAGAAAAGATTCAAGCGGCACAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAGGGTGAACAAGTCTTGTTGAAAGTTTCACCAATGAAAGGGGTGATGCGGTTTGGTAAAAGGGGTAAACTAAGTCCAAGGTACATTGGACCATTTGAAATACTTAAGCGAGTAGGAGAGGTGGCTTATGAGTTAGACTTGCCTCCAGGGCTGTCCAGAGTACATCCGGTATTCCATGTGTCGATGTTGAAAAGATACCATGGGGATGGAAACTACATTATCCGTTGGGATTCCGTTTTGCTTGATGAGAACTTGTCTTATGAGGAGGATCCTGTTGCTATTTTAGATAGAGAAGTTCGCAAGTTGAGGTCAAGAGAGATTGCATCCATCAAGGTGCAATGGAAGAATCGATCGGTTGAAGAAGCCACTTGGGAGAAGGAGGCAGATATGCAAGAAAGATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTCGCCCTTGTTTTCCTTCTTTTGATCGTTCGGGACGAACGATGGGTAAATTGATATCTATTGTAACGACCTGTTTAGTCGTTTTGAGCAACAAACTTCAATTCTGGAAAAACAGGATGAGGCGACGGACCAAACGACGATCCGTCATGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATTCGACTCTCTGAACTTCGTGACGGAATGGGCAGGACGGACCGTCACCGGCGTGACGGACCGTCATAGATTGTTCAGTGGAAATTGACTCTCTGACTCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGCCCGTCACAGGTTGCACAAATCCCAGGCAGAATCGGATTTCCTTACACGTTTTAAGGGACGTTTTTGGACTATTCCTTCCTTAATTATAGATTTTGTGGGTTTATATTAATAACTCAAATTCTTGGGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTTGGGTATTATTGCCATCTTTTACACTTAATTATATGTTAACTAGGGTAAAATAAAGAGGGTTTGAATAAAGAAAATAGAGAGAACAAGGAGAGAGAGAAATTGATCGATCAAGAGGCAGAGGGAATATCAAAGCTTGGGAAATTGCTTGTTGATTCCAATTCTTCGGTGAAGGTAGGTTATGGTTTTCATGCTTCATAAGTAAACTGTTAATAGTGAATGATATGTATTGGTAGTATTGTAAACCCTACTATATACTTAATGGTATGTTTGCATGAATATGATTATGTGATTGTGATAAGATAAGCATGATGAAAATATTGAATCCCAAATCTTGAAAAGAAACTTTAATATACATTATTAATGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATTAAAGTAATGGGATTGATGATGCCTTGGAATAGAGAAGGCTTGATGATTTACAGAATGATATTAGTGGATCGGAGTGTCACGTTCCGACACATAGTATTAGTGGATCGGAGTGTCACGTTCCGACACATAGTATTAGTGGATCAGAGTGTCACGTTCCGACACATAGAATTAGGGGATCAGAGTGTCACGTACCGACACATGTAGGGGATCGAAGTGTCACGTTCCGACACATGTAGGGGATCGGAGTGTCACGTACCGACACATGTAGGGGATCGGAGTGTCACGTTCCGACACATGTAGGGGATCGGAGTGTCACGTTTTGACACATAGAATTAGGGGATCGGAGTGTCACGTTCCGACACATAGAATTAGGGGATCGGAGTATCACGTTCCGACACATAGTAGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGAGGAAAGATAATGAATCTTGAAAGATGATAATATACTCAACTTAATATACTTAATTCCCAAATGAGTATGGTGTTGAGGCTTGAGCCCTCATGGATGAACTTGATGGTACTTATTGATGATTATAGTACTTGTTGTTGCTACATGTTGAGTTTTATAGTTGATTTACGATAATATTTGATATATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACTCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTTACACCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTCTTAGAAACTCTTTGAATTAGTAGTTTAAGGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTGGTTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGTTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGCGTGGGTGCCAGTCGCGTTCGATTTGGGTCGTGACACAGAAGGAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAATCTAAAATAAAATAAATAAATAAAATAAAAAAAGCAGATTTTTCCAAAAAAAAACAGAAACAGAATTTTTTTAAAAAAAAAAAAGTAAAAAAAAAACGTGAAAAAAAGGAGAATCAGAATAAAAAATGTAAAAAGAAAAAAAAAGTTAAAAACATAAAAAGAAAGAAAAAGTAAAAAAAAAGAGAATGTAGCACAAAAAAGATAACAAACGTAAACAAAAAGAATTAATCTAAAAATAATAATTATTTTTTTTTAAAAAAAGAAGACAGAATGTTAAAAATTGTTACATGCATTAAAAGATTAAAAAAATAAAATTTAACCTTTCTTAAAAAAATAAATATAGTCCTAATCTATTTAGAATTTTTGTGATTTTAAAACTAATTCAAATCTCATAAAATTTCATCTTTCTATTATTTTTTTTAAAAAAAATAGAAATTCTAAATTAACATGAACTCTAAATATTTTCTAACTATAAAATACCTATATAATTCATCCCTATAATAACATAAAAATATATAAAAAAAAATGTAAAAGCAAAATTAGTCAGTTTAAAATAAGTTTAGAATAAATCTGAAAATAAAATACAATTTTATTATTAAGTTAAATAATACATTGTACAAAAATTAAGTTTAGTCATATTAAAAGTCAATGAAGCGACCGTGCTAGAACCACGGGACTCGAGGGATGCCTAACACCTTCCCCTCGGTCAACAGAATTCCTTACTCGGATTTTTAGTTCGCAGACCAATAAAAAATAGAGCCAATTTTCCTTTTGATTAGGGATTTAAATAAGGTGACTTGGAACACCAAAAATCAATTCCAAGTGGCGACTCTGAATAATAATTATCCCTTTTCAAAATGTCACTTTAATTGGAAAAACTCTTTTTCTTTCGAAACAATAAAAAATTAAAAATAAAAAAATATTGAAAGGAAAAAAAAGGGGTGTGACAATCCTTAATGTAGGATTGATTGTAAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACATCC-ATAATAGAAGGACTTCAAAAATTACTTGAAACACAAACGCAA</genome_strand>
        <mrna_strand>TAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGA-TTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="28894" stop="29671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29194" g_stop="29370" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29194" e_stop="29370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTCCTTTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="30375" stop="31687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30675" g_stop="31387" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30675" e_stop="31387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTTTCAATCTTAGAAGGATCCACCATCACTCCTTCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAACACGATCACGAAGAGGTCCAAATATGGCTTAAAAATACCATTCATCAAGCTCATGAACGCAGCAGAGGCATTCGTAAGACCAAAAGACATCACCACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCTGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACTTTATTCAGTTGTCTGTAATCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTC-TTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="30375" stop="31570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30675" g_stop="31270" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30675" e_stop="31270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTTTCAATCTTAGAAGGATCCACCATCACTCCTTCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAACACGATCACGAAGAGGTCCAAATATGGCTTAAAAATACCATTCATCAAGCTCATGAACGCAGCAGAGGCATTCGTAAGACCAAAAGACATCACCACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCTGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACTTTATTCAGTTGTCTGTAATCTATGCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="30375" stop="31500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30675" g_stop="31199" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30675" e_stop="31199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTTTCAATCTTAGAAGGATCCACCATCACTCCTTCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAACACGATCACGAAGAGGTCCAAATATGGCTTAAAAATACCATTCATCAAGCTCATGAACGCAGCAGAGGCATTCGTAAGACCAAAAGACATCACCACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCTGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAAT</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="30446" stop="31723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30746" g_stop="31425" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30746" e_stop="31425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTTTCAATCTTAGAAGGATCCACCATCACTCCTTCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAACACGATCACGAAGAGGTCCAAATATGGCTTAAAAATACCATTCATCAAGCTCATGAACGCAGCAGAGGCATTCGTAAGACCAAAAGACATCACCACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCTGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACTTTATTCAGTTGTCTGTAATCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGCA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="30446" stop="31404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30746" g_stop="31104" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30746" e_stop="31104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTTTCAATCTTAGAAGGATCCACCATCACTCCTTCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAACACGATCACGAAGAGGTCCAAATATGGCTTAAAAATACCATTCATCAAGCTCATGAACGCAGCAGAGGCATTCGTAAGACCAAAAGACATCACCACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="30895" stop="32153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31195" g_stop="31853" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31195" e_stop="31853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACTTTATTCAGTTGTCTGTAATCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGCACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTCGTCACCCTCCCACACTAACAGATCTGTCCCAGGCTTGGCTAACGTCACGGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGTCAAGTCATACCCAGAATTACATCGAAATCATACATTGCCAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCACACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="30964" stop="32326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31264" g_stop="32026" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31264" e_stop="32026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGCACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTCGTCACCCTCCCACACTAACAGATCTGTCCCAGGCTTGGCTAACGTCACGGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGTCAAGTCATACCCAGAATTACATCGAAATCATACATTGCCAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCACACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCGAAATGAGGAAGATACATAAGAAAACGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAAATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGC-AAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="30964" stop="32224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31264" g_stop="31924" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31264" e_stop="31924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGCACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTCGTCACCCTCCCACACTAACAGATCTGTCCCAGGCTTGGCTAACGTCACGGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGTCAAGTCATACCCAGAATTACATCGAAATCATACATTGCCAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCACACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="31367" stop="32294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31667" g_stop="31998" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31667" e_stop="31998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACGGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGTCAAGTCATACCCAGAATTACATCGAAATCATACATTGCCAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCACACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCGAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGC-AAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="31574" stop="32733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31874" g_stop="32433" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31874" e_stop="32433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCGAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAAATTACCTGTGATGACAGCATCAGATGTCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGTCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGAGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGATTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGC-AAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353805" ref_strand="+" ref_description="SGN-E353805 [cTOS-10-C24]">
      <seq>ggatcaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctaaagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="31661" stop="32794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31961" g_stop="32494" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E353805" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31961" e_stop="32494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAAATTACCTGTGATGACAGCATCAGATGTCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGTCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGAGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGATTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</genome_strand>
        <mrna_strand>GGATC-AACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAAAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392027" ref_strand="+" ref_description="SGN-E392027 [TUS-24-O2](-)">
      <seq>cagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggactggatcttcttcttcaagtcttgatgccttgaacttccggcatggactagcttcttatgtatttttagcttttagactactcttagtttagtcatttgatcgtagatgttcttgtggtgatgacttccagattttggggaataatagatgttgaattttagaagttaatgaattggtctgtatttaatgagtttaagtcttccacattactttctgttgatattatattgaaatgttaaggttagattggttggttcgctcacataggagggtaagtgtgggtgccagtcgcaacccggttttggtcgtgacaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacgagtctagtagagtcttaaggaacggtagggggatgcctttacttttccttgagaggctataagacttttggaaaattccattctttcttctttcgtgctattacttgggtccaattggtatctaggtgatacaaattggtatctgaccatcttcactctatttcgcagatggttagaactagagcaacgactacgccagcatcaacaccagcaccggcgggacagggtgcgactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="-" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="33563" stop="32296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33263" g_stop="32603" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="-" ref_id="SGN-E392027" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33263" e_stop="32603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAAGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTCTTAGA-AACTCTTAGAATTAGT-AGTTTAAGGTAGATGTTCTTGTGATGATGACTTCCAGGTTTT-GGGAATAATAGATGTTGAATATTGATAGTTATTGAATTTG-CTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGTTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTTGCGATCCGATTTGGGTCGTGAAAAATTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTACAAGACTTTAGAAAAATTCCATTCTTTCTTTCTTTCGTGCTATTACTTGGATCCAATTGGTATCTAGGTGATACAAATTGGTATCTAACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGATCAACGACTGCGCCAACACCAAC</genome_strand>
        <mrna_strand>CAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACT-ACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTT-TTAGACTACTCTTAG-TTTAGTCATTTGATCGTAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTGTATTTAATGAGTTTAAGTCTTCCACATTACTTTCTGTTGATATTATATTGAAATGTTAAGG-TTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGGTTTTGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTTGGAAAATTCCATTCTTTC-TTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351546" ref_strand="+" ref_description="SGN-E351546 [cTOS-12-I18]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttggtatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacataggagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacaagtctagtagagtcttaaggaacggtagggggacgcttttacttttccttgagaggctataagactttaggaaaacttcactctttcattctttctttcgtgctactacttcgagtcaattggtatctaagcgatacgaattggtatctgaccatnctcactctcttgccagatgggtagaactagagcaacgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="-" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="33644" stop="32317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33344" g_stop="32617" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="-" ref_id="SGN-E351546" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33344" e_stop="32617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCGATGATATCTACTCAGTACTCGTGTTTTGTACTGACCCTTACTTTTATGTTTTTCTTCTTGTTATTTTTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAAGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGT-A-TTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAGGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTTGCTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGTTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTTGCGATCC-GATTTGGGTCGTGA-AAAATTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTACAAGACTTTA-GAAAAATT--C-CATTCTTTCTTTCTTTCGTGCTATTACTTGGATCCAATTGGTATCTAGGTGATACAAATTGGTATCTAACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGATCAACGACT</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGGTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTTAATAATAGTAGTTATTG-A-----TTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCTTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAACTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTCGAGTCAATTGGTATCTAAGCGATACGAATTGGTATCTGACCATNCTCACTCTCTTGC-CAGATGGGTAGAACTAGAGCAACGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356696" ref_strand="+" ref_description="SGN-E356696 [cTOS-21-K7]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttgttatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacatangagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacaagtctagtagagtcttaaggaacggtagggggacgcttttacttttccttgagaggctataagactttaggaaaacttcactctttcattctttctttcgtgctactacttgagtccaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="-" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="33644" stop="32404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33344" g_stop="32692" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="-" ref_id="SGN-E356696" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33344" e_stop="32692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCGATGATATCTACTCAGTACTCGTGTTTTGTACTGACCCTTACTTTTATGTTTTTCTTCTTGTTATTTTTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAAGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGT-A-TTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAGGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTTGCTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGTTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTTGCGATCC-GATTTGGGTCGTGA-AAAATTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTACAAGACTTTA-GAAAAATT--C-CATTCTTTCTTTCTTTCGTGCTATTACTTGGATCCAATTG</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTTAATA---ATAG-TAGT-TA-TTGATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATANGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCTTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAACTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356206" ref_strand="+" ref_description="SGN-E356206 [cTOS-20-F19]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttgttatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacataggagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattagggtcgttggtctcatcacacaagaacaagtctagtagagtcttaagggacggtanggggacgcttttacttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="-" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="33644" stop="32463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33344" g_stop="32763" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="-" ref_id="SGN-E356206" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33344" e_stop="32763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCGATGATATCTACTCAGTACTCGTGTTTTGTACTGACCCTTACTTTTATGTTTTTCTTCTTGTTATTTTTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAAGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGT-A-TTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAGGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTTGCTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGTTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTTGCGATCC-GATTTGGGTCGTGA-AAAATTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTC</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTTAATA---ATAG-TAGT-TA-TTGATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGGTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGGACGGTANGGGGACGCTTTTACTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253427" ref_strand="+" ref_description="SGN-E253427 [cLEG-24-L5]">
      <seq>tggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctggttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="-" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="44380" stop="43172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44080" g_stop="43472" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="-" ref_id="SGN-E253427" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44080" e_stop="43472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTCGGATTACTTCTTGTATT-T-TATGTTTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACCTTATAAATACAGGTTACTATAAGAATAACAATCTTAAG-AAATTTA-AAAGTTTCTGTATTTGAGGTTTTTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAATAACTTTATCGTTTAATCATAAACAGTTTGTGTAAAGATTTGTTATTTACTGTTAGTATTTCAAATACTTAACTTATCTGTCATTTGTGACAGAAAAAAATGACTGATTCAAGTCAAATAAATATTGGAACAGTAAGTGCTGCTACAACATCGGTTGCACATAATCGTTCAAATACTGCCTTAGAGCCGACTGAGAAACCTACAAAGTTTTCTGGAGTCAACTTTAAGAGATGAAAACAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTTATATCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTTGTGTAAAAATTATATTTTGAGT</genome_strand>
        <mrna_strand>TGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGGTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGA-TTTTTTGTGTAAAAATTATATTTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261066" ref_strand="+" ref_description="SGN-E261066 [cLEG-65-C11]">
      <seq>tttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcataaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagatttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="-" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="44497" stop="43195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44197" g_stop="43495" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="-" ref_id="SGN-E261066" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44197" e_stop="43495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGGTACCGCTATTTCTTTAACATGTTTAATTTGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGATACACAGTAGTTTCTGTGGACTCGGATTACTTCTTGTATT-T-TATGTTTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACCTTATAAATACAGGTTACTATAAGAATAACAATCTTAAG-AAATTTA-AAAGTTTCTGTATTTGAGGTTTTTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAATAACTTTATCGTTTAATCATAAACAGTTTGTGTAAAGATTTGTTATTTACTGTTAGTATTTCAAATACTTAACTTATCTGTCATTTGTGACAGAAAAAAATGACTGATTCAAGTCAAATAAATATTGGAACAGTAAGTGCTGCTACAACATCGGTTGCACATAATCGTTCAAATACTGCCTTAGAGCCGACTGAGAAACCTACAAAGTTTTCTGGAGTCAACTTTAAGAGATGAAAACAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTTATATCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTT</genome_strand>
        <mrna_strand>TTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCATAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGATTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258047" ref_strand="+" ref_description="SGN-E258047 [cLEG-48-K15]">
      <seq>ttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="-" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="44269" stop="43227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43970" g_stop="43527" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="-" ref_id="SGN-E258047" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43970" e_stop="43527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAAAGTTTCTGTATTTGAGGTTTTTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAATAACTTTATCGTTTAATCATAAACAGTTTGTGTAAAGATTTGTTATTTACTGTTAGTATTTCAAATACTTAACTTATCTGTCATTTGTGACAGAAAAAAATGACTGATTCAAGTCAAATAAATATTGGAACAGTAAGTGCTGCTACAACATCGGTTGCACATAATCGTTCAAATACTGCCTTAGAGCCGACTGAGAAACCTACAAAGTTTTCTGGAGTCAACTTTAAGAGATGAAAACAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTTATATCAGATGAAACTCCGGCTGATGAACGATTCTTG</genome_strand>
        <mrna_strand>TTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263584" ref_strand="+" ref_description="SGN-E263584 [cLEG-60-L13]">
      <seq>tgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="-" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="44537" stop="43234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44237" g_stop="43534" g_length="704"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="-" ref_id="SGN-E263584" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44237" e_stop="43534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTTGTTGTTGTTCTCAAGTTCGCTGAAGTTAAAGAAATTTGAGGTACCGCTATTTCTTTAACATGTTTAATTTGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGATACACAGTAGTTTCTGTGGACTCGGATTACTTCTTGTATT-T-TATGTTTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACCTTATAAATACAGGTTACTATAAGAATAACAATCTTAAG-AAATTTA-AAAGTTTCTGTATTTGAGGTTTTTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAATAACTTTATCGTTTAATCATAAACAGTTTGTGTAAAGATTTGTTATTTACTGTTAGTATTTCAAATACTTAACTTATCTGTCATTTGTGACAGAAAAAAATGACTGATTCAAGTCAAATAAATATTGGAACAGTAAGTGCTGCTACAACATCGGTTGCACATAATCGTTCAAATACTGCCTTAGAGCCGACTGAGAAACCTACAAAGTTTTCTGGAGTCAACTTTAAGAGATGAAAACAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTTATATCAGATGAAACTCCGGCTGATGAACG</genome_strand>
        <mrna_strand>TGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276669" ref_strand="+" ref_description="SGN-E276669 [cLEN-14-A16]">
      <seq>ttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="-" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="44496" stop="43265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44196" g_stop="43565" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="-" ref_id="SGN-E276669" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44196" e_stop="43565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGGTACCGCTATTTCTTTAACATGTTTAATTTGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGATACACAGTAGTTTCTGTGGACTCGGATTACTTCTTGTATT-T-TATGTTTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACCTTATAAATACAGGTTACTATAAGAATAACAATCTTAAG-AAATTTA-AAAGTTTCTGTATTTGAGGTTTTTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAATAACTTTATCGTTTAATCATAAACAGTTTGTGTAAAGATTTGTTATTTACTGTTAGTATTTCAAATACTTAACTTATCTGTCATTTGTGACAGAAAAAAATGACTGATTCAAGTCAAATAAATATTGGAACAGTAAGTGCTGCTACAACATCGGTTGCACATAATCGTTCAAATACTGCCTTAGAGCCGACTGAGAAACCTACAAAGTTTTCTGGAGTCAACTTTAAGAGATGAAAACAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTG</genome_strand>
        <mrna_strand>TTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273518" ref_strand="+" ref_description="SGN-E273518 [cLEN-6-E15]">
      <seq>ggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="-" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="44635" stop="43387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44335" g_stop="43687" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="-" ref_id="SGN-E273518" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44335" e_stop="43687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTCAATTTTCGATTTTTTAAACACTGAAAA-TTTTCCTTCTCTGCATTTATTTTTCTCTCCAATAAAATCAAACTGTCGATTGACTGAGTCTGTATGACTTGTTGTTGTTCTCAAGTTCGCTGAAGTTAAAGAAATTTGAGGTACCGCTATTTCTTTAACATGTTTAATTTGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGATACACAGTAGTTTCTGTGGACTCGGATTACTTCTTGTATT-T-TATGTTTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACCTTATAAATACAGGTTACTATAAGAATAACAATCTTAAGAAA-TTTA-AAAGTTTCTGTATTTGAGGTTTTTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAATAACTTTATCGTTTAATCATAAACAGTTTGTGTAAAGATTTGTTATTTACTGTTAGTATTTCAAATACTTAACTTATCTGTCATTTGTGACAGAAAAAAATGACTGATTCAAGTCAAATAAATATTGGAACAGTAAGTGCTGCTACAACATCGGTTGCACATAATCGTTCAAATACTGC</genome_strand>
        <mrna_strand>GGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262710" ref_strand="+" ref_description="SGN-E262710 [cLEG-63-E14]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="-" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="44665" stop="43466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44366" g_stop="43766" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="-" ref_id="SGN-E262710" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44366" e_stop="43766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACGTTTCTTGCTG-AAATTGCTATAAAAGGAAGTCAATTTTCGATTTTTTAAACACTGAAAA-TTTTCCTTCTCTGCATTTATTTTTCTCTCCAATAAAATCAAACTGTCGATTGACTGAGTCTGTATGACTTGTTGTTGTTCTCAAGTTCGCTGAAGTTAAAGAAATTTGAGGTACCGCTATTTCTTTAACATGTTTAATTTGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGATACACAGTAGTTTCTGTGGACTCGGATTACTTCTTGTATT-T-TATGTTTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACCTTATAAATACAGGTTACTATAAGAATAACAATCTTAAG-AAATTTA-AAAGTTTCTGTATTTGAGGTTTTTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAATAACTTTATCGTTTAATCATAAACAGTTTGTGTAAAGATTTGTTATTTACTGTTAGTATTTCAAATACTTAACTTATCTGTCATTTGTGACAGAAAAAAA</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369760" ref_strand="+" ref_description="SGN-E369760 [TUS-25-O3]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="-" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="44665" stop="43495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44366" g_stop="43795" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="-" ref_id="SGN-E369760" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44366" e_stop="43795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACGTTTCTTGCTG-AAATTGCTATAAAAGGAAGTCAATTTTCGATTTTTTAAACACTGAAAA-TTTTCCTTCTCTGCATTTATTTTTCTCTCCAATAAAATCAAACTGTCGATTGACTGAGTCTGTATGACTTGTTGTTGTTCTCAAGTTCGCTGAAGTTAAAGAAATTTGAGGTACCGCTATTTCTTTAACATGTTTAATTTGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGATACACAGTAGTTTCTGTGGACTCGGATTACTTCTTGTATT-T-TATGTTTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACCTTATAAATACAGGTTACTATAAGAATAACAATCTTAAG-AAATTTA-AAAGTTTCTGTATTTGAGGTTTTTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAATAACTTTATCGTTTAATCATAAACAGTTTGTGTAAAGATTTGTTATTTACTGTTAGTATTTCAAATACTTA</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255327" ref_strand="+" ref_description="SGN-E255327 [cLEG-30-E2]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgatttttgaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaacttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="-" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="44665" stop="43558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44366" g_stop="43858" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="-" ref_id="SGN-E255327" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44366" e_stop="43858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACGTTTCTTGCTG-AAATTGCTATAAAAGGAAGTCAATTTTCGATTTTTTAAACACTGAAAA-TTTTCCTTCTCTGCATTTATTTTTCTCTCCAATAAAATCAAACTGTCGATTGACTGAGTCTGTATGACTTGTTGTTGTTCTCAAGTTCGCTGAAGTTAAAGAAATTTGAGGTACCGCTATTTCTTTAACATGTTTAATTTGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGATACACAGTAGTTTCTGTGGACTCGGATTACTTCTTGTATT-T-TATGTTTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACCTTATAAATACAGGTTACTATAAGAATAACAATCTTAAG-AAATTTA-AAAGTTTCTGTATTTGAGGTTTTTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAATAACTTTA</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTGAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262800" ref_strand="+" ref_description="SGN-E262800 [cLEG-63-P6]">
      <seq>cttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="-" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="44656" stop="43664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44356" g_stop="43964" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="-" ref_id="SGN-E262800" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44356" e_stop="43964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTG-AAATTGCTATAAAAGGAAGTCAATTTTCGATTTTTTAAACACTGAAAA-TTTTCCTTCTCTGCATTTATTTTTCTCTCCAATAAAATCAAACTGTCGATTGACTGAGTCTGTATGACTTGTTGTTGTTCTCAAGTTCGCTGAAGTTAAAGAAATTTGAGGTACCGCTATTTCTTTAACATGTTTAATTTGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGATACACAGTAGTTTCTGTGGACTCGGATTACTTCTTGTATT-T-TATGTTTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACCTTATAAATACAGGTTACTATAAGAATAACAATCTTAAGAAATTTAAAA</genome_strand>
        <mrna_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258205" ref_strand="+" ref_description="SGN-E258205 [cLEG-49-B23]">
      <seq>aatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctggttctgtttattaactttataaataaaaggtattataagagtaacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="-" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="44604" stop="43678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44304" g_stop="43978" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="-" ref_id="SGN-E258205" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44304" e_stop="43978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTTCCTTCTCTGCATTTATTTTTCTCTCCAATAAAATCAAACTGTCGATTGACTGAGTCTGTATGACTTGTTGTTGTTCTCAAGTTCGCTGAAGTTAAAGAAATTTGAGGTACCGCTATTTCTTTAACATGTTTAATTTGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGATACACAGTAGTTTCTGTGGACTCGGATTACTTCTTGTATT-T-TATGTTTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACCTTATAAATACAGGTTACTATAAGAATAACAATCT</genome_strand>
        <mrna_strand>AATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGGTTCTGTTTATTAACTTTATAAATAAAAGGTATTATAAGAGTAACAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322088" ref_strand="+" ref_description="SGN-E322088 [cTOB-29-N13]">
      <seq>cgagtggctgaatacaaattgttgggcgcccgcgaagtagggattaaaagtcaaattcctacaaaaatattcgctaaaataagtcccaataaaaccaatatatatagcagtattgcgttcgccgtttcaactccattcacccctctttctcatcatcatctcctcgttcttctcctctacacgaggcgagtcgaacgaaggacttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacnattaaggaaagaaggtttgggtctttatggagaagaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45697" stop="48743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45997" g_stop="46196" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="711" r_length="511" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48575" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="727" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E322088" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45997" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGTGGCTGAATACAAATTGTTGGGCGCCCGCGAAGTAGGGATTAAAAGTCAAATTCCTACAAAAATATTCGCTAAAATAAGTCCCAATAAAACCAATATATATAGCAGTATTGCGTTCGCCGTTTCAACTCCATTCACCCCTCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCAT</genome_strand>
        <mrna_strand>CGAGTGGCTGAATACAAATTGTTGGGCGCCCGCGAAGTAGGGATTAAAAGTCAAATTCCTACAAAAATATTCGCTAAAATAAGTCCCAATAAAACCAATATATATAGCAGTATTGCGTTCGCCGTTTCAACTCCATTCACCCCTCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACNATTAAGGAAAGAAGGTTTGGGTCTTTATGGAGAAGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267286" ref_strand="+" ref_description="SGN-E267286 [cLEI-4-L16]">
      <seq>aaaaatattcgctaaaataagtcccaataaaaccaatatatatagcagtattgcgttcgccgtttcaactccattcacccctctttctcatcatcatctcctcgttcttctcctctacacgaggcgagtcgaacgaaggacttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45759" stop="48614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46059" g_stop="46196" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48314" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="521" r_length="383" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E267286" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46059" e_stop="46196"/>
          <exon e_start="47932" e_stop="48314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATATTCGCTAAAATAAGTCCCAATAAAACCAATATATATAGCAGTATTGCGTTCGCCGTTTCAACTCCATTCACCCCTCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCA</genome_strand>
        <mrna_strand>AAAAATATTCGCTAAAATAAGTCCCAATAAAACCAATATATATAGCAGTATTGCGTTCGCCGTTTCAACTCCATTCACCCCTCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619533" ref_strand="+" ref_description="SGN-E619533 [70224]">
      <seq>aaaaccaatatatatagcagtgttgcattcgccgtttcgactcctttcacccctctttctcatcatcatctcctcgttcttctcctctccatcactactttcgaggcgagttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggagttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggggtttctgctgctgtatcaaagacagctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctgggaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggtttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45787" stop="48930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46087" g_stop="46181" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46182" i_stop="46822" i_length="641">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.698" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46823" g_stop="46834" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="105" r_length="12" r_score="0.500"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46835" i_stop="47800" i_length="966">
            <donor d_prob="0.628" d_score="0.00"/>
            <acceptor a_prob="0.768" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47801" g_stop="47815" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="120" r_length="15" r_score="0.467"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47816" i_stop="47931" i_length="116">
            <donor d_prob="0.548" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="630" r_length="510" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48560" g_stop="48630" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="701" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E619533" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E619533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46087" e_stop="46181"/>
          <exon e_start="46823" e_stop="46834"/>
          <exon e_start="47801" e_stop="47815"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCAATATATATAGCAGTATTGCGTTCGCCGTTTCAACTCCATTCACCCCTCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTG</genome_strand>
        <mrna_strand>AAAACCAATATATATAGCAGTGTTGCATTCGCCGTTTCGACTCCTTTCACCCCTCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCT-C-CATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACTTTCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGTTGAACGAAG....................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGAGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGGGTTTCTGCTGCTGTATCAAAGACAGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGGAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGG-TTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590607" ref_strand="+" ref_description="SGN-E590607 [44207]">
      <seq>atagcagtgttgccttcngccgtttctactccttttcacccctctttctcatcatcatctcctcggttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaaggactactttcaagagactcttcaattcaagaaggaccgtgatggctactggaaagtggttttgctggcaaacctttggctcaggtggtgctggctggtggcttctttctttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45800" stop="48986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46100" g_stop="46181" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.829"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46182" i_stop="46822" i_length="641">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.698" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46823" g_stop="46834" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="95" r_length="11" r_score="0.417"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46835" i_stop="47800" i_length="966">
            <donor d_prob="0.628" d_score="0.00"/>
            <acceptor a_prob="0.768" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47801" g_stop="47815" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="110" r_length="15" r_score="0.467"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47816" i_stop="47931" i_length="116">
            <donor d_prob="0.548" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="621" r_length="511" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48560" g_stop="48633" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="696" r_length="75" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E590607" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46100" e_stop="46181"/>
          <exon e_start="46823" e_stop="46834"/>
          <exon e_start="47801" e_stop="47815"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCAGTATTGCGTTC-GCCGTTTCAACTCC-ATTCACCCCTCTTTCTCATCATCATCTCCTC-GTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTC-AAGGACTAC-TTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAA</genome_strand>
        <mrna_strand>ATAGCAGTGTTGCCTTCNGCCGTTTCTACTCCTTTTCACCCCTCTTTCTCATCATCATCTCCTCGGTTCTTCTCCTCTCCATCA-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-CTACTTTCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGTCGAACGAAG....................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAAGGACTACTTTCAAGAGACTCTTCAA-TTCAAGAAGGACCGTGATGGCTACTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448285" ref_strand="+" ref_description="SGN-E448285 [cSTS-2-D17]">
      <seq>ttgcattcgccgtttcgactcctttcacccctctttctcatcatcatctcctcgttcttctcctctccatcactactttcgaggcgagttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccggaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggacttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45809" stop="48907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46109" g_stop="46181" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46182" i_stop="46822" i_length="641">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.698" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46823" g_stop="46834" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="83" r_length="12" r_score="0.500"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46835" i_stop="47800" i_length="966">
            <donor d_prob="0.628" d_score="0.00"/>
            <acceptor a_prob="0.768" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47801" g_stop="47815" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="98" r_length="15" r_score="0.467"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47816" i_stop="47931" i_length="116">
            <donor d_prob="0.548" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="609" r_length="511" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48560" g_stop="48607" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="657" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E448285" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46109" e_stop="46181"/>
          <exon e_start="46823" e_stop="46834"/>
          <exon e_start="47801" e_stop="47815"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCGTTCGCCGTTTCAACTCCATTCACCCCTCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTC</genome_strand>
        <mrna_strand>TTGCATTCGCCGTTTCGACTCCTTTCACCCCTCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCT-C-CATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACTTTCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGTTGAACGAAG....................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCGGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGACTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728446" ref_strand="+" ref_description="SGN-E728446 [LA17DD07]">
      <seq>cttctccgtttcaactccattcacccctctttctcatcatcatctcctcgttcttctcctctacacgaggcgagtcgaacgaaggacttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcgagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcangaggtgctgctggtgcttcctcattgttctttgtctactccttgaactatgctcgtacccgtcttgctaatgatgccaaaggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45814" stop="49043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46113" g_stop="46196" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="595" r_length="511" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48743" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="780" r_length="185" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E728446" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46113" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCGTTTCAACTCCATTCACCCCTCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCC-AAGGCTT</genome_strand>
        <mrna_strand>CTTCTCCGTTTCAACTCCATTCACCCCTCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCGAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCANGAGGTGCTGCTGGTGCTTCCTCATTGTTCTTTGTCTACTCCTTGAACTATGCTCGTACCCGTCTTGCTAATGATGCCAAAGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745710" ref_strand="+" ref_description="SGN-E745710 [GI|47105160]">
      <seq>ggccgtttcaactccattcacccctctttctcatcatcatctcctcgttcttctcctctacacgaggcgagtcgaacgaaggacttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagctttcgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggcgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgcacttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcctaagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttggtgttacatttgagtattcagttggggagacaattatcattattccttttgcctttttttttgtaataattcgaaaaatcttagagtgggtcaaagcttaaaaaccccacactcgtttcccttgttgaagggttattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaatcttttgataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45817" stop="50151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46116" g_stop="46196" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="592" r_length="511" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="964" r_length="372" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49291" g_stop="49845" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="965" r_stop="1518" r_length="554" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1519" polyA_stop="1533"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E745710" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1519</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46116" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGTTTCAACTCCATTCACCCCTCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAA</genome_strand>
        <mrna_strand>GGCCGTTTCAACTCCATTCACCCCTCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTCGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCC-TTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718010" ref_strand="+" ref_description="SGN-E718010 [FC03BF01]">
      <seq>ggcggccaatcggccgaattactccattcacccctctttctcatcatcatctcctcgttcttctcctctacacgaggcgagtcgaacgaaggacttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgggtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45826" stop="49044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46128" g_stop="46196" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="91" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="602" r_length="511" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48744" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="787" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E718010" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46128" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTCACCCCTCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTC</genome_strand>
        <mrna_strand>TCCATTCACCCCTCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGGGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358680" ref_strand="+" ref_description="SGN-E358680 [cLHT-22-L23]">
      <seq>cctctttctcatcatcatctcctcgttcttctcctctacacgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcatttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45838" stop="48712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46138" g_stop="46196" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48412" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="540" r_length="481" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E358680" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46138" e_stop="46196"/>
          <exon e_start="47932" e_stop="48412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACT</genome_strand>
        <mrna_strand>CCTCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCATTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315029" ref_strand="+" ref_description="SGN-E315029 [cTOB-4-I20]">
      <seq>cctctttctcatcatcatctcctcgttcttctcctctacacgaggcgagtcgaacgaaggacttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaagcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45838" stop="48654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46138" g_stop="46196" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48354" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="482" r_length="423" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E315029" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46138" e_stop="46196"/>
          <exon e_start="47932" e_stop="48354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGA</genome_strand>
        <mrna_strand>CCTCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAAGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340933" ref_strand="+" ref_description="SGN-E340933 [cTOF-5-C16]">
      <seq>ctctttctcatatcatctcctcgttcttctcctctacacgaggcgagtcgaacgaaggacttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggnaagtggtttgctggaaaccttgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45839" stop="48957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46139" g_stop="46196" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="568" r_length="511" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48657" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="667" r_length="99" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E340933" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46139" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGG-AAGTGGTTTGCTGGAAACCTTGCATC</genome_strand>
        <mrna_strand>CTCTTTCTCAT-ATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGNAAGTGGTTTGCTGGAAACCTTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408131" ref_strand="+" ref_description="SGN-E408131 [PPI-10-M11]">
      <seq>ctctttctcatcatcatctcctcgttcttctcctctccatcactactttcgaggcgagttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccggaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggacttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcangccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaggaccgtgatggctactggaagtggtttgctggcaacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45839" stop="48951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46139" g_stop="46181" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46182" i_stop="46822" i_length="641">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.698" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46823" g_stop="46834" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="53" r_length="12" r_score="0.500"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46835" i_stop="47800" i_length="966">
            <donor d_prob="0.628" d_score="0.00"/>
            <acceptor a_prob="0.768" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47801" g_stop="47815" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="68" r_length="15" r_score="0.467"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47816" i_stop="47931" i_length="116">
            <donor d_prob="0.548" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="579" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48560" g_stop="48652" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="671" r_length="92" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E408131" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46139" e_stop="46181"/>
          <exon e_start="46823" e_stop="46834"/>
          <exon e_start="47801" e_stop="47815"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTT</genome_strand>
        <mrna_strand>CTCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCT-C-CATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACTTTCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGTTGAACGAAG....................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCGGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGACTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAN.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAG-AGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345048" ref_strand="+" ref_description="SGN-E345048 [cTOF-22-J10]">
      <seq>tctttctcatcatcatctcctcgttcttctcctctacacgaggcgagtcgaacgaaggacttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaagaagaagggttgtgggtctttatggagaggaaacactgctaatgttatccgatatgtccccactcangcccctgactttgcattcagggactactttcagagactcttcaacttcaagaaggaccgtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45840" stop="48923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46140" g_stop="46196" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="569" r_length="512" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.94"/>
            <acceptor a_prob="0.931" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48623" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="633" r_length="64" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E345048" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46140" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAA-GGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATG</genome_strand>
        <mrna_strand>TCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAAGAAGAAGGGTTGTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGATATGTCCCCACTCAN.....................................................................................................................GCCCCTGACTTTGCATTCAGGGACTACTTTCAGAGACTCTTCAACTTCAAGAAGGACCGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274158" ref_strand="+" ref_description="SGN-E274158 [cLEN-8-M16]">
      <seq>tctttctcatcatcatctcctcgttcttctcctctacacgaggcgagtcgaacgaaggacttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45840" stop="48654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46140" g_stop="46196" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48354" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="480" r_length="423" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E274158" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46140" e_stop="46196"/>
          <exon e_start="47932" e_stop="48354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGA</genome_strand>
        <mrna_strand>TCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336326" ref_strand="+" ref_description="SGN-E336326 [cTOE-10-H17]">
      <seq>tctttctcatcatcatctcctcgttcttctcctctacacgaggcgagtcgaacgaaggacttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45840" stop="48613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46140" g_stop="46196" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48313" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="439" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E336326" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46140" e_stop="46196"/>
          <exon e_start="47932" e_stop="48313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTC</genome_strand>
        <mrna_strand>TCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443687" ref_strand="+" ref_description="SGN-E443687 [cSTA-39-O10]">
      <seq>tctttctcatcatcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagataaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttgtggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45840" stop="48458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46140" g_stop="46181" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.881"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46182" i_stop="46822" i_length="641">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.698" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46823" g_stop="46834" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="52" r_length="12" r_score="0.500"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46835" i_stop="47800" i_length="966">
            <donor d_prob="0.628" d_score="0.00"/>
            <acceptor a_prob="0.768" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47801" g_stop="47815" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="67" r_length="15" r_score="0.467"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47816" i_stop="47931" i_length="116">
            <donor d_prob="0.548" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47932" g_stop="48158" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="294" r_length="227" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E443687" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46140" e_stop="46181"/>
          <exon e_start="46823" e_stop="46834"/>
          <exon e_start="47801" e_stop="47815"/>
          <exon e_start="47932" e_stop="48158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATG</genome_strand>
        <mrna_strand>TCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCT-C-CATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACTTTCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGTCGAACGAAG....................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGATAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTGTGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575696" ref_strand="+" ref_description="SGN-E575696 [35360]">
      <seq>ctttctcatcatcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttgtggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggattggcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggtttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45841" stop="48953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46141" g_stop="46181" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46182" i_stop="46822" i_length="641">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.698" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46823" g_stop="46834" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="51" r_length="12" r_score="0.500"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46835" i_stop="47800" i_length="966">
            <donor d_prob="0.628" d_score="0.00"/>
            <acceptor a_prob="0.768" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47801" g_stop="47815" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="66" r_length="15" r_score="0.467"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47816" i_stop="47931" i_length="116">
            <donor d_prob="0.548" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="576" r_length="510" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48560" g_stop="48653" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="670" r_length="94" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E575696" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46141" e_stop="46181"/>
          <exon e_start="46823" e_stop="46834"/>
          <exon e_start="47801" e_stop="47815"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTG</genome_strand>
        <mrna_strand>CTTTCTCATCATCATCTCCTCGTTCTTCTCCTCT-C-CATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACTTTCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGTCGAACGAAG....................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTGTGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTGGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGG-TTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438948" ref_strand="+" ref_description="SGN-E438948 [cSTA-10-G12]">
      <seq>ctttctcatcatcatctcctcgttcttctcctctccatcactactttcgaggcgagttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggagttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggggtttctgctgctgtatcaaagacagctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgaagatgctcaaggctgggaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45841" stop="48672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46141" g_stop="46181" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46182" i_stop="46822" i_length="641">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.698" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46823" g_stop="46834" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="51" r_length="12" r_score="0.500"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46835" i_stop="47800" i_length="966">
            <donor d_prob="0.628" d_score="0.00"/>
            <acceptor a_prob="0.768" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47801" g_stop="47815" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="66" r_length="15" r_score="0.467"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47816" i_stop="47931" i_length="116">
            <donor d_prob="0.548" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47932" g_stop="48372" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="508" r_length="442" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E438948" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46141" e_stop="46181"/>
          <exon e_start="46823" e_stop="46834"/>
          <exon e_start="47801" e_stop="47815"/>
          <exon e_start="47932" e_stop="48372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATG-AGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAAT</genome_strand>
        <mrna_strand>CTTTCTCATCATCATCTCCTCGTTCTTCTCCTCT-C-CATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACTTTCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGTTGAACGAAG....................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGAGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGGGTTTCTGCTGCTGTATCAAAGACAGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAAGATGCTCAAGGCTGGGAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475542" ref_strand="+" ref_description="SGN-E475542 [cSTB-40-K4]">
      <seq>ctttctcatcatcatctcctcgttcttctcctctccatcactactttcgaggcgagttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccggaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggacttgcagcttttgccactgactttctcatgggtggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45841" stop="48533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46141" g_stop="46181" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46182" i_stop="46822" i_length="641">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.698" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46823" g_stop="46834" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="51" r_length="12" r_score="0.500"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46835" i_stop="47800" i_length="966">
            <donor d_prob="0.628" d_score="0.00"/>
            <acceptor a_prob="0.768" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47801" g_stop="47815" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="66" r_length="15" r_score="0.467"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47816" i_stop="47931" i_length="116">
            <donor d_prob="0.548" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47932" g_stop="48233" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="368" r_length="302" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E475542" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46141" e_stop="46181"/>
          <exon e_start="46823" e_stop="46834"/>
          <exon e_start="47801" e_stop="47815"/>
          <exon e_start="47932" e_stop="48233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAG</genome_strand>
        <mrna_strand>CTTTCTCATCATCATCTCCTCGTTCTTCTCCTCT-C-CATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACTTTCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGTTGAACGAAG....................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCGGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGACTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446624" ref_strand="+" ref_description="SGN-E446624 [cSTA-22-E6]">
      <seq>ttctcatcatcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45843" stop="48886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46143" g_stop="46181" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46182" i_stop="46822" i_length="641">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.698" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46823" g_stop="46834" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="49" r_length="12" r_score="0.500"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46835" i_stop="47800" i_length="966">
            <donor d_prob="0.628" d_score="0.00"/>
            <acceptor a_prob="0.768" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47801" g_stop="47815" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="64" r_length="15" r_score="0.467"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47816" i_stop="47931" i_length="116">
            <donor d_prob="0.548" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="575" r_length="511" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48560" g_stop="48586" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="602" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E446624" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46143" e_stop="46181"/>
          <exon e_start="46823" e_stop="46834"/>
          <exon e_start="47801" e_stop="47815"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTAC</genome_strand>
        <mrna_strand>TTCTCATCATCATCTCCTCGTTCTTCTCCTCT-C-CATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACTTTCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGTCGAACGAAG....................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298473" ref_strand="+" ref_description="SGN-E298473 [cLET-41-M7]">
      <seq>tctcatcatcatctcctcgttcttctcctctacacgaggcgagtcgaacgaaggacttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45844" stop="48738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46144" g_stop="46196" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48438" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="560" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E298473" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46144" e_stop="46196"/>
          <exon e_start="47932" e_stop="48438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCAC</genome_strand>
        <mrna_strand>TCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736424" ref_strand="+" ref_description="SGN-E736424 [LC05CH07]">
      <seq>cgcatcatcatctcctcgttcttctcctctacacgaggcgagtcgaacgaaggacttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaagcgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgtgggtatcattgtttaccgtggtttgtactttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45845" stop="49186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46145" g_stop="46196" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="563" r_length="511" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48886" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="890" r_length="327" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E736424" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>890</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46145" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGA</genome_strand>
        <mrna_strand>CGCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAAGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTGGGTATCATTGTTTACCGTGGTTTGTACTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267373" ref_strand="+" ref_description="SGN-E267373 [cLEI-8-C7]">
      <seq>catcatcatctcctcgttcttctcctctacacgaggcgagtcgaacgaaggacttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45847" stop="48613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46147" g_stop="46196" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48313" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="432" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E267373" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46147" e_stop="46196"/>
          <exon e_start="47932" e_stop="48313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTC</genome_strand>
        <mrna_strand>CATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727916" ref_strand="+" ref_description="SGN-E727916 [LA16AE09]">
      <seq>atcaccttctcctcgttcttctcctctacacgaggcgagtcgaacgaaggacttttttaaacgttgcaatgacagatatgaatcaacatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaagatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccgaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggngcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaaaggaggcgagaggcagttcaatggtttggttgatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45848" stop="49088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46148" g_stop="46196" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="560" r_length="511" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48788" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="789" r_length="229" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E727916" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46148" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCT</genome_strand>
        <mrna_strand>ATCACCTTCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAACATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAAGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCGAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGNGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAAGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348255" ref_strand="+" ref_description="SGN-E348255 [cTOF-27-I6]">
      <seq>atcatcatctcctcgttcttctcctctacacgaggcgagtcgaacgaaggacttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaggaccgtgatggctactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45848" stop="48931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46148" g_stop="46196" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="560" r_length="511" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48631" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="631" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E348255" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46148" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGG</genome_strand>
        <mrna_strand>ATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAG-AGGACCGTGATGGCTACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705526" ref_strand="+" ref_description="SGN-E705526 [FA27BF03]">
      <seq>atcatctcctcgttcttctcctctacacgaggcgagtcgaacgaaggacttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggcgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45851" stop="49128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46151" g_stop="46196" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="557" r_length="511" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48828" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="826" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E705526" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46151" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATA</genome_strand>
        <mrna_strand>ATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367755" ref_strand="+" ref_description="SGN-E367755 [cLPT-14-M10]">
      <seq>tcatcttttcgttcttctcctctacacgaggcgagtcgaacgaaggacttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttttgctgctgtatcaaagaccgctgctgcgcctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgcttcaggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45852" stop="48718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46152" g_stop="46196" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48418" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="532" r_length="487" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E367755" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46152" e_stop="46196"/>
          <exon e_start="47932" e_stop="48418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAAT</genome_strand>
        <mrna_strand>TCATCTTTTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTTTGCTGCTGTATCAAAGACCGCTGCTGCGCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGCTTCAGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311849" ref_strand="+" ref_description="SGN-E311849 [cTOA-15-A18]">
      <seq>tcatctcctcgttcttctcctctacacgaggcgagtcgaacgaaggacttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45852" stop="48641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46152" g_stop="46196" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48341" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="455" r_length="410" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E311849" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46152" e_stop="46196"/>
          <exon e_start="47932" e_stop="48341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACA</genome_strand>
        <mrna_strand>TCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704758" ref_strand="+" ref_description="SGN-E704758 [FA25AG04]">
      <seq>atctcctcgttcttctcctctacacgaggcgagtcgaacgaaggacttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaaaggaggcgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45854" stop="49128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46154" g_stop="46196" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="554" r_length="511" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48828" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="823" r_length="269" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E704758" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46154" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATA</genome_strand>
        <mrna_strand>ATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAAGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333639" ref_strand="+" ref_description="SGN-E333639 [cTOD-22-N21]">
      <seq>tctcctcgttcttctcctctacacgaggcgagtcgaacgaaggacttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaagaccgtgatggctactggaagtggtttgctggaaaacttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45855" stop="48956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46155" g_stop="46196" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="553" r_length="511" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48656" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="650" r_length="97" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E333639" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46155" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCAT</genome_strand>
        <mrna_strand>TCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAAGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAAACTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277936" ref_strand="+" ref_description="SGN-E277936 [cLER-4-G15]">
      <seq>tctcctcgttcttctcctctacacgaggcgagtcgaacgaaggacttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45855" stop="48670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46155" g_stop="46196" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48370" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="481" r_length="439" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E277936" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46155" e_stop="46196"/>
          <exon e_start="47932" e_stop="48370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACA</genome_strand>
        <mrna_strand>TCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705260" ref_strand="+" ref_description="SGN-E705260 [FA26CD12]">
      <seq>ctcctcgttcttctcctctacacgaggcgagtcgaacgaaggacttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcacgatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaaaaaaggagggcaagaggcagttcaatggtttggttgatgtctaccagaagacactccaaatctgatggaattgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45856" stop="49121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46156" g_stop="46196" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="552" r_length="511" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48821" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="816" r_length="264" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E705260" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46156" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGA-GGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACT-CAAATCTGATGGAATTGCTG</genome_strand>
        <mrna_strand>CTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCACGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAAAAAGGAGGGCAAGAGGCAGTTCAATGGTTTGGTTGATGTCTACCAGAAGACACTCCAAATCTGATGGAATTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723057" ref_strand="+" ref_description="SGN-E723057 [FC19AH07]">
      <seq>tcctcgttcttctcctctacacgaggcgagtcgaacgaaggacttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccaaaggcattttgcttatggcaactactccaatgctgctctgcaaagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggagcttcctctttgttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45857" stop="48991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46157" g_stop="46196" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="551" r_length="511" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48691" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="683" r_length="132" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E723057" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46157" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTT</genome_strand>
        <mrna_strand>TCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAAAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAAAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGAGCTTCCTCTTTGTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705382" ref_strand="+" ref_description="SGN-E705382 [FA26DH09]">
      <seq>ctcgttcttctcctctacacgaggcgagtcgaacgaaggacttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggcgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattccacatttcatgtgttggtatcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45859" stop="49163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46159" g_stop="46196" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="549" r_length="511" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48863" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="853" r_length="304" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E705382" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46159" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTG</genome_strand>
        <mrna_strand>CTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCCACATTTCATGTGTTGGTATCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320864" ref_strand="+" ref_description="SGN-E320864 [cTOB-27-B14]">
      <seq>ctcgttcttctcctctacacgaggcgagtcgaacgaaggacttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactactttcagagactcttcaacttcaagaaggaccgtgatggctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45859" stop="48929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46159" g_stop="46196" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="549" r_length="511" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48629" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="619" r_length="70" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E320864" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46159" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACT</genome_strand>
        <mrna_strand>CTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTTCAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341614" ref_strand="+" ref_description="SGN-E341614 [cTOE-23-O7]">
      <seq>ctcgttcttctcctctacacgaggcgagtcgaacgaaggacttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaagaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45859" stop="48892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46159" g_stop="46196" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="549" r_length="511" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48592" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="582" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E341614" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46159" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAG</genome_strand>
        <mrna_strand>CTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAAGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699284" ref_strand="+" ref_description="SGN-E699284 [FA09BH06]">
      <seq>ctcgttcttctcctctacacgaggcgagtcgaacgaaggacttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45859" stop="48627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46159" g_stop="46196" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48327" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="434" r_length="396" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E699284" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46159" e_stop="46196"/>
          <exon e_start="47932" e_stop="48327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCT</genome_strand>
        <mrna_strand>CTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316675" ref_strand="+" ref_description="SGN-E316675 [cTOB-7-J7]">
      <seq>tcgttcttctcctctacacgaggcgagtcgaacgaaggacttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45860" stop="48654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46160" g_stop="46196" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48354" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="460" r_length="423" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E316675" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46160" e_stop="46196"/>
          <exon e_start="47932" e_stop="48354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGA</genome_strand>
        <mrna_strand>TCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719342" ref_strand="+" ref_description="SGN-E719342 [FC07CC04]">
      <seq>cgttcttctcctctacacgaggcgagtcgccctaaaaaattttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccaaaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccttaatcaaaatgaaatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaacgaacaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggagcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggcgagaggcagttcaatggtttggttgatgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45861" stop="49089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46161" g_stop="46196" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="547" r_length="511" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48789" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="777" r_length="230" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E719342" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46161" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTA</genome_strand>
        <mrna_strand>CGTTCTTCTCCTCTACACGAGGCGAGTCGCCCTAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAAAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCTTAATCAAAATGAAATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAACGAACAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGAGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344376" ref_strand="+" ref_description="SGN-E344376 [cTOF-16-L8]">
      <seq>ctctacacgaggcgagtcgaacgaaggacttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcangaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45871" stop="49046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46171" g_stop="46196" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="537" r_length="511" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48746" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="724" r_length="187" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E344376" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46171" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAA</genome_strand>
        <mrna_strand>CTCTACACGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCANGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366464" ref_strand="+" ref_description="SGN-E366464 [cLPT-13-E3]">
      <seq>tctacacgaggcgagtcggacgaaggacttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgatcaacctgctatctaccacaggcattttgcttatggcaactactccaatgctgctctgcacagaggccaagccactcatgatctatcattgatcacctcaaatgcctaacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcgcctattgagcgcgtgaaactattgatccaaaatcaagatgatatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttctggaggacaattaaggaagaaggttttgggtctttattgagaggaaacactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45872" stop="48714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46172" g_stop="46196" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48414" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="508" r_length="483" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E366464" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46172" e_stop="46196"/>
          <exon e_start="47932" e_stop="48414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGC</genome_strand>
        <mrna_strand>TCTACACGAGGCGAGTCGGACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGATCAACCTGCTATCTACCACAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCACAGAGGCCAAGCCACTCATGATCTATCATTGATCACCTCAAATGCCTAACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCGCCTATTGAGCGCGTGAAACTATTGATCCAAAATCAAGATGATATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCTGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATTGAGAGGAAACACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246572" ref_strand="+" ref_description="SGN-E246572 [cLEF-45-J13]">
      <seq>tcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttnctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="49035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46177" g_stop="46196" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="531" r_length="511" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48735" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="707" r_length="176" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E246572" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46177" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGC</genome_strand>
        <mrna_strand>TCGAGGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTNCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697161" ref_strand="+" ref_description="SGN-E697161 [FA01AA08]">
      <seq>ggcgagtcgaacgaaggacttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaggaagaaggttntgggtctttatggagagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45881" stop="48705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46181" g_stop="46196" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48405" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="489" r_length="473" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E697161" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46181" e_stop="46196"/>
          <exon e_start="47932" e_stop="48405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGG</genome_strand>
        <mrna_strand>GGCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATT-AGGAAGAAGGTTNTGGGTCTTTATGGAGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624151" ref_strand="+" ref_description="SGN-E624151 [GI|21406]">
      <seq>cgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctcgacttgcgctctagtctatcccaagatgtccatgctcgctatgggggagttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggggtttctgctgctgtatcaaagacagctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctgggaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccttgcctcaggtggtgctgctggtgcttcttctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgaccgcaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaagaagacacttaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcatcgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttggacttggttggctcatcaccaatggtgctggtcttgcttcttacccaattgatacagtaagaagaagaatgatgatgacatctggtgaggcggttaagtacaagagttcgctcgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgccggtgcgggtgtgttggccggatatgacaagcttcaggttcttgttttgggaaagaaattcggatctggcggtgcctaagtcagcctcgtaacttccttttagaattagatggtgatgaaaatctttttggtgttacatttgagtattcagttggggagaccattatcatttttccttttgcctttttgtaataattcaaaatcttaagagtgggttaaagcttaaaaaccccacactcgtttcccttgttgaagggttattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaatctattgataaaatcaaatgcggatcagtttggactaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="50170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="46" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="557" r_length="511" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="929" r_length="372" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49291" g_stop="49865" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="930" r_stop="1498" r_length="569" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1503" polyA_stop="1531"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E624151" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>1473</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCC-TTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTT-AGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAAATGCGGATCAGTTTG</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTCGACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGAGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGGGTTTCTGCTGCTGTATCAAAGACAGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGGAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCCTCAGGTGGTGCTGCTGGTGCTTCTTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGACCGCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAAGAAGACACTTAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATCGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGGACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCAATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTTAAGTACAAGAGTTCGCTCGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCCGGTGCGGGTGTGTTGGCCGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATTCGGATCTGGCGGTGCCTAAGTCAGCCTCGTAACTTCCTTTTAGAA-TTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACCATTATCATTTTTCCTTTTGCC-----TTTTTGTAATAATTC--AAAATCTTAAGAGTGGGTTAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTATTGATAAAATCAAATGCGGATCAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746075" ref_strand="+" ref_description="SGN-E746075 [GI|47105327]">
      <seq>gacccctctttctcatcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcctaagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttggtgttacatttgagtattcagttggggagacatttatcatttttccttttgacttttttttcgtaataattcgaaaaatcttagagtgggtcaaagtttaaaaaccccacactcgtttcccttgttgaagggttattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaaatctttcgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45835" stop="50151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="70" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="581" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="953" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49291" g_stop="49857" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="954" r_stop="1520" r_length="567" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E746075" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>1465</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATG-AATCTTTTGATAAAATCAAATGCGGA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC-TTTTTTTTCGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGTTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAAATCTTTCGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744906" ref_strand="+" ref_description="SGN-E744906 [GI|1890115]">
      <seq>cgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctagacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccctgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggcgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttctactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacactaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcctaagtcagcctcgtaacatcctctagaatttagatggtgatgaaaatctttttggtgttacatttgagtattcagttggggagacatttatcatttttccttttgacttttttttcgtaataattcgaaaaatcttaagagtgggtcaaagtttaaaaaccccacactcgtttcccttgttgaagggttattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaaatcttttgataaaaccactcgtttcccttgttgaagggttattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaaatcttttgataaaaccaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="50149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="46" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="557" r_length="511" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="929" r_length="372" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49291" g_stop="49850" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="930" r_stop="1490" r_length="561" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1589" polyA_stop="1613"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E744906" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>1458</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTT-AGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATG-AATCTTTTGATAAAATCAA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTAGACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCCTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTCTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACACTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTCTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC-TTTTTTTTCGTAATAATTCGAAAAATCTTAAGAGTGGGTCAAAGTTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAAATCTTTTGATAAAACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702151" ref_strand="+" ref_description="SGN-E702151 [FA17DG06]">
      <seq>cctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcnaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcaatgtttaccgtggtttgtactttggaatgtacgactccttgaaaccctgtctcttgacagaaaacctgcaggaaagtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45858" stop="49238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="49" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="560" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48927" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="928" r_length="368" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E702151" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCNAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCAATGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAACCCTGTCTCTTGACAGAAAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703506" ref_strand="+" ref_description="SGN-E703506 [FA21CG08]">
      <seq>ctttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="49192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="23" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="534" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48892" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="867" r_length="333" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E703506" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTAC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705171" ref_strand="+" ref_description="SGN-E705171 [FA26BE04]">
      <seq>atcttctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagaacactcaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcatttgttaccgtggtttgtactttggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45851" stop="49188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="56" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="567" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48888" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="896" r_length="329" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E705171" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAG-ACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAAT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGAACACTC-AATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTTGTTACCGTGGTTTGTACTTTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702042" ref_strand="+" ref_description="SGN-E702042 [FA17CE12]">
      <seq>catctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcnaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccggggtttgtactttggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45853" stop="49188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="54" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="565" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48888" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="894" r_length="329" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E702042" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAAT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCNAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGGGGTTTGTACTTTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708268" ref_strand="+" ref_description="SGN-E708268 [FA35BC03]">
      <seq>cctctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45853" stop="49188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="54" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="565" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48888" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="894" r_length="329" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E708268" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAAT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701367" ref_strand="+" ref_description="SGN-E701367 [FA15DB04]">
      <seq>ctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtgggtttgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="49180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="48" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="559" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48880" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="881" r_length="322" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E701367" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGT-GGTTTGTAC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGGTTTGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720059" ref_strand="+" ref_description="SGN-E720059 [FC09CG12]">
      <seq>cccatggggatccgacgatttcctttcacccctctttctcatcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccaaaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcaaaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45828" stop="49167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="96" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="607" r_length="511" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48867" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="915" r_length="308" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E720059" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAAAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAAAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727616" ref_strand="+" ref_description="SGN-E727616 [LA15AH08]">
      <seq>tcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45857" stop="49167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="50" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="561" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48867" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="869" r_length="308" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E727616" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722984" ref_strand="+" ref_description="SGN-E722984 [FC18DH04]">
      <seq>gacccctctttctcatcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcaaaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtngtggtatcattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45835" stop="49164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="70" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="581" r_length="511" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48864" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="886" r_length="305" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E722984" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAAAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTNGTGGTATCATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705053" ref_strand="+" ref_description="SGN-E705053 [FA26AB05]">
      <seq>atcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45851" stop="49164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="56" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="567" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48864" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="872" r_length="305" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E705053" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740095" ref_strand="+" ref_description="SGN-E740095 [LC20AD01]">
      <seq>cctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45858" stop="49164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="49" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="560" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48864" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="865" r_length="305" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E740095" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703509" ref_strand="+" ref_description="SGN-E703509 [FA21CG12]">
      <seq>ccgatatctcctcgttcttctcctctccatcactactttcgacgcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataacgtggattcaacatttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45851" stop="49148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="58" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="569" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48848" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="858" r_length="289" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E703509" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCAT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATAACGTGGATTCAACATTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724914" ref_strand="+" ref_description="SGN-E724914 [FC25CB02]">
      <seq>gcctttccccctctttctcatcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45829" stop="49147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="75" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="586" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48847" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="874" r_length="288" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E724914" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703894" ref_strand="+" ref_description="SGN-E703894 [FA22DA11]">
      <seq>tctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45855" stop="49146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="52" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="563" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48846" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="850" r_length="287" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E703894" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717564" ref_strand="+" ref_description="SGN-E717564 [FC02AD09]">
      <seq>gggcgattggcggccaatcggccgaattgcccctctttctcatcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45829" stop="49146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="97" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="608" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48846" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="895" r_length="287" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E717564" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723383" ref_strand="+" ref_description="SGN-E723383 [FC20BC10]">
      <seq>cccatggggatccgataagacccctctttctcatcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45835" stop="49146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="88" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="599" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48846" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="886" r_length="287" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E723383" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692984" ref_strand="+" ref_description="SGN-E692984 [LH_Ea10C06]">
      <seq>cacgtactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagagacattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagactgctgctgcccctattgagcgtgtaaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttggttctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaactttaagaaggaccgtgatggctactggaagtggtttgctggcaaccttgcatcaggtggtgctgctggtgcttcctctttgttctttgtctactccttggattatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactccaatctgatggaattgctggtctataccgtggattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="49138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="29" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="540" r_length="511" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48839" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="820" r_length="280" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E692984" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGACATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACTGCTGCTGCCCCTATTGAGCGTGTAAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGTTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTTAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCATCAGGTGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGATTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCCAATCTGATGGAATTGCTGGTCTATACCGTGGATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591455" ref_strand="+" ref_description="SGN-E591455 [45168]">
      <seq>catctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccttgcctcaggtggtgctgctggtgcttcttctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgacgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaagaagacactttaaatctgatggaattgctggtctatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45853" stop="49130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="54" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="565" r_length="511" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48830" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="837" r_length="272" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E591455" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACAC-TCAAATCTGATGGAATTGCTGGTCTATACC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCCTCAGGTGGTGCTGCTGGTGCTTCTTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGACGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAAGAAGACACTTTAAATCTGATGGAATTGCTGGTCTATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700433" ref_strand="+" ref_description="SGN-E700433 [FA13AD11]">
      <seq>ctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagntcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45856" stop="49130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="51" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="562" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48830" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="833" r_length="271" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E700433" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGNTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705983" ref_strand="+" ref_description="SGN-E705983 [FA28CG02]">
      <seq>ctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="49129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="48" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="559" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48829" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="829" r_length="270" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E705983" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATAC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722692" ref_strand="+" ref_description="SGN-E722692 [FC18AB02]">
      <seq>aatcggccgaattgacccctctttctcatcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45831" stop="49129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="83" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="594" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48829" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="864" r_length="270" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E722692" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATAC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731958" ref_strand="+" ref_description="SGN-E731958 [LA28CG03]">
      <seq>atcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45851" stop="49129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="56" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="567" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48829" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="837" r_length="270" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E731958" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATAC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703925" ref_strand="+" ref_description="SGN-E703925 [FA22DD12]">
      <seq>atctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaggggaggtgagaggcagttcaatggtttggttgatgtctacagggaaacactcaaatctgatggaattgctggtctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45854" stop="49128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="53" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="564" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48828" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="833" r_length="269" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E703925" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAGGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGGAAACACTCAAATCTGATGGAATTGCTGGTCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707023" ref_strand="+" ref_description="SGN-E707023 [FA31DD05]">
      <seq>atctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45854" stop="49127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="53" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="564" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48827" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="832" r_length="268" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E707023" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTAT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717936" ref_strand="+" ref_description="SGN-E717936 [FC03AF11]">
      <seq>gacccctctttctcatcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45835" stop="49126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="70" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="581" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48826" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="848" r_length="267" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E717936" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706059" ref_strand="+" ref_description="SGN-E706059 [FA28DE11]">
      <seq>cgctttctcatcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaaaggaggtgagaggcagttcaatggtttggttgatgtctaccagaagacactccaatctgatggaattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45839" stop="49120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="65" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="576" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48820" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="837" r_length="261" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E706059" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAAGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACCAGAAGACACTCCAATCTGATGGAATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722953" ref_strand="+" ref_description="SGN-E722953 [FC18DD10]">
      <seq>aatcggccgaattgacccctctttctcatcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45831" stop="49120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="83" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="594" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48820" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="855" r_length="261" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E722953" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721017" ref_strand="+" ref_description="SGN-E721017 [FC12CB03]">
      <seq>atagggcgattggcggccaatcggccgaattgacccctctttctcatcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45831" stop="49119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="101" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="612" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48819" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="872" r_length="260" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E721017" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697521" ref_strand="+" ref_description="SGN-E697521 [FA03AH11]">
      <seq>cgctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaaaggaggtgagaagcagttccatggtttggttgatgtctacaggaagacactcaaatctgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45856" stop="49114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="53" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="564" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48814" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="819" r_length="255" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E697521" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAAGGAGGTGAGAAGCAGTTCCATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706072" ref_strand="+" ref_description="SGN-E706072 [FA28DG02]">
      <seq>ctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="49112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="48" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="559" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48812" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="812" r_length="253" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E706072" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATG</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719502" ref_strand="+" ref_description="SGN-E719502 [FC08AC03]">
      <seq>gggcgattggcggccaatcggccgaattgacccctctttctcatcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcaaaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45831" stop="49092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="98" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="609" r_length="511" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48792" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="842" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E719502" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAG</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAAAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722166" ref_strand="+" ref_description="SGN-E722166 [FC16BG05]">
      <seq>aatcggccgaattgacccctctttctcaccatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcaaaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45831" stop="49092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="83" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="594" r_length="511" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48792" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="827" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E722166" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAG</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAAAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703248" ref_strand="+" ref_description="SGN-E703248 [FA20DH08]">
      <seq>ctttctcatcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgcccaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45843" stop="49091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="63" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="574" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48791" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="806" r_length="232" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E703248" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCCAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720789" ref_strand="+" ref_description="SGN-E720789 [FC11DD10]">
      <seq>aatcggccgaattgactcctttcacccctctttctcatcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45815" stop="49091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="92" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="603" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48791" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="835" r_length="232" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E720789" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585585" ref_strand="+" ref_description="SGN-E585585 [68046]">
      <seq>ctcatcatcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttgtggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggattggcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccttgcctcaggtggtgctgctggtgcttcttctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgacgccaagggttcaaagaagggaggtgagaggcagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45845" stop="49069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="62" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="573" r_length="511" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48769" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="783" r_length="210" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E585585" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTGTGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTGGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCCTCAGGTGGTGCTGCTGGTGCTTCTTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGACGCCAAGGGTTCAAAGAAGGGAGGTGAGAGGCAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710357" ref_strand="+" ref_description="SGN-E710357 [FA55AG04]">
      <seq>atcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45851" stop="49058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="56" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="567" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48758" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="766" r_length="199" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E710357" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCG</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340992" ref_strand="+" ref_description="SGN-E340992 [cTOF-5-L3]">
      <seq>atcatctcctcgttcttctcctctcatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactgggaagtggtttgctggaaaccttgcatcangaggtgctgctgggtgcttctctttgttctttgnctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45851" stop="49046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="55" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="566" r_length="511" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48746" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="754" r_length="188" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E340992" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACT-GGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCT-GGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGGAAGTGGTTTGCTGGAAACCTTGCATCANGAGGTGCTGCTGGGTGCTT-CTCTTTGTTCTTTGNCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418628" ref_strand="+" ref_description="SGN-E418628 [STM-27-N22]">
      <seq>atcatcatctcctcgttcttctcctctcatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggnaagtggtttgctggcaaccttgcctcaagtggtgctgctggtgcttcttctttgttctttggctactccttggactatgctcgtacccgtcttgctaatgacgccaaggcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45848" stop="49045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="58" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="569" r_length="511" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48745" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="756" r_length="187" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E418628" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGG-AAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGNAAGTGGTTTGCTGGCAACCTTGCCTCAAGTGGTGCTGCTGGTGCTTCTTCTTTGTTCTTTGGCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGACGCCAAGGCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708015" ref_strand="+" ref_description="SGN-E708015 [FA34CD12]">
      <seq>ccattatcgcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggagcttcctcattgtcctttgtctactccttggactatgctcgtacccgtcttgctaaatgaatgccaaggcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45850" stop="49044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="58" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="569" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48744" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="756" r_length="187" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E708015" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCT-AATG-ATGCCAAGGCTTC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGAGCTTCCTCATTGTCCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAAATGAATGCCAAGGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482165" ref_strand="+" ref_description="SGN-E482165 [cSTD-21-M11]">
      <seq>ttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttgtggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggattggcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccttgcctcaggtggtgctgctggngcttcttctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgacgccaaggcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="49044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="44" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="555" r_length="511" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48744" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="740" r_length="185" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E482165" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTGTGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTGGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCCTCAGGTGGTGCTGCTGGNGCTTCTTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGACGCCAAGGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346776" ref_strand="+" ref_description="SGN-E346776 [cTOF-32-C7]">
      <seq>tactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatnngcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttnctctttggtctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="49044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="25" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="536" r_length="511" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48744" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="721" r_length="185" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E346776" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATNNGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTNCTCTTTGGTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579245" ref_strand="+" ref_description="SGN-E579245 [86371]">
      <seq>atcatctcctcgttcttctcctctccatcactactttcgaggcgagttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggagttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggggtttctgctgctgtatcaaagacagctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctgggaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggtttcgggtctttatggagaggaaacactgctaattgttatccgttatttccccactcaggccctgaaactttgcattcaaggactacttcaaggagactcttcaacttcaaagaaggaccgtgatggctactggaagtgggtttgcttgggcaacctttgcctcagggtggtgctgctggtgctttcttctttgtcctttgtctactcctttggactaatgctcgttacccgctcttgctaatgacggccaagggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45851" stop="49043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="56" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="568" r_length="512" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.96"/>
            <acceptor a_prob="0.931" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48743" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="767" r_length="199" r_score="0.804"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E579245" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAA-TGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTG-AACTTTGCATTCAAGGACTACTTCAA-GAGACTCTTCAACTTC-AAGAAGGACCGTGATGGCTACTGGAAGT-GGTTTGC-T-GGAAACC-TTGCATCA-GGAGGTGCTGCTGGTGC-TTCCTCTTTGTTCTTTGTCTACTCC-TTGGACT-ATGCTCG-TACCCG-TCTTGCTAATGA-TGCCAA-GGCTT</genome_strand>
        <mrna_strand>GCGAGTTGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGAGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGGGTTTCTGCTGCTGTATCAAAGACAGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGGAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTCGGGTCTTTATGGAGAGGAAACACTGCTAATTGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAAACTTTGCATTCAAGGACTACTTCAAGGAGACTCTTCAACTTCAAAGAAGGACCGTGATGGCTACTGGAAGTGGGTTTGCTTGGGCAACCTTTGCCTCAGGGTGGTGCTGCTGGTGCTTTCTTCTTTGTCCTTTGTCTACTCCTTTGGACTAATGCTCGTTACCCGCTCTTGCTAATGACGGCCAAGGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703578" ref_strand="+" ref_description="SGN-E703578 [FA21DE11]">
      <seq>ctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggtttaccatttgtcttcattttgagggatgaaatttatgcatcaaagatacatgctcacttattgttctgtttgtttaagtagagcgttgactgactgatgctctgctccacaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaaatggtttgctggaaaccttgcatcangaggtgctgctggngcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaaggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45856" stop="49043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="51" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48743" g_length="812"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="861" r_length="810" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E703578" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCC-AAGGCTT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATGCATCAAAGATACATGCTCACTTATTGTTC---TGTTTGTTTAAGTAGAGCGTTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAATGGTTTGCTGGAAACCTTGCATCANGAGGTGCTGCTGGNGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAAGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557426" ref_strand="+" ref_description="SGN-E557426 [16223]">
      <seq>atcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttgtggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggattggcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggttttgctggcaaccttgccctcaggtggtgctgctggtgcttcttctttgttctttgtctactccttgggactatgctcgtacccgtcttgctatgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45851" stop="49034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="56" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="567" r_length="511" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48734" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="744" r_length="177" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E557426" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGG-TTTGCTGGAAACCTTG-CATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTT-GGACTATGCTCGTACCCGTCTTGCTAATGATG</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTGTGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTGGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTTGCTGGCAACCTTGCCCTCAGGTGGTGCTGCTGGTGCTTCTTCTTTGTTCTTTGTCTACTCCTTGGGACTATGCTCGTACCCGTCTTGCT-ATGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332222" ref_strand="+" ref_description="SGN-E332222 [cTOD-17-I13]">
      <seq>tcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttncagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctcttttgtctttgtctactcctgggactatgctcgtacccgtcttgctaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45857" stop="49034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="50" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="561" r_length="511" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48734" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="736" r_length="175" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E332222" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATG</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTNCAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTTGTCTTTGTCTACTCCTGGGACTATGCTCGTACCCGTCTTGCTAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709450" ref_strand="+" ref_description="SGN-E709450 [FA52AC09]">
      <seq>cccttgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="49034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="50" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="561" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48734" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="736" r_length="175" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E709450" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATG</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463169" ref_strand="+" ref_description="SGN-E463169 [cPRO-13-F20]">
      <seq>cctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccttgcctcaggtggtgctgctggngcttnctctttgttctttggctactccttggactatgctcgtacccgtcttgctaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45858" stop="49032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="49" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="560" r_length="511" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48733" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="734" r_length="174" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E463169" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGAT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCCTCAGGTGGTGCTGCTGGNGCTTNCTCTTTGTTCTTTGGCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709856" ref_strand="+" ref_description="SGN-E709856 [FA53BH03]">
      <seq>ccctcgttatcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaccttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttccctctttgttctttgtctactccttggactatgctcctacccgtcttgctaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45855" stop="49033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="59" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="570" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48733" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="745" r_length="175" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E709856" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTT-CCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGAT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCACCTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCCTACCCGTCTTGCTAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479545" ref_strand="+" ref_description="SGN-E479545 [cSTD-10-K2]">
      <seq>atcatctcctcgttcttctcctctcatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagaatgtccatgcctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagaagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggnaagtggtttgctggcaaccttgcctcaggtggtgctgctggtgcttcttctttgttctttggctactncttggactatgctcgtacccgtcttgctaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45851" stop="49032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="55" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="569" r_length="514" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48732" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="743" r_length="174" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E479545" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAG-ATGTCCATG-CTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAG-AGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGG-AAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGAATGTCCATGCCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGNAAGTGGTTTGCTGGCAACCTTGCCTCAGGTGGTGCTGCTGGTGCTTCTTCTTTGTTCTTTGGCTACTNCTTGGACTATGCTCGTACCCGTCTTGCTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328938" ref_strand="+" ref_description="SGN-E328938 [cTOC-24-D20]">
      <seq>tctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaagaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaagtgctgctggngcttccctcttgttctttgtctactccctggactatgctcgtacccgtcttgctaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45855" stop="49032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="52" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="563" r_length="511" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48732" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="736" r_length="173" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E328938" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAAGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAAGTGCTGCTGGNGCTTCCCTCTTGTTCTTTGTCTACTCCCTGGACTATGCTCGTACCCGTCTTGCTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405791" ref_strand="+" ref_description="SGN-E405791 [PPI-1-J17]">
      <seq>tactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgttatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccttgcctcaggtggtgctgctggggcttcttctttgttctttggctactccttggactatgctcgtacccgtcttgctaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="49032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="25" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="536" r_length="511" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48732" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="709" r_length="173" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E405791" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E405791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGTTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCCTCAGGTGGTGCTGCTGGGGCTTCTTCTTTGTTCTTTGGCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710183" ref_strand="+" ref_description="SGN-E710183 [FA54CB03]">
      <seq>cccatcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactggttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcacgaggtgctgctggtgcttcctctttgatctttgtctactccttggactatgctcgtacccgtcttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45850" stop="49028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="59" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="571" r_length="512" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48728" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="740" r_length="169" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E710183" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACT-GTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCACGAGGTGCTGCTGGTGCTTCCTCTTTGATCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724125" ref_strand="+" ref_description="SGN-E724125 [FC23AE10]">
      <seq>aatcggccgaattgacccctctttctcaccatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggagctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45831" stop="49026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="83" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="594" r_length="511" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48726" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="761" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E724125" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGAGCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477916" ref_strand="+" ref_description="SGN-E477916 [cSTD-2-C4]">
      <seq>tttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccttgcctcaggtggtgctgctggtgcttcttctttgttctttggctactccttggactatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="49013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="22" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="533" r_length="511" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48713" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="687" r_length="154" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E477916" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCCTCAGGTGGTGCTGCTGGTGCTTCTTCTTTGTTCTTTGGCTACTCCTTGGACTATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723464" ref_strand="+" ref_description="SGN-E723464 [FC20CC10]">
      <seq>ttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccaaaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcaaaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaaaaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="41" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="552" r_length="511" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48693" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="686" r_length="134" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E723464" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAAAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAAAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAAAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724121" ref_strand="+" ref_description="SGN-E724121 [FC23AE06]">
      <seq>tctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcaaaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45855" stop="48991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="52" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="563" r_length="511" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48691" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="695" r_length="132" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E724121" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAAAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E592965" ref_strand="+" ref_description="SGN-E592965 [36185]">
      <seq>cctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttgtggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggattggcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggtttggggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccttgcctcaggtgggtgctgctggtgcttcttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45858" stop="48983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="49" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="560" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48683" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="685" r_length="125" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E592965" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGG-AGGTGCTGCTGGTGCTTCCTCTT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTGTGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTGGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTGGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCCTCAGGTGGGTGCTGCTGGTGCTTCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601857" ref_strand="+" ref_description="SGN-E601857 [54905]">
      <seq>ctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttgtggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggattggcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaacttaaggaagaaggttctgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaacttttgcattcaagggactacttcaaggagactcttcaacttccaagaaagaccgtgatggctactggaagttggttttgctggcaaccttggcctcaaggtggtgcttgcctggtgctttcttctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="48" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="560" r_length="512" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48671" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="677" r_length="117" r_score="0.804"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E601857" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E601857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAA-TTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAAC-TTTGCATTCAA-GGACTACTTCAA-GAGACTCTTCAACTT-CAAGAAGGACCGTGATGGCTACTGGAAG-TGG-TTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTG</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTGTGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTGGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAACTTAAGGAAGAAGGTTCTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTTGCATTCAAGGGACTACTTCAAGGAGACTCTTCAACTTCCAAGAAAGACCGTGATGGCTACTGGAAGTTGGTTTTGCTGGCAACCTTG-GCCTCAAGGTGGTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486204" ref_strand="+" ref_description="SGN-E486204 [cSTE-21-M12]">
      <seq>ttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttgtggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggattggcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaagaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcacgccctgaactttgcattcaaagactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccttgcctcaggtggtgctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="44" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="555" r_length="511" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48671" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="667" r_length="112" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E486204" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTG</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTGTGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTGGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAAGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAC.....................................................................................................................GCCCTGAACTTTGCATTCAAAGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCCTCAGGTGGTGCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579666" ref_strand="+" ref_description="SGN-E579666 [86797]">
      <seq>ctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgttttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggtttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattccaaggactacttcaagagactcttcaacttcaagaaggaccgttgatggctactggaagtggtttgctggcaaccttgccctcaggtggtgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="48" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="559" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48668" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="671" r_length="112" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E579666" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTG-TTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATT-CAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCG-TGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTG-CATCAGGAGGTGCTG</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGG-TTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCCCTCAGGTGGTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213495" ref_strand="+" ref_description="SGN-E213495 [cLEC-71-L10]">
      <seq>tcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcagggcctggactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45857" stop="48957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="50" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="561" r_length="511" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48657" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="659" r_length="98" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E213495" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GGCCTGGACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408402" ref_strand="+" ref_description="SGN-E408402 [PPI-11-A19]">
      <seq>ctcctcgttcttctcctctccatcactactttcgaggcgagttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccggaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggacttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccttgcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45856" stop="48957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="51" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="562" r_length="511" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48657" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="660" r_length="98" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E408402" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATC</genome_strand>
        <mrna_strand>GCGAGTTGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCGGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGACTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347583" ref_strand="+" ref_description="SGN-E347583 [cTOF-26-K24]">
      <seq>ctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="48" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="559" r_length="511" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48657" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="657" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E347583" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409689" ref_strand="+" ref_description="SGN-E409689 [PPI-14-F14]">
      <seq>atcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactgggaagtggtttgctggcaaccttgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45851" stop="48956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="56" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="566" r_length="510" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48656" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="664" r_length="98" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E409689" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACT-GGAAGTGGTTTGCTGGAAACCTTGCAT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGAC-ATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGGAAGTGGTTTGCTGGCAACCTTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318238" ref_strand="+" ref_description="SGN-E318238 [cTOA-29-K13]">
      <seq>tcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactactttcagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="47" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="558" r_length="511" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48656" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="655" r_length="97" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E318238" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCAT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTTCAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479425" ref_strand="+" ref_description="SGN-E479425 [cSTD-9-H14]">
      <seq>cgagtgatcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggaccttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaaggtttgggtctttatggagaaggaacactngctaatgtatcccgtatttccccactcangccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaaagtggtttgctggcaaccttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45849" stop="48954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="62" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="574" r_length="512" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.84"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48655" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="671" r_length="97" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E479425" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGA-CTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACT-GCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGG-AAGTGGTTTGCTGGAAACCTTGCA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAAGGTTTGGGTCTTTATGGAGAAGGAACACTNGCTAATG-TATCCCGTATTTCCCCACTCAN.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAAGTGGTTTGCTGGCAACCTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483977" ref_strand="+" ref_description="SGN-E483977 [cSTE-11-L3]">
      <seq>atctcctcgttcttctcctctccatcactactttcgaggcgagttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggagttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggggtttctgctgctgtatcaaagacagctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctgggaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttntgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45854" stop="48954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="53" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="564" r_length="511" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48655" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="660" r_length="96" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E483977" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCA</genome_strand>
        <mrna_strand>GCGAGTTGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGAGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGGGTTTCTGCTGCTGTATCAAAGACAGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGGAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTNTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486139" ref_strand="+" ref_description="SGN-E486139 [cSTE-21-M11]">
      <seq>ttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttgtggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggattggcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttncagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="44" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="555" r_length="511" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48655" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="651" r_length="96" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E486139" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTGTGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTGGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTNCAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454222" ref_strand="+" ref_description="SGN-E454222 [cSTS-22-H7]">
      <seq>atcatctcctcgttcttctcctctcatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaaagtggtttgctggcaaccttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45851" stop="48954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="55" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="566" r_length="511" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48655" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="663" r_length="97" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E454222" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGG-AAGTGGTTTGCTGGAAACCTTGCA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAAGTGGTTTGCTGGCAACCTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452702" ref_strand="+" ref_description="SGN-E452702 [cSTS-17-N13]">
      <seq>tccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaagaccgtgatggctactggaagtggtttgctggcaaccttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="33" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="544" r_length="511" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48655" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="640" r_length="96" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E452702" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAAGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345720" ref_strand="+" ref_description="SGN-E345720 [cTOF-18-D10]">
      <seq>gttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="45" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="556" r_length="511" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48655" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="652" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E345720" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482227" ref_strand="+" ref_description="SGN-E482227 [cSTD-21-M12]">
      <seq>atcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccatcatccaactgttttccagaacgcagctaaccagctgcacttgcgctctactctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttgtggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaatagaaaggattggcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcaaaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgctatttccccactcaagacctgaactttgcattcaaagactacttcaagagactcttcaacttcaagaatgaccgtgatggctactggaagtggtttgctggcaaccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="44" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="555" r_length="511" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.96"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48654" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="650" r_length="95" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E482227" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCATCATCCAACTGTTTTCCAGAACGCAGCTAACCAGCTGCACTTGCGCTCTACTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTGTGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAATAGAAAGGATTGGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAAAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGCTATTTCCCCACTCAA.....................................................................................................................GACCTGAACTTTGCATTCAAAGACTACTTCAAGAGACTCTTCAACTTCAAGAATGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299860" ref_strand="+" ref_description="SGN-E299860 [cLEW-1-G24]">
      <seq>tcatcttttcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="55" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="566" r_length="511" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48653" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="660" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E299860" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTG</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441838" ref_strand="+" ref_description="SGN-E441838 [cSTA-31-K22]">
      <seq>atcatcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45848" stop="48953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="59" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="570" r_length="511" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48653" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="664" r_length="94" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E441838" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTG</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486698" ref_strand="+" ref_description="SGN-E486698 [cSTE-23-A3]">
      <seq>atcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttgtggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggattggcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttnncacttcagaangaccgtgatggctactggaagtggtttgctggcaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45851" stop="48950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="56" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="567" r_length="511" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48650" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="658" r_length="91" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E486698" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCA-ACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTGTGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTGGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTNNCACTTC-AGAANGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212538" ref_strand="+" ref_description="SGN-E212538 [cLEC-74-M12]">
      <seq>tcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatggtatccgttatttccccactcaggccctgaactttgcattccaggactactttcagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45852" stop="48948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="55" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="566" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48648" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="655" r_length="89" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E212538" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGGTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCCAGGACTACTTTCAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485616" ref_strand="+" ref_description="SGN-E485616 [cSTE-18-F4]">
      <seq>tcatcatctcctcgttcttctcctctccatcactactttcgaggcgagttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggagttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggggtttctgctgctgtatcaaagacagctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctgggaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactgggagtggtttgctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45849" stop="48945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="58" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="569" r_length="511" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48646" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="656" r_length="87" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E485616" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGA</genome_strand>
        <mrna_strand>GCGAGTTGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGAGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGGGTTTCTGCTGCTGTATCAAAGACAGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGGAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGGAGTGGTTTGCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343729" ref_strand="+" ref_description="SGN-E343729 [cTOF-20-D20]">
      <seq>atctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45854" stop="48946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="53" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="564" r_length="511" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48646" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="651" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E343729" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343334" ref_strand="+" ref_description="SGN-E343334 [cTOF-17-N2]">
      <seq>tcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactgggaagtggtttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45852" stop="48943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="55" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="566" r_length="511" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48643" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="651" r_length="85" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E343334" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACT-GGAAGTGGTTTGCT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGGAAGTGGTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728867" ref_strand="+" ref_description="SGN-E728867 [LA19AH03]">
      <seq>atcatctcctcgttcttctcctctcctcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgcgatggctactggaagtggtttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45851" stop="48942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="55" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="566" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48642" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="649" r_length="83" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E728867" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGCGATGGCTACTGGAAGTGGTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584035" ref_strand="+" ref_description="SGN-E584035 [9856]">
      <seq>ctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttcgtaaatcgttcgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtactatcccaagtatgtccatgcatcggctatagggggcgttcagcctgctatttaccagaggcattttgcttgtggcaactactccaatgctggactgcagagaggccaagccgactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggattggcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcataaccatacaagggaattggcgaatgtatagggaggacaattaaggaagaaggtttagggtctttatggatgaggaaacactgctaatgttatccgttatttccccagctcaggccctgaactttgccttcaaggactacttcaagagactcttcaacttccagaaggaccgtgatgggtactggaagtggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="48" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.79"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="570" r_length="522" r_score="0.928"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.92"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48639" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="650" r_length="80" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E584035" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTT-TTAAA-CGTT-GCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGT-CTATCCCAAG-ATGTCCATGC-TC-GCTAT-GGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCC-ACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGA-GAGGAAACACTGCTAATGTTATCCGTTATTTCCCCA-CTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTCGTAAATCGTTCGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTACTATCCCAAGTATGTCCATGCATCGGCTATAGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTGTGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCGACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTGGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCATAACCATACAAGGGAATTGGCGAATGTATAGGGAGGACAATTAAGGAAGAAGGTTTAGGGTCTTTATGGATGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCAGCTCAG.....................................................................................................................GCCCTGAACTTTGCCTTCAAGGACTACTTCAAGAGACTCTTCAACTTCCAGAAGGACCGTGATGGGTACTGGAAGTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441966" ref_strand="+" ref_description="SGN-E441966 [cSTA-31-L13]">
      <seq>atctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactctgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45854" stop="48934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="53" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="564" r_length="511" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48634" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="639" r_length="75" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E441966" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAG</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTCTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600320" ref_strand="+" ref_description="SGN-E600320 [53328]">
      <seq>cgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttgtggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggattggcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgtnttgggaggacaattaaggaacgaaggtttcggggtctttatggaggaggaaacactgctaatgttatccgttatttccccactcaggcccctgaactttgcatttcagcgacttactttcaagagactcttcaacttccaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="46" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="560" r_length="514" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.96"/>
            <acceptor a_prob="0.931" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48612" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="618" r_length="58" r_score="0.774"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E600320" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAA-GAAGGTTT-TGGGTCTTTATGGA-GAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGG-CCCTGAACTTTGCA-TTCAAGGAC-TAC-TTCAAGAGACTCTTCAACTT-CAAGAA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTGTGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTGGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTNTTGGGAGGACAATTAAGGAACGAAGGTTTCGGGGTCTTTATGGAGGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCCTGAACTTTGCATTTCAGCGACTTACTTTCAAGAGACTCTTCAACTTCCAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567515" ref_strand="+" ref_description="SGN-E567515 [11653]">
      <seq>atcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttgtggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggattggcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactccttcaacttcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45851" stop="48910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="56" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="567" r_length="511" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48610" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="619" r_length="52" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E567515" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACT-CTTCAACTTCAAG</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTGTGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTGGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCCTTCAACTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417439" ref_strand="+" ref_description="SGN-E417439 [STM-25-M20]">
      <seq>atcatctcctcgttcttctcctctccatcactactttcgaggcgagttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggagttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggggtttctgctgctgtatcaaagacagctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctgggaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcangccctgaactttgcattcaaggactacttcaagagactcttcaacttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45851" stop="48908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="56" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="567" r_length="511" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48608" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="616" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E417439" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCA</genome_strand>
        <mrna_strand>GCGAGTTGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGAGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGGGTTTCTGCTGCTGTATCAAAGACAGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGGAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAN.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485842" ref_strand="+" ref_description="SGN-E485842 [cSTE-19-D12]">
      <seq>atctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttgtggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggattggcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcangccctgaactttgcattcaaggactacttcaagagactcttcaacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45854" stop="48907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="53" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="564" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48607" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="612" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E485842" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTGTGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTGGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAN.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699338" ref_strand="+" ref_description="SGN-E699338 [FA09CG11]">
      <seq>ccatttctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccacctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggcgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgatcgtttcggtaggaccattaaggaagaaggttctgggcctttatggacaggaaacactgctaatgttatccgttatttccccactcacgccctgacctttgcattccaggactacttcaagagactctctcaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45855" stop="48906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="57" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="566" r_length="509" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.96"/>
            <acceptor a_prob="0.931" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48606" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="614" r_length="48" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E699338" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCT-TCAACTT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCACCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCT--ACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGCGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATCGTTTCGGTAGGACCATTAAGGAAGAAGGTTCTGGGCCTTTATGGACAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAC.....................................................................................................................GCCCTGACCTTTGCATTCCAGGACTACTTCAAGAGACTCTCTCAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451012" ref_strand="+" ref_description="SGN-E451012 [cSTS-11-A2]">
      <seq>atcctctcctcgttcttctcctctccatactactttcgaggcgagttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccggaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcacgatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggacttgcagcttttgccctgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45851" stop="48906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="55" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="565" r_length="510" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48606" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="612" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E451012" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTT</genome_strand>
        <mrna_strand>GCGAGTTGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCGGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCACGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGACTTGCAGCTTTTGCC-CTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E583046" ref_strand="+" ref_description="SGN-E583046 [8679]">
      <seq>ctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttgtggcanactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggattggcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaaggaaggttttgggtctttatggagaggaaacactggctaatgttatcccgttattttcccccactcagggcctgaaactttgcattcgaggaactacttcaagagactcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="48" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="565" r_length="517" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.83"/>
            <acceptor a_prob="0.931" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48602" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="610" r_length="45" r_score="0.860"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E583046" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E583046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCA-ACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAA-GAAGGTTTTGGGTCTTTATGGAGAGGAAACACT-GCTAATGTTAT-CCGTTA-TTT-CCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTG-AACTTTGCATTCAAGG-ACTACTTCAAGAGACTCTTCA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTGTGGCANACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTGGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGGCTAATGTTATCCCGTTATTTTCCCCCACTCAG.....................................................................................................................GGCCTGAAACTTTGCATTCGAGGAACTACTTCAAGAGACTCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728982" ref_strand="+" ref_description="SGN-E728982 [LA19CD06]">
      <seq>tcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="29" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="540" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48598" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="579" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E728982" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454056" ref_strand="+" ref_description="SGN-E454056 [cSTS-22-C5]">
      <seq>ctctttctcatatcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaagcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatgtgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaatgaagaaggttgtgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45839" stop="48892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="67" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="578" r_length="511" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48592" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="611" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E454056" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAG</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAAGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATGTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAATGAAGAAGGTTGTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441356" ref_strand="+" ref_description="SGN-E441356 [cSTA-30-I21]">
      <seq>atctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45854" stop="48892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="53" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="564" r_length="511" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48592" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="597" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E441356" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAG</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581686" ref_strand="+" ref_description="SGN-E581686 [7313]">
      <seq>cctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaagaatcaacgatgagatgctcaaggctggtaggctctcagaaccatacaacggaattggcgaatgtttcgggaggacaacttaaggaacgaaggtttagggtctttatggacgagggaaacactgcgtaactgttatccgttatttccccactcaggccctgaaactttgcattcacaggactacttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45858" stop="48743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="49" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="568" r_length="519" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.83"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48591" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="602" r_length="34" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E581686" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E581686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAA-AATCAA-GATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAA-TTAAGGAA-GAAGGTTTTGGGTCTTTATGGA-GA-GGAAACACTGC-TAA-TGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTG-AACTTTGCATTCA-AGGACTACTTCAA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAGAATCAACGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAACGGAATTGGCGAATGTTTCGGGAGGACAACTTAAGGAACGAAGGTTTAGGGTCTTTATGGACGAGGGAAACACTGCGTAACTGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAAACTTTGCATTCACAGGACTACTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483927" ref_strand="+" ref_description="SGN-E483927 [cSTE-11-O4]">
      <seq>ctcgttcttctcctctcatcactactttcgaggcgagttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggagttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggggtttctgctgctgtatcaaagacagctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctgggaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaaagaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaagccctgaactttgcattcaaggactacttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45859" stop="48890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="47" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="559" r_length="512" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48590" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="590" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E483927" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAG-AAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCA</genome_strand>
        <mrna_strand>GCGAGTTGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGAGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGGGTTTCTGCTGCTGTATCAAAGACAGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGGAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAAGAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAA.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286254" ref_strand="+" ref_description="SGN-E286254 [cLES-11-L19]">
      <seq>cgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="46" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="557" r_length="511" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48589" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="587" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E286254" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305536" ref_strand="+" ref_description="SGN-E305536 [cLEX-14-E1]">
      <seq>tcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45852" stop="48889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="55" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="566" r_length="511" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48589" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="596" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E305536" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279390" ref_strand="+" ref_description="SGN-E279390 [cLER-11-B22]">
      <seq>ttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="41" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="552" r_length="511" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48587" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="580" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E279390" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410543" ref_strand="+" ref_description="SGN-E410543 [PPI-17-I2]">
      <seq>catcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaanggagaaggttttgggtctttatggagaggaaacactgctaatggtatcccgtatttcccactcaggccctgaactttgcattcaggactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45850" stop="48886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="57" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="567" r_length="510" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.92"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48586" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="593" r_length="26" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E410543" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTAC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAANGGAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGGTATCCCGTATTT-CCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTC-AGGACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328380" ref_strand="+" ref_description="SGN-E328380 [cTOC-21-K12]">
      <seq>ctcgtgccgctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaagacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcangccctgaactttgcattcaaggactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45849" stop="48886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="60" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="571" r_length="511" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48586" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="598" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E328380" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTAC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAAGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAN.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336500" ref_strand="+" ref_description="SGN-E336500 [cTOE-4-D24]">
      <seq>ctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaagaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="48" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="559" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48586" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="586" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E336500" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTAC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAAGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307364" ref_strand="+" ref_description="SGN-E307364 [cLEY-12-C3]">
      <seq>ttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="44" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="555" r_length="511" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48586" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="582" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E307364" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTAC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470099" ref_strand="+" ref_description="SGN-E470099 [cSTB-17-A3]">
      <seq>atcatctcctggttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaagccctgaactttgcattcaaggactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="56" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="567" r_length="511" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48586" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="594" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E470099" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTAC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAA.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569388" ref_strand="+" ref_description="SGN-E569388 [13818]">
      <seq>ctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttgtggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggattggcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgcttatttccccactcaggcccctgaactttgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="48" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="560" r_length="512" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.96"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48576" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="578" r_length="18" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E569388" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCG-TTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGG-CCCTGAACTTTGCATT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTGTGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTGGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGCTTATTTCCCCACTCAG.....................................................................................................................GCCCCTGAACTTTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339572" ref_strand="+" ref_description="SGN-E339572 [cTOE-16-O2]">
      <seq>ctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="48" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="559" r_length="511" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48576" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="576" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E339572" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273945" ref_strand="+" ref_description="SGN-E273945 [cLEN-7-B12]">
      <seq>tcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaagcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaagatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaagaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaagccctgaactttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45857" stop="48743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="50" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="561" r_length="511" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48575" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="577" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E273945" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCAT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAAGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAAGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAAGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAA.....................................................................................................................GCCCTGAACTTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346184" ref_strand="+" ref_description="SGN-E346184 [cTOF-23-C3]">
      <seq>tcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatggtatccgttatttccccactcaagccctgaactttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="38" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="549" r_length="511" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.96"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48574" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="564" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E346184" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGGTATCCGTTATTTCCCCACTCAA.....................................................................................................................GCCCTGAACTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330505" ref_strand="+" ref_description="SGN-E330505 [cTOD-4-L8]">
      <seq>tcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatgtaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45857" stop="48743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="50" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="561" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48560" g_stop="48566" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="568" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E330505" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATGTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561427" ref_strand="+" ref_description="SGN-E561427 [17418]">
      <seq>catctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttgtggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggattggcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45853" stop="48742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="54" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="565" r_length="511" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E561427" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTGTGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTGGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561951" ref_strand="+" ref_description="SGN-E561951 [20617]">
      <seq>ctttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttgtggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggattggcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="23" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="534" r_length="511" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E561951" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTGTGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTGGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270898" ref_strand="+" ref_description="SGN-E270898 [cLEM-6-L7]">
      <seq>ctctttctcatcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaagacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaagcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaagctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaagctggtaggctctcanaaccatacaagggaattggtgattgtttcggtaggacaattaaagaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45841" stop="48739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="65" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48439" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="573" r_length="508" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E270898" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAAGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAAGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAAGCTGGTAGGCTCTCANAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAAGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710764" ref_strand="+" ref_description="SGN-E710764 [FA56CF02]">
      <seq>ctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctccaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcacaacccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacacctgctaatgttatccgctatttcccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="36" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48437" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="544" r_length="508" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E710764" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAA-CCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACA-CTGCTAATGTTATCCGTTATTTCCCCA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCCAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCACAACCCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACCTGCTAATGTTATCCGCTATTTCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472958" ref_strand="+" ref_description="SGN-E472958 [cSTB-30-F21]">
      <seq>cgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="46" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48435" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="550" r_length="504" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E472958" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E562947" ref_strand="+" ref_description="SGN-E562947 [1664]">
      <seq>ctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttgtgtaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttgtggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggattggcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctccaagctggtaagctctcagaaccatacaagggaattggcgactgttttgggaggacaattaaggaagaagggttcgggtctttatggagacgaaacactgctaatgttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="48" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48424" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="541" r_length="493" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E562947" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E562947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGTGTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTGTGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTGGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCCAAGCTGGTAAGCTCTCAGAACCATACAAGGGAATTGGCGACTGTTTTGGGAGGACAATTAAGGAAGAAGGGTTCGGGTCTTTATGGAGACGAAACACTGCTAATGTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277427" ref_strand="+" ref_description="SGN-E277427 [cLER-3-H21]">
      <seq>ctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="48" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48423" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="540" r_length="492" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E277427" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTAT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446995" ref_strand="+" ref_description="SGN-E446995 [cSTA-23-P20]">
      <seq>atctcctcgttcttctcctttccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttgtggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggattggcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45854" stop="48723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="53" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48423" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="545" r_length="492" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E446995" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTAT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTGTGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTGGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485984" ref_strand="+" ref_description="SGN-E485984 [cSTE-20-O16]">
      <seq>atcatctcctcgttcttctcctctccatcactactttcgaggcgagttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggagttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggggtttctgctgctgtatcaaagacagctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctgggaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaacgaagaaggttttgggtctttatggagaagaaacactgctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45851" stop="48717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="56" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48417" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="542" r_length="486" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E485984" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAA</genome_strand>
        <mrna_strand>GCGAGTTGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGAGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGGGTTTCTGCTGCTGTATCAAAGACAGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGGAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAACGAAGAAGGTTTTGGGTCTTTATGGAGAAGAAACACTGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340299" ref_strand="+" ref_description="SGN-E340299 [cTOF-2-K19]">
      <seq>tcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="47" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48415" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="531" r_length="484" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E340299" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440804" ref_strand="+" ref_description="SGN-E440804 [cSTA-27-G23]">
      <seq>atcatctcctcgttcttgtcctcttcatcactactttccaggcgagtcgaacgaaggacttttttaaacgttgccatggcatatatgaaccaacatccaactgttttccagaatgcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcaacctggtgtttaccagaggcattttgcttatggcaactactccaatgctggactgcaaagaggccaagccactcaagatctatcattgatcacctcaaatgcctgacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaacggaattggcgaatgttttgggaggacaattaatgaagaaggttctgggtctttatggagaggaaacactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45851" stop="48714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="56" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48414" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="539" r_length="483" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E440804" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCATATATGAACCAACATCCAACTGTTTTCCAGAATGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAACCTGGTGTTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAAAGAGGCCAAGCCACTCAAGATCTATCATTGATCACCTCAAATGCCTGACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAACGGAATTGGCGAATGTTTTGGGAGGACAATTAATGAAGAAGGTTCTGGGTCTTTATGGAGAGGAAACACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437416" ref_strand="+" ref_description="SGN-E437416 [cSTA-3-P1]">
      <seq>atcatctcctcgttcttctcctctccatcactactttcgaggcgagttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggagttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggggtttctgctgctgtatcaaagacagctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctgggaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45851" stop="48712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="56" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48412" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="537" r_length="481" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E437416" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACT</genome_strand>
        <mrna_strand>GCGAGTTGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGAGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGGGTTTCTGCTGCTGTATCAAAGACAGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGGAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483939" ref_strand="+" ref_description="SGN-E483939 [cSTE-11-B15]">
      <seq>atctcctcgttcttctcctctccatcactactttcgaggcgagttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggagttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggggtttctgctgctgtatcaaagacagctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctgggaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45854" stop="48712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="53" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48412" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="534" r_length="481" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E483939" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACT</genome_strand>
        <mrna_strand>GCGAGTTGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGAGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGGGTTTCTGCTGCTGTATCAAAGACAGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGGAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437234" ref_strand="+" ref_description="SGN-E437234 [cSTA-3-I15]">
      <seq>ctcatcatcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45845" stop="48712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="62" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48412" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="543" r_length="481" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E437234" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282550" ref_strand="+" ref_description="SGN-E282550 [cLER-18-L1]">
      <seq>ctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaaagaaggttttgggtctttatggagaggaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="48" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48410" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="528" r_length="480" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E282550" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGG-AAGAAGGTTTTGGGTCTTTATGGAGAGGAAACA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348097" ref_strand="+" ref_description="SGN-E348097 [cTOF-31-F20]">
      <seq>tctcctcgttcttctcctctcatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgcctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggttggtgtttctgctgctgtatcaaagaccgctgctgcccctatngaagcgtgtgaaaactattgatccaaaatcaagatgagatgctcagggctggtaggctctcagaaccatacaagggaattggtgattgttttcggtaggacaattaagaaagaaaggttttgggtctttatggagagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45855" stop="48706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="51" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48406" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="532" r_length="481" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E348097" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCG-CTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGG-TGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTG-AGCGTGTG-AAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTG-TTTCGGGAGGACAATTAAGGAAG-AAGGTTTTGGGTCTTTATGGAGAGGA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATNGAAGCGTGTGAAAACTATTGATCCAAAATCAAGATGAGATGCTCAGGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTTCGGTAGGACAATTAAGAAAGAAAGGTTTTGGGTCTTTATGGAGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E562900" ref_strand="+" ref_description="SGN-E562900 [1617]">
      <seq>cctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcagatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctccaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatccaagatgagatgctcaaggctggtaggctctcaaacatacaaggaattggcgatgtttggagacattagaaaagttgggtctttatggagagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45858" stop="48706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="49" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48406" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="511" r_length="462" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E562900" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E562900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCT-CAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAAT-CAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCA-GATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCA-AA-CATACAA-GGAATTGGCGA-TGTTT--GGA-GAC-ATT-A-GAA-AA-G--TTGGGTCTTTATGGAGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484339" ref_strand="+" ref_description="SGN-E484339 [cSTE-13-A1]">
      <seq>atcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttgtggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggattggcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaagttttgggtctttatggagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="30" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48404" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="503" r_length="473" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E484339" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAG</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTGTGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTGGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAAGTTTTGGGTCTTTATGGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398382" ref_strand="+" ref_description="SGN-E398382 [TUS-40-H12]">
      <seq>ctttctcatcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45843" stop="48701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="63" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48401" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="533" r_length="470" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E398382" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292911" ref_strand="+" ref_description="SGN-E292911 [cLET-11-B24]">
      <seq>tctcatcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45846" stop="48700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="60" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48400" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="529" r_length="469" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E292911" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGG</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441785" ref_strand="+" ref_description="SGN-E441785 [cSTA-31-G2]">
      <seq>cctcgttcttctcctctccatcactactttcgaggcgagttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggagttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggggtttctgctgctgtatcaaagacagctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctgggaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45858" stop="48674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="49" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48374" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="492" r_length="443" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E441785" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTA</genome_strand>
        <mrna_strand>GCGAGTTGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGAGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGGGTTTCTGCTGCTGTATCAAAGACAGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGGAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290125" ref_strand="+" ref_description="SGN-E290125 [cLET-5-F8]">
      <seq>atctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45854" stop="48674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="53" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48374" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="496" r_length="443" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E290125" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472956" ref_strand="+" ref_description="SGN-E472956 [cSTB-30-F13]">
      <seq>cgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="46" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48370" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="485" r_length="439" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E472956" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331423" ref_strand="+" ref_description="SGN-E331423 [cTOD-9-B2]">
      <seq>tttctcatcatctcctcgttcttctgctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcanaaccatacaagggaattggtgattgtttcggtaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45844" stop="48669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="62" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48369" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="500" r_length="438" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E331423" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGAC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCANAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248966" ref_strand="+" ref_description="SGN-E248966 [cLEF-49-L8]">
      <seq>tcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="47" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48369" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="485" r_length="438" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E248966" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGAC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437949" ref_strand="+" ref_description="SGN-E437949 [cSTA-5-J11]">
      <seq>cactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="28" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48369" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="466" r_length="438" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E437949" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGAC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438608" ref_strand="+" ref_description="SGN-E438608 [cSTA-8-J22]">
      <seq>atctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45854" stop="48669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="53" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48369" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="491" r_length="438" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E438608" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGAC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472957" ref_strand="+" ref_description="SGN-E472957 [cSTB-30-F19]">
      <seq>cgttcttctcctatccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="46" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48369" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="484" r_length="438" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E472957" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGAC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473020" ref_strand="+" ref_description="SGN-E473020 [cSTB-30-F20]">
      <seq>cgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="46" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48369" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="484" r_length="438" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E473020" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGAC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441203" ref_strand="+" ref_description="SGN-E441203 [cSTA-29-H9]">
      <seq>cctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45858" stop="48664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="49" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48364" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="482" r_length="433" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E441203" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGG</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281898" ref_strand="+" ref_description="SGN-E281898 [cLES-2-J17]">
      <seq>tcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="43" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48360" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="472" r_length="429" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E281898" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E563277" ref_strand="+" ref_description="SGN-E563277 [1718]">
      <seq>ctcctcgttcttctcctctccatcactactttcgaggcgagttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacctgcgctctagtctatcccaagatgtccatgctcgctatgggggagttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggggtttctgctgctgtatcaaagacagctgctgcccctattgagcgtgtgaaactattgatccaaaatccagatgagatgctcaatgctgggaggctctcagaaccataccagggaattggcgaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45856" stop="48658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="51" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48358" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="478" r_length="427" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E563277" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E563277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGT</genome_strand>
        <mrna_strand>GCGAGTTGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACCTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGAGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGGGTTTCTGCTGCTGTATCAAAGACAGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCCAGATGAGATGCTCAATGCTGGGAGGCTCTCAGAACCATACCAGGGAATTGGCGAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300996" ref_strand="+" ref_description="SGN-E300996 [cLEW-22-A23]">
      <seq>ctcggtcttctcctctccagcactaggttctaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctaatctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaagcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcacgatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctccttaagagaaaggatttgcagcttttgccactgactttctcatgggaggtgtttctgctgctgtatcaaagaccgttgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaagctggtaggctctcataaccatacaagggaattggtgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="48" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48357" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="474" r_length="426" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E300996" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTG</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAATCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAAGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCACGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTTAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGAGGTGTTTCTGCTGCTGTATCAAAGACCGTTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAAGCTGGTAGGCTCTCATAACCATACAAGGGAATTGGTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247320" ref_strand="+" ref_description="SGN-E247320 [cLEF-46-L1]">
      <seq>tcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaagatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="47" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48356" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="472" r_length="425" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E247320" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAAGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436866" ref_strand="+" ref_description="SGN-E436866 [cSTA-1-M8]">
      <seq>atctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttgtggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggattggcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45854" stop="48654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="53" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48354" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="476" r_length="423" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E436866" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E436866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTGTGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTGGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277491" ref_strand="+" ref_description="SGN-E277491 [cLER-3-M14]">
      <seq>tcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="47" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48348" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="464" r_length="417" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E277491" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAAT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473011" ref_strand="+" ref_description="SGN-E473011 [cSTB-30-D6]">
      <seq>cgttcttctcctgtccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcggatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgtccagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgcatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="46" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48330" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="445" r_length="399" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E473011" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCGGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTCCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGCATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446091" ref_strand="+" ref_description="SGN-E446091 [cSTA-19-N20]">
      <seq>atcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttgtggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggattggcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45851" stop="48630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="56" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48330" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="455" r_length="399" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E446091" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTGTGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTGGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365331" ref_strand="+" ref_description="SGN-E365331 [cLPT-2-F11]">
      <seq>cgtcacttactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctcttagtctatcccaagatgtccatgctcgctataggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="32" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48315" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="417" r_length="385" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E365331" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTC-TAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTTAGTCTATCCCAAGATGTCCATGCTCGCTATAGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444195" ref_strand="+" ref_description="SGN-E444195 [cSTA-42-C13]">
      <seq>tctcctcgttcttctcctctccatcactactttcgaggcgagttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggagttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggggtttctgctgctgtatcaaagacagctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45855" stop="48615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="52" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48315" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="436" r_length="384" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E444195" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAA</genome_strand>
        <mrna_strand>GCGAGTTGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGAGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGGGTTTCTGCTGCTGTATCAAAGACAGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270389" ref_strand="+" ref_description="SGN-E270389 [cLEM-1-D18]">
      <seq>ctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="48" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48315" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="432" r_length="384" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E270389" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335796" ref_strand="+" ref_description="SGN-E335796 [cTOE-6-I9]">
      <seq>ctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="48" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48315" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="432" r_length="384" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E335796" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438506" ref_strand="+" ref_description="SGN-E438506 [cSTA-8-B19]">
      <seq>cctcgttcttctcctctccatcactactttcgaggcgagttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggagttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggggtttctgctgctgtatcaaagacagctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45858" stop="48614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="49" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48314" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="432" r_length="383" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E438506" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCA</genome_strand>
        <mrna_strand>GCGAGTTGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGAGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGGGTTTCTGCTGCTGTATCAAAGACAGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469127" ref_strand="+" ref_description="SGN-E469127 [cSTB-10-F15]">
      <seq>cctcgttcttctcctctccatcactactttcgaggcgagttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccggaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggacttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45858" stop="48614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="49" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48314" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="432" r_length="383" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E469127" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCA</genome_strand>
        <mrna_strand>GCGAGTTGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCGGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGACTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248237" ref_strand="+" ref_description="SGN-E248237 [cLEF-55-I1]">
      <seq>tcatctcctcgttcttctcctctccatcactacgttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaagcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaagctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45852" stop="48613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="55" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48313" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="437" r_length="382" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E248237" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAAGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAAGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335286" ref_strand="+" ref_description="SGN-E335286 [cTOE-1-D15]">
      <seq>tcatctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45852" stop="48613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="55" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48313" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="437" r_length="382" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E335286" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441201" ref_strand="+" ref_description="SGN-E441201 [cSTA-29-H5]">
      <seq>cctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaacgactttcttaaacgttgccatggcagatatgaaccaacatccaactgttttccataaggcagctaaccagctgcacttgcgctctactctatcccaagatgtccatgctcgctatgggggcgttcaacctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaagctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggaagctctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45858" stop="48598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="49" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48298" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="416" r_length="367" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E441201" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAAT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTCTTAAACGTTGCCATGGCAGATATGAACCAACATCCAACTGTTTTCCATAAGGCAGCTAACCAGCTGCACTTGCGCTCTACTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAACCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAAGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAAGCTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723852" ref_strand="+" ref_description="SGN-E723852 [FC22AG07]">
      <seq>atcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcaaatatgaatcaccatccaactgttttccagaaggcagcaaaccctctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccaaaggcattttgcttatggcaactactccaatgttggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgagaggtgtttctgctgctgtatcaaaaaccgctgctgcccctattgagcgtgtgaaactattgatccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="30" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48296" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="395" r_length="365" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E723852" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAA</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAAATATGAATCACCATCCAACTGTTTTCCAGAAGGCAGCAAACCCTCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAAAGGCATTTTGCTTATGGCAACTACTCCAATGTTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGAGAGGTGTTTCTGCTGCTGTATCAAAAACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440464" ref_strand="+" ref_description="SGN-E440464 [cSTA-16-L8]">
      <seq>atcatctcctcgttcttctcctctccatcactactttcgaggcgagttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggagttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggggtttctgctgctgtatcaaagacagctgctgcccctattgagcgtgtgaaactattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45851" stop="48592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="56" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48292" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="417" r_length="361" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E440464" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATC</genome_strand>
        <mrna_strand>GCGAGTTGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGAGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGGGTTTCTGCTGCTGTATCAAAGACAGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326661" ref_strand="+" ref_description="SGN-E326661 [cTOC-17-O6]">
      <seq>tcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45857" stop="48588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="50" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48288" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="407" r_length="357" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E326661" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347691" ref_strand="+" ref_description="SGN-E347691 [cTOF-26-E5]">
      <seq>tctcctcgttcttctcctctccatcactactttcgaggcgagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaagatttgcagcttttgccactgactttctcatgggtggtggttctgctgctgtatcaaaaaccgctgctggccctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45855" stop="48571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="52" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48271" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="392" r_length="340" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E347691" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAAGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGGTTCTGCTGCTGTATCAAAAACCGCTGCTGGCCCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E565981" ref_strand="+" ref_description="SGN-E565981 [4420]">
      <seq>tctcctctccatcactactcgagcgagtcgaacgaaggacttttaaacgttgccatggcagatatgaaccagcatccaactgtttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttgtggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggattggcagcttttgccactgactttctcatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45864" stop="48529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="37" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48229" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="332" r_length="295" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E565981" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E565981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGT</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTT-TT-AAACGTTGCCATGGCAGATATGAACCAGCATCCAACTG-TTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTGTGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTGGCAGCTTTTGCCACTGACTTTCTCATGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438416" ref_strand="+" ref_description="SGN-E438416 [cSTA-7-H20]">
      <seq>tactttcgaggcgagtcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45878" stop="48391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46182" g_stop="46196" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="25" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48091" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="185" r_length="160" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E438416" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>175</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46182" e_stop="46196"/>
          <exon e_start="47932" e_stop="48091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTCGAACGAAGGTACAATTTCTCTCTTTCTCTAATGTCTAAATATAGATCGTTTACTTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTGGTAATATGAGAATTAAATTGTTTTTTATCATGAGAAATTTGACAGACAAGAAAGGAGGTACTATCAACTTAAATTTGGGGCAGAGAGAGTAATTTTATTAATGAATTGTGAGTTGATTCATATGCGAATTTAGCATTGAAGTTGAATCAGGGGAATCTGTCTATCTGTATATATTAGATTTGTCTTATGTCCTATAATTATAAGACTCAATCACTGCCAGCATGCTATGCATACTGTTAGTACTTTGTGGACAAGATATAAAAAAAAAGAAGTTATTATTGTTGGCTGAATATCAGCCATATGTATAAAGTATTATATGTATTGTTGTGTTGGCTAAATATCAGTCGTATGTATAAAGTAAGAGTCTTTTTATTTTTGTCGTCTTGCGTCGGCTGAAAAAAACCAAATGTACAAAAGTCGTAAAGTAAATAATTTGTCGGCCAATCATGTAAAAAGTTTGTTGGTCAATTATGTAAAGTAAATAGTATGACGGTGTAATTTATGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATACCCTCTCTTTACGCTTCCACCCCAAAATTGGTATGGTCTGTTTGTTAATCTAAATTAGCCAATGAAATTGGAATTGATGCAATGCAAAAAATGTAAATCTAATTCTTTTTTATTTTTTGAGCTCTTGCTAATTGTGAAAGTTATGCTTTTGGTGTGAAGTTGGTTGGTTGAGCTCCTAAAATATTTTGAGATCTTACTTGAACAAGATTTATCTTGAGACTTTAAACCTAAAATTTTGAGTTAAAGTTTTGCCCAATTTAATTGCTATGTAGAGATCATAAAAGTGTTTAGCTGTTGACATTTCTAATGCAGTAACAGAATTGCCATTTCAAATGGCGGTTGAATGTGAGAATACCATGTTTAACTGGTTTAGTAATGTTTTTAAGTTTGTTGTTGGGGTATGTATATATTGTGAGTAGATAGATGGTCTTAATTGTTTAGTGTGCAGATCAGTAGATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGC</genome_strand>
        <mrna_strand>GCGAGTCGAACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329131" ref_strand="+" ref_description="SGN-E329131 [cTOD-2-A13]">
      <seq>ttttattcatttttttcagatggtatatctccgtgttgcttatgtatatgtattcatttttctgtttgtagttgttttctgattagatctgtaatatatagtgattgttctgtttcgtaacgttagtgcggttcattactgagtagttttgaaggtgttacggagatctgcttttgtttttgttagatatgtgatttagtttaatggatccaatcgtatttgtgtttttcaatgcttttttagttgtggatgagtattttgacagttgactgggcagatctggtcaatgagttatagtattgctatgttcattcattgtgctgctccatggacaaacgtctagtgattttaactagttgttttttacttaacgtagcatagaattgctggttatagtactttataaagtctctcagtttatgtgattgtagttgactagtcactgagtataagaaagaatattttttgaaacatctgatctaaaacaagctatgtatatgtttttgttgctataactaatctaattaaattgttttttattataaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45942" stop="47112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46242" g_stop="46777" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E329131" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46242" e_stop="46777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTCA-TTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATT-CTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTG</genome_strand>
        <mrna_strand>TTTTATTCATTTTTTTCAGATGGTATATCTCCGTGTTGCTTATGTATATGTATTCATTTTTCTGTTTGTAGTTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACGTTAGTGCGGTTCATTACTGAGTAGTTTTGAAGGTGTTACGGAGATCTGCTTTTGTTTTTGTTAGATATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCAATGCTTTT-TTAGTTGTGGATGAGTATTTTGACAGTTGACTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTGTGCTGCTCCATGGACAAACGTCTAGTGATTTTAACTAGTTGTTTTTTACTTAACGTAGCATAGAATTGCTGGTTATAGTACTTTATAAAGTCTCTCAGTTTA--TG--TG-A-TTG--TA--GTTGACTAGTCACTGAGTATAAGAAAGAATATTTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTTGCTATAACTAATCTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710830" ref_strand="+" ref_description="SGN-E710830 [FA56DG02]">
      <seq>aacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47628" stop="48600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47808" g_stop="47815" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="0.625"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47816" i_stop="47931" i_length="116">
            <donor d_prob="0.548" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47932" g_stop="48300" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="376" r_length="369" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E710830" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47808" e_stop="47815"/>
          <exon e_start="47932" e_stop="48300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAATGGTGAGAACTCCTAGTGCTTATGGCAGCAATTTTTTTGTTCTTTGCTGGATTTATGGACTTATTTTGTCAATGTTGGGCTTAAGTATAGAGATCTGATTCATGCTCAATCTGTGCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCA</genome_strand>
        <mrna_strand>AACGAA-G....................................................................................................................GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279977" ref_strand="+" ref_description="SGN-E279977 [cLEL-7-A9](-)">
      <seq>ttgagcatctcatcttgattttggatcaatagtttcacacgctcaataggggcagcagcggtctttgatacagcagcagaaacaccacccatgagaaagtcagtggcaaaagctgcaaatcctttctcttgaggagcctgcacaaacacaggtgaggcgtttgaggtgatcaatgatagatcctgagtggcttggcctctctgcagtccagcattggagtagttgccataagcaaaatgcctctggtaaatagcaggctgaacgcccccatagcgagcatggacatcttgggatagactagagcgcaagtgcagctggtttgctgccttctggaaaccagttggatgctgattcatatctgccattgcaacgtttaaataagtccttctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="-" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48615" stop="47626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48315" g_stop="47922" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="-" ref_id="SGN-E279977" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48315" e_stop="47922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGCATCTCATCTTGATTTTGGATCAATAGTTTCACACGCTCAATAGGGGCAGCAGCGGTCTTTGATACAGCAGCAGAAACTCCACCCATGAGAAAGTCAGTGGCAAAAGCTGCAAATCCTTTCTCTTGAGGAGCCTGCACAAACACAGGTGAGGCATTTGAGGTGATCAATGATAGATCCTGAGTGGCTTGGCCTCTCTGCAGAGCAGCATTGGAGTAGTTGCCATAAGCAAAATGCCTCTGGTAGATAGCAGGCTGAACGCCCCCATAGCGAGCATGGACATCTTGGGATAGACTAGAGCGCAAGTGCAGCTGGTTAGCTGCCTTCTGGAAAACAGTTGGATGCTGATTCATATCTGTCATTGCAACGTTTAAAAAAGTCCTGCACAGAT</genome_strand>
        <mrna_strand>TTGAGCATCTCATCTTGATTTTGGATCAATAGTTTCACACGCTCAATAGGGGCAGCAGCGGTCTTTGATACAGCAGCAGAAACACCACCCATGAGAAAGTCAGTGGCAAAAGCTGCAAATCCTTTCTCTTGAGGAGCCTGCACAAACACAGGTGAGGCGTTTGAGGTGATCAATGATAGATCCTGAGTGGCTTGGCCTCTCTGCAGTCCAGCATTGGAGTAGTTGCCATAAGCAAAATGCCTCTGGTAAATAGCAGGCTGAACGCCCCCATAGCGAGCATGGACATCTTGGGATAGACTAGAGCGCAAGTGCAGCTGGTTTGCTGCCTTCTGGAAACCAGTTGGATGCTGATTCATATCTGCCATTGCAACGTTTAAATAAGTCCTTCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305087" ref_strand="+" ref_description="SGN-E305087 [cLEY-18-D23]">
      <seq>gaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttccgtaggacaattaaagaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttcccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47628" stop="48737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47928" g_stop="48437" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E305087" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47928" e_stop="48437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCA</genome_strand>
        <mrna_strand>GAAGGACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCCGTAGGACAATTAAAGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727728" ref_strand="+" ref_description="SGN-E727728 [LA15CC09]">
      <seq>gaggcttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggcgagaggcagttcaatggtttggttgatgtctacaagaagacactccaatctgatggaattgctggtctataccgtggattcaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47630" stop="49144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47929" g_stop="48442" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48844" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="798" r_length="285" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E727728" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47929" e_stop="48442"/>
          <exon e_start="48560" e_stop="48844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATT</genome_strand>
        <mrna_strand>GAGG-CTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAAGAAGACACTCCAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705967" ref_strand="+" ref_description="SGN-E705967 [FA28CE09]">
      <seq>ggcgagtcgaacgaaggacttatttaaacgttgaaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47628" stop="49201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="527" r_length="511" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48901" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="869" r_length="342" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E705967" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTG</genome_strand>
        <mrna_strand>GACTTATTTAAACGTTGAAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483776" ref_strand="+" ref_description="SGN-E483776 [cSTE-10-J22]">
      <seq>ttcgaggcgagttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggagttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggggtttctgctgctgtatcaaagacagctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctgggaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccttgcctcaggtggtgctgctggtgcttcttctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgacgccaaggcttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47628" stop="49046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="532" r_length="511" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48746" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="719" r_length="187" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E483776" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAA</genome_strand>
        <mrna_strand>GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGAGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGGGTTTCTGCTGCTGTATCAAAGACAGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGGAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCCTCAGGTGGTGCTGCTGGTGCTTCTTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGACGCCAAGGCTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407336" ref_strand="+" ref_description="SGN-E407336 [PPI-6-D4]">
      <seq>gaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaaggcagctaaccagctgcacctgcgcctctagtctaccccaagctgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagaagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggcttactggaagtggtttgctggcaaccttgcctcangtggtgcttgctggngcttcttctttgttctttgnctactccttggactatgctcgtacccgtcttgctaatgacgccaaggcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47628" stop="49044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="522" r_length="514" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48744" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="709" r_length="187" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E407336" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAG-AAGGCAGCTAACCAGCTGCACTTGCGC-TCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAG-AGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGC-TACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGC-TGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTC</genome_strand>
        <mrna_strand>GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAAGGCAGCTAACCAGCTGCACCTGCGCCTCTAGTCTACCCCAAGCTGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTTACTGGAAGTGGTTTGCTGGCAACCTTGCCTCANGTGGTGCTTGCTGGNGCTTCTTCTTTGTTCTTTGNCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGACGCCAAGGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699188" ref_strand="+" ref_description="SGN-E699188 [FA09AA06]">
      <seq>cgttcttctcctctccatcactactttcgacgctagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47628" stop="49034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="557" r_length="511" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48734" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="732" r_length="175" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E699188" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATG</genome_strand>
        <mrna_strand>GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454439" ref_strand="+" ref_description="SGN-E454439 [cSTS-23-G6]">
      <seq>gttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcacccaactgttttccagaaggcagctaaccagctgcaccttgcgctcttgtctactcccaagacgtccatgcttcgctatgggggcgttcagcctgctatttacccggaggcattttgcttatggcaacttactccaatgctggacttgcagagaggccaagccactcaggaatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagaaaaaggacttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagaatgaaatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaagaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggcttactggaagtggtttgctggcaaccttgcctcangtggtgctgctggtgcttcttctttgttctttgnctactccttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47628" stop="49004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="530" r_length="519" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48704" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="676" r_length="146" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E454439" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCAC-TTGCGCTCTAGTCTA-TCCCAAGATGTCCATGC-TCGCTATGGGGGCGTTCAGCCTGCTATCTA-CCAGAGGCATTTTGCTTATGGCAAC-TACTCCAATGCTGCTC-TGCAGAGAGGCCAAGCCACTCAGG-ATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAG-ATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGC-TACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGG</genome_strand>
        <mrna_strand>GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCACCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACCTTGCGCTCTTGTCTACTCCCAAGACGTCCATGCTTCGCTATGGGGGCGTTCAGCCTGCTATTTACCCGGAGGCATTTTGCTTATGGCAACTTACTCCAATGCTGGACTTGCAGAGAGGCCAAGCCACTCAGGAATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAAAAAGGACTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGAATGAAATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAAGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTTACTGGAAGTGGTTTGCTGGCAACCTTGCCTCANGTGGTGCTGCTGGTGCTTCTTCTTTGTTCTTTGNCTACTCCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574273" ref_strand="+" ref_description="SGN-E574273 [33714]">
      <seq>ctcgttcttctcctctccatcactactttcgaggcgattcgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccttgcctcaggtggtgctgctggtgcttcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47628" stop="48982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="559" r_length="511" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48682" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="682" r_length="123" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E574273" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCT</genome_strand>
        <mrna_strand>GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCCTCAGGTGGTGCTGCTGGTGCTTCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481105" ref_strand="+" ref_description="SGN-E481105 [cSTD-16-F11]">
      <seq>cgttcttctcctctccatcactactttcgaggcgagttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccggaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggacttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47628" stop="48954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="557" r_length="511" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48655" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="653" r_length="96" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E481105" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCA</genome_strand>
        <mrna_strand>GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCGGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGACTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474418" ref_strand="+" ref_description="SGN-E474418 [cSTB-36-O10]">
      <seq>ctactttcgaggcgagttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccggaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggacttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47628" stop="48907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="537" r_length="511" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48607" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="585" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E474418" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTC</genome_strand>
        <mrna_strand>GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCGGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGACTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451037" ref_strand="+" ref_description="SGN-E451037 [cSTS-11-E16]">
      <seq>ctcgttcttctcctctccatcactactttcgaggcgagttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccggaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggacttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctnatgttatccggtatttccccactcangccctgaactttgcattcaaggactacttcaagagactcttcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47628" stop="48904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="559" r_length="511" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.94"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48604" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="604" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E451037" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAAC</genome_strand>
        <mrna_strand>GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCGGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGACTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTNATGTTATCCGGTATTTCCCCACTCAN.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467955" ref_strand="+" ref_description="SGN-E467955 [cSTB-2-A4]">
      <seq>actactttcgaggcgagttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccggaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggacttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47628" stop="48885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47932" g_stop="48442" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="538" r_length="511" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48585" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="564" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E467955" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47932" e_stop="48442"/>
          <exon e_start="48560" e_stop="48585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTA</genome_strand>
        <mrna_strand>GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCGGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGACTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312164" ref_strand="+" ref_description="SGN-E312164 [cTOA-11-K6]">
      <seq>tcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47628" stop="48723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47932" g_stop="48423" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="502" r_length="492" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E312164" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47932" e_stop="48423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTAT</genome_strand>
        <mrna_strand>GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441784" ref_strand="+" ref_description="SGN-E441784 [cSTA-31-G2]">
      <seq>cctcgttcttctcctctcatcactactttcgaggcgaagttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggagttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggggtttctgctgctgtatcaaagacagctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctgggaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="45858" stop="48722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47932" g_stop="48422" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="540" r_length="491" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E441784" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47932" e_stop="48422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTA</genome_strand>
        <mrna_strand>GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGAGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGGGTTTCTGCTGCTGTATCAAAGACAGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGGAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473936" ref_strand="+" ref_description="SGN-E473936 [cSTB-34-A2]">
      <seq>gcgagtcgaacgaatgacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaagcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47628" stop="48698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47932" g_stop="48398" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="482" r_length="467" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E473936" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47932" e_stop="48398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTAT</genome_strand>
        <mrna_strand>GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAAGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438919" ref_strand="+" ref_description="SGN-E438919 [cSTA-10-A18]">
      <seq>ctcctctccatcactactttcgaggcgagttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggagttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggggtttctgctgctgtatcaaagacagctgctgcccctattgagcgtgtgaaactattgatccaaaatcaaagatgagatgctcaaggctgggaggctctcagaaccatacaagggaattggcgaatgttttgggaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47628" stop="48669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47932" g_stop="48369" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="478" r_length="439" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E438919" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47932" e_stop="48369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATC-AAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGAC</genome_strand>
        <mrna_strand>GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGAGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGGGTTTCTGCTGCTGTATCAAAGACAGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAAGATGAGATGCTCAAGGCTGGGAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442338" ref_strand="+" ref_description="SGN-E442338 [cSTA-33-E15]">
      <seq>ctcgttcttctcctctccatcactactttcgaggcgagttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggagttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggggtttctgctgctgtatcaaagacagctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctgggaggctctcagaaccatacaagggaattggcgaatgttttgggaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47628" stop="48669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47932" g_stop="48369" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="486" r_length="438" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E442338" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47932" e_stop="48369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGAC</genome_strand>
        <mrna_strand>GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGAGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGGGTTTCTGCTGCTGTATCAAAGACAGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGGAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485979" ref_strand="+" ref_description="SGN-E485979 [cSTE-20-M18]">
      <seq>tcgttcttctcctctccatcactactttcgaggcgagttgaacgaaggacttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggagttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggggtttctgctgctgtatcaaagacagctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctgggaggctctcagaaccatacaagggaattggcgaatgttttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47628" stop="48664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47932" g_stop="48364" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="480" r_length="433" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E485979" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47932" e_stop="48364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGG</genome_strand>
        <mrna_strand>GACTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGAGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGGGTTTCTGCTGCTGTATCAAAGACAGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGGAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246002" ref_strand="+" ref_description="SGN-E246002 [cLEF-54-I16]">
      <seq>tctttcttctcctctccatcactactttcgaggcgaggcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctctctatgggggcgttcagcctgctattaaccagaggcattttgcttatggcaactactccaatgctggactgcaaagaggccaagccactcatgatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgaacgtgtgaaactattgatccaaaatcaagatgacatgctcaatgctgagtggctctcagaaccatacaagggaattggtgattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47628" stop="48658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47932" g_stop="48358" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="474" r_length="427" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E246002" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47932" e_stop="48358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGT</genome_strand>
        <mrna_strand>GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCTCTATGGGGGCGTTCAGCCTGCTATTAACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAAAGAGGCCAAGCCACTCATGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAACGTGTGAAACTATTGATCCAAAATCAAGATGACATGCTCAATGCTGAGTGGCTCTCAGAACCATACAAGGGAATTGGTGATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301867" ref_strand="+" ref_description="SGN-E301867 [cLEW-25-O9]">
      <seq>gaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatgcaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtatctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgccaaggctggtaggctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47628" stop="48629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47932" g_stop="48329" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="405" r_length="397" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E301867" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47932" e_stop="48329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGT</genome_strand>
        <mrna_strand>GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATGCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTATCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGC-CAAGGCTGGTAGGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248141" ref_strand="+" ref_description="SGN-E248141 [cLEF-55-G17]">
      <seq>gagtcgaacgaaggacttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccaaaagcattctgcttatggcaactactccaatgctggactgcagagaggccaagccactcaagatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47628" stop="48613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47932" g_stop="48313" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="395" r_length="382" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E248141" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47932" e_stop="48313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTC</genome_strand>
        <mrna_strand>GACTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAAAAGCATTCTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAAGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474471" ref_strand="+" ref_description="SGN-E474471 [cSTB-36-L11]">
      <seq>ctactttcgaggcgttttgaactatggacttttttaaacgttgccagggcaggggtgaaccagcatgcaactgttttccacaacgcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgtccagcctgctatttaccggaggcattttgcttatggcaactactccaatgctggactgcacagaggccaagccactcaggatctatcatagatcaccgtgaaaagcctcacctgtgtttgtgcatgctcctcaagagaaaggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47623" stop="48498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47932" g_stop="48198" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="294" r_length="268" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E474471" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>267</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47932" e_stop="48198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACC-TCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATT</genome_strand>
        <mrna_strand>GACTTTTTTAAACGTTGCCAGGGCAGGGGTGAACCAGCATGCAACTGTTTTCCACAACGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTCCAGCCTGCTATTTACCGGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCACAGAGGCCAAGCCACTCAGGATCTATCATAGATCACCGTGAAAAGCCTCACCTGTGTTTGTGCATGCTCCTCAAGAGAAAGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451744" ref_strand="+" ref_description="SGN-E451744 [cSTS-14-G23]">
      <seq>cttttttaaacgttgccatggcagatatgaaccagcatccaactgttttccagaaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcangccctgaactttgcattcaaggactacttcaagagactcttcaacttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47634" stop="48908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47934" g_stop="48442" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48608" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="559" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E451744" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47934" e_stop="48442"/>
          <exon e_start="48560" e_stop="48608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAG-AAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCA</genome_strand>
        <mrna_strand>CTTTTTTAAACGTTGCCATGGCAGATATGAACCAGCATCCAACTGTTTTCCAGAAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAN.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213789" ref_strand="+" ref_description="SGN-E213789 [cLEC-76-O5]">
      <seq>cttatttaaacgttgcaatggcagatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatcccaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47634" stop="48598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47934" g_stop="48298" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E213789" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47934" e_stop="48298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAAT</genome_strand>
        <mrna_strand>CTTATTTAAACGTTGCAATGGCAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314014" ref_strand="+" ref_description="SGN-E314014 [cTOA-19-J24]">
      <seq>ttttttaaacgttgcaatgacagatatgaatcagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47635" stop="48656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47935" g_stop="48356" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E314014" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47935" e_stop="48356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATT</genome_strand>
        <mrna_strand>TTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264945" ref_strand="+" ref_description="SGN-E264945 [cLEI-10-H3]">
      <seq>agatatgaatcagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47656" stop="48956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47956" g_stop="48442" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48656" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="584" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E264945" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47956" e_stop="48442"/>
          <exon e_start="48560" e_stop="48656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCAT</genome_strand>
        <mrna_strand>AGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E562925" ref_strand="+" ref_description="SGN-E562925 [1642]">
      <seq>ggctgcagaatcggcacgaggccagcatccaactgttttccagaaggcagctaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaagggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47666" stop="48739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47958" g_stop="48439" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="497" r_length="482" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E562925" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E562925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47958" e_stop="48439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAA-GGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACT</genome_strand>
        <mrna_strand>ACGAG-GCCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268318" ref_strand="+" ref_description="SGN-E268318 [cLEI-13-A21]">
      <seq>cagcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47666" stop="48908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47966" g_stop="48442" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48608" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="526" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E268318" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47966" e_stop="48442"/>
          <exon e_start="48560" e_stop="48608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCA</genome_strand>
        <mrna_strand>CAGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206959" ref_strand="+" ref_description="SGN-E206959 [cLEC-33-C24]">
      <seq>agcatccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtcggctctcagaaccatacaagggaattggtgattgtttcggtacgacaattaacgaagaaggttttgggtctttatggagaggaaacactgctaatgttatacgttatttccccactcaggccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47667" stop="48743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47967" g_stop="48442" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48565" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="482" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E206959" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47967" e_stop="48442"/>
          <exon e_start="48560" e_stop="48565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTG</genome_strand>
        <mrna_strand>AGCATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTCGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTACGACAATTAACGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATACGTTATTTCCCCACTCAG.....................................................................................................................GCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306722" ref_strand="+" ref_description="SGN-E306722 [cLEY-19-I4]">
      <seq>catccaactgttttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgacttactcatgggtggtgtttctgctgctgtatcaaagaccgatgctgcccctattgagcgtgtgaaactatgggtccctgatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgatttgtttcggtaggacaattaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47669" stop="48678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47969" g_stop="48378" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E306722" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47969" e_stop="48378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGA-TTGTTTCGGGAGGACAATTAAGGA</genome_strand>
        <mrna_strand>CATCCAACTGTTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTACTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGATGCTGCCCCTATTGAGCGTGTGAAACTATGGGTCCCTGATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTTGTTTCGGTAGGACAATTAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570381" ref_strand="+" ref_description="SGN-E570381 [14957]">
      <seq>atccaactgttttccagaatgcagctaatcagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgtctcacctgtgtttgtgcacgctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgtccctattgagcgtgtgaaactattgatccaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47670" stop="48599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47970" g_stop="48299" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E570381" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47970" e_stop="48299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATC</genome_strand>
        <mrna_strand>ATCCAACTGTTTTCCAGAATGCAGCTAATCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGTCTCACCTGTGTTTGTGCACGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGTCCCTATTGAGCGTGTGAAACTATTGATCCAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697846" ref_strand="+" ref_description="SGN-E697846 [FA04BH06]">
      <seq>ccattggtttccagaaggcagcaaaccagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47673" stop="49230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47973" g_stop="48442" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48927" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="838" r_length="368" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E697846" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47973" e_stop="48442"/>
          <exon e_start="48560" e_stop="48927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCT</genome_strand>
        <mrna_strand>CCATTGGTTTCCAGAAGGCAGCAAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558566" ref_strand="+" ref_description="SGN-E558566 [17926]">
      <seq>agaaggcagctaacagctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaaagtggtttgctggcaacctttgcctcaggtggtgctgctggtgcttcttctttgtctttgtctactcttggactatgctcgtacccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47685" stop="49021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47985" g_stop="48442" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48721" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="619" r_length="162" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E558566" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47985" e_stop="48442"/>
          <exon e_start="48560" e_stop="48721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGG-AAGTGGTTTGCTGGAAACC-TTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGT</genome_strand>
        <mrna_strand>AGAAGGCAGCTAA-CAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAAGTGGTTTGCTGGCAACCTTTGCCTCAGGTGGTGCTGCTGGTGCTTCTTCTTTG-TCTTTGTCTACT-CTTGGACTATGCTCGTACCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255599" ref_strand="+" ref_description="SGN-E255599 [cLEG-36-K2]">
      <seq>ctgcacttgcgctctagtgtatccggggatgttcatgctcgctatgggggccttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcacgatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47702" stop="48721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48002" g_stop="48421" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E255599" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48002" e_stop="48421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTT</genome_strand>
        <mrna_strand>CTGCACTTGCGCTCTAGTGTATCCGGGGATGTTCATGCTCGCTATGGGGGCCTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCACGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270005" ref_strand="+" ref_description="SGN-E270005 [cLEM-7-F16]">
      <seq>ctgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47702" stop="48614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48002" g_stop="48314" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E270005" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48002" e_stop="48314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCA</genome_strand>
        <mrna_strand>CTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264077" ref_strand="+" ref_description="SGN-E264077 [cLEG-64-K17]">
      <seq>tgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaagtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47703" stop="49035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48003" g_stop="48442" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48735" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="616" r_length="176" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E264077" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48003" e_stop="48442"/>
          <exon e_start="48560" e_stop="48735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGC</genome_strand>
        <mrna_strand>TGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAAGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285759" ref_strand="+" ref_description="SGN-E285759 [cLES-5-O23]">
      <seq>tgcacttgcgctctagtctatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47703" stop="48639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48003" g_stop="48339" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E285759" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48003" e_stop="48339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATA</genome_strand>
        <mrna_strand>TGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E563291" ref_strand="+" ref_description="SGN-E563291 [1732]">
      <seq>tatcccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctggtgtttgtgcaggctcctcaagagaaaggatttgcaacttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47721" stop="48598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48021" g_stop="48298" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E563291" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E563291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48021" e_stop="48298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCT-GTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAAT</genome_strand>
        <mrna_strand>TATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAACTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698033" ref_strand="+" ref_description="SGN-E698033 [FA05AC03]">
      <seq>cctttgatgtccatgctcgctatgggggcgttcagcctgctatctaccagaggcattttgcttatggcaactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggcgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgcggaatcaacatttcatgtgttggtatcattgtttaccgtggtttgtacttttggaatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47729" stop="49191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48024" g_stop="48442" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48891" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="752" r_length="333" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E698033" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48024" e_stop="48442"/>
          <exon e_start="48560" e_stop="48891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTAC-TTTGGAATGTA</genome_strand>
        <mrna_strand>CCTTTGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGCGGAATCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTTGGAATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264743" ref_strand="+" ref_description="SGN-E264743 [cLEG-71-C10]">
      <seq>cccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcatgatctatcattgatcacctcacacgcctcacctgagtttgagcacgctcctcaacagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccataatctagatgagatgctcacggctggtatgctctcacaaccatacaagggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47724" stop="48648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48024" g_stop="48348" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E264743" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48024" e_stop="48348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAAT</genome_strand>
        <mrna_strand>CCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCATGATCTATCATTGATCACCTCACACGCCTCACCTGAGTTTGAGCACGCTCCTCAACAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCATAATCTAGATGAGATGCTCACGGCTGGTATGCTCTCACAACCATACAAGGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706400" ref_strand="+" ref_description="SGN-E706400 [FA29DD10]">
      <seq>ccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47725" stop="49629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48025" g_stop="48442" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="790" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49329" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="791" r_stop="829" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E706400" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48025" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATC</genome_strand>
        <mrna_strand>CCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260277" ref_strand="+" ref_description="SGN-E260277 [cLEG-53-H20]">
      <seq>ccaagatgtccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47725" stop="49035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48025" g_stop="48442" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48735" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="594" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E260277" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48025" e_stop="48442"/>
          <exon e_start="48560" e_stop="48735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGC</genome_strand>
        <mrna_strand>CCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250152" ref_strand="+" ref_description="SGN-E250152 [cLEG-11-G1]">
      <seq>ccatgctcgctatgggggcgttcagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47734" stop="49035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48034" g_stop="48442" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48735" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="585" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E250152" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48034" e_stop="48442"/>
          <exon e_start="48560" e_stop="48735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGC</genome_strand>
        <mrna_strand>CCATGCTCGCTATGGGGGCGTTCAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307241" ref_strand="+" ref_description="SGN-E307241 [cLEY-12-C15]">
      <seq>atgctcgctatgggggcgtacagcctgctatttaccagaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47736" stop="48718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48036" g_stop="48418" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E307241" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48036" e_stop="48418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAAT</genome_strand>
        <mrna_strand>ATGCTCGCTATGGGGGCGTACAGCCTGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718632" ref_strand="+" ref_description="SGN-E718632 [FC05BA09]">
      <seq>gttatgggggcgttcagcctgctatttaccataggcattttgcttatggcaactactccaatgctggactgcatagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcaacttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaataccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggttggtaggctctcaaaaccctacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttggttctttatggagaggaaacactgctaatgttatccgttatttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47742" stop="48736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48042" g_stop="48436" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E718632" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48042" e_stop="48436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCC</genome_strand>
        <mrna_strand>GTTATGGGGGCGTTCAGCCTGCTATTTACCATAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCATAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAACTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAATACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGTTGGTAGGCTCTCAAAACCCTACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGTTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697276" ref_strand="+" ref_description="SGN-E697276 [FA02AC09]">
      <seq>cccttatatttaccagaggcattttgcttatggcaactactcccttgctggactgcataaaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcacaaccatacaagggaattggtgattgtttcggtaggaccattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaaaggaggtgagaggcagttcagtggtttggttgatgtctacaagaacacactccaatctgatggaattgctggtctataccgtggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47759" stop="49137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48058" g_stop="48442" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48837" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="663" r_length="278" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E697276" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48058" e_stop="48442"/>
          <exon e_start="48560" e_stop="48837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATT</genome_strand>
        <mrna_strand>CCCTTATATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCCTTGCTGGACTGCATAAAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCACAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACCATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAAGGAGGTGAGAGGCAGTTCAGTGGTTTGGTTGATGTCTACAAGAACACACTCCAATCTGATGGAATTGCTGGTCTATACCGTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206807" ref_strand="+" ref_description="SGN-E206807 [cLEC-33-C7]">
      <seq>tgctatttaccagaggcattttgcttatggcaactactccaatgctggactgccgagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgcggctgcccctattgagcttgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtcggacaattaaggaagaaggatttgggtccttatggagaggaaacactgctaatgctatccgccatttccccactcacgccctgaactatgcattcacggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaagaggtgctgctggtgcttcctctttgagctttgactactccttggactatgctcgtacccgtcttgctaatgatgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47761" stop="49037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48061" g_stop="48442" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.90"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48737" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="560" r_length="178" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E206807" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48061" e_stop="48442"/>
          <exon e_start="48560" e_stop="48737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCA</genome_strand>
        <mrna_strand>TGCTATTTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCCGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCGGCTGCCCCTATTGAGCTTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTCGGACAATTAAGGAAGAAGGATTTGGGTCCTTATGGAGAGGAAACACTGCTAATGCTATCCGCCATTTCCCCACTCAC.....................................................................................................................GCCCTGAACTATGCATTCACGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAAGAGGTGCTGCTGGTGCTTCCTCTTTGAGCTTTGACTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457624" ref_strand="+" ref_description="SGN-E457624 [cPRO-3-A24]">
      <seq>tttaccggaggcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggacttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccttgcctcaggtggtgctgctggtgcttcttctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaagtgagaggcagttcaatggtttggttgatgtctacaggaagacacttaaatctgatggaattgctggtctataccgtggattcacatttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47766" stop="49148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48066" g_stop="48442" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48848" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="665" r_length="288" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E457624" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48066" e_stop="48442"/>
          <exon e_start="48560" e_stop="48848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCAT</genome_strand>
        <mrna_strand>TTTACCGGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGACTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCCTCAGGTGGTGCTGCTGGTGCTTCTTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAAGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTTAAATCTGATGGAATTGCTGGTCTATACCGTGGATTC-ACATTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325163" ref_strand="+" ref_description="SGN-E325163 [cTOC-13-P9]">
      <seq>gcattttgcttatggcaactactccaatgctggactgcagagaggccaagccactcaagatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47776" stop="48614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48076" g_stop="48314" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E325163" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48076" e_stop="48314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCA</genome_strand>
        <mrna_strand>GCATTTTGCTTATGGCAACTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAAGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312902" ref_strand="+" ref_description="SGN-E312902 [cTOA-8-D10]">
      <seq>cttatggcaactactccaatgctgggcggcatataggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcangaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47784" stop="49080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48084" g_stop="48442" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48780" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="580" r_length="221" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E312902" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48084" e_stop="48442"/>
          <exon e_start="48560" e_stop="48780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGT</genome_strand>
        <mrna_strand>CTTATGGCAACTACTCCAATGCTGGGCGGCATATAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCANGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279295" ref_strand="-" ref_description="SGN-E279295 [cLEL-4-D19](-)">
      <seq>gcacgagctactccaatgctggactgcagagaggccaagccactcaggatctatcattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaatgaccgtgatggctactggaagtgggttgctggaaacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47792" stop="48952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48087" g_stop="48442" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48652" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="449" r_length="93" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E279295" ref_strand="-">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279295" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48087" e_stop="48442"/>
          <exon e_start="48560" e_stop="48652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTT</genome_strand>
        <mrna_strand>GCACGAGCTACTCCAATGCTGGACTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAATGACCGTGATGGCTACTGGAAGTGGGTTGCTGGAAACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259811" ref_strand="+" ref_description="SGN-E259811 [cLEG-51-C16]">
      <seq>aactactccaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggngcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47792" stop="49033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48092" g_stop="48442" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48733" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="525" r_length="174" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E259811" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48092" e_stop="48442"/>
          <exon e_start="48560" e_stop="48733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGAT</genome_strand>
        <mrna_strand>AACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGNGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690299" ref_strand="+" ref_description="SGN-E690299 [LH_Ea03C09]">
      <seq>aaatgctgctctgcagagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagactgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttccggaggacaattaaggaagaaggttttgggactttatggagaggaaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47801" stop="48712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48100" g_stop="48412" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E690299" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48100" e_stop="48412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACT</genome_strand>
        <mrna_strand>AAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACTGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCCGGAGGACAATTAAGGAAGAAGGTTTTGGGACTTTATGGAGAGGAAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579775" ref_strand="+" ref_description="SGN-E579775 [86907]">
      <seq>gagaggccaagccactcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggattggcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccttgcctcaggtggtgctgctggtgcttcttctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgacgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacacttaaatctgatggaattgctggtctataccgtggattccacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctctttgacaggaaacctgcacggatagttttctttgctagctttggacttggtttggctcatcaaccaatggtgctggtctttgcttcttacccaatttgatacagtaagaagaacgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47815" stop="49682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48115" g_stop="48442" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="702" r_length="374" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49378" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="795" r_length="93" r_score="0.864"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E579775" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48115" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTC-TTGACAGGAAACCTGCA-GGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAG-TTTCTTTGCTAGCTTTGCACTTGG-TTGGCTCATC-ACCAATGGTGCTGGTC-TTGCTTCTTACCCCA-TTGATACAGTAAGAAGAA</genome_strand>
        <mrna_strand>GAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTGGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCCTCAGGTGGTGCTGCTGGTGCTTCTTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGACGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTTAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCCACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTTGACAGGAAACCTGCACG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTTCTTTGCTAGCTTTGGACTTGGTTTGGCTCATCAACCAATGGTGCTGGTCTTTGCTTCTTACCCAATTTGATACAGTAAGAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366317" ref_strand="+" ref_description="SGN-E366317 [cLPT-1-C9]">
      <seq>tcaggatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcgcctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcatttaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47830" stop="49160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48130" g_stop="48442" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48860" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="614" r_length="301" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E366317" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48130" e_stop="48442"/>
          <exon e_start="48560" e_stop="48860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCA</genome_strand>
        <mrna_strand>TCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCGCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTTAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E563457" ref_strand="+" ref_description="SGN-E563457 [1898]">
      <seq>gatctatcattgatcacctcaaatgcctcacctgtgtttgtgcaggctcctcaagagcaaaggatttgcagcttttgccactgactttctcatgggtggggttctgctgctgtatcaaagaccagctgctggccctattgagcgtgtgaaactattgatccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47834" stop="48596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48134" g_stop="48296" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E563457" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>163</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E563457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48134" e_stop="48296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAG-AAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACC-GCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAA</genome_strand>
        <mrna_strand>GATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGCAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGG-GGTTCTGCTGCTGTATCAAAGACCAGCTGCTGGCCCTATTGAGCGTGTGAAACTATTGATCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703915" ref_strand="+" ref_description="SGN-E703915 [FA22DD01]">
      <seq>cgattgatcacctcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47842" stop="49735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48140" g_stop="48442" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="675" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49435" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="820" r_length="145" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E703915" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48140" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCT</genome_strand>
        <mrna_strand>CGATTGATCACCTCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701143" ref_strand="+" ref_description="SGN-E701143 [FA15AF03]">
      <seq>cctcttatgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggcgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttangaatganggtcccaaatctctgttcaaaggtgctggtgctaacatcctccgagctgttgctggtgctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47850" stop="49818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48150" g_stop="48442" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="665" r_length="372" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49518" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="893" r_length="228" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E701143" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>893</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48150" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGT</genome_strand>
        <mrna_strand>CCTCTTATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTANGAATGANGGTCCCAAATCTCTGTTCAAAGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311802" ref_strand="+" ref_description="SGN-E311802 [cLEZ-9-H21]">
      <seq>tcaaacgcctcacctgtgtttgtgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47852" stop="49129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48152" g_stop="48442" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48829" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="561" r_length="270" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E311802" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48152" e_stop="48442"/>
          <exon e_start="48560" e_stop="48829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATAC</genome_strand>
        <mrna_strand>TCAAACGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559701" ref_strand="+" ref_description="SGN-E559701 [19240]">
      <seq>caaatgcctcacctgtgtttgtgcaggctcctcaagagaaaggattggcagcttttgccactgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccttgcctcaggtggtgctgctggtgcttcttctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgacgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacacttaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47853" stop="49216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48153" g_stop="48442" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48916" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="647" r_length="357" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E559701" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48153" e_stop="48442"/>
          <exon e_start="48560" e_stop="48916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTG</genome_strand>
        <mrna_strand>CAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTGGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCCTCAGGTGGTGCTGCTGGTGCTTCTTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGACGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTTAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709899" ref_strand="+" ref_description="SGN-E709899 [FA53CD05]">
      <seq>ccgttgcaggctcctcaagagaaaggatttgcagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47874" stop="49760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48170" g_stop="48442" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="645" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49460" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="815" r_length="170" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E709899" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48170" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCC</genome_strand>
        <mrna_strand>CCGTTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264964" ref_strand="+" ref_description="SGN-E264964 [cLEI-10-N5]">
      <seq>cagcttttgccactgactttctcatgggtggtgtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgattaccgtggtttgtactttggaatgtacgactccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47901" stop="49201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48201" g_stop="48442" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48901" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="584" r_length="342" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E264964" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48201" e_stop="48442"/>
          <exon e_start="48560" e_stop="48901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTG</genome_strand>
        <mrna_strand>CAGCTTTTGCCACTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGATTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704294" ref_strand="+" ref_description="SGN-E704294 [FA23DE12]">
      <seq>ctgactttctcatgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggcgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgaaggtcccaaatctctgttcaagggtgctggtgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47913" stop="49789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48213" g_stop="48442" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="602" r_length="372" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49489" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="801" r_length="199" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E704294" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48213" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTA</genome_strand>
        <mrna_strand>CTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAAGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567272" ref_strand="+" ref_description="SGN-E567272 [11371]">
      <seq>catgggtggagtttctgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaaggtgaattggcgaatgttttgggaggacaattaaggaagaaggtttcgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcatgcccttaactttgcattcaagggactacttcaagagactcttcaacttccagaaggaccgtgatggctactggaagtggtttgctggcaaacttgcctcaggtggtgctgctgggtgcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47923" stop="48978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48223" g_stop="48442" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48671" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="334" r_length="113" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E567272" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48223" e_stop="48442"/>
          <exon e_start="48560" e_stop="48671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGG-GAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAA-GGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTG</genome_strand>
        <mrna_strand>CATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGTGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTCGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAT.....................................................................................................................GCCCTTAACTTTGCATTCAAGGGACTACTTCAAGAGACTCTTCAACTTCCAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAAACTTGCCTCAGGTGGTGCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301538" ref_strand="+" ref_description="SGN-E301538 [cLEW-23-K24]">
      <seq>tgctgctgtatcaaagaccgctgctgcccctattgagcgtgtgtaactattgatccaaaatcaacatgagatgctcaaggctggtaggctgtcagaaccatacaagggaatcggcgattgtttcgggaggacaattaaagaagaaggttttgcgtctttatggagaggaaacactgctaatgttatccgttattttcccactcatgccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgattgctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttgtgtgcctactccttgtactatgctcgtacccgtcttgctaatgatgccaaggcttctaagaagggaggcgagaggcacttcaatggtttggttgatgtctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47938" stop="49091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48238" g_stop="48442" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.96"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48791" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="437" r_length="232" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E301538" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48238" e_stop="48442"/>
          <exon e_start="48560" e_stop="48791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACA</genome_strand>
        <mrna_strand>TGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGTAACTATTGATCCAAAATCAACATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATCGGCGATTGTTTCGGGAGGACAATTAAAGAAGAAGGTTTTGCGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTTCCCACTCAT.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATTGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTGTGTGCCTACTCCTTGTACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCTAAGAAGGGAGGCGAGAGGCACTTCAATGGTTTGGTTGATGTCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704647" ref_strand="+" ref_description="SGN-E704647 [FA24DE05]">
      <seq>cccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagactgatgatgacatctggtgaggcggtgaagcacacgagctcgcttgatgcattctccccgattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatataaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47964" stop="49837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48264" g_stop="48442" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="551" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49537" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="798" r_length="247" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E704647" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48264" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACA</genome_strand>
        <mrna_strand>CCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGACTGATGATGACATCTGGTGAGGCGGTGAAGCACACGAGCTCGCTTGATGCATTCTCCCCGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704653" ref_strand="+" ref_description="SGN-E704653 [FA24DE11]">
      <seq>cccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagcctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47964" stop="49822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48264" g_stop="48442" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="551" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49522" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="784" r_length="233" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E704653" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48264" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAG-CTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGT</genome_strand>
        <mrna_strand>CCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591668" ref_strand="+" ref_description="SGN-E591668 [45385]">
      <seq>cccctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccttgcctcaggtggtgctgctggtgcttcttctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgacgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaagaagacacttaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttatactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttggacttggttggctcatcaccaatggtgctggtcttgcttcttacccaattgatacagtaagaagaagaatgatgatgacatctggtgaggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47964" stop="49704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48264" g_stop="48442" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="551" r_length="372" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49404" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="665" r_length="114" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E591668" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48264" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCG</genome_strand>
        <mrna_strand>CCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCCTCAGGTGGTGCTGCTGGTGCTTCTTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGACGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAAGAAGACACTTAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTATACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGGACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCAATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702590" ref_strand="+" ref_description="SGN-E702590 [FA19AF04]">
      <seq>ctattgagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcctaagtcagcctcgtaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47967" stop="49903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48267" g_stop="48442" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="548" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49603" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="861" r_length="313" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E702590" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48267" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACAT</genome_strand>
        <mrna_strand>CTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590440" ref_strand="+" ref_description="SGN-E590440 [44036]">
      <seq>gagcgtgtgaaactattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccttgcctcaggtggtgctgctggtgcttcttctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgacgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacacttaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttgcgtatcattgtttacccgtggtttgtaactttggaatgtacgactcccttgaagccctgtcctcttgacaggaaacctgcagatagtttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47972" stop="49241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48272" g_stop="48442" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48927" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="544" r_length="373" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E590440" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48272" e_stop="48442"/>
          <exon e_start="48560" e_stop="48927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTG-GTATCATTGTTTA-CCGTGGTTTGT-ACTTTGGAATGTACGACT-CCTTGAAG-CCTGTCCTCTTGACAGGAAACCT</genome_strand>
        <mrna_strand>GAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCCTCAGGTGGTGCTGCTGGTGCTTCTTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGACGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTTAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGCGTATCATTGTTTACCCGTGGTTTGTAACTTTGGAATGTACGACTCCCTTGAAGCCCTGTCCTCTTGACAGGAAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323633" ref_strand="+" ref_description="SGN-E323633 [cTOC-2-N2]">
      <seq>aactattgatccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggcgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgcacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47982" stop="49618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48282" g_stop="48442" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="533" r_length="372" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49318" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="561" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E323633" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48282" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTG</genome_strand>
        <mrna_strand>AACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455956" ref_strand="+" ref_description="SGN-E455956 [cSTS-28-I1]">
      <seq>tattgatccaaaatcaagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccttgcctcaggtggtgctgctggtgcttcttctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgacgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaagaagacacttaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttatactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttggacttggttggctcatcaccaatggtgctggtcttgcttcttacccaattgatacagtaagaaagagaatgatgatgacatctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47985" stop="49698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48285" g_stop="48442" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="530" r_length="372" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49398" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="638" r_length="108" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E455956" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48285" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGT</genome_strand>
        <mrna_strand>TATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCCTCAGGTGGTGCTGCTGGTGCTTCTTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGACGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAAGAAGACACTTAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTATACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGGACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCAATTGATACAGTAAGAAAGAGAATGATGATGACATCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328115" ref_strand="+" ref_description="SGN-E328115 [cTOC-22-D10]">
      <seq>tccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggcgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgcacttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacnagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47991" stop="49769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48291" g_stop="48442" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="524" r_length="372" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49469" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="703" r_length="179" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E328115" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48291" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCT</genome_strand>
        <mrna_strand>TCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACNAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328119" ref_strand="+" ref_description="SGN-E328119 [cTOC-22-D18]">
      <seq>tccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggcgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgcacttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47991" stop="49737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48291" g_stop="48442" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="524" r_length="372" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49437" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="671" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E328119" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48291" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCC</genome_strand>
        <mrna_strand>TCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328660" ref_strand="+" ref_description="SGN-E328660 [cTOC-23-E7]">
      <seq>tccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggcgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcangatagtttctttgctagctttgcacttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47991" stop="49700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48291" g_stop="48442" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="524" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49400" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="634" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E328660" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48291" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGA</genome_strand>
        <mrna_strand>TCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAN.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328527" ref_strand="+" ref_description="SGN-E328527 [cTOC-23-E6]">
      <seq>tccaaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggcgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgcacttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47991" stop="49696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48291" g_stop="48442" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="524" r_length="372" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49396" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="630" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E328527" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48291" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTG</genome_strand>
        <mrna_strand>TCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292887" ref_strand="+" ref_description="SGN-E292887 [cLET-11-J11]">
      <seq>caaaatcaagatgagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggcgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcangatagtttctttgctagctttgcacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="47993" stop="49618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48293" g_stop="48442" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="522" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49318" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="550" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E292887" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48293" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTG</genome_strand>
        <mrna_strand>CAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAN.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698069" ref_strand="+" ref_description="SGN-E698069 [FA05AF08]">
      <seq>cgctttagatgagatgctcaaggctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttccagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48001" stop="49831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48295" g_stop="48442" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="520" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49531" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="761" r_length="241" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E698069" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48295" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGAT</genome_strand>
        <mrna_strand>CGCTTTAGATGAGATGCTCAAGGCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCCAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692468" ref_strand="+" ref_description="SGN-E692468 [LH_Ea08M18]">
      <seq>cgttatcgtgccgaattcggcacgaggagatgagatgctcacgtctggtaggctctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttggttctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaactttaagaaggaccgtgatggctactggaagtggtttgctggcaaccttgcatcaggtggtgctgctggtgcttcctctttgttctttgtctactccttggattatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggtatgtatgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgcacttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaaacttcaggttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48001" stop="49850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48303" g_stop="48442" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="169" r_length="140" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="541" r_length="372" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49550" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="801" r_length="260" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E692468" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48303" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCT</genome_strand>
        <mrna_strand>ATGAGATGCTCACGTCTGGTAGGCTCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGTTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTTAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCATCAGGTGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGATTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGTATGTATGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAACTTCAGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252470" ref_strand="+" ref_description="SGN-E252470 [cLEG-20-E5]">
      <seq>ccgggctgcacggagatgctcaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttggggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggcgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48005" stop="49132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48308" g_stop="48442" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="150" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48832" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="423" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E252470" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48308" e_stop="48442"/>
          <exon e_start="48560" e_stop="48832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGT</genome_strand>
        <mrna_strand>ATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTGGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709488" ref_strand="+" ref_description="SGN-E709488 [FA52AG09]">
      <seq>cgctaaggctggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggcgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcctaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48010" stop="49890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48309" g_stop="48442" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="505" r_length="372" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49590" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="805" r_length="300" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E709488" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48309" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTC</genome_strand>
        <mrna_strand>CGCT-AAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326092" ref_strand="+" ref_description="SGN-E326092 [cTOC-16-J7]">
      <seq>tggtaggctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaatgaataatgttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttctagaatgatcgtgatggctactggaagtggtttgctggaaaccttgcatcaagaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttctaagaacggatgctagaggcagttcaatggattggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaatcctgtcctcttgacaggaaatctgcaagatagtttctttgctagctttgcacttggatggctcatcaccaatggtgctggtcttgcttcttactccattgataccgtacgaggaagaatgatgatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48019" stop="49692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48319" g_stop="48442" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="496" r_length="372" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49392" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="598" r_length="102" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E326092" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48319" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACA</genome_strand>
        <mrna_strand>TGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAATGAATAATGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCTAGAATGATCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAAGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCTAAGAACGGATGCTAGAGGCAGTTCAATGGATTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAATCCTGTCCTCTTGACAGGAAATCTGCAA.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCACTTGGATGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACTCCATTGATACCGTACGAGGAAGAATGATGATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556904" ref_strand="+" ref_description="SGN-E556904 [cTSD-4-P20]">
      <seq>tggatcccccgggctgcaggcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48025" stop="49841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48325" g_stop="48442" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="133" r_length="118" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="505" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49541" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="756" r_length="251" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E556904" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48325" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCT</genome_strand>
        <mrna_strand>GCAGGCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210263" ref_strand="+" ref_description="SGN-E210263 [cLEC-35-E23]">
      <seq>ctgtcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48026" stop="49033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48326" g_stop="48442" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48733" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="291" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E210263" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48326" e_stop="48442"/>
          <exon e_start="48560" e_stop="48733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGAT</genome_strand>
        <mrna_strand>CTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241577" ref_strand="+" ref_description="SGN-E241577 [cLED-36-C9]">
      <seq>tctcagaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48027" stop="49162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48327" g_stop="48442" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48862" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="419" r_length="303" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E241577" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48327" e_stop="48442"/>
          <exon e_start="48560" e_stop="48862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATT</genome_strand>
        <mrna_strand>TCTCAGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701173" ref_strand="+" ref_description="SGN-E701173 [FA15AH09]">
      <seq>agaaccatacaagggaattggtgattgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcctaagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttggtgttacatttgagtattcagttggggagacatttatcatttttccttttgacttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48031" stop="49998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48331" g_stop="48442" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="484" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49698" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="892" r_length="408" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E701173" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48331" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTT</genome_strand>
        <mrna_strand>AGAACCATACAAGGGAATTGGTGATTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGACTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310072" ref_strand="+" ref_description="SGN-E310072 [cLEZ-8-I20]">
      <seq>ctcgtgccgaattcggcacgaggcagaaccatacaagggaattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggcgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgcacttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48028" stop="49694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48333" g_stop="48442" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="136" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="508" r_length="372" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49394" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="612" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E310072" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48333" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATC</genome_strand>
        <mrna_strand>AACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708201" ref_strand="+" ref_description="SGN-E708201 [FA35AE03]">
      <seq>cggtattggcgattgtttcgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggcgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcctaagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttggtgttacatttgagtattcagttggggaagacaattatcattattccttttgccttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48044" stop="49998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48343" g_stop="48442" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="472" r_length="372" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49698" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="881" r_length="409" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E708201" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48343" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGG-AGACAATTATCATTATTCCTTTTGCCTTTTTTT</genome_strand>
        <mrna_strand>CGGTATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAAGACAATTATCATTATTCCTTTTGCCTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589746" ref_strand="+" ref_description="SGN-E589746 [43327]">
      <seq>ggcgaatgttttgggaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccttgcctcaggtggtgctgctggtgcttcttctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgacgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaagaagacacttaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttatactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttggacttggttggctcatcaccaatggtgctggtcttgcttcttacccaattgatacagtaagaagaagaatgatgatgacatctggtgaggcggttaagtacaagagctcgctcgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgccggtgctggtgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48050" stop="49822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48350" g_stop="48442" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="465" r_length="372" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49522" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="697" r_length="232" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E589746" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48350" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGT</genome_strand>
        <mrna_strand>GGCGAATGTTTTGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCCTCAGGTGGTGCTGCTGGTGCTTCTTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGACGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAAGAAGACACTTAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTATACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGGACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCAATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTTAAGTACAAGAGCTCGCTCGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCCGGTGCTGGTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708286" ref_strand="+" ref_description="SGN-E708286 [FA35BD09]">
      <seq>ctgtttgtttcggtaggacaattaaggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcctaagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttggtgttacatttgagtattcagttgggggagacatttatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48051" stop="49978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48351" g_stop="48442" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="464" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49678" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="853" r_length="389" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E708286" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48351" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTT-GGGGAGACAATTATCAT</genome_strand>
        <mrna_strand>CTGTTTGTTTCGGTAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGGAGACATTTATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698230" ref_strand="+" ref_description="SGN-E698230 [FA05CF08]">
      <seq>ggaagaaggttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48076" stop="49854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48376" g_stop="48442" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="439" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49554" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="703" r_length="264" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E698230" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48376" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTT</genome_strand>
        <mrna_strand>GGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730803" ref_strand="+" ref_description="SGN-E730803 [LA25BA06]">
      <seq>cgttttgggtctttatggagaggaaacactgctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcctaagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttggtgttacatttgagtatttcagttggggagacatttatcatttttccttttgacttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48084" stop="49996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48383" g_stop="48442" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="432" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49696" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="839" r_length="407" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E730803" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48383" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTA-TTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTT</genome_strand>
        <mrna_strand>CGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGACTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556987" ref_strand="+" ref_description="SGN-E556987 [cTSD-2-C4]">
      <seq>tgcagtggggactgtatcctactagtcatcttatgataagagtcttcggctcttttgtggtcaggaaatactgcataatgttatccgtatatttccccactcaagccctgaactttgcattcaaggactacttctagatactcttcggcttcgacaaggaccgcgatggctactggaagtggtttgctcggaaaccttgcatctggatgtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcctaagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatcttttggtgttacatttgagtattcagttggggagacatttatcatttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48248" stop="49983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48403" g_stop="48442" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="104" r_length="42" r_score="0.850"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.85"/>
            <acceptor a_prob="0.931" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="477" r_length="373" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49683" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="869" r_length="392" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E556987" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48403" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAACACTGC-TAATGTTATCCGT-TATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCT-GGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTC</genome_strand>
        <mrna_strand>AGGAAATACTGCATAATGTTATCCGTATATTTCCCCACTCAA.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCTAGATACTCTTCGGCTTCGACAAGGACCGCGATGGCTACTGGAAGTGGTTTGCTCGGAAACCTTGCATCTGGATGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATC-TTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E617616" ref_strand="+" ref_description="SGN-E617616 [66468]">
      <seq>ctaatgttatccgttatttccccactcaggccctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccttgcctcaggtggtgctgctggtgcttcttctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgacgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacacttaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttggacttggttggctcatcaccaatggtgctggtcttgcttcttacccaattgatacagtaagaagaagaatgatgatgacatctggtgaggcggttaagtacaagagctcactcgatgcattctcccagattgtcaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatccttccgagctgttgccggtgcgggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48114" stop="49820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48414" g_stop="48442" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117">
            <donor d_prob="0.924" d_score="0.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48560" g_stop="48931" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="401" r_length="372" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49291" g_stop="49520" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="632" r_length="231" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E617616" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E617616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48414" e_stop="48442"/>
          <exon e_start="48560" e_stop="48931"/>
          <exon e_start="49291" e_stop="49520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATGTTATCCGTTATTTCCCCACTCAGGTTTACCATTTGTCTTCATTTTGAGGGATGAAATTTATACATCAAAGATATATGCACATTTATTGTTCTGTTGTTTGTTTAAGTTGAGCATTGACTGACTGATGCTCTGCTCCACAGGCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCC-TCCGAGCTGTTGCTGGTGCTGGTGT</genome_strand>
        <mrna_strand>CTAATGTTATCCGTTATTTCCCCACTCAG.....................................................................................................................GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCCTCAGGTGGTGCTGCTGGTGCTTCTTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGACGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTTAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGGACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCAATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTTAAGTACAAGAGCTCACTCGATGCATTCTCCCAGATTGTCAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTTCCGAGCTGTTGCCGGTGCGGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600496" ref_strand="+" ref_description="SGN-E600496 [53508]">
      <seq>ctgaactttgcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccttgcctcaggtggtgctgctggtgcttcttctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgacgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaagaagacacttaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcatcgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttggacttggttggctcatcaccaatggtgctggtcttgcttcttacccaattgatacagtaagaagaagaatgatgatgacatctggtgaggcggttaagtacaagagttcgctcgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctacatcctccgagctgttgccggtgcgggtgtgttgggccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48263" stop="49828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48563" g_stop="48931" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49524" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="602" r_length="233" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E600496" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48563" e_stop="48931"/>
          <exon e_start="49291" e_stop="49524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTG</genome_strand>
        <mrna_strand>CTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCCTCAGGTGGTGCTGCTGGTGCTTCTTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGACGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAAGAAGACACTTAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATCGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGGACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCAATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTTAAGTACAAGAGTTCGCTCGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCT-ACATCCTCCGAGCTGTTGCCGGTGCGGGTGTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281621" ref_strand="+" ref_description="SGN-E281621 [cLER-14-I17]">
      <seq>gcattcaaggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggttagtgtttttatatgtttgctttgctctgctttttcatgtctttatacttctctggatgttatctctgctgtgtcttaccaaaatgttgttagtctttacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48272" stop="49326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48572" g_stop="49026" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E281621" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48572" e_stop="49026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGC-----AG-G---TTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCA</genome_strand>
        <mrna_strand>GCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTAGTGTTTTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284599" ref_strand="+" ref_description="SGN-E284599 [cLES-3-C16]">
      <seq>aggactacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaggagctcgcttgatgcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48279" stop="49735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48579" g_stop="48931" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49435" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="498" r_length="145" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E284599" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48579" e_stop="48931"/>
          <exon e_start="49291" e_stop="49435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCT</genome_strand>
        <mrna_strand>AGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E566978" ref_strand="+" ref_description="SGN-E566978 [11032]">
      <seq>gctacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccttggcctcaggtggtgctgctggtgcttcttctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgacgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacacttaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttggaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttggacttggttgggtcatcaccaatggtgctggtcttgcttctttaccaattgatacagtaagaagaagcactgatgatgacatctggtgaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48283" stop="49703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48582" g_stop="48931" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49403" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="466" r_length="114" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E566978" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E566978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48582" e_stop="48931"/>
          <exon e_start="49291" e_stop="49403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTT-GCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTT-GAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAG-AATGATGATGACATCTGGTGAGGC</genome_strand>
        <mrna_strand>GCTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGGCCTCAGGTGGTGCTGCTGGTGCTTCTTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGACGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTTAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGGACTTGGTTGGGTCATCACCAATGGTGCTGGTCTTGCTTCTTTACCAATTGATACAGTAAGAAGAAGCACTGATGATGACATCTGGTGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E566940" ref_strand="+" ref_description="SGN-E566940 [10987]">
      <seq>ctacttcaagagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccttgcctcaggtggtgctgctggtgcttcttctttgttctttgtctactccttggactatgctcgtacccgtcttggctaatgacgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacacttaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacagcgaaacctgcaggatagtttctttgctagctttggacttggttggctcatcaccaatggtgctggtcttggcttcttacccaattgatacagtaagaagaaggaatgatgatgacatctggtgaggcggtttaagtacaagagctcactcggattgcattctcccagaattgttaacgaatgaagggtcccaaatctctgtccaagggtgctggtgctaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48283" stop="49791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48583" g_stop="48931" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49491" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="560" r_length="209" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E566940" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E566940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48583" e_stop="48931"/>
          <exon e_start="49291" e_stop="49491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTT-GCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAG-GAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTT-GCTTCTTACCCCATTGATACAGTAAGAAGAA-GAATGATGATGACATCTGGTGAGGCGG-TGAAGTACAAGAGCTCGCT-TGA-TGCATTCTCCCAG-ATTGTTAA-GAATG-AGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAAC</genome_strand>
        <mrna_strand>CTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCCTCAGGTGGTGCTGCTGGTGCTTCTTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGGCTAATGACGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTTAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGCGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGGACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGGCTTCTTACCCAATTGATACAGTAAGAAGAAGGAATGATGATGACATCTGGTGAGGCGGTTTAAGTACAAGAGCTCACTCGGATTGCATTCTCCCAGAATTGTTAACGAATGAAGGGTCCCAAATCTCTGTCCAAGGGTGCTGGTGCTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460749" ref_strand="+" ref_description="SGN-E460749 [cPRO-32-C8]">
      <seq>gagactcttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccttgcctcaggtggtgctgctggtgcttcttctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgacgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaagaagacacttaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttatactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttggacttggttggctcatcaccaatggtgctggtcttgcttcttacccaattgatacagtaagaagaagaatgatgatgacatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48292" stop="49696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48592" g_stop="48931" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49396" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="446" r_length="106" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E460749" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48592" e_stop="48931"/>
          <exon e_start="49291" e_stop="49396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTG</genome_strand>
        <mrna_strand>GAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCCTCAGGTGGTGCTGCTGGTGCTTCTTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGACGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAAGAAGACACTTAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTATACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGGACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCAATTGATACAGTAAGAAGAAGAATGATGATGACATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590184" ref_strand="+" ref_description="SGN-E590184 [43774]">
      <seq>ttcaacttcaagaaggaccgtgatggctactggaagtggtttgctggcaaccttgcctcaggtggtgcggctggtgcttcttctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgacgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacacttaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttggacttggttggctcatcaccaatggtgctggtcttgcttcttacccaattgatacagtaagaagaagaatgatgatgacatctggtgaggcggttaagtacaagagctcactcgatgcattctcccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48299" stop="49740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48599" g_stop="48931" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49440" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="483" r_length="150" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E590184" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48599" e_stop="48931"/>
          <exon e_start="49291" e_stop="49440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAG</genome_strand>
        <mrna_strand>TTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCCTCAGGTGGTGCGGCTGGTGCTTCTTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGACGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTTAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGGACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCAATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTTAAGTACAAGAGCTCACTCGATGCATTCTCCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371558" ref_strand="-" ref_description="SGN-E371558 [TUS-29-C2](-)">
      <seq>cttcaagaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaggagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttggggagacatttatcatttttccttttgactttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48304" stop="49999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48604" g_stop="48931" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49699" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="737" r_length="409" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E371558" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371558" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48604" e_stop="48931"/>
          <exon e_start="49291" e_stop="49699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTT</genome_strand>
        <mrna_strand>CTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGACTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280470" ref_strand="-" ref_description="SGN-E280470 [cLER-1-A19](-)">
      <seq>gaaggaccgtgatggctactggaagtggtttgctggaaaccttgcatcaagaggtgctgctggtgcttcctctttggtctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtacttaggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagatgaagaatgatgatgacatctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48310" stop="49699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48610" g_stop="48931" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49399" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="431" r_length="109" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E280470" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280470" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48610" e_stop="48931"/>
          <exon e_start="49291" e_stop="49399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTG</genome_strand>
        <mrna_strand>GAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAAGAGGTGCTGCTGGTGCTTCCTCTTTGGTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTAGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGATGAAGAATGATGATGACATCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418629" ref_strand="-" ref_description="SGN-E418629 [STM-27-N22]">
      <seq>tgatggctactggaagtggtttgctggcaaccttgcctcaggtggtgctgctggtgcttcttctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgacgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaagaagacacttaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttatactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttggacttggttggctcatcaccaatggtgctggtcttgcttcttacccaattgatacagtaagaagaagaatgatgatgacatctggtgaggcggttaagtacaagagctcgctcgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgccggtgctggtgtgttggccggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggcggtgcctaagttggcctcgtaacatccttttagaattagatggtgatgaaaatctttttggtgttgcatttgagtattcagttggggagacaattatcatttttccttttgcctttttgtaataattcaaaatcttattagagtgggttaaagcttaaaaaccccacacttgtttcccttgttgaagggttattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48319" stop="50077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48619" g_stop="48931" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49777" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="796" r_length="483" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E418629" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418629" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48619" e_stop="48931"/>
          <exon e_start="49291" e_stop="49777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCC-TTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAA-AATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTA</genome_strand>
        <mrna_strand>TGATGGCTACTGGAAGTGGTTTGCTGGCAACCTTGCCTCAGGTGGTGCTGCTGGTGCTTCTTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGACGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAAGAAGACACTTAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTATACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGGACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCAATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTTAAGTACAAGAGCTCGCTCGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCCGGTGCTGGTGTGTTGGCCGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGCGGTGCCTAAGTTGGCCTCGTAACATCCTTTTAGAA-TTAGATGGTGATGAAAATCTTTTTGGTGTTGCATTTGAGTATTCAGTTGGGGAGACAATTATCATTTTTCCTTTTGCC-----TTTTTGTAATAATTCAAAATCTTATTAGAGTGGGTTAAAGCTTAAAAACCCCACACTTGTTTCCCTTGTTGAAGGGTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E565290" ref_strand="+" ref_description="SGN-E565290 [3730]">
      <seq>ggctactggaagtggtttgctggcaaccttgcctcagtggtgctgctggtgcttcttctttgttctttgtctactccttgactatgctcgtacccgtcttgctaatgacgccaagcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaagaagacacttaaatctgatggaattgctggtctataccgtgcgattcaacatttcatgtgttggtatcattgtttaccgtggtttatactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttggacttggttggctcatcaccaatggtgctggtcttgcttctgtacccaattgatacagtaagaagaagaatgatgatgacatctgggtgaggcggttaagtacaagagctcgctcgatgcattctcccaagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48323" stop="49794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48623" g_stop="48931" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49494" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="514" r_length="207" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E565290" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E565290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48623" e_stop="48931"/>
          <exon e_start="49291" e_stop="49494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTG-GATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCT-TACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCT-GGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCC-AGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATC</genome_strand>
        <mrna_strand>GGCTACTGGAAGTGGTTTGCTGGCAACCTTGCCTCA-GTGGTGCTGCTGGTGCTTCTTCTTTGTTCTTTGTCTACTCCTT-GACTATGCTCGTACCCGTCTTGCTAATGACGCCAA-GCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAAGAAGACACTTAAATCTGATGGAATTGCTGGTCTATACCGTGCGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTATACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGGACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTGTACCCAATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGGTGAGGCGGTTAAGTACAAGAGCTCGCTCGATGCATTCTCCCAAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E565292" ref_strand="+" ref_description="SGN-E565292 [3732]">
      <seq>gctactggaagtggtttgctggcaaccttgcctcagtggtgctgctggtgcttcttctttgttctttgtctactccttngactatgctcgtacccgtcttgctaatgacgccaagggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaagaagacacttaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttatactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttggacttggttggctcatcaccaatggtgctggtcttggcttcttacccaattgatacagtaagaagaagaatgatgatgacatctggtgaggcggttaagtacaagagctcgctcggatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaaggtgctggtgctaacatcctccgagctgttgcccggtgctggctgtgttggccggatatgacaagcttcaggttcttgttttgggaaagaaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48324" stop="49869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48624" g_stop="48931" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49569" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="590" r_length="282" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E565292" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E565292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48624" e_stop="48931"/>
          <exon e_start="49291" e_stop="49569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAA-GGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTT-GCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCT-TGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTG-CTGGTGCTGG-TGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATAC</genome_strand>
        <mrna_strand>GCTACTGGAAGTGGTTTGCTGGCAACCTTGCCTCA-GTGGTGCTGCTGGTGCTTCTTCTTTGTTCTTTGTCTACTCCTTNGACTATGCTCGTACCCGTCTTGCTAATGACGCCAAGGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAAGAAGACACTTAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTATACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGGACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGGCTTCTTACCCAATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTTAAGTACAAGAGCTCGCTCGGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAA-GGTGCTGGTGCTAACATCCTCCGAGCTGTTGCCCGGTGCTGGCTGTGTTGGCCGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311596" ref_strand="+" ref_description="SGN-E311596 [cLEZ-9-C1]">
      <seq>ggaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaggagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaagttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48359" stop="49899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48659" g_stop="48931" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49599" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="582" r_length="309" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E311596" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48659" e_stop="48931"/>
          <exon e_start="49291" e_stop="49599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTA</genome_strand>
        <mrna_strand>GGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAAGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297816" ref_strand="+" ref_description="SGN-E297816 [cLET-38-N15]">
      <seq>gaggtgctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggcgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgcacttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48360" stop="49836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48660" g_stop="48931" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49536" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="518" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E297816" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48660" e_stop="48931"/>
          <exon e_start="49291" e_stop="49536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGAC</genome_strand>
        <mrna_strand>GAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265032" ref_strand="+" ref_description="SGN-E265032 [cLEI-2-M3]">
      <seq>gctgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaaaaagaatgatgatgacatctggtgaggcggtgaagtacaggagctcgcttgatgcattctcccagattgttaagaatgatggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggggctggtgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48365" stop="49822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48665" g_stop="48931" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49522" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="499" r_length="232" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E265032" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48665" e_stop="48931"/>
          <exon e_start="49291" e_stop="49522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGT</genome_strand>
        <mrna_strand>GCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAAAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGATGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGGGCTGGTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276815" ref_strand="+" ref_description="SGN-E276815 [cLEN-14-I2]">
      <seq>tgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaggagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttggggagacatttatcatttttccttttgactttttttttgtaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48367" stop="50007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48667" g_stop="48931" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49707" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="681" r_length="416" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E276815" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48667" e_stop="48931"/>
          <exon e_start="49291" e_stop="49707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATA</genome_strand>
        <mrna_strand>TGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC-TTTTTTTTTGTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274681" ref_strand="+" ref_description="SGN-E274681 [cLEN-13-I2]">
      <seq>tgctggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagntcaatggtttggttgatgtttacnggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaggagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48367" stop="49937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48667" g_stop="48931" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49637" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="612" r_length="347" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E274681" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48667" e_stop="48931"/>
          <exon e_start="49291" e_stop="49637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTT</genome_strand>
        <mrna_strand>TGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGNTCAATGGTTTGGTTGATGTTTACNGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276809" ref_strand="+" ref_description="SGN-E276809 [cLEN-14-G2]">
      <seq>tgctggcgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgaggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaattacaggagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaagttcttgttttgggaaagaaatacagatctggtggtgcataagtcagcctcgtaacatgctttagaatttaaatggtgatgaaaatctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48367" stop="49936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48667" g_stop="48931" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49636" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="611" r_length="346" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E276809" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48667" e_stop="48931"/>
          <exon e_start="49291" e_stop="49636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTT</genome_strand>
        <mrna_strand>TGCTGGCGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGAGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAATTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAAGTTCTTGTTTTGGGAAAGAAATACAGATCTGGTGGTGCATAAGTCAGCCTCGTAACATGCTTTAGAATTTAAATGGTGATGAAAATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290544" ref_strand="+" ref_description="SGN-E290544 [cLES-20-K10]">
      <seq>tggtgcttcctctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaggagctcgcttgatgcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48370" stop="49734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48670" g_stop="48931" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49434" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="406" r_length="144" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E290544" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48670" e_stop="48931"/>
          <exon e_start="49291" e_stop="49434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTC</genome_strand>
        <mrna_strand>TGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576173" ref_strand="-" ref_description="SGN-E576173 [59349]">
      <seq>gtgcttcttctttgttctttgtctactccttggactatgctcgtacccgtcttgctaatgacgccaaggcttcaaaagaagggaggtgagaagccagttcaatgttctgttgatgtctacaacgaagacacttaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttatactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttggacttggttggctcatcaccaatggtgctggtcttgcttcttacccaattgatacagtaagaagaagaatgatgatgacatctggtgaggcggttaagtacaagagctcgctcgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgccggtgctggtgtgttggccggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggcggtgcctaagttggcctcgtaacatccttttagaattagatggtgatgaaaatctttttggtgttgcatttgagtattcagttggggagacaattatcatttttccttttgcctttttgtaataattcaaaatcttattagagtgggttaaagcttaaaaaccccacacttgtttcccttgttgaagggttatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48372" stop="50077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48672" g_stop="48931" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49777" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="745" r_length="483" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E576173" ref_strand="-">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576173" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48672" e_stop="48931"/>
          <exon e_start="49291" e_stop="49777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAA-GAAGGGAGGCGAG-AGGCAGTTCAATGGTTTGGTTGATGTCTAC-AGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCC-TTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAA-AATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTA</genome_strand>
        <mrna_strand>GTGCTTCTTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGACGCCAAGGCTTCAAAAGAAGGGAGGTGAGAAGCCAGTTCAAT-GTTCTGTTGATGTCTACAACGAAGACACTTAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTATACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGGACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCAATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTTAAGTACAAGAGCTCGCTCGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCCGGTGCTGGTGTGTTGGCCGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGCGGTGCCTAAGTTGGCCTCGTAACATCCTTTTAGAA-TTAGATGGTGATGAAAATCTTTTTGGTGTTGCATTTGAGTATTCAGTTGGGGAGACAATTATCATTTTTCCTTTTGCC-----TTTTTGTAATAATTCAAAATCTTATTAGAGTGGGTTAAAGCTTAAAAACCCCACACTTGTTTCCCTTGTTGAAGGGTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447849" ref_strand="+" ref_description="SGN-E447849 [cSTS-3-M19]">
      <seq>cttcttctttgttctttgtctacctccttggactatgctcgtacccgtcttgctaatgacgccaaggcttcaaagaaggggaggtgagaggcagttcaatggtttggttgatgtctaccaagaagacacttaaatctgatggaattgctggtctatacccgtgggattcaacatttcatgtgttggtatcattgtnacccgtggtttatacctttggaatgtaccgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttggccttggttggctcatcacccaatggtgctggtcttgcttcttacccaattgatacagtaagaagaagaatgatgatgacatctggtgaggcggttaagtacaagagctcgctcgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtggctggtgctaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48375" stop="49792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48675" g_stop="48931" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49492" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="468" r_length="204" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E447849" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48675" e_stop="48931"/>
          <exon e_start="49291" e_stop="49492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTCTTTGTTCTTTGTCTA-CTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAA-GGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTA-CAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATA-CCGT-GGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTA-CTTTGGAATGTA-CGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCA-CCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGT-GCTGGTGCTAACA</genome_strand>
        <mrna_strand>CTTCTTCTTTGTTCTTTGTCTACCTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGACGCCAAGGCTTCAAAGAAGGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACCAAGAAGACACTTAAATCTGATGGAATTGCTGGTCTATACCCGTGGGATTCAACATTTCATGTGTTGGTATCATTGTNACCCGTGGTTTATACCTTTGGAATGTACCGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGGCCTTGGTTGGCTCATCACCCAATGGTGCTGGTCTTGCTTCTTACCCAATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTTAAGTACAAGAGCTCGCTCGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGGCTGGTGCTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302659" ref_strand="+" ref_description="SGN-E302659 [cLEX-1-E20]">
      <seq>ttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaggagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcaacctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48401" stop="49965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48701" g_stop="48931" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49665" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="606" r_length="375" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E302659" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48701" e_stop="48931"/>
          <exon e_start="49291" e_stop="49665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGG</genome_strand>
        <mrna_strand>TTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAACCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284191" ref_strand="+" ref_description="SGN-E284191 [cLER-16-K17]">
      <seq>ttggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggcgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgcacttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48401" stop="49768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48701" g_stop="48931" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49468" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="409" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E284191" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48701" e_stop="48931"/>
          <exon e_start="49291" e_stop="49468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTC</genome_strand>
        <mrna_strand>TTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602979" ref_strand="-" ref_description="SGN-E602979 [56057]">
      <seq>ggactatgctcgtacccgtcttgctaatgacgccaaggcttcaaagaagggaggtgagagccagttcaatggtttggttgatgtctacaagaagacacttaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcatcgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttggacttggttggctcatcaccaatggtgctggtcttgcttcttacccaattgatacagtaagaagaagaatgatgatgacatctggtgaggcggttaagtacaagagttcgctcgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgccggtgcgggtgtgttggccggatatgacaagcttcaggttcttgttttgggaaagaaattcggatctggcggtgcctaagtcagcctcgtaacttccttttagaattagatggtgatgaaaatctttttggtgttacatttgagtattcagttggggagaccattatcatttttccttttgcctttttgtaataattcaaaatcttaagagtgggttaaagcttaaaaaccccacactcgtttcccttgttgaagggttattactgttttgtttgggcggaccttatttcaattgcagagcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48403" stop="50119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48703" g_stop="48931" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49819" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="752" r_length="523" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E602979" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E602979" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48703" e_stop="48931"/>
          <exon e_start="49291" e_stop="49819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCC-TTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTT-AGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTAC</genome_strand>
        <mrna_strand>GGACTATGCTCGTACCCGTCTTGCTAATGACGCCAAGGCTTCAAAGAAGGGAGGTGAGAGCCAGTTCAATGGTTTGGTTGATGTCTACAAGAAGACACTTAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATCGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGGACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCAATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTTAAGTACAAGAGTTCGCTCGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCCGGTGCGGGTGTGTTGGCCGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATTCGGATCTGGCGGTGCCTAAGTCAGCCTCGTAACTTCCTTTTAGAA-TTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACCATTATCATTTTTCCTTTTGCC-----TTTTTGTAATAATTC--AAAATCTTAAGAGTGGGTTAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556845" ref_strand="+" ref_description="SGN-E556845 [cTSD-4-M2]">
      <seq>ggactatgctcgtacccgtcttgctaatgatgccaaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcctaattcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttggtgttacatttgagtattcagttggggagacatttatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48403" stop="49979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48703" g_stop="48931" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49679" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="618" r_length="389" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E556845" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48703" e_stop="48931"/>
          <exon e_start="49291" e_stop="49679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATT</genome_strand>
        <mrna_strand>GGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAATTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240612" ref_strand="+" ref_description="SGN-E240612 [cLED-21-N21]">
      <seq>taatgatgccaaggcttcaaagaancnnnaacagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgcacttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48427" stop="49734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48727" g_stop="48931" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49434" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="349" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E240612" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48727" e_stop="48931"/>
          <exon e_start="49291" e_stop="49434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTC</genome_strand>
        <mrna_strand>TAATGATGCCAAGGCTTCAAAGAANCNNNAACAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694139" ref_strand="+" ref_description="SGN-E694139 [LH_Ea03C09](-)">
      <seq>caaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctccaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttcccccattgatccagtaagaagaagaatgatgatgacatttggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaaacttcaggtttttgttttgggaaagaaatacggatctggtggtgcataagtcaccctcgtaacatcctttagaatttagatggtgatgaaaatctttttggtgttacatttgagtattttgttggggagacaattatttatcatttttccttttgccttttttttttttgtaataattcgaaaaatcttagagtgggtcaaagcttaaaaaccccccattcgtttcccttgttgaagggttattactgttttgtttggggggcccttatttcaattgcagagcttacagattttaaaggaatcttttgataaaatcaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48436" stop="50151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48736" g_stop="48931" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49850" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="762" r_length="566" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="763" polyA_stop="784"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E694139" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48736" e_stop="48931"/>
          <exon e_start="49291" e_stop="49850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGAC-A--A-TTATCATTATTCCTTTTGCC--TTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAA</genome_strand>
        <mrna_strand>CAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTCCAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTCCCCCATTGATCCAGTAAGAAGAAGAATGATGATGACATTTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAACTTCAGGTTTTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCACCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTTTGTTGGGGAGACAATTATTTATCATTTTTCCTTTTGCCTTTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCCCATTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGGGGCCCTTATTTCAATTGCAGAGCTTACAGATTTTAAAGGAATCTTTTGATAAAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E696824" ref_strand="+" ref_description="SGN-E696824 [LH_Ea10C06](-)">
      <seq>caaggcttcaaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggtatgtatgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgcacttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaaacttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttggtgttacatttgagtattctgttggggagacaattattatcatttttccttttgcctttttttgtaataattcgaaatcttagagtgggtaaaagtttaaaaaccccacacttgtttcccttgttgaagggttttaaaggttttatttgagcggcccttatttcaattgccttttaagggaattctgaatgaatcttttgataaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48436" stop="50151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48736" g_stop="48931" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49845" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="749" r_length="553" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="750" polyA_stop="767"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E696824" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48736" e_stop="48931"/>
          <exon e_start="49291" e_stop="49845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGAC-A--ATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAA</genome_strand>
        <mrna_strand>CAAGGCTTCAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGTATGTATGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAACTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCTGTTGGGGAGACAATTATTATCATTTTTCCTTTTGCC---TTTTTTTGTAATAATTCG--AAATCTTAGAGTGGGTAAAAGTTTAAAAACCCCACACTTGTTTCCCTTGTTGAAGGGTTTTAAAGGTTTTATTTGAGCGGCCCTTATTTCAATTGCCTTTTAAGGGAATTCTGAATGAATCTTTTGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409854" ref_strand="+" ref_description="SGN-E409854 [PPI-15-C8]">
      <seq>caaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacacttaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgaggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttggacttggttggctcatcaccaatggtgctggtcttgcttcttacccaattgatacagtaagaagaagaatgatgatgacatctggtgaggcggttaagtacaagagctcgctcgatgcattctcccagattgtcaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgccggtgctggtgtgctggccggatatgacaagcttcaggttctggttttgggaaagaaatacggatctggcggtgcctaagtcagcctcgtaacatccttttagaatttagatggtgatgaaaatctttttggtgttacatttgagtattcagttggggagacnattaattatcatttttccttgtgcctttttgtaataattcaaaatcttaaagagtgggttaaagcttaaaaaccccaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48444" stop="50050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48744" g_stop="48931" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49752" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="650" r_length="462" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E409854" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48744" e_stop="48931"/>
          <exon e_start="49291" e_stop="49752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCC-TTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCT-TTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACT</genome_strand>
        <mrna_strand>CAAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTTAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGAGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGGACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCAATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTTAAGTACAAGAGCTCGCTCGATGCATTCTCCCAGATTGTCAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCCGGTGCTGGTGTGCTGGCCGGATATGACAAGCTTCAGGTTCTGGTTTTGGGAAAGAAATACGGATCTGGCGGTGCCTAAGTCAGCCTCGTAACATCCTTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACNATTA--ATTATCATTTTTCCTTGTGCCTTTTTGTAATAATTCAAAATCTTAAAGAGTGGGTTAAAGCTTAAAAACCCCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343366" ref_strand="+" ref_description="SGN-E343366 [cTOF-19-M17]">
      <seq>aaagaagggaggtgagaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaggagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttggggagacatttatcatttttccttttgactttttttttgtaataattcgaaaaatttagagtgggtcaaagtttaaaaacccacactcgtttcccttgttgaaggattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48445" stop="50074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48745" g_stop="48931" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49770" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="663" r_length="476" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="667" polyA_stop="676"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E343366" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48745" e_stop="48931"/>
          <exon e_start="49291" e_stop="49770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGG</genome_strand>
        <mrna_strand>AAAGAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAG-AATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC-TTTTTTTTTGTAATAATTCGAAAAAT-TTAGAGTGGGTCAAAGTTTAAAAA-CCCACACTCGTTTCCCTTGTTGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611486" ref_strand="-" ref_description="SGN-E611486 [61238]">
      <seq>aagaagggagtgagaagccagttcaatgctttgtctgatgtctacaggaagacacttaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttggacttggttggctcatcaccaatggtgctggtcttgcttcttacccaattgatacagtaagaagaagaatgatgatgacatctggtgaggcggttaagtacaagagctcactcgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgccggtgcgggtgtgttggccggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggcggtgcctaagtcagcctcgtaacatccttttagaattagatggtgatgaaaatctttttggtgttacatttgagtattcagttggggagacaattatcatttttccttttacctttttgtaataattcaaaatcttaagagtgggttaaagcttaaaaaccccacactcgtttcccttgttgaagggttattactgttttgtttgggcggaccttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48446" stop="50100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48746" g_stop="48931" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49808" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="698" r_length="512" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E611486" ref_strand="-">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E611486" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48746" e_stop="48931"/>
          <exon e_start="49291" e_stop="49808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCC-TTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTT-AGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATT</genome_strand>
        <mrna_strand>AAGAAGGGAGTGAGAAGCCAGTTCAATGCTTTGTCTGATGTCTACAGGAAGACACTTAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGGACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCAATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTTAAGTACAAGAGCTCACTCGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCCGGTGCGGGTGTGTTGGCCGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGCGGTGCCTAAGTCAGCCTCGTAACATCCTTTTAGAA-TTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTTTTCCTTTTACC-----TTTTTGTAATAATTC--AAAATCTTAAGAGTGGGTTAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486277" ref_strand="-" ref_description="SGN-E486277 [cSTE-21-N11]">
      <seq>gaagggaggtgagaggcagttcaatggtttggttgatgtctacaagaagacacttaaatctgatgggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttatactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttggacttggttggctcatcaccaatggtgctggtcttgcttcttacccaattgatacagtaagaagaagaatgatgatgacatctggtgaggcggttaagtacaagagctcgctcgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgccggtgctggtgtgttggccggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggcggtgcctaagttggcctcgtaacatccttttagaattagatggtgatgaaaatctttttggtgttgcatttgagtattcagttggggagacaattatcatttttccttttgcctttttgtaataattcaaaatcttattagagtgggttaaagcttaaaaaccccacacttgtttcccttgttgaagggttattactgttttgtttgggcggacctgatttcaattgccagagcttacagattctgaatgaaaaaaaaaaaaaaaaaactcagactaattctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48448" stop="50133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48748" g_stop="48931" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49832" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="724" r_length="539" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="725" polyA_stop="742"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E486277" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486277" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48748" e_stop="48931"/>
          <exon e_start="49291" e_stop="49832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGAT-GGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCC-TTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAA-AATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTG-CAGAGCTTACAGATTCTGAATGA</genome_strand>
        <mrna_strand>GAAGGGAGGTGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAAGAAGACACTTAAATCTGATGGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTATACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGGACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCAATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTTAAGTACAAGAGCTCGCTCGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCCGGTGCTGGTGTGTTGGCCGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGCGGTGCCTAAGTTGGCCTCGTAACATCCTTTTAGAA-TTAGATGGTGATGAAAATCTTTTTGGTGTTGCATTTGAGTATTCAGTTGGGGAGACAATTATCATTTTTCCTTTTGCC-----TTTTTGTAATAATTCAAAATCTTATTAGAGTGGGTTAAAGCTTAAAAACCCCACACTTGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTGATTTCAATTGCCAGAGCTTACAGATTCTGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309885" ref_strand="+" ref_description="SGN-E309885 [cLEZ-10-G11]">
      <seq>agaggcagttcaatggtttggttgatgtctacaggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggcgaagtacaggagctcgcttgatgcattctcccacattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaagttcttgttttggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48459" stop="49860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48759" g_stop="48931" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49560" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="443" r_length="270" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E309885" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48759" e_stop="48931"/>
          <exon e_start="49291" e_stop="49560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGA</genome_strand>
        <mrna_strand>AGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGCGAAGTACAGGAGCTCGCTTGATGCATTCTCCCACATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAAGTTCTTGTTTTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482282" ref_strand="-" ref_description="SGN-E482282 [cSTD-21-N11]">
      <seq>gaggcagttcaatggtttggttgatgtctacaagaagacacttaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttatactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttggacttggttggctcatcaccaatggtgctggtcttgcttcttacccaattgatacagtaagaagaagaatgatgatgacatctggtgaggcggttaagtacaagagctcgctcgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgccggtgctggtgtgttggccggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggcggtgcctaagttggcctcgtaacatccttttagaattagatggtgatgaaaatctttttggtgttgcatttgagtattcagttggggagacaattatcatttttccttttgcctttttgtaataattcaaaatcttattagagtgggttaaagcttaaaaaccccacacttgtttcccttgttgaagggttattactgttttgtttgggcggacctgatttcaattgccagagcttacagattttgaatgaaaaaaaaaaaaaaaaaactcagactaattctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48460" stop="50133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48760" g_stop="48931" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49832" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="711" r_length="539" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="712" polyA_stop="729"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E482282" ref_strand="-">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482282" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48760" e_stop="48931"/>
          <exon e_start="49291" e_stop="49832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCC-TTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAA-AATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTG-CAGAGCTTACAGATTCTGAATGA</genome_strand>
        <mrna_strand>GAGGCAGTTCAATGGTTTGGTTGATGTCTACAAGAAGACACTTAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTATACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGGACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCAATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTTAAGTACAAGAGCTCGCTCGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCCGGTGCTGGTGTGTTGGCCGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGCGGTGCCTAAGTTGGCCTCGTAACATCCTTTTAGAA-TTAGATGGTGATGAAAATCTTTTTGGTGTTGCATTTGAGTATTCAGTTGGGGAGACAATTATCATTTTTCCTTTTGCC-----TTTTTGTAATAATTCAAAATCTTATTAGAGTGGGTTAAAGCTTAAAAACCCCACACTTGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTGATTTCAATTGCCAGAGCTTACAGATTTTGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395027" ref_strand="+" ref_description="SGN-E395027 [TUS-40-H12](-)">
      <seq>caggaagacactcaaatctgatggaattgttggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaggagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttggggagacatttatcatttttccttttgactttttttttgtaataattcgaaaaatcttagagtgggtcaaagtttaaaaaccccacactcgtttcccttgttgaaggattattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaaatcttttgataaaatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48490" stop="50151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48790" g_stop="48931" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49850" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="702" r_length="560" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E395027" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48790" e_stop="48931"/>
          <exon e_start="49291" e_stop="49850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATG-AATCTTTTGATAAAATCAA</genome_strand>
        <mrna_strand>CAGGAAGACACTCAAATCTGATGGAATTGTTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC-TTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGTTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGATTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAAATCTTTTGATAAAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308974" ref_strand="+" ref_description="SGN-E308974 [cLEY-23-B17]">
      <seq>aggaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaggagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttggggagacatttatcatttttccttttgactttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48491" stop="49999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48791" g_stop="48931" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49699" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="550" r_length="409" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E308974" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48791" e_stop="48931"/>
          <exon e_start="49291" e_stop="49699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTT</genome_strand>
        <mrna_strand>AGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGACTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284357" ref_strand="+" ref_description="SGN-E284357 [cLER-16-G23]">
      <seq>gaagacactcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaggagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttaaatggtgatgaaaatctttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48493" stop="49938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48793" g_stop="48931" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49638" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="487" r_length="348" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E284357" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48793" e_stop="48931"/>
          <exon e_start="49291" e_stop="49638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTG</genome_strand>
        <mrna_strand>GAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAAATGGTGATGAAAATCTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598937" ref_strand="+" ref_description="SGN-E598937 [51913]">
      <seq>agacacttaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcatcgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttggacttggttggctcatcaccaatggtgctggtcttgcttcttacccaattgatacagtaagaagaagaatgatgatgacatctggtgaggcggttaagtacaagagttcgctcgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgccggtgcgggtgtgttggccggatatgacaagcttcaggttcttgttttgggaaagaaattcggatctggcggtgcctaagtcagcctcgtaacttccttttagaattagatggtgatgaaagtctttttggtgttacctttgagtaattcagttggggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48495" stop="49968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48795" g_stop="48931" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49668" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="516" r_length="379" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E598937" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E598937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48795" e_stop="48931"/>
          <exon e_start="49291" e_stop="49668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGT-ATTCAGTTGGGGAGA</genome_strand>
        <mrna_strand>AGACACTTAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATCGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGGACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCAATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTTAAGTACAAGAGTTCGCTCGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCCGGTGCGGGTGTGTTGGCCGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATTCGGATCTGGCGGTGCCTAAGTCAGCCTCGTAACTTCCTTTTAGAATTAGATGGTGATGAAAGTCTTTTTGGTGTTACCTTTGAGTAATTCAGTTGGGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216758" ref_strand="-" ref_description="SGN-E216758 [cLEL-1-J21](-)">
      <seq>ctcatttttgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaggagctcgcttgatgcattctgccagattgttaagaatgagggtcccaaatatgtgttaaagggtgctggtgctaacatccttcgagctgttgctggtgctggtgtgttggctggatatgacaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48500" stop="49840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48800" g_stop="48931" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49540" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="382" r_length="250" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E216758" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216758" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48800" e_stop="48931"/>
          <exon e_start="49291" e_stop="49540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGC</genome_strand>
        <mrna_strand>CTCATTTTTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTGCCAGATTGTTAAGAATGAGGGTCCCAAATATGTGTTAAAGGGTGCTGGTGCTAACATCCTTCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329347" ref_strand="+" ref_description="SGN-E329347 [cTOD-2-P14]">
      <seq>tcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaggagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaagttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttggggagacatttatcatttttccttttgacttttttttgtaataattcgaaaaatcttatagtgggtcaaagtttaaaaaccccacactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48501" stop="50054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48801" g_stop="48931" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49754" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="593" r_length="462" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E329347" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48801" e_stop="48931"/>
          <exon e_start="49291" e_stop="49754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCG</genome_strand>
        <mrna_strand>TCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAAGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC--TTTTTTTTGTAATAATTCGAAAAATCTTATAGTGGGTCAAAGTTTAAAAACCCCACACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357396" ref_strand="+" ref_description="SGN-E357396 [cTOS-23-P9]">
      <seq>tcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaggagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttggggagacatttatcatttttccttttgactttttttttgtaataattcgaaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48501" stop="50020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48801" g_stop="48931" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49720" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="559" r_length="428" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E357396" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48801" e_stop="48931"/>
          <exon e_start="49291" e_stop="49720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCT</genome_strand>
        <mrna_strand>TCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC-TTTTTTTTTGTAATAATTCG-AAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354075" ref_strand="+" ref_description="SGN-E354075 [cTOS-16-O6]">
      <seq>tcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaggagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48501" stop="49908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48801" g_stop="48931" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49608" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="449" r_length="318" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E354075" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48801" e_stop="48931"/>
          <exon e_start="49291" e_stop="49608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTT</genome_strand>
        <mrna_strand>TCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357829" ref_strand="+" ref_description="SGN-E357829 [cTOS-24-G2]">
      <seq>tcaaatctgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggggctgggcttgcttcttacccccttgataccgtaagaaaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48501" stop="49682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48801" g_stop="48931" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49382" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="223" r_length="92" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E357829" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>223</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48801" e_stop="48931"/>
          <exon e_start="49291" e_stop="49382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAAT</genome_strand>
        <mrna_strand>TCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGGGCTGGGCTTGCTTCTTACCCCCTTGATACCGTAAGAAAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372981" ref_strand="+" ref_description="SGN-E372981 [TUS-32-D19](-)">
      <seq>taagcccctgcatcgaatctctctctcaaaataggtgatggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgcacttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcctaagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttggtgttacatttgagtattcagttggggagacaattatcattattccttttgcctttttttttgtaataattcgaaaaatcttagagtgggtcaaagcttaaaaaccccacactcgtttcccttgttgaagggttattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaatcttttataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48498" stop="50151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48808" g_stop="48931" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="159" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49851" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="718" r_length="559" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E372981" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48808" e_stop="48931"/>
          <exon e_start="49291" e_stop="49851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAAA</genome_strand>
        <mrna_strand>TGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCC-TTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTT-ATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293996" ref_strand="+" ref_description="SGN-E293996 [cLET-13-B16]">
      <seq>ggaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaggagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttggggagacatttatcatttttccttttgacttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48512" stop="50000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48812" g_stop="48931" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49700" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="530" r_length="410" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E293996" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48812" e_stop="48931"/>
          <exon e_start="49291" e_stop="49700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTT</genome_strand>
        <mrna_strand>GGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGACTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556814" ref_strand="+" ref_description="SGN-E556814 [cTSD-4-K7]">
      <seq>gaattgctggtctataccgtggtattcacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcctaagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttggtgttacatttgagtattcagttggggagacatttatcatttttccttttgacttttttttcgtaataattcgaaaaatcttagagtgggtcaaagtttaaaaaccccacactcgtttcccttgttgaagggttattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaaatcttttgataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48513" stop="50144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48813" g_stop="48931" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49844" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="673" r_length="554" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E556814" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48813" e_stop="48931"/>
          <exon e_start="49291" e_stop="49844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATG-AATCTTTTGATAA</genome_strand>
        <mrna_strand>GAATTGCTGGTCTATACCGTGGTATTCACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC-TTTTTTTTCGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGTTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAAATCTTTTGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554910" ref_strand="+" ref_description="SGN-E554910 [cTSC-5-M6]">
      <seq>gaattgctggtctataccgtggattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcctaagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttggtgttacatttgagtattcagttggggagacatttatcatttttccttttgacttttttttcgtaataattcgaaaaatcttagagtgggtcaaagtttaaaaaccccacactcgtttcccttgttgaagggttattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaaatcttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48513" stop="50141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48813" g_stop="48931" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49841" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="670" r_length="551" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E554910" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48813" e_stop="48931"/>
          <exon e_start="49291" e_stop="49841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATG-AATCTTTTGA</genome_strand>
        <mrna_strand>GAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC-TTTTTTTTCGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGTTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAAATCTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417440" ref_strand="-" ref_description="SGN-E417440 [STM-25-M20]">
      <seq>gattcaacatttcatgtgttggtatcatcgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttggacttggttggctcatcaccaatggtgctggtcttgcttcttacccaattgatacagtaagaagaagaatgatgatgacatctggtgaggcggttaagtacaagagttcgctcgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgccggtgcgggtgtgttggccggatatgacaagcttcaggttcttgttttgggaaagaaattcggatctggcggtgcctaagtcagcctcgtaacttccttttagaattagatggtgatgaaaatctttttggtgttacatttgagtattcagttggggagaccattatcatttttccttttgcctttttgtaataattcaaaatcttaagagtgggttaaagcttaaaaaccccacactcgtttcccttgttgaagggttattactgttttgtttgggcggaccttatttcaattgcagagcttacagattcagaatgaatctattgataacaaaaaagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48534" stop="50150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48834" g_stop="48931" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49856" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="657" r_length="559" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E417440" ref_strand="-">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417440" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48834" e_stop="48931"/>
          <exon e_start="49291" e_stop="49856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCC-TTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTT-AGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAAATGCGG</genome_strand>
        <mrna_strand>GATTCAACATTTCATGTGTTGGTATCATCGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGGACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCAATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTTAAGTACAAGAGTTCGCTCGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCCGGTGCGGGTGTGTTGGCCGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATTCGGATCTGGCGGTGCCTAAGTCAGCCTCGTAACTTCCTTTTAGAA-TTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACCATTATCATTTTTCCTTTTGCC-----TTTTTGTAATAATTC--AAAATCTTAAGAGTGGGTTAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCAGAATGAATCTATTGATAACA-AAAAAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292181" ref_strand="-" ref_description="SGN-E292181 [cLET-1-O18]">
      <seq>gattcaacatttcatgtgttggtatcattgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcagaatagtttatttgctaactttgcacatggttggctcatcaccaatggtgctggtcttgcttcctaccccattgatacagtaagaagaagaatgataatgacatctggtgaggcggtcaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgatggtgctggtgtgttggatggatatgccaagcctcaggttcttgttttgggaaagaaatacggatctggtggtgcgtaagtcagcctcgtaacatcctttagaatttagatggtgatcaaaatctcatgggtgttacatttgagtattcacttggggagacaattatcattattccttctgcctttttttttgtaataattcgaaaaatcttagagtgggtcaaagcttaaaaaccccacactcgtttcccttgttgaagggttatcactgttttgtttgggcggaccttatttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48534" stop="50106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48834" g_stop="48931" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49813" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="620" r_length="522" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E292181" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292181" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48834" e_stop="48931"/>
          <exon e_start="49291" e_stop="49813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGA</genome_strand>
        <mrna_strand>GATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................AATAGTTTATTTGCTAACTTTGCACATGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCCTACCCCATTGATACAGTAAGAAGAAGAATGATAATGACATCTGGTGAGGCGGTCAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGATGGTGCTGGTGTGTTGGATGGATATGCCAAGCCTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCGTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATCAAAATCTCATGGGTGTTACATTTGAGTATTCACTTGGGGAGACAATTATCATTATTCCTTCTGCC-TTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATCACTGTTTTGTTTGGGCGGACCTTATTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371559" ref_strand="-" ref_description="SGN-E371559 [TUS-29-C2]">
      <seq>tcatgtgttggtatcattgtttaccgtggtttgtactgtggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctntgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaggagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttggggagacatttatcatttttccttttgacttttttttgtaataattcgaaaaatcttagagtgggtcaaagtttaaaaaccccacactcgtttcccttgttgaaggattattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaaatcttttgataaaatcaaatgcggatcagtttgggacttgtgttattttaagtgtggtatataatattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48545" stop="50200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48845" g_stop="48931" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49903" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="699" r_length="612" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E371559" ref_strand="-">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371559" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48845" e_stop="48931"/>
          <exon e_start="49291" e_stop="49903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATG-AATCTTTTGATAAAATCAAATGCGGATCAGTTTGGTACTTGTGTTATTTTAAGTGTGGTATACAATATTAAG</genome_strand>
        <mrna_strand>TCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTGTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTNTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC--TTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGTTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGATTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAAATCTTTTGATAAAATCAAATGCGGATCAGTTTGGGACTTGTGTTATTTTAAGTGTGGTATATAATATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484013" ref_strand="-" ref_description="SGN-E484013 [cSTE-11-D16]">
      <seq>atgtgttggtatcatcgtttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttggacttggttggctcatcaccaatggtgctggtcttgcttcttacccaattgatacagtaagaagaagaatgatgatgacatctggtgaggcggttaagtacaagagttcgctcgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgccggtgcgggtgtgttggccggatatgacaagcttcaggttcttgttttgggaaagaaattcggatctggcggtgcctaagtcagcctcgtaacttccttttagaattagatggtgatgaaaatctttttggtgttacatttgagtattcagttggggagaccattatcatttttccttttgcctttttgtaataattcaaaatcttaagagtgggttaaagcttaaaaaccccacactcgtttcccttgttgaagggttattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48547" stop="50133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48847" g_stop="48931" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49832" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="621" r_length="536" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E484013" ref_strand="-">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484013" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48847" e_stop="48931"/>
          <exon e_start="49291" e_stop="49832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCC-TTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTT-AGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGA</genome_strand>
        <mrna_strand>ATGTGTTGGTATCATCGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGGACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCAATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTTAAGTACAAGAGTTCGCTCGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCCGGTGCGGGTGTGTTGGCCGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATTCGGATCTGGCGGTGCCTAAGTCAGCCTCGTAACTTCCTTTTAGAA-TTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACCATTATCATTTTTCCTTTTGCC-----TTTTTGTAATAATTC--AAAATCTTAAGAGTGGGTTAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603056" ref_strand="-" ref_description="SGN-E603056 [56136]">
      <seq>ggtatcattgtttaccgtggtttatactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttggacttggttggctcatcaccaatggtgctggtcttgcttcttacccaattgatacagtaagaagaagaatgatgatgacatctggtgagncggttaagtacaagagctcgctcgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgccggtgctggtgtgttggccggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggcggtgcctaagttggcctcgtaacatccttttagaattagatggtgatgaaaatctttttggtgttgcatttgagtattcagttggggagacaattatcatttttccttttgcctttttgtaataattcaaaatcttattagagtgggttaaagcttaaaaaccccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48554" stop="50050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48854" g_stop="48931" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49748" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="532" r_length="454" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="533" polyA_stop="577"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E603056" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E603056" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48854" e_stop="48931"/>
          <exon e_start="49291" e_stop="49748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCC-TTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAA-AATCTTAGAGTGGGTCAAAGCTTAAAAACCCCA</genome_strand>
        <mrna_strand>GGTATCATTGTTTACCGTGGTTTATACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGGACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCAATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGNCGGTTAAGTACAAGAGCTCGCTCGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCCGGTGCTGGTGTGTTGGCCGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGCGGTGCCTAAGTTGGCCTCGTAACATCCTTTTAGAA-TTAGATGGTGATGAAAATCTTTTTGGTGTTGCATTTGAGTATTCAGTTGGGGAGACAATTATCATTTTTCCTTTTGCC-----TTTTTGTAATAATTCAAAATCTTATTAGAGTGGGTTAAAGCTTAAAAACCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281107" ref_strand="+" ref_description="SGN-E281107 [cLER-7-G2]">
      <seq>tttaccgtggtttgtactttggaatgtacgactccttgaagcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgctcttgggtggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48564" stop="49694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48864" g_stop="48931" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49394" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="172" r_length="104" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E281107" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>172</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48864" e_stop="48931"/>
          <exon e_start="49291" e_stop="49394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATC</genome_strand>
        <mrna_strand>TTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGGTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575208" ref_strand="-" ref_description="SGN-E575208 [34796]">
      <seq>tggaatgtacgactcccttgaagcctgtcctcttgacaggaaacctgcaggatagttttctttgctagctttggacttggttggctcatcaccaatggtgctggtcttgcttcttacccaattgatacagtaagaagaagaatgatgatgacatctggtgaggcggttaagtacaagagctcactcgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgccggtgcgggtgtgttggccggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggcggtgcctaagtcagcctcgtaacatccttttagaattagatggtgatgaaaatctttttggtgttacatttgagtattcagttggggagacaattatcatttttccttttacctttttgtaataattcaaaatcttaagagtgggttaaagcttaaaaaccccacactcgtttcccttgttgaagggttattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaatctattgataaaatcaaatgcggatcagtttgggactaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48583" stop="50170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48883" g_stop="48931" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49873" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="628" r_length="578" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E575208" ref_strand="-">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575208" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48883" e_stop="48931"/>
          <exon e_start="49291" e_stop="49873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATGTACGACT-CCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAG-TTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCC-TTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTT-AGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAAATGCGGATCAGTTTGGTACTTGT</genome_strand>
        <mrna_strand>TGGAATGTACGACTCCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTTCTTTGCTAGCTTTGGACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCAATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTTAAGTACAAGAGCTCACTCGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCCGGTGCGGGTGTGTTGGCCGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGCGGTGCCTAAGTCAGCCTCGTAACATCCTTTTAGAA-TTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTTTTCCTTTTACC-----TTTTTGTAATAATTC--AAAATCTTAAGAGTGGGTTAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTATTGATAAAATCAAATGCGGATCAGTTTGGGACTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353987" ref_strand="+" ref_description="SGN-E353987 [cLHT-6-K13](-)">
      <seq>gcctgtcctcttgacaggaaacctgcaggatagtttctttgctagctttgcactgggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtaccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttggtgttacatttgagtattcagttggggagacaattatcatttttcgttttgacttttttttgtaataattcgaaaaatcttagagtgggtcaaagcttaaaaaccccacactcgtttcccttgttgaagggttattactgttttgtttgggcgtaccttatttcaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48604" stop="50113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48904" g_stop="48931" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49813" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="549" r_length="521" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E353987" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48904" e_stop="48931"/>
          <exon e_start="49291" e_stop="49813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGA</genome_strand>
        <mrna_strand>GCCTGTCCTCTTGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCACTGGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTACCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTTTTCGTTTTGAC--TTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGTACCTTATTTCAAAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309887" ref_strand="+" ref_description="SGN-E309887 [cLEZ-10-I13]">
      <seq>tcttgacaggaaacctgcacgatagtttctttgctagctgtgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacatgagctcgcttgatgcattctcccagattgttaagaatgacggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggagctagtgtgttggctggatatgacaagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48612" stop="49842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48912" g_stop="48931" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49542" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="272" r_length="252" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E309887" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48912" e_stop="48931"/>
          <exon e_start="49291" e_stop="49542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTT</genome_strand>
        <mrna_strand>TCTTGACAGGAAACCTGCAC.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTGTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACATGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGACGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGAGCTAGTGTGTTGGCTGGATATGACAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268431" ref_strand="-" ref_description="SGN-E268431 [cLEI-13-B22]">
      <seq>tgacaggaaacctgcaggatagtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaggagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttggggagacatttatcatttttccttttgactttttttttgtaataattcgaaaaatcttagagtgggtcaaagtttaaaaaccccacactcgtttcccttgttgaaggattattactgttttgtttgggcgccccttatttcaattgcagagcttacagattctgaatgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48615" stop="50133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48915" g_stop="48931" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49291" g_stop="49846" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="572" r_length="555" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E268431" ref_strand="-">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268431" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48915" e_stop="48931"/>
          <exon e_start="49291" e_stop="49846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCATTTTGTTGGCTGTATAAATGCATCATTGTTTTCGTGTTGGAGAAGCCGATGTTTAGAGCTTGCTGTGGGAGAGTGATAAGAATTCAGTATTTGTCATTAAATATTGTCAATTTCTGCTAATTTTTCATCTTCCTTGATTTGTTTGCTAGAAAATAGATAATTGTAATTGATTTTCTCCTGGGAAGTTAATATGGATATGGATAAATAAATGTTTTAGTATAAAAAAACTATAGTGTCTGACCCTTGTTATGGTGCTGTATACAGGATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAA</genome_strand>
        <mrna_strand>TGACAGGAAACCTGCAG.......................................................................................................................................................................................................................................................................................................................................................................GATAGTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC-TTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGTTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGATTATTACTGTTTTGTTTGGGCGCCCCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226811" ref_strand="+" ref_description="SGN-E226811 [cLEL-26-E6](-)">
      <seq>gtttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaggagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttggggagacatttatcatttttccttttgactttttttttgtaataattcgaaaaatcttagagtgggtcaaagtttaaaaaccccacactcgtttcccttgttgaaggattattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48995" stop="50133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49295" g_stop="49828" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="534" polyA_stop="553"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E226811" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49295" e_stop="49828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGA</genome_strand>
        <mrna_strand>GTTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC-TTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGTTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGATTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351354" ref_strand="+" ref_description="SGN-E351354 [cTOS-12-O19]">
      <seq>tttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaggagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttggggagacatttatcatttttccttttgactttttttttgtaataattcgaaaaatcttagagtgggtcaaagtttaaaaaccccacactcgtttcccttgttgaaggattattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48996" stop="50130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49296" g_stop="49830" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E351354" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49296" e_stop="49830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAAT</genome_strand>
        <mrna_strand>TTTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC-TTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGTTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGATTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295703" ref_strand="+" ref_description="SGN-E295703 [cLET-25-J8]">
      <seq>ttctttgctagctttgcacttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcctaagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttggtgttacatttgagtattcagttggggagacaattatcattattccttttgcctttttttttgtaataattcgaaaaatcttagagtgggtcaaagcttaaaaaccccacactcgtttcccttgttgaagggttattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaatcttttgataaaatcaaatgcggatcagtttggtacttgtgttaananaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48997" stop="50177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49297" g_stop="49876" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E295703" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49297" e_stop="49876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAAATGCGGATCAGTTTGGTACTTGTGTT</genome_strand>
        <mrna_strand>TTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCC-TTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAAATGCGGATCAGTTTGGTACTTGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353473" ref_strand="+" ref_description="SGN-E353473 [cTOS-15-K13]">
      <seq>ttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaggagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttggggagacatttatcatttttccttttgactttttttttgtaataattcgaaaaatcttagagtgggtcaaagtttaaaaaccccacactcgtttcccttgttgaaggattattactgttttgtttgggcggaccttatttcaattgcagagcttacagattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48997" stop="50133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49297" g_stop="49835" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E353473" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49297" e_stop="49835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATC</genome_strand>
        <mrna_strand>TTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC-TTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGTTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGATTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353534" ref_strand="+" ref_description="SGN-E353534 [cTOS-15-B3]">
      <seq>ttctttgctagctttgctcttggttggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaggagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttggggagacatttatcatttttccttttgactttttttttgtaataattcgaaaaatcttagagtgggtcaaagtttaaaaaccccacactcgtttcccttgttgaaggattattactgttttgtttgggcggaccttatttcaattgcagagcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="48997" stop="50119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49297" g_stop="49819" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E353534" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49297" e_stop="49819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTAC</genome_strand>
        <mrna_strand>TTCTTTGCTAGCTTTGCTCTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC-TTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGTTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGATTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E594383" ref_strand="-" ref_description="SGN-E594383 [37633]">
      <seq>cttggttggctcatcaccaatggtgctggtcttgcttcttacccaattgatacagtaagaagaagaatgatgatgacatctggtgaggcggttaagtacaagagctcactcgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgccggtgcgggtgtgttggccggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggcggtgcctaagtcagcctcgtaacatccttttagaattagatggtgatgaaaatctttttggtgttacatttgagtattcagttggggagacaattatcatttttccttttacctttttgtaataattcaaaatcttaagagtgggttaaagcttaaaaaccccacactcgtttcccttgttgaagggttattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaatctattgataaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49015" stop="50151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49315" g_stop="49845" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="526" polyA_stop="542"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E594383" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E594383" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49315" e_stop="49845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCC-TTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTT-AGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAA</genome_strand>
        <mrna_strand>CTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCAATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTTAAGTACAAGAGCTCACTCGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCCGGTGCGGGTGTGTTGGCCGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGCGGTGCCTAAGTCAGCCTCGTAACATCCTTTTAGAA-TTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTTTTCCTTTTACC-----TTTTTGTAATAATTC--AAAATCTTAAGAGTGGGTTAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTATTGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E594515" ref_strand="-" ref_description="SGN-E594515 [37769]">
      <seq>cttggttggctcatcaccaatggtgctggtcttgcttcttacccaattgatacagtaagaagaagaatgatgatgacatctggtgaggcggttaagtacaagagctcactcgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgccggtgcgggtgtgttggccggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggcggtgcctaagtcagcctcgtaacatccttttagaattagatggtgatgaaaatctttttggtgttacatttgagtattcagttggggagacaattatcatttttccttttacctttttgtaataattcaaaatcttaagagtgggttaaagcttaaaaaccccacactcgtttcccttgttgaagggttattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaatctattgataaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49015" stop="50151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49315" g_stop="49845" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="526" polyA_stop="540"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E594515" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E594515" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49315" e_stop="49845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCC-TTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTT-AGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAA</genome_strand>
        <mrna_strand>CTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCAATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTTAAGTACAAGAGCTCACTCGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCCGGTGCGGGTGTGTTGGCCGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGCGGTGCCTAAGTCAGCCTCGTAACATCCTTTTAGAA-TTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTTTTCCTTTTACC-----TTTTTGTAATAATTC--AAAATCTTAAGAGTGGGTTAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTATTGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615209" ref_strand="+" ref_description="SGN-E615209 [65005]">
      <seq>cttggttggctcatcaccaatggtgctggtcttgcttcttacccaattgatacagtaagaagaagaatgatgatgacatctggtgaggcggttaagtacaagagctcgctcgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgccggtgctggtgtgttggccggatatgacaagcttcaggttcttgtttcgggaaagaaatacggatctggcggtgcctaagttggcctcgtaacatccttttagaattagatggtgatgaaaatctttgaggtgttgcatttgagtattcagttggggagacaattatcatttttccttttgcctttttgtaataattcaaaatcttattagagtgggttaaagcttaaaaaccccacacttgtctcccttgttgaagggttattactgactcgcatgggcggacctgatttcaattgccagagcttacagatactgaatgaatcttatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49015" stop="50142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49315" g_stop="49843" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E615209" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E615209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49315" e_stop="49843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCC-TTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAA-AATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTG-CAGAGCTTACAGATTCTGAATGAATCTTTTGATA</genome_strand>
        <mrna_strand>CTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCAATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTTAAGTACAAGAGCTCGCTCGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCCGGTGCTGGTGTGTTGGCCGGATATGACAAGCTTCAGGTTCTTGTTTCGGGAAAGAAATACGGATCTGGCGGTGCCTAAGTTGGCCTCGTAACATCCTTTTAGAA-TTAGATGGTGATGAAAATCTTTGAGGTGTTGCATTTGAGTATTCAGTTGGGGAGACAATTATCATTTTTCCTTTTGCC-----TTTTTGTAATAATTCAAAATCTTATTAGAGTGGGTTAAAGCTTAAAAACCCCACACTTGTCTCCCTTGTTGAAGGGTTATTACTGACTCGCATGGGCGGACCTGATTTCAATTGCCAGAGCTTACAGATACTGAATGAATCTTATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E695506" ref_strand="+" ref_description="SGN-E695506 [LH_Ea06L08](-)">
      <seq>ggctcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaaacttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttggtgttacatttgagtattctgttggggagacaattattatcatttttccttttgcctttttttgtaataattcgaaatcttagagtgggtaaaagtttaaaaaccccacacttgtttcccttgttgaagggttattactgttttattttagcaggggttatttcaattgcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49022" stop="50094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49322" g_stop="49813" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E695506" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49322" e_stop="49813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGAC-A--ATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGA</genome_strand>
        <mrna_strand>GGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAACTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCTGTTGGGGAGACAATTATTATCATTTTTCCTTTTGCC---TTTTTTTGTAATAATTCG--AAATCTTAGAGTGGGTAAAAGTTTAAAAACCCCACACTTGTTTCCCTTGTTGAAGGGTTATTACTGTTTTATTTTAGCAGGGGTTATTTCAATTGCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353954" ref_strand="+" ref_description="SGN-E353954 [cLHT-6-C23](-)">
      <seq>gctcatcaccaatggtgcgggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtaaagtacaagagctcgcttgatgcattctcccagattgttaaaaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaaacttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttggtgttacatttgagtattctgttggggagacaattattatcatttttccttttgcctttttttgtaataattcgaaatcttagagtgggtcaaagtttaaaaaccccacacttgtttcccttgttgaagggttatcactgttttgtttgggcggaaaatatttcaattgcagagcttacagattctgaatgaatcttttgataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49023" stop="50151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49323" g_stop="49851" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E353954" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49323" e_stop="49851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGAC-A--ATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAAA</genome_strand>
        <mrna_strand>GCTCATCACCAATGGTGCGGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTAAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAAAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAACTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCTGTTGGGGAGACAATTATTATCATTTTTCCTTTTGCC---TTTTTTTGTAATAATTCG--AAATCTTAGAGTGGGTCAAAGTTTAAAAACCCCACACTTGTTTCCCTTGTTGAAGGGTTATCACTGTTTTGTTTGGGCGGAAAATATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222666" ref_strand="+" ref_description="SGN-E222666 [cLEL-16-A19](-)">
      <seq>ctcatcaccaatggtgctggtcttgcttcttaccccattgattcagtaagaagaagaatgatgatgacatctggtgagccggtgaagtacaggagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttggggagacatttatcatttttccttttgactttttttttgtaataattcgaaaaatcttagagtgggtcaaagtttaaaacccccacactcgtttccctcccccaaggattattactgttttgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49024" stop="82712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49324" g_stop="49784" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49785" i_stop="51396" i_length="1612">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.676" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51397" g_stop="51418" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="481" r_length="21" r_score="0.636"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E222666" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49324" e_stop="49784"/>
          <exon e_start="51397" e_stop="51418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAAATGCGGATCAGTTTGGTACTTGTGTTATTTTAAGTGTGGTATACAATATTAAGCATGCGTACATTTTCTTTTTTTATTCAACTTGACACATTTTATTTTGTTGTGGCATAAGTTTCTTAAAAAATTAAATAGAAGGATGAAACTTGCAATATTTTGGATAGCGTAAGCATTTTTTTTTTCACATATATAATAAAGGATGTTCTTTAGGTTTAAGTCATACTTAAGATATGATTTTAGTCAAAAACTCCACAACCCATATATGATTATTTTCTAAGAAAATAATTTAGAATTTTTTCACTTATATAATAAAGGATGTACTTTAGGTTTAAGTCATATTTCAGATATGATCTTAGCTAAAAACTCCACAACCCATATACAATTTTTTTCAAAGAAAAAAATTTAGAAACAACATAAACATCGTCTAATTCACAGTTTCTAAATAGGAATAACCATAAAACACAAAAAAAATCTGAATTTTGTTCACTACAGTAAAGTAGCATTTTCTAATGAAAAATCACTCTTGGTAGTATTTCTTATTGAACTAGTGAAGATGTCATGAATATTTTTCTGATAAATATAAAGAAAATTATTATAGATAAATAAAGCGAATGTGCATAAATTAGTGCCTACATATGGTTTAAAACATTTGTTACTGTCAAAAGGTAATGAGATTTTACAATCCAAGTAGTAAGCATGAAAGGAGAGTTTAAAAATAGGGAAAAGAGTCAAATATACTCCTCAACTATTCAAAAAGGTCTAGATATACCCTCCGTTTGAAGTTTGGTTCACTGATGCTTTCGCCATCCAACTTTTGGTCCAAATATGCTCTTATGGACGTTAGTTGTCATGTTGGACATATCCAACTCATTTTTTATTTCTTTAAATGCCACATAGAATTGTCATGTCATTTTGGCCTTATCACATAATATTTATATGAAAATGAAAAGATATTCGGACTCATAAACTTAATCCGACCCATAAATCAACCCCTTTTAAATAAATTATTCGACCAATTTTCAATAATTTTGTTTTATTTTTTTCGATAAATTCCGAAAATGAGTAATTGATTAATAAAAAAATAGAAAAATATGAAAAAAGTATAAAATCAACGCCAAAAATTCATAAATAATTATAGTAACCTTAAATTCAGTATAAACACTTTTTTTTTGAATTCTTTTATTTTTTCAATAAATTCCGAAATGAGTAATTGATTAATAAAAAGTATGAAAAAAATATAAAATTAACGCCAAAAATTAAAAAATAAATACAGTAACCTTAAATTCAACAATTTCAACATTTTTTTAATTTTTCATTTTTTTGACAAATCCCAAAAATGAGTTTATTAACAAAAAATATGAAAAAATATAAAAATTACGCAAAAAATTTAGAAATAAAAAATAGGAAAATATGAAAAAAATATAAAATAAAAAAAATTGTTGAAATTATTGAATTTAAGTTTACTTTATTTATTTGTGAATTTTGATGTATATTTTTTTATTTTGTTTTCATATTTTTCCCTTTTTATTAAAAAATTAATCATTTTCAGGATTTGCCGAAAAATATAAAAA</genome_strand>
        <mrna_strand>CTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATTCAGTAAGAAGAAGAATGATGATGACATCTGGTGAGCCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC-TTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGTTTAAAACCCCCACACTCGTTTCCCTCCCCCAAGGATTATTACTGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353930" ref_strand="+" ref_description="SGN-E353930 [cTOS-10-F4]">
      <seq>tcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcctaagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttggtgttacatttgagtattcagttggggagacaattatcattattccttttgcctttttttttgtaataattcgaaaaatcttagagtgggtcaaagcttaaaaaccccacactcgtttcccttgttgaangggtattactgttttgtttgggcggaccttatttncattgcagagcttacagattctgaatgaatcttttgataaaatcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49025" stop="50151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49325" g_stop="49850" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="526" polyA_stop="535"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E353930" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49325" e_stop="49850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAA</genome_strand>
        <mrna_strand>TCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCC-TTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAANGGGTATTACTGTTTTGTTTGGGCGGACCTTATTTNCATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356919" ref_strand="+" ref_description="SGN-E356919 [cTOS-22-J11]">
      <seq>tcatcaccaatggtgctggtcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcctaagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttggtgttacatttgagtattcagttggggagacaattatcattattccttttgcctttttttttgtaataattcgaaaaatcttagagtgggtcaaagcttaaaaaccccacactcgtttcccttgttgaagggttattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaatcttttgataaaatcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49025" stop="50151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49325" g_stop="49850" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="526" polyA_stop="536"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E356919" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49325" e_stop="49850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAA</genome_strand>
        <mrna_strand>TCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCC-TTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226676" ref_strand="+" ref_description="SGN-E226676 [cLEL-26-E8](-)">
      <seq>tcttgcttcttaccccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaggagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttggggagacatttatcatttttccttttgactttttttttgtaataattcgaaaaatcttagagtgggtcaaagtttaaaaaccccacactcgtttcccttgttgaaggattattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49044" stop="50133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49344" g_stop="49832" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="489" polyA_stop="504"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E226676" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49344" e_stop="49832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGA</genome_strand>
        <mrna_strand>TCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC-TTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGTTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGATTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216112" ref_strand="+" ref_description="SGN-E216112 [cLEL-13-G18](-)">
      <seq>tgcttcttaccccattgatacagtaaaaaaaagaatgatgatgacatctggtgaggcggtgaagtacaggagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttggggagacatttatcatttttccttttgactttttttttgtaataattcgaaaaatcttagagtgggtcaaagtttaaaaaccccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49047" stop="50050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49347" g_stop="49748" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="402" polyA_stop="419"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E216112" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49347" e_stop="49748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCA</genome_strand>
        <mrna_strand>TGCTTCTTACCCCATTGATACAGTAAAAAAAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC-TTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGTTTAAAAACCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267987" ref_strand="+" ref_description="SGN-E267987 [cLEI-15-O1]">
      <seq>tttttttttttttttcattcagaatctgtaagctctgcaattgaaataaggtccgcccaaacaaaacagtaataatccttcaacaagggaaacgagtgtggggtttttaaactttgacccactctaagatttttcgaattattacaaaaaaaaagtcaaaaggaaaaatgataaatgtctccccaactgaatactcaaatgtaacaacaaaaagattttcatcaccatctaaattctaaaggatgttacgaggctgacttatgcaccaccagatccgtatttctttcccaaaacaagaacctgaagcttgtcatatccagccaacacaccagcaccagcaacagctcggaggatgttagcaccagcacccttgaacagagatttgggaccctcattcttaacaatctgggagaatgcatcaagcgagctcctgtacttcaccgcctcaccagatgtcatcatcattcttcttcttactgtatcaatggggtaagaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="-" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="50133" stop="49048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49846" g_stop="49348" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="-" ref_id="SGN-E267987" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49846" e_stop="49348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATCAAAAGATTCATTCAGAATCTGTAAGCTCTGCAATTGAAATAAGGTCCGCCCAAACAAAACAGTAATAACCCTTCAACAAGGGAAACGAGTGTGGGGTTTTTAAGCTTTGACCCACTCTAAGATTTTTCGAATTATTACAAAAAAAAAAGGCAAAAGGAATAATGATAATTGTCTCCCCAACTGAATACTCAAATGTAACACCAAAAAGATTTTCATCACCATCTAAATTCTAAAGGATGTTACGAGGCTGACTTAGGCACCACCAGATCCGTATTTCTTTCCCAAAACAAGAACCTGAAGCTTGTCATATCCAGCCAACACACCAGCACCAGCAACAGCTCGGAGGATGTTAGCACCAGCACCCTTGAACAGAGATTTGGGACCCTCATTCTTAACAATCTGGGAGAATGCATCAAGCGAGCTCTTGTACTTCACCGCCTCACCAGATGTCATCATCATTCTTCTTCTTACTGTATCAATGGGGTAAGAAGC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTCATTCAGAATCTGTAAGCTCTGCAATTGAAATAAGGTCCGCCCAAACAAAACAGTAATAATCCTTCAACAAGGGAAACGAGTGTGGGGTTTTTAAACTTTGACCCACTCTAAGATTTTTCGAATTATTAC-AAAAAAAAAGTCAAAAGGAAAAATGATAAATGTCTCCCCAACTGAATACTCAAATGTAACAACAAAAAGATTTTCATCACCATCTAAATTCTAAAGGATGTTACGAGGCTGACTTATGCACCACCAGATCCGTATTTCTTTCCCAAAACAAGAACCTGAAGCTTGTCATATCCAGCCAACACACCAGCACCAGCAACAGCTCGGAGGATGTTAGCACCAGCACCCTTGAACAGAGATTTGGGACCCTCATTCTTAACAATCTGGGAGAATGCATCAAGCGAGCTCCTGTACTTCACCGCCTCACCAGATGTCATCATCATTCTTCTTCTTACTGTATCAATGGGGTAAGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417835" ref_strand="+" ref_description="SGN-E417835 [STM-26-O23]">
      <seq>cacttttaattgagtttatcatagattcattcacaatctgtaagctctgcaattgaaataaggtccgcccaaacaaaacagtaataatccttcaacaagggaaacgagtgtggggtttttaagctttaacccactcttaagattttgaattattacaaaaaggtaaaaggaaaaatgataattgtctccccaactgaatactcaaatgtaacaccaaaaagattttcatcaccatctaattctaaaaggatgttacgaggctgacttaggcaccgccagatccgtatttctttcccaaaacaagaacctgaagcttgtcatatccggccaacacacccgcaccggcaacagctcggaggatgttagcaccagcacccttgaacagagatttgggaccctcattcttaacaatctgggagaatgcatcgagtgagctcttgtacttaaccgcctcaccagatgtcatcatcattcttcttcttactgtatcaattgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="-" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="50152" stop="49053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49859" g_stop="49354" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="-" ref_id="SGN-E417835" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49859" e_stop="49354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCGCATTTGATTTTATCAAAAGATTCATTCAGAATCTGTAAGCTCTGCAATTGAAATAAGGTCCGCCCAAACAAAACAGTAATAACCCTTCAACAAGGGAAACGAGTGTGGGGTTTTTAAGCTTTGACCCACTC-TAAGATTTTTCGAATTATTACAAAAAAAAAAGGCAAAAGGAATAATGATAATTGTCTCCCCAACTGAATACTCAAATGTAACACCAAAAAGATTTTCATCACCATCTAAATTCT-AAAGGATGTTACGAGGCTGACTTAGGCACCACCAGATCCGTATTTCTTTCCCAAAACAAGAACCTGAAGCTTGTCATATCCAGCCAACACACCAGCACCAGCAACAGCTCGGAGGATGTTAGCACCAGCACCCTTGAACAGAGATTTGGGACCCTCATTCTTAACAATCTGGGAGAATGCATCAAGCGAGCTCTTGTACTTCACCGCCTCACCAGATGTCATCATCATTCTTCTTCTTACTGTATCAATGGGGTA</genome_strand>
        <mrna_strand>CACTTTTAATTGAGTTTATCA-TAGATTCATTCACAATCTGTAAGCTCTGCAATTGAAATAAGGTCCGCCCAAACAAAACAGTAATAATCCTTCAACAAGGGAAACGAGTGTGGGGTTTTTAAGCTTTAACCCACTCTTAAGA-TTTT-GAATTATTAC-----AAAAAGGTAAAAGGAAAAATGATAATTGTCTCCCCAACTGAATACTCAAATGTAACACCAAAAAGATTTTCATCACCATCT-AATTCTAAAAGGATGTTACGAGGCTGACTTAGGCACCGCCAGATCCGTATTTCTTTCCCAAAACAAGAACCTGAAGCTTGTCATATCCGGCCAACACACCCGCACCGGCAACAGCTCGGAGGATGTTAGCACCAGCACCCTTGAACAGAGATTTGGGACCCTCATTCTTAACAATCTGGGAGAATGCATCGAGTGAGCTCTTGTACTTAACCGCCTCACCAGATGTCATCATCATTCTTCTTCTTACTGTATCAATTGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366318" ref_strand="+" ref_description="SGN-E366318 [cLPT-1-C9](-)">
      <seq>cccattgatacagtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcgttctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttggtgttacatttgagtattcagttggggagacgattatttatcatttttccttttgccttttttttgtaataattcgaaaaatcttagagtgggtcaaagcttaaaaaccccacactcgtttcccttgttgaagggttattactgttttgtttgggcagaccttatttcaattgcagagcttacagattctgaatgaatcttttgataaaatcaaatacgggatcagtttggtacttgtgttattttaagtgtggtatacaatattaagcatgcgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49057" stop="50213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49357" g_stop="49908" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="558" polyA_stop="569"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E366318" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49357" e_stop="49908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGAC-A--A-TTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAAATGC-GGATCAGTTTGGTACTTGTGTTATTTTAAGTGTGGTATACAATATTAAGCATGC</genome_strand>
        <mrna_strand>CCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCGTTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACGATTATTTATCATTTTTCCTTTTGCC--TTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCAGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAAATACGGGATCAGTTTGGTACTTGTGTTATTTTAAGTGTGGTATACAATATTAAGCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460333" ref_strand="+" ref_description="SGN-E460333 [cPRO-30-P11]">
      <seq>atacagtaagaagaagaatgatgatgacatctggtgaggcggttaagtacaagagctcgctcgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgccggtgctggtgtgttggccggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggcggtgcctaagttggcctcgtaacatccttttagaattagatggtgatgaaaatctttttggtgttgcatttgagtattcagttggggagacaattatcatttttccttttgcctttttgtaataattcaaaatcttattagagtgggttaaagcttaaaaaccccacacttgtttcccttgttgaagggttattactgttttgtttgggcggacctgatttcaattgccagagcttacagattctgaatgaatcttatgataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49064" stop="50151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49364" g_stop="49852" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E460333" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49364" e_stop="49852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCC-TTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAA-AATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTG-CAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAAAT</genome_strand>
        <mrna_strand>ATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTTAAGTACAAGAGCTCGCTCGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCCGGTGCTGGTGTGTTGGCCGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGCGGTGCCTAAGTTGGCCTCGTAACATCCTTTTAGAA-TTAGATGGTGATGAAAATCTTTTTGGTGTTGCATTTGAGTATTCAGTTGGGGAGACAATTATCATTTTTCCTTTTGCC-----TTTTTGTAATAATTCAAAATCTTATTAGAGTGGGTTAAAGCTTAAAAACCCCACACTTGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTGATTTCAATTGCCAGAGCTTACAGATTCTGAATGAATCTTATGATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452284" ref_strand="-" ref_description="SGN-E452284 [cSTS-16-E8]">
      <seq>agtaagaagaagaatgatgatgacatctggtgaggcggttaagtacaagagctcgctcgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgccggtgctggtgtgttggccggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggcggtgcctaagttggcctcgtaacatccttttagaattagatggtgatgaaaatctttttggtgttgcatttgagtattcagttggggagacaattatcatttttccttttgcctttttgtaataattcaaaatcttattagagtgggttaaagcttaaaaaccccacacttgtttcccttgttgaagggttattactgttttgtttgggcggacctgatttcaattgccagagcttacagattctgaatgaatcttatgataaaatcaaatgcggattagtttgggactaatgttgtttaaagtgtggtatacaatattttgcccttgcaaaaaaaaaaaaaaaaaactcgagactagttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49068" stop="50204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49368" g_stop="49904" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="541" polyA_stop="559"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E452284" ref_strand="-">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452284" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49368" e_stop="49904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCC-TTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAAT-CTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTG-CAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAAATGCGGATCAGTTTGGTACTTGTGTTATTTTAAGTGTGGTATACAATATTAAGC</genome_strand>
        <mrna_strand>AGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTTAAGTACAAGAGCTCGCTCGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCCGGTGCTGGTGTGTTGGCCGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGCGGTGCCTAAGTTGGCCTCGTAACATCCTTTTAGAA-TTAGATGGTGATGAAAATCTTTTTGGTGTTGCATTTGAGTATTCAGTTGGGGAGACAATTATCATTTTTCCTTTTGCC-----TTTTTGTAATAATTCAAAATCTTATTAGAGTGGGTTAAAGCTTAAAAACCCCACACTTGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTGATTTCAATTGCCAGAGCTTACAGATTCTGAATGAATCTTATGATAAAATCAAATGCGGATTAGTTTGGGACTAATGTTGTTTAAAGTGTGGTATACAATATTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715426" ref_strand="+" ref_description="SGN-E715426 [FB14BA04]">
      <seq>gtaagaagaagaatgatgatgacatctggtgaggcggtgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcctaagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttggtgttacatttgagtattcagttggggagacaattatcattattccttttgcctttttttttgtaataattcgaaaaatcttagagtgggtcaaagcttaaaaaccccacactcgtttcccttgttgaagggttattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaatcttttgataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49069" stop="50151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49369" g_stop="49857" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E715426" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49369" e_stop="49857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAAATGCGGA</genome_strand>
        <mrna_strand>GTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCC-TTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E219533" ref_strand="+" ref_description="SGN-E219533 [cLEL-11-D17](-)">
      <seq>gaagaagaatgatgatgacatctggtgaggcggtgaagtacaggagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttggggagacatttatcatttttccttttgactttttttttgtaataattcgaaaaatcttagagtgggtcaaagtttaaaaaccccacactcgtttcccttgttgaaggattattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaaatcttttgataaaatcaaattcggatcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49073" stop="50160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49373" g_stop="49860" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="489" polyA_stop="507"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E219533" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49373" e_stop="49860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATG-AATCTTTTGATAAAATCAAATGCGGATCA</genome_strand>
        <mrna_strand>GAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC-TTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGTTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGATTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAAATCTTTTGATAAAATCAAATTCGGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354194" ref_strand="+" ref_description="SGN-E354194 [cTOS-16-K21]">
      <seq>tgaggcggtgaagtacaggagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttggggagacatttatcatttttccttttgactttttttttgtaataattcgaaaaatcttagagtgggtcaaagtttaaaaaccccacactcgtttcccttgttgaaggattattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaaatcttttgataaaatcaaatgcggatcagtttgggacttgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49098" stop="50175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49398" g_stop="49875" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E354194" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49398" e_stop="49875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATG-AATCTTTTGATAAAATCAAATGCGGATCAGTTTGGTACTTGTGT</genome_strand>
        <mrna_strand>TGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC-TTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGTTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGATTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAAATCTTTTGATAAAATCAAATGCGGATCAGTTTGGGACTTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282025" ref_strand="+" ref_description="SGN-E282025 [cLES-2-J9]">
      <seq>tgaggcggtgaagtacaggagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttggggagacatttatcatttttccttttgactttttttttgtaataattcgaaaaatcttagagtgggtcaaagtttaaaaaccccacactcgtttcccttgttgaaggattattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaaatcttttgataaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49098" stop="50150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49398" g_stop="49850" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E282025" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49398" e_stop="49850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATG-AATCTTTTGATAAAATCAA</genome_strand>
        <mrna_strand>TGAGGCGGTGAAGTACAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC-TTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGTTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGATTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAAATCTTTTGATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289284" ref_strand="+" ref_description="SGN-E289284 [cLES-18-D11]">
      <seq>tgaagtacaagagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcctaagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttggtgttacatttgagtattcagttggggagacaattatcattattccttttgccttttttttttgtaataattcgaaaaatcttagagtgggtcaaagcttaaaaaccccacactcgtttcccttgttgaagggttattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaatcttttgataaaaaaaaaaaaaaaaaaaaccacccccctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49106" stop="50151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49406" g_stop="49845" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="441" polyA_stop="458"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E289284" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49406" e_stop="49845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAA</genome_strand>
        <mrna_strand>TGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221758" ref_strand="+" ref_description="SGN-E221758 [cLEL-10-E21](-)">
      <seq>caggagctcgcttgatgcattctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttggggagacatttatcatttttccttttgactttttttttgtaataattcgaaaaatcttagagtgggtcaaagtttaaaaaccccacactcgtttcccttgttgaaggattacccctgttttgtttgggcggaccttaaaaagagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49113" stop="50100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49413" g_stop="49799" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="395" polyA_stop="406"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E221758" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49413" e_stop="49799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTT</genome_strand>
        <mrna_strand>CAGGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC-TTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGTTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGATTACCCCTGTTTTGTTTGGGCGGACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361927" ref_strand="-" ref_description="SGN-E361927 [cLPP-11-I1]">
      <seq>gagctcgcttgatgcgttctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttggtgttacatttgagtattcagttggggagacaattatttatcatttttccttttgcctttttttgtaataattcgaaaaatcttagagtgggtcaaagcttaaaaaccccacactcgtttcccttgttgaagggttattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaatcttttgataaaatcaaatgcggatcagtttggtaaaaaaaaaaaaaaaaaaactcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49116" stop="50168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49416" g_stop="49865" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="454" polyA_stop="473"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E361927" ref_strand="-">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361927" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49416" e_stop="49865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGAC-A--A-TTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAAATGCGGATCAGTTTG</genome_strand>
        <mrna_strand>GAGCTCGCTTGATGCGTTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATTTATCATTTTTCCTTTTGCC---TTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAAATGCGGATCAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220362" ref_strand="+" ref_description="SGN-E220362 [cLEL-12-L14](-)">
      <seq>tcgcttgatgcattctcccagattgttaagaataagggtcccaaatctctgttcaagggtgctggtgctaacatcctccaaactgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttggggagacatttatcatttttccttttgactttttttttgtaataattcgaaaaatcttagagtgggtcaaagtttaaaaaccccacactcgtttcccttgttgaaggattattactgttttgtttgggcggaccttatttccattgcagagcttacagattctgaatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49120" stop="50133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49420" g_stop="49832" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="413" polyA_stop="428"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E220362" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49420" e_stop="49832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGA</genome_strand>
        <mrna_strand>TCGCTTGATGCATTCTCCCAGATTGTTAAGAATAAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCAAACTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC-TTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGTTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGATTATTACTGTTTTGTTTGGGCGGACCTTATTTCCATTGCAGAGCTTACAGATTCTGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404764" ref_strand="+" ref_description="SGN-E404764 [PPC-15-O17]">
      <seq>tcgatgcattctcccagattgttaagaatgaaggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgccggtgctggtgtgttggccggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggcggtgcctaagttggcctcgtaacatccttttagaattagatggtgatgaaaatctttttggtgttgcatttgagtattcagttggggagacaattatcatttttccttttgcctttttgtaataattcaaaatcttattagagtgggttaaagcttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49126" stop="49998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49424" g_stop="49751" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E404764" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49424" e_stop="49751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCC-TTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAA-AATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACAC</genome_strand>
        <mrna_strand>TCGATGCATTCTCCCAGATTGTTAAGAATGAAGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCCGGTGCTGGTGTGTTGGCCGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGCGGTGCCTAAGTTGGCCTCGTAACATCCTTTTAGAA-TTAGATGGTGATGAAAATCTTTTTGGTGTTGCATTTGAGTATTCAGTTGGGGAGACAATTATCATTTTTCCTTTTGCC-----TTTTTGTAATAATTCAAAATCTTATTAGAGTGGGTTAAAGCTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280469" ref_strand="+" ref_description="SGN-E280469 [cLER-1-A19]">
      <seq>caaaatgttattttccacacttaaaataacacaagtcccaaactgatccgcatttgattttatcaaaagatttcattcagaatctgtaagctctgcaattgaaataaggtccgcccaaacaaaacagtaataatccttcaacaagggaaacgagtgtggggtttttaaactttgacccactctaagatttttcggattattacaaaaaaaagtcgaaaggaaaaatgataaatgtctccccaactgaatactcaaatgtaacaacggaaagattttcatcaccatctaaattctaaaggatgttacgaggctgacttatgcaccaccagatccgtatttctttcccaaaacaagaacctgaagcttgtgatattcagccgacacaccagcaccagcaacagctcggaggatgttagcaccagcacccttgaacagagatttgggaccctcattcttaacaatctgggagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="-" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="50200" stop="49130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49903" g_stop="49430" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="-" ref_id="SGN-E280469" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49903" e_stop="49430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAATATTGTATACCACACTTAAAATAACACAAGTACCAAACTGATCCGCATTTGATTTTATCAAAAGA-TTCATTCAGAATCTGTAAGCTCTGCAATTGAAATAAGGTCCGCCCAAACAAAACAGTAATAACCCTTCAACAAGGGAAACGAGTGTGGGGTTTTTAAGCTTTGACCCACTCTAAGATTTTTCGAATTATTACAAAAAAAAAAGGCAAAAGGAATAATGATAATTGTCTCCCCAACTGAATACTCAAATGTAACACCAAAAAGATTTTCATCACCATCTAAATTCTAAAGGATGTTACGAGGCTGACTTAGGCACCACCAGATCCGTATTTCTTTCCCAAAACAAGAACCTGAAGCTTGTCATATCCAGCCAACACACCAGCACCAGCAACAGCTCGGAGGATGTTAGCACCAGCACCCTTGAACAGAGATTTGGGACCCTCATTCTTAACAATCTGGGAGAATG</genome_strand>
        <mrna_strand>CAAAATGTTATTTTCCACACTTAAAATAACACAAGTCCCAAACTGATCCGCATTTGATTTTATCAAAAGATTTCATTCAGAATCTGTAAGCTCTGCAATTGAAATAAGGTCCGCCCAAACAAAACAGTAATAATCCTTCAACAAGGGAAACGAGTGTGGGGTTTTTAAACTTTGACCCACTCTAAGATTTTTCGGATTATTAC--AAAAAAAAGTCGAAAGGAAAAATGATAAATGTCTCCCCAACTGAATACTCAAATGTAACAACGGAAAGATTTTCATCACCATCTAAATTCTAAAGGATGTTACGAGGCTGACTTATGCACCACCAGATCCGTATTTCTTTCCCAAAACAAGAACCTGAAGCTTGTGATATTCAGCCGACACACCAGCACCAGCAACAGCTCGGAGGATGTTAGCACCAGCACCCTTGAACAGAGATTTGGGACCCTCATTCTTAACAATCTGGGAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218067" ref_strand="+" ref_description="SGN-E218067 [cLEL-23-F8](-)">
      <seq>ctcccagattgttaagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49134" stop="49892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49434" g_stop="49592" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E218067" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>159</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49434" e_stop="49592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAG</genome_strand>
        <mrna_strand>CTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222251" ref_strand="+" ref_description="SGN-E222251 [cLEL-16-A19](-)">
      <seq>cccagattgttaagaataagggtcccaaatctctgttcaagggtgctggtgctaacatcctccaagctgttgctggtgctggtgtgttggctggatataacaagcttcagggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctagtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttggggagacatttatcatttttccttttgactttttttttgtaataatgcgaaaaatcttagagtgggtcaaagtttaaaaaccccacactcgtttcccttgttgaaggattatttctgctttccaacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49136" stop="50084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49436" g_stop="49784" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="352" polyA_stop="368"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E222251" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49436" e_stop="49784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCA-GGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTT</genome_strand>
        <mrna_strand>CCCAGATTGTTAAGAATAAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCAAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATAACAAGCTTCAGGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTAGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC-TTTTTTTTTGTAATAATGCGAAAAATCTTAGAGTGGGTCAAAGTTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGATTATTTCTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448173" ref_strand="+" ref_description="SGN-E448173 [cSTS-1-P4]">
      <seq>caagaatgagggtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgccggtgctggtgtgctggccggatatgacaagcttcaggttctggttttgggaaagaaatacggatctggcggtgcctaagtcagcctcgtaacatccttttagaatttagatggtgatgaaaatctttttggtgttacatttgagtattcagttggggagacaattaattatcatttttccttgtgcctttttgtaataattcaaaatcttaaagagtgggttaaagcttaaaaaccccacactcgtttcccttgttgaagggttattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaatcttttgataaaatcaaatgcggatcagtttgggactaatgttaatttaagtgtggtacacaatattttgccctaaccatcttgttttcataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49147" stop="50204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49446" g_stop="49904" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="478" polyA_stop="489"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E448173" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49446" e_stop="49904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCC-TTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTT-T-TTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAAATGCGGATCAGTTTGGTACTTGTGTTATTTTAAGTGTGGTATACAATATTAAGC</genome_strand>
        <mrna_strand>CAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCCGGTGCTGGTGTGCTGGCCGGATATGACAAGCTTCAGGTTCTGGTTTTGGGAAAGAAATACGGATCTGGCGGTGCCTAAGTCAGCCTCGTAACATCCTTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTA--ATTA-TCATTTTTCCTTGTGCCTTTTTGTAATAATTCAAAATCTTAAAGAGTGGGTTAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAAATGCGGATCAGTTTGGGACTAATGTTAATTTAAGTGTGGTACACAATATTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217991" ref_strand="+" ref_description="SGN-E217991 [cLEL-23-F8](-)">
      <seq>gtcccaaatctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttggggagacatttatcatttttccttttgactttttttttgtaataattcgaaaaatcttagagtgggtcaaagtttaaaaaccccacactcgtttcccttgttgaaggattattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaaatcttttgataaaatccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49157" stop="50151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49457" g_stop="49850" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="395" polyA_stop="411"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E217991" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49457" e_stop="49850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATG-AATCTTTTGATAAAATCAA</genome_strand>
        <mrna_strand>GTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC-TTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGTTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGATTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAAATCTTTTGATAAAATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400853" ref_strand="+" ref_description="SGN-E400853 [PPC-2-G16]">
      <seq>tctctgttcaagggtgctggtgctaacatcctccgagctgttgccggtgctggtgtgttggccggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggcggtgcctaagttggcctcgtaacatccttttagaattagatggtgatgaaaatctttttggtgttgcatttgagtattcagttggggagacaattatcatttttccttttgcctttttgtaataattcaaaatcttattagagtgggttaaagcttaaaaaccccacacttgtttcccttgttgaagggttattactgttttgcttgggcggacctgatttcaattgccagagcttacagattctgaatgaatcttatgataaaatcaaatgcggattagtttgggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49165" stop="50169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49465" g_stop="49869" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E400853" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49465" e_stop="49869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCC-TTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAA-AATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTG-CAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAAATGCGGATCAGTTTGGTAC</genome_strand>
        <mrna_strand>TCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCCGGTGCTGGTGTGTTGGCCGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGCGGTGCCTAAGTTGGCCTCGTAACATCCTTTTAGAA-TTAGATGGTGATGAAAATCTTTTTGGTGTTGCATTTGAGTATTCAGTTGGGGAGACAATTATCATTTTTCCTTTTGCC-----TTTTTGTAATAATTCAAAATCTTATTAGAGTGGGTTAAAGCTTAAAAACCCCACACTTGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGCTTGGGCGGACCTGATTTCAATTGCCAGAGCTTACAGATTCTGAATGAATCTTATGATAAAATCAAATGCGGATTAGTTTGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732529" ref_strand="+" ref_description="SGN-E732529 [LB02BF12]">
      <seq>ctctgttcaagggtgctggtgctaacatcctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcctaagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttggtgttacatttgagtattcagttggggagacatttatcatttttccttttgacttttttttcgtaataattcgaaaaatcttagagtgggtcaaagtttaaaaaccccacactcgtttcccttgttgaagggttattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaaatcttttgataaaatcaaatgcggatcagtttgggacttgtgttattttaagtgtggtatacaatattttgcactaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49166" stop="50205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49466" g_stop="49904" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="443" polyA_stop="463"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E732529" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49466" e_stop="49904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATG-AATCTTTTGATAAAATCAAATGCGGATCAGTTTGGTACTTGTGTTATTTTAAGTGTGGTATACAATATTAAGC</genome_strand>
        <mrna_strand>CTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC-TTTTTTTTCGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGTTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAAATCTTTTGATAAAATCAAATGCGGATCAGTTTGGGACTTGTGTTATTTTAAGTGTGGTATACAATATTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236251" ref_strand="+" ref_description="SGN-E236251 [cLED-20-A9]">
      <seq>tcaagggtgctggtgctaacattctccgagctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttggggagacatttatcatttttccttttgactttttttttgtaataattcgaaaaatcttagagtgggtcaaagtttaaaaaccccaaaaaaaaaaaaaaaaaaaataaaaaaataaaaaaaaaaaaaaaaaaataaaataaatatataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49172" stop="87101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49472" g_stop="49750" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49751" i_stop="50922" i_length="1172">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50923" g_stop="50947" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="303" r_length="25" r_score="0.840"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50948" i_stop="51238" i_length="291">
            <donor d_prob="0.222" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51239" g_stop="51277" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="342" r_length="39" r_score="0.744"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E236251" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49472" e_stop="49750"/>
          <exon e_start="50923" e_stop="50947"/>
          <exon e_start="51239" e_stop="51277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAAATGCGGATCAGTTTGGTACTTGTGTTATTTTAAGTGTGGTATACAATATTAAGCATGCGTACATTTTCTTTTTTTATTCAACTTGACACATTTTATTTTGTTGTGGCATAAGTTTCTTAAAAAATTAAATAGAAGGATGAAACTTGCAATATTTTGGATAGCGTAAGCATTTTTTTTTTCACATATATAATAAAGGATGTTCTTTAGGTTTAAGTCATACTTAAGATATGATTTTAGTCAAAAACTCCACAACCCATATATGATTATTTTCTAAGAAAATAATTTAGAATTTTTTCACTTATATAATAAAGGATGTACTTTAGGTTTAAGTCATATTTCAGATATGATCTTAGCTAAAAACTCCACAACCCATATACAATTTTTTTCAAAGAAAAAAATTTAGAAACAACATAAACATCGTCTAATTCACAGTTTCTAAATAGGAATAACCATAAAACACAAAAAAAATCTGAATTTTGTTCACTACAGTAAAGTAGCATTTTCTAATGAAAAATCACTCTTGGTAGTATTTCTTATTGAACTAGTGAAGATGTCATGAATATTTTTCTGATAAATATAAAGAAAATTATTATAGATAAATAAAGCGAATGTGCATAAATTAGTGCCTACATATGGTTTAAAACATTTGTTACTGTCAAAAGGTAATGAGATTTTACAATCCAAGTAGTAAGCATGAAAGGAGAGTTTAAAAATAGGGAAAAGAGTCAAATATACTCCTCAACTATTCAAAAAGGTCTAGATATACCCTCCGTTTGAAGTTTGGTTCACTGATGCTTTCGCCATCCAACTTTTGGTCCAAATATGCTCTTATGGACGTTAGTTGTCATGTTGGACATATCCAACTCATTTTTTATTTCTTTAAATGCCACATAGAATTGTCATGTCATTTTGGCCTTATCACATAATATTTATATGAAAATGAAAAGATATTCGGACTCATAAACTTAATCCGACCCATAAATCAACCCCTTTTAAATAAATTATTCGACCAATTTTCAATAATTTTGTTTTATTTTTTTCGATAAATTCCGAAAATGAGTAATTGATTAATAAAAAAATAGAAAAATATGAAAAAAGTATAAAATCAACGCCAAAAATTCATAAATAATTATAGTAACCTTAAATTCAGTATAAACACTTTTTTTTTGAATTCTTTTATTTTTTCAATAAATTCCGAAATGAGTAATTGATTAATAAAAAGTATGAAAAAAATATAAAATTAACGCCAAAAATTAAAAAATAAATACAGTAACCTTAAATTCAACAATTTCAACATTTTTTTAATTTTTCATTTTTTTGACAAATCCCAAAAATGAGTTTATTAACAAAAAATATGAAAAAATATAAAAATTACGCAAAAAATTTAGAAATAAAAAATAGGAAAATATGAAAAAAATATAAAATAA</genome_strand>
        <mrna_strand>TCAAGGGTGCTGGTGCTAACATTCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC-TTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGTTTAAAAACCCCAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAATAAAAAAA...................................................................................................................................................................................................................................................................................................TAAAAAAAAAAAAAAAAAAATAAAATAAATATATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458962" ref_strand="+" ref_description="SGN-E458962 [cPRO-32-N14]">
      <seq>taacatcctccgagctgttgccggtgctggtgtgttggccggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggcggtgcctaagttggcctcgtaacatccttttagaattagatggtgatgaaaatctttttggtgttgcatttgagtattcagttggggagacaattatcatttttccttttgcctttttgtaataattcaaaatcttattagagtgggttaaagcttaaaaaccccacacttgtttcccttgttgaagggttattactgttttgtttgggcggacctgatttcaattgccagagcttacagattctgaatgaatcttatgataaaatcaaatgcggattagtttgggactaatgttgtttaaagtgtggtatacaatattttgcccttgcaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49188" stop="50204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49488" g_stop="49904" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="421" polyA_stop="446"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E458962" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49488" e_stop="49904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCC-TTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAA-AATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTG-CAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAAATGCGGATCAGTTTGGTACTTGTGTTATTTTAAGTGTGGTATACAATATTAAGC</genome_strand>
        <mrna_strand>TAACATCCTCCGAGCTGTTGCCGGTGCTGGTGTGTTGGCCGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGCGGTGCCTAAGTTGGCCTCGTAACATCCTTTTAGAA-TTAGATGGTGATGAAAATCTTTTTGGTGTTGCATTTGAGTATTCAGTTGGGGAGACAATTATCATTTTTCCTTTTGCC-----TTTTTGTAATAATTCAAAATCTTATTAGAGTGGGTTAAAGCTTAAAAACCCCACACTTGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTGATTTCAATTGCCAGAGCTTACAGATTCTGAATGAATCTTATGATAAAATCAAATGCGGATTAGTTTGGGACTAATGTTGTTTAAAGTGTGGTATACAATATTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693972" ref_strand="+" ref_description="SGN-E693972 [LH_Ea02L10](-)">
      <seq>ctccgagctgttgctggtgctggtgtgttggctggatatgacaaacttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttggtgttacatttgagtattctgttggggagacaattattatcatttttccttttgcctttttttgtaataattcgaaatcttagagtgggtaaaagtttaaaaaccccacacttgtttcccttgttgaagggttattactgttttatttgagcggaccttattcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49195" stop="50106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49495" g_stop="49800" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="308" polyA_stop="323"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E693972" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49495" e_stop="49800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGAC-A--ATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTA</genome_strand>
        <mrna_strand>CTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAACTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCTGTTGGGGAGACAATTATTATCATTTTTCCTTTTGCC---TTTTTTTGTAATAATTCG--AAATCTTAGAGTGGGTAAAAGTTTAAAAACCCCACACTTGTTTCCCTTGTTGAAGGGTTATTACTGTTTTATTTGAGCGGACCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216841" ref_strand="+" ref_description="SGN-E216841 [cLEL-1-J21](-)">
      <seq>gctgttgctggtgctggtgtgttggctggatatgacaagcttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttggggagacatttatcatttttccttttgactttttttttgtaataattcgaaaaatcttagagtgggtcaaagtttaaaaaccccacactcgtttcccttgttgaaggattattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49201" stop="50133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49501" g_stop="49832" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="332" polyA_stop="349"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E216841" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49501" e_stop="49832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGA</genome_strand>
        <mrna_strand>GCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGGAGACATTTATCATTTTTCCTTTTGAC-TTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGTTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGATTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692925" ref_strand="+" ref_description="SGN-E692925 [LH_Ea09P19]">
      <seq>cacgttctggatatgacaaacttcaggttcttgttttgggaaacaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttggtgttacatttgagtattctgttggggagacaattatttatcatttttccttttgcctttttttttttgtaataattcgaaaaatcttagagtgggtcaaagcttaaaaaccccacattcgtttcccttgttgaagggttattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaatcttttgataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49226" stop="50151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49518" g_stop="49853" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E692925" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49518" e_stop="49853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGAC-A--A-TTATCATTATTCCTTTTGCC-TTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAAATG</genome_strand>
        <mrna_strand>CACGTT--CTGGATATGACAAACTTCAGGTTCTTGTTTTGGGAAACAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCTGTTGGGGAGACAATTATTTATCATTTTTCCTTTTGCCTTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACATTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E696765" ref_strand="+" ref_description="SGN-E696765 [LH_Ea09P19](-)">
      <seq>ggctggatatgacaaacttcaggttcttgttttgggaaagaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttggtgttacatttgagtattctgttggggagacaattatttatcatttttccttttgcctttttttttttgtaataattcgaaaaatcttagagtgggtcaaagcttaaaaaccccacattcgtttcccttgttgaagggttattactgttttgtttgggcggaccttatttcaattgaagggcttacagattctgaatgaatctttgataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49224" stop="50151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49524" g_stop="49853" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E696765" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49524" e_stop="49853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGAC-A--A-TTATCATTATTCCTTTTGCC-TTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAAATG</genome_strand>
        <mrna_strand>GGCTGGATATGACAAACTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCTGTTGGGGAGACAATTATTTATCATTTTTCCTTTTGCCTTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACATTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGAAGGGCTTACAGATTCTGAATGAATC-TTTGATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411818" ref_strand="+" ref_description="SGN-E411818 [STM-15-E20]">
      <seq>ttatcataagattcattcagaatctgtaagctctggcaattgaaatcaggtccgcccaaacaaaacagtaataacccttcaacaagggaaacaagtgtggggtttttaagctttaacccactctaataagattttgaattattacaaaaaggcaaaaggaaaaatgataattgtctccccaactgaatactctaatgcaacaccaaaaagattttcatcaccatctaattctaaaaggatgttacgaggccaacttaggcaccgccagatccgtatttctttcccaaaacaaaaacctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="-" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="50144" stop="49241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49844" g_stop="49541" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="-" ref_id="SGN-E411818" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49844" e_stop="49541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCAAAAGATTCATTCAGAATCTGTAAGCTCT-GCAATTGAAATAAGGTCCGCCCAAACAAAACAGTAATAACCCTTCAACAAGGGAAACGAGTGTGGGGTTTTTAAGCTTTGACCCACTCTAA-GATTTTTCGAATTATTACAAAAAAAAAAGGCAAAAGGAATAATGATAATTGTCTCCCCAACTGAATACTCAAATGTAACACCAAAAAGATTTTCATCACCATCTAAATTCTAAAGGATGTTACGAGGCTGACTTAGGCACCACCAGATCCGTATTTCTTTCCCAAAACAAGAACCTGAA</genome_strand>
        <mrna_strand>TTATCATAAGATTCATTCAGAATCTGTAAGCTCTGGCAATTGAAATCAGGTCCGCCCAAACAAAACAGTAATAACCCTTCAACAAGGGAAACAAGTGTGGGGTTTTTAAGCTTTAACCCACTCTAATAAGATTTTGAATTATTAC-----AAAAAGGCAAAAGGAAAAATGATAATTGTCTCCCCAACTGAATACTCTAATGCAACACCAAAAAGATTTTCATCACCATCTAATTCTAAAAGGATGTTACGAGGCCAACTTAGGCACCGCCAGATCCGTATTTCTTTCCCAAAACAAAAACCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237115" ref_strand="+" ref_description="SGN-E237115 [cLEL-7-F8](-)">
      <seq>caggttcttgttttgggaaaaaaatacggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttgggaaggacatttatcatttttccttttgactttttttttgtaataattcgaaaaatcttagagtgggtcaaagtttaaaaaccccccactcgtttcccttgttgaaggattattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaaatcttttgataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49243" stop="50151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49543" g_stop="49845" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="305" polyA_stop="318"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E237115" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49543" e_stop="49845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGA-GACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATG-AATCTTTTGATAAA</genome_strand>
        <mrna_strand>CAGGTTCTTGTTTTGGGAAAAAAATACGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGAAGGACATTTATCATTTTTCCTTTTGAC-TTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGTTTAAAAACCCCCCACTCGTTTCCCTTGTTGAAGGATTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAAATCTTTTGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E219287" ref_strand="+" ref_description="SGN-E219287 [cLEL-11-D18](-)">
      <seq>ttgggaaaagaaatgcggatctggtggtgcataagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcagttgggaagacatttatcatttttccttttgactttttttttgtaataattcgaaaaatcttagagtgggtcaaagtttaaaaaccccacactcgtttcccttgttgaaggattattactgttttgtttgggcggaccttatttcaattgcagagcttacagattctgaatgaaatcttttgataaaatcaaatgcggatccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49255" stop="50159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49554" g_stop="49860" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="308" polyA_stop="326"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E219287" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49554" e_stop="49860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATG-AATCTTTTGATAAAATCAAATGCGGATCA</genome_strand>
        <mrna_strand>TTGGGAAAAGAAATGCGGATCTGGTGGTGCATAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGTTGGGAAGACATTTATCATTTTTCCTTTTGAC-TTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGTTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGATTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAAATCTTTTGATAAAATCAAATGCGGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220203" ref_strand="+" ref_description="SGN-E220203 [cLEL-12-L14](-)">
      <seq>ctggtggtgcataaagtcagcctcgtaacatcctttagaatttagatggtgatgaaaatctttttgttgttacatttgagtattcaggttggggagacatttatcatttttccttttgactttttttttgtaataattcgaaaaatcttagagtgggtcaaagtttaaaaaccccacactcgtttcccttgttgaaggattattactgttttgtttgggcggaccttatttcaattacagagcttacagattatgaatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="49274" stop="50133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49574" g_stop="49832" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="261" polyA_stop="276"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E220203" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>259</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49574" e_stop="49832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTGGTGCCT-AAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCA-GTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGA</genome_strand>
        <mrna_strand>CTGGTGGTGCATAAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGTTGTTACATTTGAGTATTCAGGTTGGGGAGACATTTATCATTTTTCCTTTTGAC-TTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGTTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGATTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTACAGAGCTTACAGATTATGAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537417" ref_strand="+" ref_description="SGN-E537417 [letfr91]">
      <seq>ttcttcatataaggcgatacaaactcaaatcccaaattcataatcttcaatcgatttatacagttcatatattatatatatatatatatatatatatatgtagctctagcagcatcaacaacagctatacttagttttcttctttatttgactatttaattaaataagataaatatagaactagggttagggttttgctgtttaatccgctttcatggcggaagacgaggaatctttgaataaacctatcattgctgacgagctaaaactcgataacgttaccggattgggcgccacgtcaccatcactggttggtgagggcgatacggcttcgccggcgccggaggtgggcccaccatcagtcgaagaatcggaggttgctctagacagttcacaacaggctggcgttggtgatgctgacgtgggtgcatcgatgggggtgtcagagagttctcagcagggtaatggtgatgctgaggaagttgaggcggttagggtgactgaaaatgaagcggttacggaggaaaatgttacggctttggagaaagatgaggtgactgaggcggccttggtgagaaatgaggggacggaggaaaatgtgacggctttggagaaagatgaggtgacagaggtggctttagagaatgaggtggcagaggcattggaagtcacaaagggagaagcagaaatttgtatgccagagggtactggcgatgaagaagtggtcatgactggcaaggaaaatgagaatgatgaaattttggctggaaatgataatattgaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="101958" stop="103343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102258" g_stop="103043" g_length="786"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="786" r_length="786" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E537417" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102258" e_stop="103043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCATATAAGGCGATACAAACTCAAATCCCAAATTCATAATCTTCAATCGATTTATACAGTTCATATATTATATATATATATATATATATATATATGTAGCTCTAGCAGCATCAACAACAGCTATACTTAGTTTTCTTCTTTATTTGACTATTTAATTAAATAAGATAAATATAGAACTAGGGTTAGGGTTTTGCTGTTTAATCCGCTTTCATGGCGGAAGACGAGGAATCTTTGAATAAACCTATCATTGCTGACGAGCTAAAACTCGATAACGTTACCGGATTGGGCGCCACGTCACCATCACTGGTTGGTGAGGGCGATACGGCTTCGCCGGCGCCGGAGGTGGGCCCACCATCAGTCGAAGAATCGGAGGTTGCTCTAGACAGTTCACAACAGGCTGGCGTTGGTGATGCTGACGTGGGTGCATCGATGGGGGTGTCAGAGAGTTCTCAGCAGGGTAATGGTGATGCTGAGGAAGTTGAGGCGGTTAGGGTGACTGAAAATGAAGCGGTTACGGAGGAAAATGTTACGGCTTTGGAGAAAGATGAGGTGACTGAGGCGGCCTTGGTGAGAAATGAGGGGACGGAGGAAAATGTGACGGCTTTGGAGAAAGATGAGGTGACAGAGGTGGCTTTAGAGAATGAGGTGGCAGAGGCATTGGAAGTCACAAAGGGAGAAGCAGAAATTTGTATGCCAGAGGGTACTGGCGATGAGGAAGTGGTCATGACTGCAAAGGAAAATGAGAATGATGAAATTTTGGCTGGAAATGATAATATTGAGGG</genome_strand>
        <mrna_strand>TTCTTCATATAAGGCGATACAAACTCAAATCCCAAATTCATAATCTTCAATCGATTTATACAGTTCATATATTATATATATATATATATATATATATATGTAGCTCTAGCAGCATCAACAACAGCTATACTTAGTTTTCTTCTTTATTTGACTATTTAATTAAATAAGATAAATATAGAACTAGGGTTAGGGTTTTGCTGTTTAATCCGCTTTCATGGCGGAAGACGAGGAATCTTTGAATAAACCTATCATTGCTGACGAGCTAAAACTCGATAACGTTACCGGATTGGGCGCCACGTCACCATCACTGGTTGGTGAGGGCGATACGGCTTCGCCGGCGCCGGAGGTGGGCCCACCATCAGTCGAAGAATCGGAGGTTGCTCTAGACAGTTCACAACAGGCTGGCGTTGGTGATGCTGACGTGGGTGCATCGATGGGGGTGTCAGAGAGTTCTCAGCAGGGTAATGGTGATGCTGAGGAAGTTGAGGCGGTTAGGGTGACTGAAAATGAAGCGGTTACGGAGGAAAATGTTACGGCTTTGGAGAAAGATGAGGTGACTGAGGCGGCCTTGGTGAGAAATGAGGGGACGGAGGAAAATGTGACGGCTTTGGAGAAAGATGAGGTGACAGAGGTGGCTTTAGAGAATGAGGTGGCAGAGGCATTGGAAGTCACAAAGGGAGAAGCAGAAATTTGTATGCCAGAGGGTACTGGCGATGAAGAAGTGGTCATGACTGGCAAGGAAAATGAGAATGATGAAATTTTGGCTGGAAATGATAATATTGAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689427" ref_strand="+" ref_description="SGN-E689427 [t3_tus_84_L17]">
      <seq>cattaggggttgtacgaaagcatatcatccctcgtgtatcccttgggatgaggaattttttcgtgccaagggtcgatggaattgtggttggcatcagtgcactatttgtcagatctaatgcgtgctatttgtgctacacatgcacattttcattatgcaaggggtgcataaaagatgatgtcatcctatgtgtaagaggaaacaagggattttgcaagaactgcatgagaatggtcaagctaatagaaggcattggtaaagaagagaatgatggtccgatcgattttgatgacaagagtagctttgaatatctgttcacggactacttaatggattttaaagcgaagctatctttatcttcagatgaaattgctgatgccaaacgtcctcggaagggagctgatgtgtcagcttccaaacaagaactgtctcaggcacaacgtgacaataatgatgatggaggttctggttcatatgcatccattgacacattgcaagcaagtataatcaaaagaagaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="103751" stop="109102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103944" g_stop="103949" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103950" i_stop="104057" i_length="108">
            <donor d_prob="0.850" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104058" g_stop="104137" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="86" r_length="80" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104138" i_stop="107720" i_length="3583">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107721" g_stop="107905" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="272" r_length="186" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107906" i_stop="108552" i_length="647">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108553" g_stop="108802" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="522" r_length="250" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E689427" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103944" e_stop="103949"/>
          <exon e_start="104058" e_stop="104137"/>
          <exon e_start="107721" e_stop="107905"/>
          <exon e_start="108553" e_stop="108802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTAGGTAAAGTTTGTTTATTTTGGAACCATATTCATGTTATATTTTGCTCTGTTTGTGTTTTTTGGAATTTGCTCACGTGGTGGTACCTTTTTGGTGCTTTCTGTGGTATAGGGGTTGTACGAAAGCATATCATCCCTCGTGTATTGATAGGGATGAGGAATTTTTTCGTGCCAAGGGTCGATGGAATTGTGGTGAGTGCATTAATCTACCTCTTTGTTGACTCTTTCTGACTTTATTGAGTAACATGATCAATGTAGAACCAAGTTCTCTTTTATTATATTTTTTTAATGATAGATATACACATTGATATGTCTTCCACACTTTGATTTCTAAGGCTTATCTAAAATAAGCAAAAAGATACTCTATTTTGAACTTACAAATAAATTTGTGGACAATATTTTTGCCGATAAATCTAACTTCATTCATTAATAAGATACCAAGATGGTTTAGCTACCTTGAAATAACATCCTATTCCTTTTATATTTCAAATAATCCGGAGTTGCATGATGGAGTGGTTCTCAAGCTGGTTTCCTACCTTTTCTAATCTTCTGAACATTAGCTTGGAACTGCTTCTCAGAGTCTTTAGTGGGACCTAGCTTTTGAGGAAAAATAGTCTGATGCTATGGTTGATTAGGGTGAAAAGGAGTTGGGCAAGACAAGGTAAAGCAAAAGAGGAGGGGTGATGGTCATTTTTCCATTCAACGTGGAAGGAGTAAAAATCAAAATTTTTTCTAACCCTTCAGAAATTAGATATAGTTGAAGGAGAAAATCTCCTGCAATTCCCTAGTTTGATGATAAATGTGATGTAATTGATGCATTTTGATAGTGCTTGCAATGCATGCATGCTTATTCAAATTATTTATGTTGTTCTGATACTATACAGTTTTGGGAGTTTAAAATTCTTGTCAGTAATAGCATGCAGTTTTCTTCTGATAAAAATATACTATACAGTTTTGGTACATGAAATTCACTGATCACTTGACTTTAGTTGCTTTTGTGGGTTTGAACTGTACTACAAGGTTGTCTAGGCTATTTTTAACATTATATCCATTCTATATTTATTAGTACCCTAAAGTATTTCTTATTGTTTCTTTTGACGACTTATTTTTCTTTCTTTTCCTTCCGTTCTCTTATTTTCATTTCTTCATTAAATATTGTCTTGACTGCTTTATTCTTCGGAGATTGAGGATGAGTACGATTATGCACTAGTTGTAGGGTTGACCTCTTCATGAGAGTTCAACCTTTCACTCTCCTAATTCTGTTTCCTCTTTTGTTTTGTTTTATCTGAAATTTATTGTTTTGTTTTCTTTTTGCTTTGACTTTGGGCCTGACCTATTGGTGGTTGGTCTTCTTGTGTTTGTCTATATTTTCTTAGTTTATAAAAAGGTCTTTTGCCAAGATTTGATTGAAAAAAAAACAATTGAGCACTAGTTCTTTTGTTCTGGTTTCTCACAGGAAAGCATGCATTTGTCAACTTCAAGTTAAATGTGGCTGAAGTGACTAGGCTTCATCTAAATTGAGACTATACTATGTGCTTTATCTTTCCTCCCATATTTTTCCTGCTTTGACATATGTAATTACATGACAACAATTCATCCTTAAAAAAAAGGAAAATACATGCCAATAATGTAGATAGAGCTTCTTGGCTGAGCTTCATGAAGATGTGAACCAAAGACTTACTCGTGCTTTTATCAAAACCACATCACATCTAAATGGAGGAAAAAGGACCACAATTTTTTATTTATTTATCCAAATACACTATACATCATTATTTTAATGATGTTCTACGTGCTTGCTTATCGAGAAAGGAAAAGAACATACACTTATTCCTAGCCACGTGAAAGATCCATGAAATGTGCAAAACTACAATGAACTTTGCCATTGTTTTCTCTTAAGTAGATATAGAAGCCATCCGATAAAGAGAGATTTGGGATATCATTGAACCATCAAAATCTCAGCTTGAGCCATGTCACATTTACAATAAGAGATATGGCAGTATAGCCTAAAACTCAAAATAACGATGACCTCGGTACCTAATGGAGAGTATATAGTCTCCATTTTGTTGGTACTTAATAGATTCTTGAATATGAATCATTCCGGTGTCAACCTATTAAGTGCATTCCTTTTCCTTCCTTTTGCAACCACCTACTAGCTCTTATCACCTATTAGCTCTTAATAGGTTTGAATTATTCATTATTCACGTATTGTCCCAAGTCCTAAAATTGTTAAGATCTTAACTTGAAGGTTTTGTGAATGTGACAATACCACCATTCAACTACCCCTACCATCAATTTTGTCCATAGCCTGACATCACTATCAATCACTTTTATCACCCGTCAAGGCTTGACTGCATAATCATCTCCGTGAACGACCACCACAAACCACCAAGCACCTCTGCCATCAACTACCTCCATTACCACAAACCATCTTCTCCCTAGCTTCCCCTGTATAACCACCACCACTATTAACCATCACCATCAACAATTTCCTCCACTACTAGTCACCATTAGCTACCTCTACTACAAACTTTCACCGCACTCCCACTACCACTAACCATCACCATCTGCTAAACTGCTCATCCATCATCTATTGTCATCAGCACACAACCACATCCAGCGATTGTGCACAACCACCACCGACCTCCTCGACCAGGCACCATGAACCATTATCATCAAATACCCACCAATGCCCACACTGTTGGAGTGTGGTTCATCAAATAAACATTATACAACATCATGTAAATTAATATATTGAGGGTATAAATTATATTTATTAATTTCTTCTATATAAAGATGAATTATAACCTTCTGATGTTGTGGAAAAAACAACCTTGTTCAGATTTAGATACAATATCTTAGTAATCAGATGTGCGTTTGGATCCAAATATCTTAATAAAAATATAGGGGGCCTTAGCCTTATATCCATCAGTTTAAAACACAATGTTATTAGTGCTACATTTATGAGGTAGAGCCATGAAGACAATGAGCTGAACTGTTAGTTGATTGAAAGACGGAGAAGGTTTACAGTACATATTAATGGATGTATTTCATAAAAGTGGCCACGAAAACTAATAAAGAAGTTTGTGAACGACAGAGAGGTGGTTTTGGTGTTAGACTAACAATAGAATGGAAGGAAATTAACAAAGACAAAGGTGGATTTGTCCTTTGACAAATGATTGTGCAGTACCAGTTGGGTCGTGTAGATGAATCATGAATGATATAGAGGAGGAATCGGGATACTGGTACATAGAATACATTAATCAAATCTATTTCCATTTTTACAGAAGGTGATTGTAATTATTTTAAGTTGGAATGGAGTTCTCTTGAAGTTCCACTTAACGAGTGTGGAACCAGTGTTGTCTCTATGTATAGTTTGTATGCATTTTTCCTCCTGTGGGCAGATTTCAATCAATGACTTACTTTGGGTTCTTGAGTAGAGAAATGATGACTTTTGGGGACATGTAATTTATATTGTTCACTTCTGCCATCTGATTCATAACTCCTCCCGTGTTTCCTTGAGTTGATGGGAATTTGTATTGGTTTATGCTTGTAGTATTGCATGAAAAAATTTATTAACGCACTATTAAATTGAGAATGTCTATTAAAAAAAGTTCTATCATTGAGAGCTCTAAAGTATCACCTTAAGTACTACTCCTTATTTGAATTCATGACATGAAAAAAACAAACTGTCTGCTATACCATTTAACTTTGAAATATGTTTCTTCTTCTAGTTGCCTACTGCTTTTACATTGTAGCTCCTTTTGTACTTTTCCAGGTTGGCATCAGTGCACTATTTGTCAGA-AGAATGCTTGCTATTTGTGCTACACATGCACATTTTCATTATGCAAGGGGTGCATAAAAGATGATGTCATCCTATGTGTAAGAGGAAACAAGGGATTTTGCAAGAACTGCATGAGAATGGTCAAGCTAATAGAAGGCATTGGTAAAGAAGAGAATGATGTATGTCGTTCTATTATACTTGCTATCTTTTTGAGTTGTTGATTGGATTAAGCTATTCTCAACCAACGTTGTCACACATCCTATGCATATGCATAACTTTTTAACTATGATTAGCATTCAGTTAAAATATAAGTTGCTGCTAGTTAATTGGAAACATGCATAAAGAAAAATTCCAAGAAAATTAAAGAGCACATCCATAGCTGATTGGCTAAAAAGTAAGGAAGTTGGGCCGGGGAGTTACCCTATCATATCCATTATCCAATCCACTTAAGAGCATGGTGATTTTGGTTATAAACTTCTACGCTACATCAGGCAGTTATGACATATGAGAGACCTAGTTAAATACTCTAGGTGGGTTACGTTTATTGGTGAGGTAGTAGGCATATAGTGAAATGCATATTGATATCAATTTTGGGTTGTTATATTAAATTTATATCTAAATATTATCTGATGTAGTATAAATAGAATGTTTAAGTTCTCTTTTATACGGTTGCTAGCAACATGAACTATTCTGTGTTTTTATTATCTGTTCTTTTTTTCTGGTGGTAATTGATTGATGTTCCTAACTTCTTCCTCCTTAAACTGGGTAGTCTTCTTAATGTAAACCTTTAGCACAGTTCTGATCTTCTTGCTCTTTGCTGGCCCAGGGTCCGATAGATTTTGATGACAAGAGTAGCTTTGAATATCTGTTCAAGGACTACTTAATGGATTTAAAAGCGAAGCTATCTTTATCTTCAGATGAAATTGCTGATGCCAAAAGTCCTCGGAAGGGAGCTGATGTGTCAGCTTCCAAACAAGAACTGTCTCAGGCACAACGTGACAATAATGATGATGGAGGTTCTGGTTCAGATGCATCCATTGACACATTGGAAGCAAGTAAAATCAAAAGAAGAAAGC</genome_strand>
        <mrna_strand>CATTAG............................................................................................................GGGTTGTACGAAAGCATATCATCCCTCGTGTATCCCTTGGGATGAGGAATTTTTTCGTGCCAAGGGTCGATGGAATTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCATCAGTGCACTATTTGTCAGATCTAATGCGTGCTATTTGTGCTACACATGCACATTTTCATTATGCAAGGGGTGCATAAAAGATGATGTCATCCTATGTGTAAGAGGAAACAAGGGATTTTGCAAGAACTGCATGAGAATGGTCAAGCTAATAGAAGGCATTGGTAAAGAAGAGAATGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCGATCGATTTTGATGACAAGAGTAGCTTTGAATATCTGTTCACGGACTACTTAATGGATTTTAAAGCGAAGCTATCTTTATCTTCAGATGAAATTGCTGATGCCAAACGTCCTCGGAAGGGAGCTGATGTGTCAGCTTCCAAACAAGAACTGTCTCAGGCACAACGTGACAATAATGATGATGGAGGTTCTGGTTCATATGCATCCATTGACACATTGCAAGCAAGTATAATCAAAAGAAGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334316" ref_strand="+" ref_description="SGN-E334316 [cTOD-21-K4]">
      <seq>ggggttgtacgaaagcatatcatccctcgtgtattgatagggatgaggaattttttcgtgccaagggtcgatggaattgtggttggcatcagtgcactatttgtcagaagaatgcttgctatttgtgctacacatgcacattttcattatgcaaggggtgcataaaagatgatgtcatcctatgtgtaagaggaaacaagggattttgcaagaactgcatgagaatggtcaagctaatagaaggcattggtaaagaagagaatgatggtccgatagattttgatgacaagagtagctttgaatatctgttcaaggactacttaatggatttaaaagcgaagctatctttatcttcagatgaaattgctgatgccaaaagtcctcggaagggagctgatgtgtcagcttccaaacaagaactgtctcaggcacaacgtgacaataatgatgatggaggttctggttcagatgcatccattgacacattggaagcaagtaaaatcaaaagaagaaagctaagaaaacgttcgaaatctatcagaaaggaagaggatgccacaactacggctgttactattagcgaaggcttctccactgctggcaccactgagtgggcatcaaaagagctgcttgaatttgttaagcatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="103757" stop="109236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104057" g_stop="104137" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104138" i_stop="107720" i_length="3583">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107721" g_stop="107905" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="266" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107906" i_stop="108552" i_length="647">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108553" g_stop="108936" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="650" r_length="384" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E334316" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104057" e_stop="104137"/>
          <exon e_start="107721" e_stop="107905"/>
          <exon e_start="108553" e_stop="108936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTTGTACGAAAGCATATCATCCCTCGTGTATTGATAGGGATGAGGAATTTTTTCGTGCCAAGGGTCGATGGAATTGTGGTGAGTGCATTAATCTACCTCTTTGTTGACTCTTTCTGACTTTATTGAGTAACATGATCAATGTAGAACCAAGTTCTCTTTTATTATATTTTTTTAATGATAGATATACACATTGATATGTCTTCCACACTTTGATTTCTAAGGCTTATCTAAAATAAGCAAAAAGATACTCTATTTTGAACTTACAAATAAATTTGTGGACAATATTTTTGCCGATAAATCTAACTTCATTCATTAATAAGATACCAAGATGGTTTAGCTACCTTGAAATAACATCCTATTCCTTTTATATTTCAAATAATCCGGAGTTGCATGATGGAGTGGTTCTCAAGCTGGTTTCCTACCTTTTCTAATCTTCTGAACATTAGCTTGGAACTGCTTCTCAGAGTCTTTAGTGGGACCTAGCTTTTGAGGAAAAATAGTCTGATGCTATGGTTGATTAGGGTGAAAAGGAGTTGGGCAAGACAAGGTAAAGCAAAAGAGGAGGGGTGATGGTCATTTTTCCATTCAACGTGGAAGGAGTAAAAATCAAAATTTTTTCTAACCCTTCAGAAATTAGATATAGTTGAAGGAGAAAATCTCCTGCAATTCCCTAGTTTGATGATAAATGTGATGTAATTGATGCATTTTGATAGTGCTTGCAATGCATGCATGCTTATTCAAATTATTTATGTTGTTCTGATACTATACAGTTTTGGGAGTTTAAAATTCTTGTCAGTAATAGCATGCAGTTTTCTTCTGATAAAAATATACTATACAGTTTTGGTACATGAAATTCACTGATCACTTGACTTTAGTTGCTTTTGTGGGTTTGAACTGTACTACAAGGTTGTCTAGGCTATTTTTAACATTATATCCATTCTATATTTATTAGTACCCTAAAGTATTTCTTATTGTTTCTTTTGACGACTTATTTTTCTTTCTTTTCCTTCCGTTCTCTTATTTTCATTTCTTCATTAAATATTGTCTTGACTGCTTTATTCTTCGGAGATTGAGGATGAGTACGATTATGCACTAGTTGTAGGGTTGACCTCTTCATGAGAGTTCAACCTTTCACTCTCCTAATTCTGTTTCCTCTTTTGTTTTGTTTTATCTGAAATTTATTGTTTTGTTTTCTTTTTGCTTTGACTTTGGGCCTGACCTATTGGTGGTTGGTCTTCTTGTGTTTGTCTATATTTTCTTAGTTTATAAAAAGGTCTTTTGCCAAGATTTGATTGAAAAAAAAACAATTGAGCACTAGTTCTTTTGTTCTGGTTTCTCACAGGAAAGCATGCATTTGTCAACTTCAAGTTAAATGTGGCTGAAGTGACTAGGCTTCATCTAAATTGAGACTATACTATGTGCTTTATCTTTCCTCCCATATTTTTCCTGCTTTGACATATGTAATTACATGACAACAATTCATCCTTAAAAAAAAGGAAAATACATGCCAATAATGTAGATAGAGCTTCTTGGCTGAGCTTCATGAAGATGTGAACCAAAGACTTACTCGTGCTTTTATCAAAACCACATCACATCTAAATGGAGGAAAAAGGACCACAATTTTTTATTTATTTATCCAAATACACTATACATCATTATTTTAATGATGTTCTACGTGCTTGCTTATCGAGAAAGGAAAAGAACATACACTTATTCCTAGCCACGTGAAAGATCCATGAAATGTGCAAAACTACAATGAACTTTGCCATTGTTTTCTCTTAAGTAGATATAGAAGCCATCCGATAAAGAGAGATTTGGGATATCATTGAACCATCAAAATCTCAGCTTGAGCCATGTCACATTTACAATAAGAGATATGGCAGTATAGCCTAAAACTCAAAATAACGATGACCTCGGTACCTAATGGAGAGTATATAGTCTCCATTTTGTTGGTACTTAATAGATTCTTGAATATGAATCATTCCGGTGTCAACCTATTAAGTGCATTCCTTTTCCTTCCTTTTGCAACCACCTACTAGCTCTTATCACCTATTAGCTCTTAATAGGTTTGAATTATTCATTATTCACGTATTGTCCCAAGTCCTAAAATTGTTAAGATCTTAACTTGAAGGTTTTGTGAATGTGACAATACCACCATTCAACTACCCCTACCATCAATTTTGTCCATAGCCTGACATCACTATCAATCACTTTTATCACCCGTCAAGGCTTGACTGCATAATCATCTCCGTGAACGACCACCACAAACCACCAAGCACCTCTGCCATCAACTACCTCCATTACCACAAACCATCTTCTCCCTAGCTTCCCCTGTATAACCACCACCACTATTAACCATCACCATCAACAATTTCCTCCACTACTAGTCACCATTAGCTACCTCTACTACAAACTTTCACCGCACTCCCACTACCACTAACCATCACCATCTGCTAAACTGCTCATCCATCATCTATTGTCATCAGCACACAACCACATCCAGCGATTGTGCACAACCACCACCGACCTCCTCGACCAGGCACCATGAACCATTATCATCAAATACCCACCAATGCCCACACTGTTGGAGTGTGGTTCATCAAATAAACATTATACAACATCATGTAAATTAATATATTGAGGGTATAAATTATATTTATTAATTTCTTCTATATAAAGATGAATTATAACCTTCTGATGTTGTGGAAAAAACAACCTTGTTCAGATTTAGATACAATATCTTAGTAATCAGATGTGCGTTTGGATCCAAATATCTTAATAAAAATATAGGGGGCCTTAGCCTTATATCCATCAGTTTAAAACACAATGTTATTAGTGCTACATTTATGAGGTAGAGCCATGAAGACAATGAGCTGAACTGTTAGTTGATTGAAAGACGGAGAAGGTTTACAGTACATATTAATGGATGTATTTCATAAAAGTGGCCACGAAAACTAATAAAGAAGTTTGTGAACGACAGAGAGGTGGTTTTGGTGTTAGACTAACAATAGAATGGAAGGAAATTAACAAAGACAAAGGTGGATTTGTCCTTTGACAAATGATTGTGCAGTACCAGTTGGGTCGTGTAGATGAATCATGAATGATATAGAGGAGGAATCGGGATACTGGTACATAGAATACATTAATCAAATCTATTTCCATTTTTACAGAAGGTGATTGTAATTATTTTAAGTTGGAATGGAGTTCTCTTGAAGTTCCACTTAACGAGTGTGGAACCAGTGTTGTCTCTATGTATAGTTTGTATGCATTTTTCCTCCTGTGGGCAGATTTCAATCAATGACTTACTTTGGGTTCTTGAGTAGAGAAATGATGACTTTTGGGGACATGTAATTTATATTGTTCACTTCTGCCATCTGATTCATAACTCCTCCCGTGTTTCCTTGAGTTGATGGGAATTTGTATTGGTTTATGCTTGTAGTATTGCATGAAAAAATTTATTAACGCACTATTAAATTGAGAATGTCTATTAAAAAAAGTTCTATCATTGAGAGCTCTAAAGTATCACCTTAAGTACTACTCCTTATTTGAATTCATGACATGAAAAAAACAAACTGTCTGCTATACCATTTAACTTTGAAATATGTTTCTTCTTCTAGTTGCCTACTGCTTTTACATTGTAGCTCCTTTTGTACTTTTCCAGGTTGGCATCAGTGCACTATTTGTCAGAAGAATGCTTGCTATTTGTGCTACACATGCACATTTTCATTATGCAAGGGGTGCATAAAAGATGATGTCATCCTATGTGTAAGAGGAAACAAGGGATTTTGCAAGAACTGCATGAGAATGGTCAAGCTAATAGAAGGCATTGGTAAAGAAGAGAATGATGTATGTCGTTCTATTATACTTGCTATCTTTTTGAGTTGTTGATTGGATTAAGCTATTCTCAACCAACGTTGTCACACATCCTATGCATATGCATAACTTTTTAACTATGATTAGCATTCAGTTAAAATATAAGTTGCTGCTAGTTAATTGGAAACATGCATAAAGAAAAATTCCAAGAAAATTAAAGAGCACATCCATAGCTGATTGGCTAAAAAGTAAGGAAGTTGGGCCGGGGAGTTACCCTATCATATCCATTATCCAATCCACTTAAGAGCATGGTGATTTTGGTTATAAACTTCTACGCTACATCAGGCAGTTATGACATATGAGAGACCTAGTTAAATACTCTAGGTGGGTTACGTTTATTGGTGAGGTAGTAGGCATATAGTGAAATGCATATTGATATCAATTTTGGGTTGTTATATTAAATTTATATCTAAATATTATCTGATGTAGTATAAATAGAATGTTTAAGTTCTCTTTTATACGGTTGCTAGCAACATGAACTATTCTGTGTTTTTATTATCTGTTCTTTTTTTCTGGTGGTAATTGATTGATGTTCCTAACTTCTTCCTCCTTAAACTGGGTAGTCTTCTTAATGTAAACCTTTAGCACAGTTCTGATCTTCTTGCTCTTTGCTGGCCCAGGGTCCGATAGATTTTGATGACAAGAGTAGCTTTGAATATCTGTTCAAGGACTACTTAATGGATTTAAAAGCGAAGCTATCTTTATCTTCAGATGAAATTGCTGATGCCAAAAGTCCTCGGAAGGGAGCTGATGTGTCAGCTTCCAAACAAGAACTGTCTCAGGCACAACGTGACAATAATGATGATGGAGGTTCTGGTTCAGATGCATCCATTGACACATTGGAAGCAAGTAAAATCAAAAGAAGAAAGCTAAGAAAACGTTCGAAATCTATCAGAAAGGAAGAGGATGCCACAACTACGGCTGTTACTATTAGCGAAGGCTTCTCCACTGCTGGCACCACTGAGTGGGCATCAAAAGAGCTGCTTGAATTTGTTAAGCATATG</genome_strand>
        <mrna_strand>GGGGTTGTACGAAAGCATATCATCCCTCGTGTATTGATAGGGATGAGGAATTTTTTCGTGCCAAGGGTCGATGGAATTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCATCAGTGCACTATTTGTCAGAAGAATGCTTGCTATTTGTGCTACACATGCACATTTTCATTATGCAAGGGGTGCATAAAAGATGATGTCATCCTATGTGTAAGAGGAAACAAGGGATTTTGCAAGAACTGCATGAGAATGGTCAAGCTAATAGAAGGCATTGGTAAAGAAGAGAATGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCGATAGATTTTGATGACAAGAGTAGCTTTGAATATCTGTTCAAGGACTACTTAATGGATTTAAAAGCGAAGCTATCTTTATCTTCAGATGAAATTGCTGATGCCAAAAGTCCTCGGAAGGGAGCTGATGTGTCAGCTTCCAAACAAGAACTGTCTCAGGCACAACGTGACAATAATGATGATGGAGGTTCTGGTTCAGATGCATCCATTGACACATTGGAAGCAAGTAAAATCAAAAGAAGAAAGCTAAGAAAACGTTCGAAATCTATCAGAAAGGAAGAGGATGCCACAACTACGGCTGTTACTATTAGCGAAGGCTTCTCCACTGCTGGCACCACTGAGTGGGCATCAAAAGAGCTGCTTGAATTTGTTAAGCATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407346" ref_strand="+" ref_description="SGN-E407346 [PPI-6-F4]">
      <seq>ggaaaataattatgtgaattctggtagtgattttggtctactagtgcctacttctgaacaggtcattgctgcacagtctggatattctttgcaaaatgctcaatcatttgcagctagtgagcaacagacagcactgattaatagccaacttggtgcacagcatgcagctctccagtcagtatctcttaatttgcagaaccctagtgtggatgtccatacatgggttgcggcagcaccttctaagggagagccaaacatttctgctctggcaccaggacagtcccagggatatggtaattggggtactacttcctcatctgtacagaatcttgctggaaatttttcaaatgcaggtgcctcagttttgcctcagcctgattattggagcacaccagctcaaggcagccaacagatcatacagcctacaactgtgcctagtgttccatggggtgctggtttgcaagagaattcgagttctgcttcagcattaagacctgagaataacactggctggggtatgatgcctggaaatccaaatgtgggctggggtggacctgtaccagcaatcatgaatgtaaattggggagcagttcaggcaatgcctncagggactgtaaatcctggttgggctccgactgggccacttcctgggaatgtgaatcctgnatgggttgcacaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="115966" stop="117243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116266" g_stop="116943" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E407346" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116266" e_stop="116943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAATAATTATGTGAATTCTGGTAGTGATTTTGG--T-CTAGTGCCTACTTCTGAACAGGTCATTGCTGCACAATCTGGATATTCTTTGCAAAATGCTCAATCATTTGCTGCTAGTGAGCAACAGACAGCACTGATTAATAGCCAACTTGGTGCACAACATGCAGCTCTCCAGTCAGTATCTCTTAATATGCAGAACCCTAGTGTGGATGTCCATACATGGGTTGCTACAGCACCTTCTAAGGGAGAGCCGAACATTTCTGCTCTGGCACCAGGGCAGTCCCAGGGATATGGTAATTGGGGTACTACATCCTCATCTGTACAGAATCTTGCTGGCAATTTTTCAAATGCAGGTGCCTCAGTTTTGCCTCAGCCTGATTATTGGAGCACACCAGCTCAAGGCAGCCAACAGATCATACAGCCTACAACTGTGCCTAGTGTTCCATGGGGTGCTGGTTTGCAAGAGAATGCGAGTTCTGCTTCAGCATTAAGACCTGAGAATAACACTGGCTGGGGTATGATGCCTGGAAATCCAAATGTGGGCTGGGGAGGACCCGTACCAGCAGTCATGAATGTAAATTGGGGAGCAGTTCAGGCAATGCCTCCGGGGGCTGTAAATCCTGGTTGGGCTCCGACTGGGCCACTCCCTGGGAATCTGAATCCTGGATGGGTTGCACAATC</genome_strand>
        <mrna_strand>GGAAAATAATTATGTGAATTCTGGTAGTGATTTTGGTCTACTAGTGCCTACTTCTGAACAGGTCATTGCTGCACAGTCTGGATATTCTTTGCAAAATGCTCAATCATTTGCAGCTAGTGAGCAACAGACAGCACTGATTAATAGCCAACTTGGTGCACAGCATGCAGCTCTCCAGTCAGTATCTCTTAATTTGCAGAACCCTAGTGTGGATGTCCATACATGGGTTGCGGCAGCACCTTCTAAGGGAGAGCCAAACATTTCTGCTCTGGCACCAGGACAGTCCCAGGGATATGGTAATTGGGGTACTACTTCCTCATCTGTACAGAATCTTGCTGGAAATTTTTCAAATGCAGGTGCCTCAGTTTTGCCTCAGCCTGATTATTGGAGCACACCAGCTCAAGGCAGCCAACAGATCATACAGCCTACAACTGTGCCTAGTGTTCCATGGGGTGCTGGTTTGCAAGAGAATTCGAGTTCTGCTTCAGCATTAAGACCTGAGAATAACACTGGCTGGGGTATGATGCCTGGAAATCCAAATGTGGGCTGGGGTGGACCTGTACCAGCAATCATGAATGTAAATTGGGGAGCAGTTCAGGCAATGCCTNCAGGGACTGTAAATCCTGGTTGGGCTCCGACTGGGCCACTTCCTGGGAATGTGAATCCTGNATGGGTTGCACAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421152" ref_strand="+" ref_description="SGN-E421152 [STM-32-I20]">
      <seq>ggaaaataattatgtgaattctggtagtgattttggtctactagtgcctacttctgaacaggtcattgctgcacagtctggatattctttgcaaaatgctcaatcatttgcagctagtgagcaacagacagcactgattaatagccaacttggtgcacagcatgcagctctccagtcagtatctcttaatttgcagaaccctagtgtggatgtccatacatgggttgcggcagcaccttctaagggagagccaaacatttctgctctggcaccaggacagtcccagggatatggtaattggggtactacttcctcatctgtacagaatcttgctggaaatttttcaaatgcaggtgcctcagttttgcctcagcctgattattggagcacaccagctcaaggcagccaacagatcatacagcctacaactgtgcctagtgttccatggggtgctggtttgcaagagaattcgagttctgcttcagcattaagacctgagaataacactggctggggtatgatgcctggaaatccaaatgtgggctggggtggacctgtaccagcaatcatgaatgtaaattggggagcagttcaggcaatgcctncagggactgtaaatcctggttgggctccgactggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="115966" stop="117202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116266" g_stop="116902" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E421152" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116266" e_stop="116902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAATAATTATGTGAATTCTGGTAGTGATTTTGG--T-CTAGTGCCTACTTCTGAACAGGTCATTGCTGCACAATCTGGATATTCTTTGCAAAATGCTCAATCATTTGCTGCTAGTGAGCAACAGACAGCACTGATTAATAGCCAACTTGGTGCACAACATGCAGCTCTCCAGTCAGTATCTCTTAATATGCAGAACCCTAGTGTGGATGTCCATACATGGGTTGCTACAGCACCTTCTAAGGGAGAGCCGAACATTTCTGCTCTGGCACCAGGGCAGTCCCAGGGATATGGTAATTGGGGTACTACATCCTCATCTGTACAGAATCTTGCTGGCAATTTTTCAAATGCAGGTGCCTCAGTTTTGCCTCAGCCTGATTATTGGAGCACACCAGCTCAAGGCAGCCAACAGATCATACAGCCTACAACTGTGCCTAGTGTTCCATGGGGTGCTGGTTTGCAAGAGAATGCGAGTTCTGCTTCAGCATTAAGACCTGAGAATAACACTGGCTGGGGTATGATGCCTGGAAATCCAAATGTGGGCTGGGGAGGACCCGTACCAGCAGTCATGAATGTAAATTGGGGAGCAGTTCAGGCAATGCCTCCGGGGGCTGTAAATCCTGGTTGGGCTCCGACTGGG</genome_strand>
        <mrna_strand>GGAAAATAATTATGTGAATTCTGGTAGTGATTTTGGTCTACTAGTGCCTACTTCTGAACAGGTCATTGCTGCACAGTCTGGATATTCTTTGCAAAATGCTCAATCATTTGCAGCTAGTGAGCAACAGACAGCACTGATTAATAGCCAACTTGGTGCACAGCATGCAGCTCTCCAGTCAGTATCTCTTAATTTGCAGAACCCTAGTGTGGATGTCCATACATGGGTTGCGGCAGCACCTTCTAAGGGAGAGCCAAACATTTCTGCTCTGGCACCAGGACAGTCCCAGGGATATGGTAATTGGGGTACTACTTCCTCATCTGTACAGAATCTTGCTGGAAATTTTTCAAATGCAGGTGCCTCAGTTTTGCCTCAGCCTGATTATTGGAGCACACCAGCTCAAGGCAGCCAACAGATCATACAGCCTACAACTGTGCCTAGTGTTCCATGGGGTGCTGGTTTGCAAGAGAATTCGAGTTCTGCTTCAGCATTAAGACCTGAGAATAACACTGGCTGGGGTATGATGCCTGGAAATCCAAATGTGGGCTGGGGTGGACCTGTACCAGCAATCATGAATGTAAATTGGGGAGCAGTTCAGGCAATGCCTNCAGGGACTGTAAATCCTGGTTGGGCTCCGACTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692637" ref_strand="+" ref_description="SGN-E692637 [LH_Ea09D19]">
      <seq>ttcttaatatgcagaaccctagtgtggatgtccatacccgggttgctacagcaccttctaagggagagccgaacatttctgctctggcaccagggcagtcccagggatatggtaattggggtactacatcctcatctgtacagaatcttgctggaaatttttcaaatgcaggtgcctcagttttgcctcagcctgattattggagcacaccagctcaaggcagccaacagatcatacagcctacaactgtgcctagtgttccatggggtgctggtttgcaagagaatgcgagttctgcttcagcattaagacctgagaataatactggctggggtatgatgcctggaaatccaaatgtgggctggggtggacctgtaccagcagtcatgaatgtaaattggggagcagttcaggcaatgcctccgggggctgtaaatcctggttgggctccgcctgggccacttactgggaatctgaatcctggatgggttgcacaatctgggaatgctggtattcagggcttgacacctgggaatgccaatccaggttgggttgctccaacagggagcatgggatcaactattcaagggcctacatctggtaatgggtggggtatgggaagtggaaatcctggagcacttgtccaaagaccgccacctcaaggagattcaaatcaaggtaggggtggagctaatgggaatcggggcacaagaaataatgatcagcatcaagatgggagattctctggtcagagggacaagggtaggaactgggataggcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="116146" stop="117528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116445" g_stop="117228" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="784" r_length="784" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E692637" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116445" e_stop="117228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTAATATGCAGAACCCTAGTGTGGATGTCCATACATGGGTTGCTACAGCACCTTCTAAGGGAGAGCCGAACATTTCTGCTCTGGCACCAGGGCAGTCCCAGGGATATGGTAATTGGGGTACTACATCCTCATCTGTACAGAATCTTGCTGGCAATTTTTCAAATGCAGGTGCCTCAGTTTTGCCTCAGCCTGATTATTGGAGCACACCAGCTCAAGGCAGCCAACAGATCATACAGCCTACAACTGTGCCTAGTGTTCCATGGGGTGCTGGTTTGCAAGAGAATGCGAGTTCTGCTTCAGCATTAAGACCTGAGAATAACACTGGCTGGGGTATGATGCCTGGAAATCCAAATGTGGGCTGGGGAGGACCCGTACCAGCAGTCATGAATGTAAATTGGGGAGCAGTTCAGGCAATGCCTCCGGGGGCTGTAAATCCTGGTTGGGCTCCGACTGGGCCACTCCCTGGGAATCTGAATCCTGGATGGGTTGCACAATCTGGGAATGCTGGTGTTCAGGGCTTGACACCTGGGAATGCCAATCCAGGTTGGGTTGCTCCAACAGGGAGCATGGGTTCAACTATTCAAGGGCCTACATCTGGTAATGGGTGGGGTATGGGAAGTGGAAATCCTGGAGCACTTGTCCAAAGACCGCTACCTCATGGAGATTCAAATCAAGGTAGGGGTGGAGCTAATGGGAATCGGGGCACAAGAAATAATGATCAGCATCAAGATGGGAGATTCTCTGGTCAGAGGGACAAGGGTAGGAACTGGGATAGGCAATC</genome_strand>
        <mrna_strand>TTCTTAATATGCAGAACCCTAGTGTGGATGTCCATACCCGGGTTGCTACAGCACCTTCTAAGGGAGAGCCGAACATTTCTGCTCTGGCACCAGGGCAGTCCCAGGGATATGGTAATTGGGGTACTACATCCTCATCTGTACAGAATCTTGCTGGAAATTTTTCAAATGCAGGTGCCTCAGTTTTGCCTCAGCCTGATTATTGGAGCACACCAGCTCAAGGCAGCCAACAGATCATACAGCCTACAACTGTGCCTAGTGTTCCATGGGGTGCTGGTTTGCAAGAGAATGCGAGTTCTGCTTCAGCATTAAGACCTGAGAATAATACTGGCTGGGGTATGATGCCTGGAAATCCAAATGTGGGCTGGGGTGGACCTGTACCAGCAGTCATGAATGTAAATTGGGGAGCAGTTCAGGCAATGCCTCCGGGGGCTGTAAATCCTGGTTGGGCTCCGCCTGGGCCACTTACTGGGAATCTGAATCCTGGATGGGTTGCACAATCTGGGAATGCTGGTATTCAGGGCTTGACACCTGGGAATGCCAATCCAGGTTGGGTTGCTCCAACAGGGAGCATGGGATCAACTATTCAAGGGCCTACATCTGGTAATGGGTGGGGTATGGGAAGTGGAAATCCTGGAGCACTTGTCCAAAGACCGCCACCTCAAGGAGATTCAAATCAAGGTAGGGGTGGAGCTAATGGGAATCGGGGCACAAGAAATAATGATCAGCATCAAGATGGGAGATTCTCTGGTCAGAGGGACAAGGGTAGGAACTGGGATAGGCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717039" ref_strand="+" ref_description="SGN-E717039 [FB18DA09]">
      <seq>ggggtatgatgcctggaaatccaaatgtgggctggggaggacccgtaccagcagtcatgaatgtaaattggggagcagttcaggcaatgcctccgggggctgtaaatcctggttgggctccgactgggccactccctgggaatctgaatcctggatgggttgcacaatctgggaatgctggtgttcagggcttgacacctgggaatgccaatccaggttgggttgctccaacagggagcatgggttcaactattcaagggcctacatctggtaatgggtggggtatgggaagtggaaatcctggagcacttgtccaaagaccgccacctcatggagattcaaatcaaggtaggggtggagctaatgggaatcggggcacaagaaataatgatcagcatcaagatgggagattctctggtcagagggacaagggtaggaactgggataggcaatcgtcttttgggagtagagggccgtctagaggtggcttcaaaaagaataatgtgccctgcccatataatacaaacaatcgatgcataaagggtgataaatgcaattatcttcatggctaatcaggaggaaacagagtagtagtaggagagtaaagtgattttgtacagtgatttcgtctcagttgtcttttagtatataggtctgttctataattgtaaacttgtgcagattagttgctccccgccctcttctgatctgatgcagtttttgcagtagctaggttcatcctgcctatgttatcagcttctaataaagcagacagcgggcattatggccaaatatttagcctagtttcatatttatggattttgctgttctagacttggaatcatggcatttatgaaatgtgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="116475" stop="117938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116775" g_stop="117638" g_length="864"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="864" r_length="864" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E717039" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116775" e_stop="117638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTATGATGCCTGGAAATCCAAATGTGGGCTGGGGAGGACCCGTACCAGCAGTCATGAATGTAAATTGGGGAGCAGTTCAGGCAATGCCTCCGGGGGCTGTAAATCCTGGTTGGGCTCCGACTGGGCCACTCCCTGGGAATCTGAATCCTGGATGGGTTGCACAATCTGGGAATGCTGGTGTTCAGGGCTTGACACCTGGGAATGCCAATCCAGGTTGGGTTGCTCCAACAGGGAGCATGGGTTCAACTATTCAAGGGCCTACATCTGGTAATGGGTGGGGTATGGGAAGTGGAAATCCTGGAGCACTTGTCCAAAGACCGCTACCTCATGGAGATTCAAATCAAGGTAGGGGTGGAGCTAATGGGAATCGGGGCACAAGAAATAATGATCAGCATCAAGATGGGAGATTCTCTGGTCAGAGGGACAAGGGTAGGAACTGGGATAGGCAATCGTCTTTTGGGAGTAGAGGGCCGTCTAGAGGTGGCTTCAAAAAGAATAATGTGCCCTGCCCATATAATACAAACAATCGATGCATAAAGGGTGATAAATGCAATTATCTTCATGGCTAATCAGGAGGAAACAGAGTAGTAGTAGGAGAGTAAAGTGATTTTGTACAGTGATTTCGTCTCAGTTGTCTTTTAGTATATAGGTCTGTTCTATAATTGTAAACTTGTGCAGATTAGTTGCTCCCCGCCCTCTTCTGATCTGATGCAGTTTTTGCAGTAGCTAGGTTCATCCTGCCTATGTTATCAGCTTCTAATAAAGCAGACAGCGGGCATTATGGCCAAATATTTAGCCTAGTTTCATATTTATGGATTTTGCTGTTCTAGACTTGGAATCATGGCATTTATGAACTGTGTC</genome_strand>
        <mrna_strand>GGGGTATGATGCCTGGAAATCCAAATGTGGGCTGGGGAGGACCCGTACCAGCAGTCATGAATGTAAATTGGGGAGCAGTTCAGGCAATGCCTCCGGGGGCTGTAAATCCTGGTTGGGCTCCGACTGGGCCACTCCCTGGGAATCTGAATCCTGGATGGGTTGCACAATCTGGGAATGCTGGTGTTCAGGGCTTGACACCTGGGAATGCCAATCCAGGTTGGGTTGCTCCAACAGGGAGCATGGGTTCAACTATTCAAGGGCCTACATCTGGTAATGGGTGGGGTATGGGAAGTGGAAATCCTGGAGCACTTGTCCAAAGACCGCCACCTCATGGAGATTCAAATCAAGGTAGGGGTGGAGCTAATGGGAATCGGGGCACAAGAAATAATGATCAGCATCAAGATGGGAGATTCTCTGGTCAGAGGGACAAGGGTAGGAACTGGGATAGGCAATCGTCTTTTGGGAGTAGAGGGCCGTCTAGAGGTGGCTTCAAAAAGAATAATGTGCCCTGCCCATATAATACAAACAATCGATGCATAAAGGGTGATAAATGCAATTATCTTCATGGCTAATCAGGAGGAAACAGAGTAGTAGTAGGAGAGTAAAGTGATTTTGTACAGTGATTTCGTCTCAGTTGTCTTTTAGTATATAGGTCTGTTCTATAATTGTAAACTTGTGCAGATTAGTTGCTCCCCGCCCTCTTCTGATCTGATGCAGTTTTTGCAGTAGCTAGGTTCATCCTGCCTATGTTATCAGCTTCTAATAAAGCAGACAGCGGGCATTATGGCCAAATATTTAGCCTAGTTTCATATTTATGGATTTTGCTGTTCTAGACTTGGAATCATGGCATTTATGAAATGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715574" ref_strand="+" ref_description="SGN-E715574 [FB14CG02]">
      <seq>ggtgtatgatgcctggaaatccaaatgtgggctggggaggacccgtaccagcagtcatgaatgtaaattggggagcagttcaggcaatgcctccgggggctgtaaatcctggttgggctccgactgggccactccctgggaatctgaatcctggatgggttgcacaatctgggaatgctggtgttcagggcttgacacctgggaatgccaatccaggttgggttgctccaacagggagcatgggttcaactattcaagggcctacatctggtaatgggtggggtatgggaagtggaaatcctggagcacttgtccaaagaccgccacctcatggagattcaaatcaaggtaggggtggagctaatgggaatcggggcacaagaaataatgatcagcatcaagatgggagattctctggtcagagggacaagggtaggaactgggataggcaatcgtcttttgggagtagagggccgtctagaggtggcttcaaaaagaataatgtgccctgcccatataatacaaacaatcgatgcataaagggtgataaatgcaattatcttcatggctaatcaggaggaaacagagtagtagtaggagagtaaagtgattttgtacagtgatttcgtctcagttgtcttttagtatataggtctgttctataattgtaaacttgtgcagattagttgctccccgccctcttctgatctgatgcagtttttgcagtagctaggttcatcctgcctatgttatcagcttctaataaagcagacagcgggcattatgggccaatatttaccctaatttcatatttatggattttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="116476" stop="117900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116775" g_stop="117600" g_length="826"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="826" r_length="826" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E715574" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116775" e_stop="117600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTATGATGCCTGGAAATCCAAATGTGGGCTGGGGAGGACCCGTACCAGCAGTCATGAATGTAAATTGGGGAGCAGTTCAGGCAATGCCTCCGGGGGCTGTAAATCCTGGTTGGGCTCCGACTGGGCCACTCCCTGGGAATCTGAATCCTGGATGGGTTGCACAATCTGGGAATGCTGGTGTTCAGGGCTTGACACCTGGGAATGCCAATCCAGGTTGGGTTGCTCCAACAGGGAGCATGGGTTCAACTATTCAAGGGCCTACATCTGGTAATGGGTGGGGTATGGGAAGTGGAAATCCTGGAGCACTTGTCCAAAGACCGCTACCTCATGGAGATTCAAATCAAGGTAGGGGTGGAGCTAATGGGAATCGGGGCACAAGAAATAATGATCAGCATCAAGATGGGAGATTCTCTGGTCAGAGGGACAAGGGTAGGAACTGGGATAGGCAATCGTCTTTTGGGAGTAGAGGGCCGTCTAGAGGTGGCTTCAAAAAGAATAATGTGCCCTGCCCATATAATACAAACAATCGATGCATAAAGGGTGATAAATGCAATTATCTTCATGGCTAATCAGGAGGAAACAGAGTAGTAGTAGGAGAGTAAAGTGATTTTGTACAGTGATTTCGTCTCAGTTGTCTTTTAGTATATAGGTCTGTTCTATAATTGTAAACTTGTGCAGATTAGTTGCTCCCCGCCCTCTTCTGATCTGATGCAGTTTTTGCAGTAGCTAGGTTCATCCTGCCTATGTTATCAGCTTCTAATAAAGCAGACAGCGGGCATTATGGCCAAATATTTAGCCTAGTTTCATATTTATGGATTTTGCT</genome_strand>
        <mrna_strand>GGTGTATGATGCCTGGAAATCCAAATGTGGGCTGGGGAGGACCCGTACCAGCAGTCATGAATGTAAATTGGGGAGCAGTTCAGGCAATGCCTCCGGGGGCTGTAAATCCTGGTTGGGCTCCGACTGGGCCACTCCCTGGGAATCTGAATCCTGGATGGGTTGCACAATCTGGGAATGCTGGTGTTCAGGGCTTGACACCTGGGAATGCCAATCCAGGTTGGGTTGCTCCAACAGGGAGCATGGGTTCAACTATTCAAGGGCCTACATCTGGTAATGGGTGGGGTATGGGAAGTGGAAATCCTGGAGCACTTGTCCAAAGACCGCCACCTCATGGAGATTCAAATCAAGGTAGGGGTGGAGCTAATGGGAATCGGGGCACAAGAAATAATGATCAGCATCAAGATGGGAGATTCTCTGGTCAGAGGGACAAGGGTAGGAACTGGGATAGGCAATCGTCTTTTGGGAGTAGAGGGCCGTCTAGAGGTGGCTTCAAAAAGAATAATGTGCCCTGCCCATATAATACAAACAATCGATGCATAAAGGGTGATAAATGCAATTATCTTCATGGCTAATCAGGAGGAAACAGAGTAGTAGTAGGAGAGTAAAGTGATTTTGTACAGTGATTTCGTCTCAGTTGTCTTTTAGTATATAGGTCTGTTCTATAATTGTAAACTTGTGCAGATTAGTTGCTCCCCGCCCTCTTCTGATCTGATGCAGTTTTTGCAGTAGCTAGGTTCATCCTGCCTATGTTATCAGCTTCTAATAAAGCAGACAGCGGGCATTATGGGCCAATATTTACCCTAATTTCATATTTATGGATTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E696477" ref_strand="+" ref_description="SGN-E696477 [LH_Ea09D19](-)">
      <seq>cagcagtcatgaatgtaaattggggagcagttcaggcaatgcctccgggggctgtaaatcctggttgggctccgcctgggccacttactgggaatttgaatcctggatgggttgcacaatctgggaatgctggtattcagggcttgacacctgggaatgccaatccaggttgggttgctccaacagggagcatgggatcaattattcaagggcctacatttggtaatgggtggggtatgggaagtggaaatcctggagcacttgtccaaagaccgccccctcaaggagattcaaatcaaggtaggggtggagctaatgggaatcggggcacaagaaataatgatcagcatcaagatgggagattttttggtcagagggacaagggtaggaactgggataggcaattgttttttgggagtagagggccgtttagaggtggcttcaaaaagaataatgtgccctgcccatataatacaaacaatcgatgcataaagggtgataaatgcaattattttcatggttaatcaggaggaaacagagtagtagtaggagagtaaagtgattttgtacagggatttcgtttcagttgtcttttagtatataggtcattttggtgttttataattgtaaacttgtgcagattagttgctccccgcccttttctgatttgatgcagtttttgcagtagctaggttcatcctgcctaggttatcagcttttaataaagcagacagcgggcattaaggggaaataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="116523" stop="117868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116823" g_stop="117567" g_length="745"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="752" r_length="752" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="753" polyA_stop="784"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E696477" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116823" e_stop="117567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAGTCATGAATGTAAATTGGGGAGCAGTTCAGGCAATGCCTCCGGGGGCTGTAAATCCTGGTTGGGCTCCGACTGGGCCACTCCCTGGGAATCTGAATCCTGGATGGGTTGCACAATCTGGGAATGCTGGTGTTCAGGGCTTGACACCTGGGAATGCCAATCCAGGTTGGGTTGCTCCAACAGGGAGCATGGGTTCAACTATTCAAGGGCCTACATCTGGTAATGGGTGGGGTATGGGAAGTGGAAATCCTGGAGCACTTGTCCAAAGACCGCTACCTCATGGAGATTCAAATCAAGGTAGGGGTGGAGCTAATGGGAATCGGGGCACAAGAAATAATGATCAGCATCAAGATGGGAGATTCTCTGGTCAGAGGGACAAGGGTAGGAACTGGGATAGGCAATCGTCTTTTGGGAGTAGAGGGCCGTCTAGAGGTGGCTTCAAAAAGAATAATGTGCCCTGCCCATATAATACAAACAATCGATGCATAAAGGGTGATAAATGCAATTATCTTCATGGCTAATCAGGAGGAAACAGAGTAGTAGTAGGAGAGTAAAGTGATTTTGTACAGTGATTTCGTCTCAGTTGTCTTTTAGTATATAGGTC-------TGTTCTATAATTGTAAACTTGTGCAGATTAGTTGCTCCCCGCCCTCTTCTGATCTGATGCAGTTTTTGCAGTAGCTAGGTTCATCCTGCCTATGTTATCAGCTTCTAATAAAGCAGACAGCGGGCATTATGGCCAAAT</genome_strand>
        <mrna_strand>CAGCAGTCATGAATGTAAATTGGGGAGCAGTTCAGGCAATGCCTCCGGGGGCTGTAAATCCTGGTTGGGCTCCGCCTGGGCCACTTACTGGGAATTTGAATCCTGGATGGGTTGCACAATCTGGGAATGCTGGTATTCAGGGCTTGACACCTGGGAATGCCAATCCAGGTTGGGTTGCTCCAACAGGGAGCATGGGATCAATTATTCAAGGGCCTACATTTGGTAATGGGTGGGGTATGGGAAGTGGAAATCCTGGAGCACTTGTCCAAAGACCGCCCCCTCAAGGAGATTCAAATCAAGGTAGGGGTGGAGCTAATGGGAATCGGGGCACAAGAAATAATGATCAGCATCAAGATGGGAGATTTTTTGGTCAGAGGGACAAGGGTAGGAACTGGGATAGGCAATTGTTTTTTGGGAGTAGAGGGCCGTTTAGAGGTGGCTTCAAAAAGAATAATGTGCCCTGCCCATATAATACAAACAATCGATGCATAAAGGGTGATAAATGCAATTATTTTCATGGTTAATCAGGAGGAAACAGAGTAGTAGTAGGAGAGTAAAGTGATTTTGTACAGGGATTTCGTTTCAGTTGTCTTTTAGTATATAGGTCATTTTGGTGTTTTATAATTGTAAACTTGTGCAGATTAGTTGCTCCCCGCCCTTTTCTGATTTGATGCAGTTTTTGCAGTAGCTAGGTTCATCCTGCCTAGGTTATCAGCTTTTAATAAAGCAGACAGCGGGCATTAAGGGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421153" ref_strand="+" ref_description="SGN-E421153 [STM-32-I20]">
      <seq>ccctttttttagccaaaaaccacctcgtcccataactctgtgagacatttcataaattccatgattcaagtctagaacagcaaaatccataaatatgaaactaggcgaatatatggccacaatgcccgctgtctgcgttattagaagctgataagataggccgggtaaatctagctactgggaaaactgcatcagatcagaagagggcgaggagctactaatctgcacaagtttacaattatagaacaccaaaataacctatatactaaagacaactgagacgaaatcactgtacaaaatcactttactcctactactactctgtttcctcctgattagccatgaagataattgcatctatcaccttttatgcatcgattgtttgtattatatggacacgggacattattctttttgaagccacctctagacggccctctattcccaaaagacgattgcctatcccagttcctacccttgtccctctgaccagagaatctcccatcttgatgctgatcattatttcttgtgcctcgattcccattaggtccacccctaccttgatttgaatctccttgaggtggtggtctttggacaagtgctccaggatttccagctcccataccccacccattaccagatgtaggcccttgaatagttgatcccatgctccctgttggagcaacccaacctggattggcattcccaggcgtcaagccctgaacaccagcattcccagatttgtgcacccatccaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="-" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="117944" stop="116622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117645" g_stop="116922" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="760" r_length="726" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="-" ref_id="SGN-E421153" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117645" e_stop="116922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTGTGACACAGTTCATAAATGCCATGATTCCAAGTCTAGAACAGCAAAATCCATAAATATGAAACTAGGCTAAATATTTGGCCATAATGCCCGCTGTCTGCTTTATTAGAAGCTGATAACATAGGCAGGATGAACCTAGCTACTGCAAAAACTGCATCAGATCAGAAGAGGGCGGGGAGCAACTAATCTGCACAAGTTTACAATTATAG-A-A-C---A-GACCTATATACTAAAAGACAACTGAGACGAAATCACTGTACAAAATCACTTTACTCTCCTACTACTACTCTGTTTCCTCCTGATTAGCCATGAAGATAATTGCATTTATCACCCTTTATGCATCGATTGTTTGTATTATATGGGCAGGGCACATTATTCTTTTTGAAGCCACCTCTAGACGGCCCTCTACTCCCAAAAGACGATTGCCTATCCCAGTTCCTACCCTTGTCCCTCTGACCAGAGAATCTCCCATCTTGATGCTGATCATTATTTCTTGTGCCCCGATTCCCATTAGCTCCACCCCTACCTTGATTTGAATCTCCATGAGGTAGCGGTCTTTGGACAAGTGCTCCAGGATTTCCACTTCCCATACCCCACCCATTACCAGATGTAGGCCCTTGAATAGTTGAACCCATGCTCCCTGTTGGAGCAACCCAACCTGGATTGGCATTCCCAGGTGTCAAGCCCTGAACACCAGCATTCCCAGA-TTGTGCAACCCATCCAGGAT</genome_strand>
        <mrna_strand>ACTCTGTGAGACATTTCATAAATTCCATGATT-CAAGTCTAGAACAGCAAAATCCATAAATATGAAACTAGGCGAA-TATATGGCCACAATGCCCGCTGTCTGCGTTATTAGAAGCTGATAAGATAGGCCGGGTAAATCTAGCTACTGGGAAAACTGCATCAGATCAGAAGAGGGCGAGGAGCTACTAATCTGCACAAGTTTACAATTATAGAACACCAAAATAACCTATATACT-AAAGACAACTGAGACGAAATCACTGTACAAAATCACTTTA--CTCCTACTACTACTCTGTTTCCTCCTGATTAGCCATGAAGATAATTGCATCTATCACCTTTTATGCATCGATTGTTTGTATTATATGGACACGGGACATTATTCTTTTTGAAGCCACCTCTAGACGGCCCTCTATTCCCAAAAGACGATTGCCTATCCCAGTTCCTACCCTTGTCCCTCTGACCAGAGAATCTCCCATCTTGATGCTGATCATTATTTCTTGTGCCTCGATTCCCATTAGGTCCACCCCTACCTTGATTTGAATCTCCTTGAGGTGGTGGTCTTTGGACAAGTGCTCCAGGATTTCCAGCTCCCATACCCCACCCATTACCAGATGTAGGCCCTTGAATAGTTGATCCCATGCTCCCTGTTGGAGCAACCCAACCTGGATTGGCATTCCCAGGCGTCAAGCCCTGAACACCAGCATTCCCAGATTTGTGC-ACCCATCCAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282599" ref_strand="+" ref_description="SGN-E282599 [cLER-15-E21]">
      <seq>ggaaatcctggagcacttgtccaaagaccgctacctcatggagattcaaatcaaggtaggggtggagctaatgggaatcggggcacaagaaataatgatcagcatcaagatgggagattctctggtcagagggacaagggtaggaactgggataggcaatcgtcttttgggagtagagggccgtctagaggtggcttcaaaaagaataatgtgccctgcccatataatacaaacaatcgatgcataaagggtgataaatgcaattatcttcatggctaatcaggaggaaacagagtagtagtaggagagtaaagtgattttgtacagtgatttcgtctcagttgtcttttagtatataggtctgttctataattgtaaacttgtgcagattagttgctccccgccctcttctgatctgatgcagtttttgcagtagctaggttcatcctgcctatgttatcagcttctaataaagcagacagcgggcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="116768" stop="117858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117068" g_stop="117558" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E282599" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117068" e_stop="117558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATCCTGGAGCACTTGTCCAAAGACCGCTACCTCATGGAGATTCAAATCAAGGTAGGGGTGGAGCTAATGGGAATCGGGGCACAAGAAATAATGATCAGCATCAAGATGGGAGATTCTCTGGTCAGAGGGACAAGGGTAGGAACTGGGATAGGCAATCGTCTTTTGGGAGTAGAGGGCCGTCTAGAGGTGGCTTCAAAAAGAATAATGTGCCCTGCCCATATAATACAAACAATCGATGCATAAAGGGTGATAAATGCAATTATCTTCATGGCTAATCAGGAGGAAACAGAGTAGTAGTAGGAGAGTAAAGTGATTTTGTACAGTGATTTCGTCTCAGTTGTCTTTTAGTATATAGGTCTGTTCTATAATTGTAAACTTGTGCAGATTAGTTGCTCCCCGCCCTCTTCTGATCTGATGCAGTTTTTGCAGTAGCTAGGTTCATCCTGCCTATGTTATCAGCTTCTAATAAAGCAGACAGCGGGCATTA</genome_strand>
        <mrna_strand>GGAAATCCTGGAGCACTTGTCCAAAGACCGCTACCTCATGGAGATTCAAATCAAGGTAGGGGTGGAGCTAATGGGAATCGGGGCACAAGAAATAATGATCAGCATCAAGATGGGAGATTCTCTGGTCAGAGGGACAAGGGTAGGAACTGGGATAGGCAATCGTCTTTTGGGAGTAGAGGGCCGTCTAGAGGTGGCTTCAAAAAGAATAATGTGCCCTGCCCATATAATACAAACAATCGATGCATAAAGGGTGATAAATGCAATTATCTTCATGGCTAATCAGGAGGAAACAGAGTAGTAGTAGGAGAGTAAAGTGATTTTGTACAGTGATTTCGTCTCAGTTGTCTTTTAGTATATAGGTCTGTTCTATAATTGTAAACTTGTGCAGATTAGTTGCTCCCCGCCCTCTTCTGATCTGATGCAGTTTTTGCAGTAGCTAGGTTCATCCTGCCTATGTTATCAGCTTCTAATAAAGCAGACAGCGGGCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222156" ref_strand="+" ref_description="SGN-E222156 [cLEL-16-A21](-)">
      <seq>agctaatgggaatcggggcacaagaaataatgatcagcatcaagatgggagattctctggtcagagggacaagggtaggaactgggataggcaatcgtcttttgggagtagagggccgtctagaggtggcttcaaaaagaataatgtgccctgcccatataatacaaacaatcgatgcataaagggtgataaatgcaattatcttcatggctaatcaggaggaaacagagtagtagtaggagagtaaagtgattttgtacagtgatttcgtctcagttgtcttttagtatataggtctgttctataattgtaaacttgtgcagattagttgctccccgccctcttctgatctgatgcagtttttgcagtagctaggttcatcctgcctatgttatcagcttctaataaagcagacagcgggcattatggcccaatatttagcctagtttcccacctatggattttgctgttctagaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="116833" stop="117908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117133" g_stop="117608" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="477" polyA_stop="493"/>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E222156" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117133" e_stop="117608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTAATGGGAATCGGGGCACAAGAAATAATGATCAGCATCAAGATGGGAGATTCTCTGGTCAGAGGGACAAGGGTAGGAACTGGGATAGGCAATCGTCTTTTGGGAGTAGAGGGCCGTCTAGAGGTGGCTTCAAAAAGAATAATGTGCCCTGCCCATATAATACAAACAATCGATGCATAAAGGGTGATAAATGCAATTATCTTCATGGCTAATCAGGAGGAAACAGAGTAGTAGTAGGAGAGTAAAGTGATTTTGTACAGTGATTTCGTCTCAGTTGTCTTTTAGTATATAGGTCTGTTCTATAATTGTAAACTTGTGCAGATTAGTTGCTCCCCGCCCTCTTCTGATCTGATGCAGTTTTTGCAGTAGCTAGGTTCATCCTGCCTATGTTATCAGCTTCTAATAAAGCAGACAGCGGGCATTATGGCCAAATATTTAGCCTAGTTTCATATTTATGGATTTTGCTGTTCTAGA</genome_strand>
        <mrna_strand>AGCTAATGGGAATCGGGGCACAAGAAATAATGATCAGCATCAAGATGGGAGATTCTCTGGTCAGAGGGACAAGGGTAGGAACTGGGATAGGCAATCGTCTTTTGGGAGTAGAGGGCCGTCTAGAGGTGGCTTCAAAAAGAATAATGTGCCCTGCCCATATAATACAAACAATCGATGCATAAAGGGTGATAAATGCAATTATCTTCATGGCTAATCAGGAGGAAACAGAGTAGTAGTAGGAGAGTAAAGTGATTTTGTACAGTGATTTCGTCTCAGTTGTCTTTTAGTATATAGGTCTGTTCTATAATTGTAAACTTGTGCAGATTAGTTGCTCCCCGCCCTCTTCTGATCTGATGCAGTTTTTGCAGTAGCTAGGTTCATCCTGCCTATGTTATCAGCTTCTAATAAAGCAGACAGCGGGCATTATGGCCCAATATTTAGCCTAGTTTCCCACCTATGGATTTTGCTGTTCTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474401" ref_strand="+" ref_description="SGN-E474401 [cSTB-36-K16]">
      <seq>aaaaaacataagctttgtttaactgtttctctgggaactgcacttgttgatatgtatgccaaatgtggtaacatcgaaaaaacgcttcaggtttttcatgagatgcccatcagaaactcattgacttggacagctgcaattggtgccttggcgcatcatggaaatggacatgatgctctatcatattttttgaagatggttgacagtggcctgagaccagatgatgtcacatttcttggggtcttgtcagcttgttgtcatggaggtttggttgaagaagggcgaaagttttttgctcaaatgagcaaaaagttcaaaattccccccaaatctaaacattactcttgcatagtagaccttttgggcagggcagggctcctggaagaagcttatgagctagtccatggggtgccaaatgaggctgatgcttcagtatggggagcattgttttttgcttgtcgagttcataggaacattgagatgggggaaaaggcagctctgaaacttcttgaattggatcctggtgatagtggaacttatgtcttacttgctaacatgtatgttgaagcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="+" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="122781" stop="123952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123081" g_stop="123652" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="+" ref_id="SGN-E474401" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123081" e_stop="123652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACATAAGCTTTGTTCAACTGTTTCTCTGGGAACAGCACTTGTTGATATGTATGCCAAATGCGGCAACATTGAAAAAATGCTTCAGGTTTTTCACGCGATGCCCATCAGAAACTCATTGACTTGGACAGCTGCAATTGGCGCCTTAGCGCATCATGGAAATGGGCATGATGCTCTATCATATTTTTTAAAGATGGTTGACAGTGGTCTGAGACCAGATGATGTCACATTTCTTGGGGTCTTGTCAGCTTGTTGTCATGGAGGTTTGGTTGAAGAAGGGAGAAAGTTTTTTACTCAAATGACCACAAAGTTCAACATTCTGCCTAAATCTAAACATTACGCTTGCATGGTGGACCTTTTGGGCAGGGCAGGGCTTCTGGAAGAAGCTTATGAGCTTGTCCGTGGAGTGCCAAATGAGGCTGATGCTTCGGTATGGGGAGCATTGTTTTTCGCTTGTCGAGTTCACAGGAACATTGAGATGGGGGAAAAGGCAGCTCTGAAACTTCTTGAATTGGATCCTGGTGATAGTGGAACTTATGTCTTACTTGCTAACATGTATGTTGAAGCAAA</genome_strand>
        <mrna_strand>AAAAAACATAAGCTTTGTTTAACTGTTTCTCTGGGAACTGCACTTGTTGATATGTATGCCAAATGTGGTAACATCGAAAAAACGCTTCAGGTTTTTCATGAGATGCCCATCAGAAACTCATTGACTTGGACAGCTGCAATTGGTGCCTTGGCGCATCATGGAAATGGACATGATGCTCTATCATATTTTTTGAAGATGGTTGACAGTGGCCTGAGACCAGATGATGTCACATTTCTTGGGGTCTTGTCAGCTTGTTGTCATGGAGGTTTGGTTGAAGAAGGGCGAAAGTTTTTTGCTCAAATGAGCAAAAAGTTCAAAATTCCCCCCAAATCTAAACATTACTCTTGCATAGTAGACCTTTTGGGCAGGGCAGGGCTCCTGGAAGAAGCTTATGAGCTAGTCCATGGGGTGCCAAATGAGGCTGATGCTTCAGTATGGGGAGCATTGTTTTTTGCTTGTCGAGTTCATAGGAACATTGAGATGGGGGAAAAGGCAGCTCTGAAACTTCTTGAATTGGATCCTGGTGATAGTGGAACTTATGTCTTACTTGCTAACATGTATGTTGAAGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689103" ref_strand="+" ref_description="SGN-E689103 [t3_tus_80_B19]">
      <seq>cgctctctctcatgccattttcacacaaaggagaaaaaaaaaaaaaaaaaaagagaacaactttgatgaactgcataaggcattcaataaagcaaacaaacaaatgtcggttctttaatctctttattattcttcctttcttcaccaccttatcttccattttcattttctcaatctcaaaaatggattgctaaaactgaaaaggatccacatttataatcttgaaatcggagtttcatatgttgatggttcttctctgtgctctccaaaaaacttagtgtctgctgcaaaatagtaattcaccatgaactggaatcagcaaacggaaatttattatacaaatggtgctatgccttataattcaattggaagttttatggatttctttggaggtgttacgtatgaccatgttaattatatatttgctgatcctccctatgctcaggatgtgcaaaataacttgtacaatgagggtgcaattggaacagtcaataagttctacacttgtaaaattaactttgcaacctggacattttaaaaatcatgataggataagcatatataactagcagtgctcatgaatataaaaagaagtccatgaaaaagtggaagtttgtttatcaagtatgtgctgttctatatgcacatacttttactctagtagtgtgcatagagaaaacttagaaccatgccttagtacacataaacaacatgtatcaactgcataattagcaactatgctgcatctgagggacactagctttcatttgctctattctgctacaaactgctaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="-" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="131869" stop="129098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131571" g_stop="131387" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131386" i_stop="130188" i_length="1199">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130187" g_stop="130093" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="280" r_length="95" r_score="0.937"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130092" i_stop="130020" i_length="73">
            <donor d_prob="0.864" d_score="0.94"/>
            <acceptor a_prob="0.768" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130019" g_stop="129855" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="445" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129854" i_stop="129748" i_length="107">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129747" g_stop="129398" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="795" r_length="350" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="-" ref_id="SGN-E689103" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131571" e_stop="131387"/>
          <exon e_start="130187" e_stop="130093"/>
          <exon e_start="130019" e_stop="129855"/>
          <exon e_start="129747" e_stop="129398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTCTCATGCCATTTTCACACAAAGGAGAAAAAAAAAAAGAAGAAGAGAGAACAACTTTGATGAACTGCATAAGGCATTCAATAAAGCAAACAAACAAATGTCGGTTCTTTAATCTCTTTATTATTCTTCCTTTCTTCACCACCTTATCTTCCATTTTCATTTTCTCAATCTCAAAAATGGTGAGCTAACCTAATAATTTTTTCAATCTCAAATTCCGTTTTAATTTCGTTGCATTTTTTTTTGATTTCTGACGGAAATCTACGTTCTGCATTCTTCCGGTTTTTATGGCAAAATCAAGGAATTTATGATAGGTTATGGTGAAGTTTTGGTTTTTATAAGCAAATGTGGCGTTAATTGCTTCCTGATTGTTGTTGCGATCCGTTTGATGAAAATGCTTGAAATTATTTGAAGAAAAAATTAAAGGAATTTCGATTTGGTTGAAATTTGGTTTGGCTACTTTTTTTTTTTTAAAAGAAGTGTACTGTGCTATTATATTGTGGTAATTTCTGTTGAATTGTGTTGAGATCTGTTGGGGGTACTCTTTTGTTCTAAGCAAGTAGGGAATTTCTGCATTCTTCCGGTTTTCATGAAAAAAAATCAACAAATTGATGATGGGTGATGGTGAAGTTTGGTTTTTAGAAGCAAATGTGGTGTTAATTGCCTTCTAATTGTTGTTGCGATCCGTTTTATTAAAATAAAAATTGAAAGGAAAACGAATAAACCTGAAAGTATAAAATTTCTTGTGCATTTGTTCAGGAATTATTGTTTGATTTAGTTGAAATTTCTTGCTAGAGAAAGGTTAGATTTTATCACTGAGTTTCTCAAGTAAAATGTGTGAAATCTGGTGTTAAATTTCGTCCACATTGATGCAATCTGTTAATGCTGGAAGATAAGAGGAAAAAGCATATTTTTTTTTCTTTTGATTCTGTGTATGTTTTGAAATATCAAGTTATTATTGCTTGATTTGTTTGAAGTTATGTGGAGCAGCTTGGTTTTATGTCTGATTTTCTTAAGTATAAAGTGCCTATATGTTGTTACTTTTAACTCGATTGTTGTTGCAAATTTTGGTTTCTGAGGGAGTTACTTTTAACTCAACTGTTGTTGCGAATTTTGGTTTCTGAGGGAGTGCTGGAAATGAGTGGAAAATATAGTTCTGTTTTTGAAGAGATGTAAGGGAAGTTACTTGAGTTAGTTCTATTTTCAGTTCAAAAGAATTAGTTAAAATTTCTTGATAGTGAATTGTTTTTTTTTTGTTTGCTTTTCCCTTTTGTTAATCTTTGTGCATCAGCAAGGATATAACATATGTATTTTTGTCTTCTAATTTTTCTTTTTGGTTTGGTTTATAGATGATAAAGAAACTGATTGTTTGTTTTAATAGGATTGCTAAAACTGAAGAGGATCCACATTTATTATCTTGGAATCGGAGTTTCATATGTTGATTGTTCTTCTCTGTGCTCTCCAGAAGACTTAGTGGTAAATATTATTTTTGTTGACTTTAGTCGTCATAGCTACTTTAGCTTTAAGAATTGACACGGCAAATTTGCAGTCTGCTGCAGAATAGTAATTCACCATGAACTGGAATCAGCAAACGGAAATTTATTATACAAATGGTGCTATGCCTTATAATTCAATTGGAAGTTTTATGGATTTCTTTGGAGGTGTTACGTATGACCATGTTAATTATATATTTGCTGATCCTCCCTATGCTCAGGTATTCAGTAGTTTCACAGAAGTTGAACATTTTTTTTCAATATTCATGTTGTGCCTTCCACTACTTCCATTTTGATCCGTATTTCCATCTTCTGCCCTGCTATGCAGGATGTGCAAAATAACTTGTACAATGAGGGTGCAATTGGAACAGTCAATAAGTTCTACACTTGTAGAATTAACTTTGCAACCTGGACATTTTAAAAATCATGATAGGATAAGCATATATTACTAGCAGTGCTCATGAATATGAAAAGAAGTCCATGAGAAAGTGGAAGTTTGTTTATCAAGTATGTGCTGTTCTATATGCACATACATTTACTCTAGTAGTGTGCATAGAGAAAACTTAGAACCATGCCTTAGTACACATAAACAACATGTATCAACTGCATAATTAGCAACTATGCTGCATCTGAAGGACACTAGCTTTCAATTGCTCTATTCTGCTACAAACTGCTAAG</genome_strand>
        <mrna_strand>CGCTCTCTCTCATGCCATTTTCACACAAAGGAGAAAAAAAAAAAAAAAAAAAGAGAACAACTTTGATGAACTGCATAAGGCATTCAATAAAGCAAACAAACAAATGTCGGTTCTTTAATCTCTTTATTATTCTTCCTTTCTTCACCACCTTATCTTCCATTTTCATTTTCTCAATCTCAAAAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTAAAACTGAAAAGGATCCACATTTATAATCTTGAAATCGGAGTTTCATATGTTGATGGTTCTTCTCTGTGCTCTCCAAAAAACTTAGTG.........................................................................TCTGCTGCAAAATAGTAATTCACCATGAACTGGAATCAGCAAACGGAAATTTATTATACAAATGGTGCTATGCCTTATAATTCAATTGGAAGTTTTATGGATTTCTTTGGAGGTGTTACGTATGACCATGTTAATTATATATTTGCTGATCCTCCCTATGCTCAG...........................................................................................................GATGTGCAAAATAACTTGTACAATGAGGGTGCAATTGGAACAGTCAATAAGTTCTACACTTGTAAAATTAACTTTGCAACCTGGACATTTTAAAAATCATGATAGGATAAGCATATATAACTAGCAGTGCTCATGAATATAAAAAGAAGTCCATGAAAAAGTGGAAGTTTGTTTATCAAGTATGTGCTGTTCTATATGCACATACTTTTACTCTAGTAGTGTGCATAGAGAAAACTTAGAACCATGCCTTAGTACACATAAACAACATGTATCAACTGCATAATTAGCAACTATGCTGCATCTGAGGGACACTAGCTTTCATTTGCTCTATTCTGCTACAAACTGCTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323777" ref_strand="+" ref_description="SGN-E323777 [cTOC-5-B20]">
      <seq>tctctctcatgccattttcacacaaaggagaaaaaaaaaaagaagaagagagaacaactttgatgaactgcataaggcattcaataaagcaaacaaacaaatgtcggttctttaatctctttattattcttcctttcttcaccaccttatcttccattttcattttctcaatctcaaaaatggattgctaaaactgaagaggatccacatttattatcttggaatcggagtttcatatgttgattgttcttctctgtgctctccagaagacttagtgtctgctgcagaatagtaattcaccatgaactggaatcagcaaacggaaatttattatacaaatggtgctatgccttataattcaattggaagttttatggatttctttggaggtgttacgtatgaccatgttaattatatatttgctgatcctccctatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0245M17-nHNwY/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0245M17.2" temp_strand="-" temp_description="C11HBa0245M17.2  AC212439.2 htgs_phase:3 submitted_to_sgn_as:gi|166159198|gb|AC212439.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0245M17, complete sequence">
        <position start="131868" stop="129559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131568" g_stop="131387" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131386" i_stop="130188" i_length="1199">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130187" g_stop="130093" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="277" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130092" i_stop="130020" i_length="73">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130019" g_stop="129859" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="438" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0245M17.2" gen_strand="-" ref_id="SGN-E323777" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0245M17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131568" e_stop="131387"/>
          <exon e_start="130187" e_stop="130093"/>
          <exon e_start="130019" e_stop="129859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCATGCCATTTTCACACAAAGGAGAAAAAAAAAAAGAAGAAGAGAGAACAACTTTGATGAACTGCATAAGGCATTCAATAAAGCAAACAAACAAATGTCGGTTCTTTAATCTCTTTATTATTCTTCCTTTCTTCACCACCTTATCTTCCATTTTCATTTTCTCAATCTCAAAAATGGTGAGCTAACCTAATAATTTTTTCAATCTCAAATTCCGTTTTAATTTCGTTGCATTTTTTTTTGATTTCTGACGGAAATCTACGTTCTGCATTCTTCCGGTTTTTATGGCAAAATCAAGGAATTTATGATAGGTTATGGTGAAGTTTTGGTTTTTATAAGCAAATGTGGCGTTAATTGCTTCCTGATTGTTGTTGCGATCCGTTTGATGAAAATGCTTGAAATTATTTGAAGAAAAAATTAAAGGAATTTCGATTTGGTTGAAATTTGGTTTGGCTACTTTTTTTTTTTTAAAAGAAGTGTACTGTGCTATTATATTGTGGTAATTTCTGTTGAATTGTGTTGAGATCTGTTGGGGGTACTCTTTTGTTCTAAGCAAGTAGGGAATTTCTGCATTCTTCCGGTTTTCATGAAAAAAAATCAACAAATTGATGATGGGTGATGGTGAAGTTTGGTTTTTAGAAGCAAATGTGGTGTTAATTGCCTTCTAATTGTTGTTGCGATCCGTTTTATTAAAATAAAAATTGAAAGGAAAACGAATAAACCTGAAAGTATAAAATTTCTTGTGCATTTGTTCAGGAATTATTGTTTGATTTAGTTGAAATTTCTTGCTAGAGAAAGGTTAGATTTTATCACTGAGTTTCTCAAGTAAAATGTGTGAAATCTGGTGTTAAATTTCGTCCACATTGATGCAATCTGTTAATGCTGGAAGATAAGAGGAAAAAGCATATTTTTTTTTCTTTTGATTCTGTGTATGTTTTGAAATATCAAGTTATTATTGCTTGATTTGTTTGAAGTTATGTGGAGCAGCTTGGTTTTATGTCTGATTTTCTTAAGTATAAAGTGCCTATATGTTGTTACTTTTAACTCGATTGTTGTTGCAAATTTTGGTTTCTGAGGGAGTTACTTTTAACTCAACTGTTGTTGCGAATTTTGGTTTCTGAGGGAGTGCTGGAAATGAGTGGAAAATATAGTTCTGTTTTTGAAGAGATGTAAGGGAAGTTACTTGAGTTAGTTCTATTTTCAGTTCAAAAGAATTAGTTAAAATTTCTTGATAGTGAATTGTTTTTTTTTTGTTTGCTTTTCCCTTTTGTTAATCTTTGTGCATCAGCAAGGATATAACATATGTATTTTTGTCTTCTAATTTTTCTTTTTGGTTTGGTTTATAGATGATAAAGAAACTGATTGTTTGTTTTAATAGGATTGCTAAAACTGAAGAGGATCCACATTTATTATCTTGGAATCGGAGTTTCATATGTTGATTGTTCTTCTCTGTGCTCTCCAGAAGACTTAGTGGTAAATATTATTTTTGTTGACTTTAGTCGTCATAGCTACTTTAGCTTTAAGAATTGACACGGCAAATTTGCAGTCTGCTGCAGAATAGTAATTCACCATGAACTGGAATCAGCAAACGGAAATTTATTATACAAATGGTGCTATGCCTTATAATTCAATTGGAAGTTTTATGGATTTCTTTGGAGGTGTTACGTATGACCATGTTAATTATATATTTGCTGATCCTCCCTATGC</genome_strand>
        <mrna_strand>TCTCTCTCATGCCATTTTCACACAAAGGAGAAAAAAAAAAAGAAGAAGAGAGAACAACTTTGATGAACTGCATAAGGCATTCAATAAAGCAAACAAACAAATGTCGGTTCTTTAATCTCTTTATTATTCTTCCTTTCTTCACCACCTTATCTTCCATTTTCATTTTCTCAATCTCAAAAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTAAAACTGAAGAGGATCCACATTTATTATCTTGGAATCGGAGTTTCATATGTTGATTGTTCTTCTCTGTGCTCTCCAGAAGACTTAGTG.........................................................................TCTGCTGCAGAATAGTAATTCACCATGAACTGGAATCAGCAAACGGAAATTTATTATACAAATGGTGCTATGCCTTATAATTCAATTGGAAGTTTTATGGATTTCTTTGGAGGTGTTACGTATGACCATGTTAATTATATATTTGCTGATCCTCCCTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>455</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="20966" PGL_stop="20740"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20966" e_stop="20740"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="20966" e_stop="20740" e_length="227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20966" stop="20740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACACGTTTCTTGCTGAAAATGGCTATAAAAGAAAGTCAATTTTCGATTTTTTAAACACTGAAAATTTTCCTTTTCTGCATTTATTTTTCTCTCAAATAAAATCAAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTCAAGTTCGCTGAAGTTAAAGAAATTTGAGGTACCACTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGATAAATT</gDNA_template>
            <first_frame> R  H  V  S  C  *  K  W  L  *  K  K  V  N  F  R  F  F  K  H  *  K  F  S  F  S  A  F  I  F  L  S  N  K  I  K  S  V  D  R  L  S  L  C  D  L  L  L  F  S  S  S  L  K  L  K  K  F  E  V  P  L  F  L  *  Q  V  *  S  V  L  S  W  D  K   </first_frame>
            <second_frame>  D  T  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  L  N  T  E  N  F  P  F  L  H  L  F  F  S  Q  I  K  S  K  V  S  I  D  *  V  C  V  T  C  C  C  S  Q  V  R  *  S  *  R  N  L  R  Y  H  Y  F  F  N  R  F  N  P  F  Y  L  G  I  N  </second_frame>
            <third_frame>   T  R  F  L  L  K  M  A  I  K  E  S  Q  F  S  I  F  *  T  L  K  I  F  L  F  C  I  Y  F  S  L  K  *  N  Q  K  C  R  S  T  E  S  V  *  L  V  A  V  L  K  F  A  E  V  K  E  I  *  G  T  T  I  S  L  T  G  L  I  R  F  I  L  G  *  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0245M17.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="25401" PGL_stop="24696"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25401" e_stop="24696"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="25401" e_stop="24696" e_length="706"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25401" stop="24696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25254" stop="24696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395006" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25230" stop="24696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250407" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25198" stop="24696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375520" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCATGTGGTGATTCAGCAATAGCTGGAGTAAATTTTGTTGAAGAAGATCAGACAAAATTAAAGAAAAGAAAGAAAGCATCTGGTCCAAAGCAATCCTCCTAAGAATAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTGATGAATGTCGGGGTCCAAAGAAGGACAAGAAAAAGAAGGATCAAGCAAATTTGGCTAAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGAAAATCCAAGAGAATGGTGGATATATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCACATATACTCTAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGTTGTTGTAAAGGTGGAAGGAACTGGCAAAGTCTTATTAAAGATGACATCAGGCAAGGTGGTGACTTTAAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGAATTCAAATGTGTATTTGTTTCTAATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGTAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTAATATGAATAAAGATTTTTCTTCTTCTTA</gDNA_template>
            <first_frame> *  G  *  E  S  K  R  I  I  R  L  Q  K  R  G  H  V  V  I  Q  Q  *  L  E  *  I  L  L  K  K  I  R  Q  N  *  R  K  E  R  K  H  L  V  Q  S  N  P  P  K  N  K  F  N  G  N  C  F  N  C  G  K  H  G  H  R  A  D  E  C  R  G  P  K  K  D  K  K  K  K  D  Q  A  N  L  A  K  S  K  G  E  M  D  D  L  C  A  M  L  S  E  C  N  L  V  E  N  P  R  E  W  W  I  Y  S  G  A  S  C  H  V  C  A  N  K  E  L  F  S  H  I  L  *  H  L  Q  M  K  N  C  L  W  Q  T  P  L  L  *  R  W  K  E  L  A  K  S  Y  *  R  *  H  Q  A  R  W  *  L  *  I  G  S  H  M  F  Q  N  *  E  R  I  *  F  Q  F  Q  F  *  P  R  M  N  S  N  V  Y  L  F  L  I  K  *  *  *  A  K  M  I  C  M  *  V  K  A  T  L  V  M  A  F  S  N  S  M  *  L  Q  L  I  *  I  K  I  F  L  L  L  </first_frame>
            <second_frame>  K  V  E  N  R  R  G  *  *  G  C  R  K  E  V  M  W  *  F  S  N  S  W  S  K  F  C  *  R  R  S  D  K  I  K  E  K  K  E  S  I  W  S  K  A  I  L  L  R  I  N  S  M  E  T  A  L  I  V  V  N  M  V  I  G  L  M  N  V  G  V  Q  R  R  T  R  K  R  R  I  K  Q  I  W  L  N  P  K  E  K  W  T  I  S  V  Q  C  F  Q  N  V  T  W  L  K  I  Q  E  N  G  G  Y  I  L  V  P  H  A  M  F  V  P  T  K  N  Y  F  H  I  Y  S  S  T  Y  R  *  K  I  V  Y  G  K  L  R  C  C  K  G  G  R  N  W  Q  S  L  I  K  D  D  I  R  Q  G  G  D  F  K  *  G  L  I  C  S  R  I  E  K  E  F  S  F  N  S  S  S  D  Q  E  *  I  Q  M  C  I  C  F  *  *  S  S  S  K  Q  K  *  Y  V  C  R  *  R  L  P  *  *  W  P  F  Q  T  Q  C  N  C  S  *  Y  E  *  R  F  F  F  F  L </second_frame>
            <third_frame>   R  L  R  I  E  E  D  N  K  A  A  E  K  R  S  C  G  D  S  A  I  A  G  V  N  F  V  E  E  D  Q  T  K  L  K  K  R  K  K  A  S  G  P  K  Q  S  S  *  E  *  I  Q  W  K  L  L  *  L  W  *  T  W  S  *  G  *  *  M  S  G  S  K  E  G  Q  E  K  E  G  S  S  K  F  G  *  I  Q  R  R  N  G  R  S  L  C  N  A  F  R  M  *  L  G  *  K  S  K  R  M  V  D  I  F  W  C  L  M  P  C  L  C  Q  Q  R  I  I  F  T  Y  T  L  A  L  T  D  E  K  L  F  M  A  N  S  V  V  V  K  V  E  G  T  G  K  V  L  L  K  M  T  S  G  K  V  V  T  L  N  R  V  S  Y  V  P  E  L  R  K  N  L  V  S  I  P  V  L  T  K  N  E  F  K  C  V  F  V  S  N  K  V  V  V  S  K  N  D  M  Y  V  G  K  G  Y  L  S  D  G  L  F  K  L  N  V  I  A  V  N  M  N  K  D  F  S  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0245M17.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25087" stop="24698"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSKRMVDIFWCLMPCLCQQRIIFTYTLALTDEKLFMANSVVVKVEGTGKVLLKMTSGKVVTLNRVSYVPELRKNLVSIPVLTKNEFKCVFVSNKVVVSKNDMYVGKGYLSDGLFKLNVIAVNMNKDFSSS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0245M17.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25316" stop="24993"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRSDKIKEKKESIWSKAILLRINSMETALIVVNMVIGLMNVGVQRRTRKRRIKQIWLNPKEKWTISVQCFQNVTWLKIQENGGYILVPHAMFVPTKNYFHIYSSTYR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="44366" PGL_stop="25413"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44366" e_stop="43261"/>
            <exon e_start="25524" e_stop="25413"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.662" e_score="0.923"/>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="44366" e_stop="43261" e_length="1106"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.662">
            <gDNA_intron_boundary i_start="43260" i_stop="25525" i_length="17736"/>
          </intron>
          <exon e_serial="2" e_score="0.920">
            <gDNA_exon_boundary e_start="25524" e_stop="25413" e_length="112"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44366" stop="43766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44366" stop="43795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44366" stop="43858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44356" stop="43964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44335" stop="43687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44304" stop="43978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44237" stop="43534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44197" stop="43495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44196" stop="43565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44080" stop="43472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43970" stop="43527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43936" stop="43261"/>
              <exon start="25524" stop="25428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43757" stop="43261"/>
              <exon start="25524" stop="25413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251204" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACACGTTTCTTGCTGAAATTGCTATAAAAGGAAGTCAATTTTCGATTTTTTAAACACTGAAAATTTTCCTTCTCTGCATTTATTTTTCTCTCCAATAAAATCAAACTGTCGATTGACTGAGTCTGTATGACTTGTTGTTGTTCTCAAGTTCGCTGAAGTTAAAGAAATTTGAGGTACCGCTATTTCTTTAACATGTTTAATTTGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGATACACAGTAGTTTCTGTGGACTCGGATTACTTCTTGTATTTTATGTTTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACCTTATAAATACAGGTTACTATAAGAATAACAATCTTAAGAAATTTAAAAGTTTCTGTATTTGAGGTTTTTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAATAACTTTATCGTTTAATCATAAACAGTTTGTGTAAAGATTTGTTATTTACTGTTAGTATTTCAAATACTTAACTTATCTGTCATTTGTGACAGAAAAAAATGACTGATTCAAGTCAAATAAATATTGGAACAGTAAGTGCTGCTACAACATCGGTTGCACATAATCGTTCAAATACTGCCTTAGAGCCGACTGAGAAACCTACAAAGTTTTCTGGAGTCAACTTTAAGAGATGAAAACAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTTATATCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTTGTGTAAAAATTATATTTTGAGTGATCTGTAAGATGATCTGTACAATGTGTACAGCAATGCCAAAACCTCAAAACAACTCTGGGATGCTTTAGAAAGGAAATATAAAACAGAAGATGCCAGAATGAAGAAATTCATTGTGACAAAAATTCTGGACTATAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGACCTCATTGCTGAAG : GATTGATTGTAAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACATCCATAATAGAAGGACTTCAAAAATTACTTGAAACACAAACGCAAGGAGATGACTGTTGA</gDNA_template>
            <first_frame> R  H  V  S  C  *  N  C  Y  K  R  K  S  I  F  D  F  L  N  T  E  N  F  P  S  L  H  L  F  F  S  P  I  K  S  N  C  R  L  T  E  S  V  *  L  V  V  V  L  K  F  A  E  V  K  E  I  *  G  T  A  I  S  L  T  C  L  I  C  F  I  L  G  E  I  N  P  *  P  W  V  Q  *  G  N  *  I  S  *  G  Y  T  V  V  S  V  D  S  D  Y  F  L  Y  F  M  F  F  C  F  I  L  F  L  F  L  F  I  N  L  I  N  T  G  Y  Y  K  N  N  N  L  K  K  F  K  S  F  C  I  *  G  F  W  R  L  K  P  L  *  F  S  T  L  L  E  F  L  K  F  I  R  L  T  I  K  R  T  *  *  L  Y  R  L  I  I  N  S  L  C  K  D  L  L  F  T  V  S  I  S  N  T  *  L  I  C  H  L  *  Q  K  K  M  T  D  S  S  Q  I  N  I  G  T  V  S  A  A  T  T  S  V  A  H  N  R  S  N  T  A  L  E  P  T  E  K  P  T  K  F  S  G  V  N  F  K  R  *  K  Q  K  M  F  F  Y  L  T  M  L  S  L  Q  K  F  I  N  E  N  V  P  V  I  S  D  E  T  P  A  D  E  R  F  L  V  T  E  A  W  T  H  S  D  F  F  V  *  K  L  Y  F  E  *  S  V  R  *  S  V  Q  C  V  Q  Q  C  Q  N  L  K  T  T  L  G  C  F  R  K  E  I  *  N  R  R  C  Q  N  E  E  I  H  C  D  K  N  S  G  L  *  D  D  R  Q  *  D  C  R  H  P  S  S  R  I  A  G  H  N  P  *  P  H  C  *  R :   I  D  C  K  *  C  F  S  S  G  C  N  Y  *  K  V  T  S  I  I  E  G  L  Q  K  L  L  E  T  Q  T  Q  G  D  D  C  * </first_frame>
            <second_frame>  D  T  F  L  A  E  I  A  I  K  G  S  Q  F  S  I  F  *  T  L  K  I  F  L  L  C  I  Y  F  S  L  Q  *  N  Q  T  V  D  *  L  S  L  Y  D  L  L  L  F  S  S  S  L  K  L  K  K  F  E  V  P  L  F  L  *  H  V  *  F  V  L  S  W  E  K  L  I  H  N  L  G  Y  S  E  G  I  K  F  L  K  D  T  Q  *  F  L  W  T  R  I  T  S  C  I  L  C  F  S  A  S  S  Y  F  C  F  C  L  L  T  L  *  I  Q  V  T  I  R  I  T  I  L  R  N  L  K  V  S  V  F  E  V  F  G  D  *  N  L  Y  D  F  L  L  C  L  N  F  *  N  S  F  D  *  R  L  K  E  H  N  N  F  I  V  *  S  *  T  V  C  V  K  I  C  Y  L  L  L  V  F  Q  I  L  N  L  S  V  I  C  D  R  K  K  *  L  I  Q  V  K  *  I  L  E  Q  *  V  L  L  Q  H  R  L  H  I  I  V  Q  I  L  P  *  S  R  L  R  N  L  Q  S  F  L  E  S  T  L  R  D  E  N  K  R  C  S  S  I  S  L  C  *  V  C  R  S  S  L  M  R  M  F  L  L  Y  Q  M  K  L  R  L  M  N  D  S  W  *  Q  K  H  G  H  T  Q  I  F  L  C  K  N  Y  I  L  S  D  L  *  D  D  L  Y  N  V  Y  S  N  A  K  T  S  K  Q  L  W  D  A  L  E  R  K  Y  K  T  E  D  A  R  M  K  K  F  I  V  T  K  I  L  D  Y  K  M  I  D  S  K  T  V  V  T  Q  V  Q  E  L  Q  V  I  I  H  D  L  I  A  E   : G  L  I  V  N  D  A  F  Q  V  A  A  I  I  E  K  L  H  P  *  *  K  D  F  K  N  Y  L  K  H  K  R  K  E  M  T  V   </second_frame>
            <third_frame>   T  R  F  L  L  K  L  L  *  K  E  V  N  F  R  F  F  K  H  *  K  F  S  F  S  A  F  I  F  L  S  N  K  I  K  L  S  I  D  *  V  C  M  T  C  C  C  S  Q  V  R  *  S  *  R  N  L  R  Y  R  Y  F  F  N  M  F  N  L  F  Y  L  G  R  N  *  S  I  T  L  G  T  V  R  E  L  N  F  L  R  I  H  S  S  F  C  G  L  G  L  L  L  V  F  Y  V  F  L  L  H  L  I  S  V  S  V  Y  *  P  Y  K  Y  R  L  L  *  E  *  Q  S  *  E  I  *  K  F  L  Y  L  R  F  L  E  I  K  T  F  M  I  F  Y  S  A  *  I  F  K  I  H  S  I  N  D  *  K  N  I  I  T  L  S  F  N  H  K  Q  F  V  *  R  F  V  I  Y  C  *  Y  F  K  Y  L  T  Y  L  S  F  V  T  E  K  N  D  *  F  K  S  N  K  Y  W  N  S  K  C  C  Y  N  I  G  C  T  *  S  F  K  Y  C  L  R  A  D  *  E  T  Y  K  V  F  W  S  Q  L  *  E  M  K  T  K  D  V  L  L  S  H  Y  V  E  S  A  E  V  H  *  *  E  C  S  C  Y  I  R  *  N  S  G  *  *  T  I  L  G  N  R  S  M  D  T  L  R  F  F  C  V  K  I  I  F  *  V  I  C  K  M  I  C  T  M  C  T  A  M  P  K  P  Q  N  N  S  G  M  L  *  K  G  N  I  K  Q  K  M  P  E  *  R  N  S  L  *  Q  K  F  W  T  I  R  *  *  T  V  R  L  S  S  P  K  F  K  N  C  R  S  *  S  M  T  S  L  L  K  :  D  *  L  *  M  M  L  F  K  W  L  Q  L  L  K  S  Y  I  H  N  R  R  T  S  K  I  T  *  N  T  N  A  R  R  *  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0245M17.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43462" stop="43261"/>
                    <exon start="25524" stop="25466"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DDLYNVYSNAKTSKQLWDALERKYKTEDARMKKFIVTKILDYKMIDSKTVVTQVQELQVIIHDLIAEGLIVNDAFQVAAIIEKLHP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="33344" e_stop="32603"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="33344" e_stop="32603" e_length="742"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33344" stop="32617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33344" stop="32692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33344" stop="32763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33263" stop="32603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392027" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGCCGATGATATCTACTCAGTACTCGTGTTTTGTACTGACCCTTACTTTTATGTTTTTCTTCTTGTTATTTTTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAAGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAGGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTTGCTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGTTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTTGCGATCCGATTTGGGTCGTGAAAAATTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTACAAGACTTTAGAAAAATTCCATTCTTTCTTTCTTTCGTGCTATTACTTGGATCCAATTGGTATCTAGGTGATACAAATTGGTATCTAACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGATCAACGACTGCGCCAACACCAAC</gDNA_template>
            <first_frame> L  A  D  D  I  Y  S  V  L  V  F  C  T  D  P  Y  F  Y  V  F  L  L  V  I  F  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  S  H  R  I  F  K  V  S  *  R  F  *  L  G  L  D  L  L  L  H  V  L  M  P  *  T  S  G  M  D  *  L  L  M  Y  F  *  L  L  R  N  S  *  N  *  *  F  K  V  D  V  L  V  M  M  T  S  R  F  W  E  *  *  M  L  N  I  D  S  Y  *  I  C  F  Y  *  *  V  *  V  F  R  I  T  F  C  C  Y  Y  I  E  M  L  R  F  R  L  V  G  S  L  T  *  E  G  K  C  G  C  Q  L  R  S  D  L  G  R  E  K  F  G  I  R  A  L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  Q  D  F  R  K  I  P  F  F  L  S  F  V  L  L  L  G  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  D  Q  R  L  R  Q  H  Q  </first_frame>
            <second_frame>  W  P  M  I  S  T  Q  Y  S  C  F  V  L  T  L  T  F  M  F  F  F  L  L  F  L  E  C  S  K  R  A  V  I  F  D  S  T  V  T  Q  A  S  L  R  H  T  G  S  S  R  *  A  N  A  S  S  L  D  W  I  F  S  F  M  S  *  C  L  E  L  P  A  W  T  S  F  L  C  I  F  S  F  L  E  T  L  R  I  S  S  L  R  *  M  F  L  *  *  *  L  P  G  F  G  N  N  R  C  *  I  L  I  V  I  E  F  A  F  I  N  E  F  K  S  S  A  L  L  S  V  V  I  T  L  K  C  *  G  L  D  W  L  V  R  S  H  R  R  V  S  V  G  A  S  C  D  P  I  W  V  V  K  N  L  V  S  E  H  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  E  K  F  H  S  F  F  L  S  C  Y  Y  L  D  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  N  *  I  N  D  C  A  N  T  N </second_frame>
            <third_frame>   G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  S  S  C  Y  F  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  L  K  P  V  F  V  T  P  D  L  Q  G  E  L  T  L  L  A  W  T  G  S  S  P  S  C  L  D  A  L  N  F  R  H  G  L  A  S  Y  V  F  L  A  S  *  K  L  L  E  L  V  V  *  G  R  C  S  C  D  D  D  F  Q  V  L  G  I  I  D  V  E  Y  *  *  L  L  N  L  L  L  L  M  S  L  S  L  P  H  Y  F  L  L  L  L  H  *  N  V  K  V  *  I  G  W  F  A  H  I  G  G  *  V  W  V  P  V  A  I  R  F  G  S  *  K  I  W  Y  Q  S  I  R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  T  R  L  *  K  N  S  I  L  S  F  F  R  A  I  T  W  I  Q  L  V  S  R  *  Y  K  L  V  S  N  H  L  H  S  I  S  Q  M  V  R  T  R  S  T  T  A  P  T  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0245M17.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32903" stop="32604"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGKCGCQLRSDLGREKFGIRALGSLVSSHKNESSRVLRNGRGTPLLFFERLQDFRKIPFFLSFVLLLGSNWYLGDTNWYLTIFTLFRRWLELDQRLRQHQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="29194" PGL_stop="29370"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29194" e_stop="29370"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="29194" e_stop="29370" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29194" stop="29370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTCCTTTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  R  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  G  S  Y  P  N  D  H  Q  T  L  S  H  T  H  E  A  Y  P  P  T  L  E  S  S  F  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  T  T  K  L  Y  H  T  R  T  K  H  I  L  Q  H  L  N  R  P  F  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0245M17.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="30675" PGL_stop="32494"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30675" e_stop="32494"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="30675" e_stop="32494" e_length="1820"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30675" stop="31387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30675" stop="31270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30675" stop="31199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30746" stop="31425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30746" stop="31104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31195" stop="31853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31264" stop="32026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31264" stop="31924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31667" stop="31998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31874" stop="32433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31961" stop="32494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353805" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTTTCAATCTTAGAAGGATCCACCATCACTCCTTCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGTTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAACACGATCACGAAGAGGTCCAAATATGGCTTAAAAATACCATTCATCAAGCTCATGAACGCAGCAGAGGCATTCGTAAGACCAAAAGACATCACCACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCTGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACTTTATTCAGTTGTCTGTAATCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGCACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTCGTCACCCTCCCACACTAACAGATCTGTCCCAGGCTTGGCTAACGTCACGGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGTCAAGTCATACCCAGAATTACATCGAAATCATACATTGCCAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCACACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCGAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAAATTACCTGTGATGACAGCATCAGATGTCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGTCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGAGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGATTCAATCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  G  S  Y  P  I  L  H  C  F  N  L  R  R  I  H  H  H  S  F  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  F  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  H  D  H  E  E  V  Q  I  W  L  K  N  T  I  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  R  H  H  H  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  C  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  N  S  Y  F  I  Q  L  S  V  I  Y  A  H  P  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  V  Q  *  L  L  K  L  C  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  G  F  K  I  N  T  E  V  N  I  P  I  R  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  N  Y  *  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  Q  I  C  P  R  L  G  *  R  H  G  F  S  I  T  I  Q  D  C  K  I  W  R  K  S  S  H  T  Q  N  Y  I  E  I  I  H  C  Q  D  N  Q  I  Y  I  S  V  A  P  H  K  V  Y  H  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  K  F  T  M  *  I  *  T  I  S  E  M  R  K  I  H  K  K  T  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  N  Y  L  *  *  Q  H  Q  M  S  P  L  Q  T  A  Q  G  K  R  N  N  G  S  Y  R  S  S  V  R  C  P  Y  H  V  V  M  *  W  P  Q  F  A  H  Y  L  C  R  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  L  L  R  V  Y  N  F  V  W  D  N  F  S  *  Y  V  Q  S  P  H  I  H  N  I  L  W  I  Q  S  *  A  P  R  R  S  V  D  R  S  E  V  V  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  F  P  N  P  V  L  *  C  K  N  H  *  T  H  L  P  F  E  A  F  L  M  S  M  L  W  *  S  R  L  A  S  L  L   </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  E  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  L  I  V  T  L  F  S  C  L  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  A  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  S  S  P  S  H  T  N  R  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  Y  I  A  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  T  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  R  N  S  Q  C  K  F  R  P  L  A  K  *  G  R  Y  I  R  K  R  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  R  L  S  V  A  P  T  M  L  *  C  S  G  P  S  L  P  I  T  S  A  V  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  A  S  T  M  T  T  S  T  S  S  Y  *  G  S  I  T  L  S  G  T  I  F  P  N  M  S  N  L  P  T  S  I  T  F  S  G  F  N  H  R  P  L  G  E  V  L  T  G  L  R  W  S  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  S  S  V  R  T  I  K  L  T  S  L  S  K  P  F  *  C  R  C  C  G  E  V  V  W  L  H  S  F  </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  W  V  L  P  N  S  S  L  F  Q  S  *  K  D  P  P  S  L  L  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  V  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  T  R  S  R  R  G  P  N  M  A  *  K  Y  H  S  S  S  S  *  T  Q  Q  R  H  S  *  D  Q  K  T  S  P  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  L  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  *  *  L  L  Y  S  V  V  C  N  L  C  T  S  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  H  R  V  Q  D  Q  Y  R  S  Q  Y  P  Y  P  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  E  L  L  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  R  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  R  F  *  H  Y  N  P  R  L  Q  N  L  E  K  V  K  S  Y  P  E  L  H  R  N  H  T  L  P  R  *  P  N  L  H  K  C  C  S  P  Q  S  L  P  H  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  E  I  H  N  V  N  L  D  H  *  R  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  K  L  P  V  M  T  A  S  D  V  S  A  S  D  R  P  G  K  A  *  Q  W  V  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  L  P  L  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  E  G  L  *  L  C  L  G  Q  F  F  L  I  C  P  I  S  P  H  P  *  H  S  L  D  S  I  I  G  P  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  L  P  E  P  C  P  L  V  *  E  P  L  N  S  P  P  F  R  S  L  F  D  V  D  V  V  V  K  S  S  G  F  T  P  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0245M17.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31402" stop="31797"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRAPGSRSIQKSISLSGGIPGRSAGNTSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRTGLEVSSPSHTNRSVPGLANVTVLALQSKIAKFGESQVIPRITSKSYIAKITKST*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0245M17.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30939" stop="31178"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKHDHEEVQIWLKNTIHQAHERSRGIRKTKRHHHKFVMPIPRSKSSLWHICCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="45997" PGL_stop="51418"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45997" e_stop="46196"/>
            <exon e_start="47932" e_stop="48442"/>
            <exon e_start="48560" e_stop="48931"/>
            <exon e_start="49291" e_stop="49908"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
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              <exon start="48703" stop="48931"/>
              <exon start="49291" stop="49679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48727" stop="48931"/>
              <exon start="49291" stop="49434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48736" stop="48931"/>
              <exon start="49291" stop="49850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48736" stop="48931"/>
              <exon start="49291" stop="49845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48744" stop="48931"/>
              <exon start="49291" stop="49752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48745" stop="48931"/>
              <exon start="49291" stop="49770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48746" stop="48931"/>
              <exon start="49291" stop="49808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611486" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48748" stop="48931"/>
              <exon start="49291" stop="49832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486277" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48759" stop="48931"/>
              <exon start="49291" stop="49560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48760" stop="48931"/>
              <exon start="49291" stop="49832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482282" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48790" stop="48931"/>
              <exon start="49291" stop="49850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48791" stop="48931"/>
              <exon start="49291" stop="49699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48793" stop="48931"/>
              <exon start="49291" stop="49638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48795" stop="48931"/>
              <exon start="49291" stop="49668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48800" stop="48931"/>
              <exon start="49291" stop="49540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216758" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48801" stop="48931"/>
              <exon start="49291" stop="49754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48801" stop="48931"/>
              <exon start="49291" stop="49720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48801" stop="48931"/>
              <exon start="49291" stop="49608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48801" stop="48931"/>
              <exon start="49291" stop="49382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48808" stop="48931"/>
              <exon start="49291" stop="49851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48812" stop="48931"/>
              <exon start="49291" stop="49700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48813" stop="48931"/>
              <exon start="49291" stop="49844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48813" stop="48931"/>
              <exon start="49291" stop="49841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48834" stop="48931"/>
              <exon start="49291" stop="49856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417440" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48834" stop="48931"/>
              <exon start="49291" stop="49813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292181" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48845" stop="48931"/>
              <exon start="49291" stop="49903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371559" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48847" stop="48931"/>
              <exon start="49291" stop="49832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484013" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48854" stop="48931"/>
              <exon start="49291" stop="49748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603056" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48864" stop="48931"/>
              <exon start="49291" stop="49394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48883" stop="48931"/>
              <exon start="49291" stop="49873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575208" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48904" stop="48931"/>
              <exon start="49291" stop="49813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48912" stop="48931"/>
              <exon start="49291" stop="49542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48915" stop="48931"/>
              <exon start="49291" stop="49846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268431" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49295" stop="49828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49296" stop="49830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49297" stop="49876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49297" stop="49835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49297" stop="49819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49315" stop="49845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594383" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49315" stop="49845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594515" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49315" stop="49843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49322" stop="49813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49323" stop="49851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49325" stop="49850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49325" stop="49850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49344" stop="49832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49347" stop="49748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49357" stop="49908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49364" stop="49852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49368" stop="49904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452284" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49369" stop="49857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49373" stop="49860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49398" stop="49875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49398" stop="49850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49406" stop="49845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49413" stop="49799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49416" stop="49865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361927" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49420" stop="49832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49424" stop="49751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49434" stop="49592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49436" stop="49784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49446" stop="49904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49457" stop="49850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49465" stop="49869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49466" stop="49904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49488" stop="49904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49495" stop="49800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49501" stop="49832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49518" stop="49853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49524" stop="49853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49543" stop="49845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49554" stop="49860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49574" stop="49832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220203" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAGTGGCTGAATACAAATTGTTGGGCGCCCGCGAAGTAGGGATTAAAAGTCAAATTCCTACAAAAATATTCGCTAAAATAAGTCCCAATAAAACCAATATATATAGCAGTATTGCGTTCGCCGTTTCAACTCCATTCACCCCTCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG : GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG : GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG : GATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAAATGCGGATCAGTTTGGTACTTGTGTTATTTTAAGTGTGGTATACAATATTAAGCATGC</gDNA_template>
            <first_frame> R  V  A  E  Y  K  L  L  G  A  R  E  V  G  I  K  S  Q  I  P  T  K  I  F  A  K  I  S  P  N  K  T  N  I  Y  S  S  I  A  F  A  V  S  T  P  F  T  P  L  S  H  H  H  L  L  V  L  L  L  Y  T  R  R  V  E  R  R :   T  F  L  N  V  A  M  T  D  M  N  Q  H  P  T  V  F  Q  K  A  A  N  Q  L  H  L  R  S  S  L  S  Q  D  V  H  A  R  Y  G  G  V  Q  P  A  I  Y  Q  R  H  F  A  Y  G  N  Y  S  N  A  A  L  Q  R  G  Q  A  T  Q  D  L  S  L  I  T  S  N  A  S  P  V  F  V  Q  A  P  Q  E  K  G  F  A  A  F  A  T  D  F  L  M  G  G  V  S  A  A  V  S  K  T  A  A  A  P  I  E  R  V  K  L  L  I  Q  N  Q  D  E  M  L  K  A  G  R  L  S  E  P  Y  K  G  I  G  D  C  F  G  R  T  I  K  E  E  G  F  G  S  L  W  R  G  N  T  A  N  V  I  R  Y  F  P  T  Q  :  A  L  N  F  A  F  K  D  Y  F  K  R  L  F  N  F  K  K  D  R  D  G  Y  W  K  W  F  A  G  N  L  A  S  G  G  A  A  G  A  S  S  L  F  F  V  Y  S  L  D  Y  A  R  T  R  L  A  N  D  A  K  A  S  K  K  G  G  E  R  Q  F  N  G  L  V  D  V  Y  R  K  T  L  K  S  D  G  I  A  G  L  Y  R  G  F  N  I  S  C  V  G  I  I  V  Y  R  G  L  Y  F  G  M  Y  D  S  L  K  P  V  L  L  T  G  N  L  Q  :  D  S  F  F  A  S  F  A  L  G  W  L  I  T  N  G  A  G  L  A  S  Y  P  I  D  T  V  R  R  R  M  M  M  T  S  G  E  A  V  K  Y  K  S  S  L  D  A  F  S  Q  I  V  K  N  E  G  P  K  S  L  F  K  G  A  G  A  N  I  L  R  A  V  A  G  A  G  V  L  A  G  Y  D  K  L  Q  V  L  V  L  G  K  K  Y  G  S  G  G  A  *  V  S  L  V  T  S  F  R  I  *  M  V  M  K  I  F  L  V  L  H  L  S  I  Q  L  G  R  Q  L  S  L  F  L  L  P  F  F  F  V  I  I  R  K  I  L  E  W  V  K  A  *  K  P  H  T  R  F  P  C  *  R  V  I  T  V  L  F  G  R  T  L  F  Q  L  Q  S  L  Q  I  L  N  E  S  F  D  K  I  K  C  G  S  V  W  Y  L  C  Y  F  K  C  G  I  Q  Y  *  A  C </first_frame>
            <second_frame>  E  W  L  N  T  N  C  W  A  P  A  K  *  G  L  K  V  K  F  L  Q  K  Y  S  L  K  *  V  P  I  K  P  I  Y  I  A  V  L  R  S  P  F  Q  L  H  S  P  L  F  L  I  I  I  S  S  F  F  S  S  T  R  G  E  S  N  E   : G  L  F  *  T  L  Q  *  Q  I  *  I  S  I  Q  L  F  S  R  R  Q  L  T  S  C  T  C  A  L  V  Y  P  K  M  S  M  L  A  M  G  A  F  S  L  L  S  T  R  G  I  L  L  M  A  T  T  P  M  L  L  C  R  E  A  K  P  L  R  I  Y  H  *  S  P  Q  M  P  H  L  C  L  C  R  L  L  K  R  K  D  L  Q  L  L  P  L  T  F  S  W  V  E  F  L  L  L  Y  Q  R  P  L  L  P  L  L  S  V  *  N  Y  *  S  K  I  K  M  R  C  S  R  L  V  G  C  Q  N  H  T  R  E  L  A  I  V  S  G  G  Q  L  R  K  K  V  L  G  L  Y  G  E  E  T  L  L  M  L  S  V  I  S  P  L  R :   P  *  T  L  H  S  R  T  T  S  R  D  S  S  T  S  R  R  T  V  M  A  T  G  S  G  L  L  E  T  L  H  Q  E  V  L  L  V  L  P  L  C  S  L  S  T  P  W  T  M  L  V  P  V  L  L  M  M  P  R  L  Q  R  R  E  A  R  G  S  S  M  V  W  L  M  S  T  G  R  H  S  N  L  M  E  L  L  V  Y  T  V  D  S  T  F  H  V  L  V  S  L  F  T  V  V  C  T  L  E  C  T  T  P  *  S  L  S  S  *  Q  E  T  C  R :   I  V  S  L  L  A  L  H  L  V  G  S  S  P  M  V  L  V  L  L  L  T  P  L  I  Q  *  E  E  E  *  *  *  H  L  V  R  R  *  S  T  R  A  R  L  M  H  S  P  R  L  L  R  M  R  V  P  N  L  C  S  R  V  L  V  L  T  S  S  E  L  L  L  V  L  V  C  W  L  D  M  T  S  F  R  F  L  F  W  E  R  N  T  D  L  V  V  P  K  S  A  S  *  H  P  L  E  F  R  W  *  *  K  S  F  W  C  Y  I  *  V  F  S  W  G  D  N  Y  H  Y  S  F  C  L  F  F  L  *  *  F  E  K  S  *  S  G  S  K  L  K  N  P  T  L  V  S  L  V  E  G  L  L  L  F  C  L  G  G  P  Y  F  N  C  R  A  Y  R  F  *  M  N  L  L  I  K  S  N  A  D  Q  F  G  T  C  V  I  L  S  V  V  Y  N  I  K  H   </second_frame>
            <third_frame>   S  G  *  I  Q  I  V  G  R  P  R  S  R  D  *  K  S  N  S  Y  K  N  I  R  *  N  K  S  Q  *  N  Q  Y  I  *  Q  Y  C  V  R  R  F  N  S  I  H  P  S  F  S  S  S  S  P  R  S  S  P  L  H  E  A  S  R  T  K  :  D  F  F  K  R  C  N  D  R  Y  E  S  A  S  N  C  F  P  E  G  S  *  P  A  A  L  A  L  *  S  I  P  R  C  P  C  S  L  W  G  R  S  A  C  Y  L  P  E  A  F  C  L  W  Q  L  L  Q  C  C  S  A  E  R  P  S  H  S  G  S  I  I  D  H  L  K  C  L  T  C  V  C  A  G  S  S  R  E  R  I  C  S  F  C  H  *  L  S  H  G  W  S  F  C  C  C  I  K  D  R  C  C  P  Y  *  A  C  E  T  I  D  P  K  S  R  *  D  A  Q  G  W  *  A  V  R  T  I  Q  G  N  W  R  L  F  R  E  D  N  *  G  R  R  F  W  V  F  M  E  R  K  H  C  *  C  Y  P  L  F  P  H  S   : G  P  E  L  C  I  Q  G  L  L  Q  E  T  L  Q  L  Q  E  G  P  *  W  L  L  E  V  V  C  W  K  P  C  I  R  R  C  C  W  C  F  L  F  V  L  C  L  L  L  G  L  C  S  Y  P  S  C  *  *  C  Q  G  F  K  E  G  R  R  E  A  V  Q  W  F  G  *  C  L  Q  E  D  T  Q  I  *  W  N  C  W  S  I  P  W  I  Q  H  F  M  C  W  Y  H  C  L  P  W  F  V  L  W  N  V  R  L  L  E  A  C  P  L  D  R  K  P  A   : G  *  F  L  C  *  L  C  T  W  L  A  H  H  Q  W  C  W  S  C  F  L  P  H  *  Y  S  K  K  K  N  D  D  D  I  W  *  G  G  E  V  Q  E  L  A  *  C  I  L  P  D  C  *  E  *  G  S  Q  I  S  V  Q  G  C  W  C  *  H  P  P  S  C  C  W  C  W  C  V  G  W  I  *  Q  A  S  G  S  C  F  G  K  E  I  R  I  W  W  C  L  S  Q  P  R  N  I  L  *  N  L  D  G  D  E  N  L  F  G  V  T  F  E  Y  S  V  G  E  T  I  I  I  I  P  F  A  F  F  F  C  N  N  S  K  N  L  R  V  G  Q  S  L  K  T  P  H  S  F  P  L  L  K  G  Y  Y  C  F  V  W  A  D  L  I  S  I  A  E  L  T  D  S  E  *  I  F  *  *  N  Q  M  R  I  S  L  V  L  V  L  F  *  V  W  Y  T  I  L  S  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0245M17.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45997" stop="46196"/>
                    <exon start="47932" stop="48442"/>
                    <exon start="48560" stop="48931"/>
                    <exon start="49291" stop="49587"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1377</number_coding_nucleotides>
                  <number_encoded_amino_acids>459</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVAEYKLLGAREVGIKSQIPTKIFAKISPNKTNIYSSIAFAVSTPFTPLSHHHLLVLLLYTRRVERRTFLNVAMTDMNQHPTVFQKAANQLHLRSSLSQDVHARYGGVQPAIYQRHFAYGNYSNAALQRGQATQDLSLITSNASPVFVQAPQEKGFAAFATDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKAGRLSEPYKGIGDCFGRTIKEEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLFFVYSLDYARTRLANDAKASKKGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGNLQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQIVKNEGPKSLFKGAGANILRAVAGAGVLAGYDKLQVLVLGKKYGSGGA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0245M17.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49611" stop="49832"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLDGDENLFGVTFEYSVGETIIIIPFAFFFCNNSKNLRVGQSLKTPHSFPLLKGYYCFVWADLISIAELTDSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="45997" e_stop="46196"/>
            <exon e_start="47932" e_stop="48442"/>
            <exon e_start="48560" e_stop="48931"/>
            <exon e_start="49291" e_stop="49784"/>
            <exon e_start="51397" e_stop="51418"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.676" e_score="0.975"/>
          <exon-only e_score="0.636"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45997" e_stop="46196" e_length="200"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.957">
            <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47932" e_stop="48442" e_length="511"/>
          </exon>
          <intron i_serial="2" don_prob="0.924" acc_prob="0.931">
            <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48560" e_stop="48931" e_length="372"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.991">
            <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359"/>
          </intron>
          <exon e_serial="4" e_score="0.975">
            <gDNA_exon_boundary e_start="49291" e_stop="49784" e_length="494"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.676">
            <gDNA_intron_boundary i_start="49785" i_stop="51396" i_length="1612"/>
          </intron>
          <exon e_serial="5" e_score="0.636">
            <gDNA_exon_boundary e_start="51397" e_stop="51418" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45997" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46059" stop="46196"/>
              <exon start="47932" stop="48314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46113" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46128" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46138" stop="46196"/>
              <exon start="47932" stop="48412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46138" stop="46196"/>
              <exon start="47932" stop="48354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46139" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46140" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46140" stop="46196"/>
              <exon start="47932" stop="48354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46140" stop="46196"/>
              <exon start="47932" stop="48313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46144" stop="46196"/>
              <exon start="47932" stop="48438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46145" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46147" stop="46196"/>
              <exon start="47932" stop="48313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46148" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46148" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46151" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46152" stop="46196"/>
              <exon start="47932" stop="48418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46152" stop="46196"/>
              <exon start="47932" stop="48341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46154" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46155" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333639" strand="+"/>
          </PGS_line>
          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48272" stop="48442"/>
              <exon start="48560" stop="48927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48282" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48285" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48291" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48291" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48291" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48291" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48293" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48295" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48303" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48308" stop="48442"/>
              <exon start="48560" stop="48832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48309" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48319" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48325" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48326" stop="48442"/>
              <exon start="48560" stop="48733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48327" stop="48442"/>
              <exon start="48560" stop="48862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48331" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48333" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48343" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48350" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48351" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48376" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48383" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48403" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48414" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48563" stop="48931"/>
              <exon start="49291" stop="49524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48579" stop="48931"/>
              <exon start="49291" stop="49435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48582" stop="48931"/>
              <exon start="49291" stop="49403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48583" stop="48931"/>
              <exon start="49291" stop="49491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48592" stop="48931"/>
              <exon start="49291" stop="49396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48599" stop="48931"/>
              <exon start="49291" stop="49440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48604" stop="48931"/>
              <exon start="49291" stop="49699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371558" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48610" stop="48931"/>
              <exon start="49291" stop="49399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280470" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48619" stop="48931"/>
              <exon start="49291" stop="49777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418629" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48623" stop="48931"/>
              <exon start="49291" stop="49494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48624" stop="48931"/>
              <exon start="49291" stop="49569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48659" stop="48931"/>
              <exon start="49291" stop="49599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48660" stop="48931"/>
              <exon start="49291" stop="49536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48665" stop="48931"/>
              <exon start="49291" stop="49522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48667" stop="48931"/>
              <exon start="49291" stop="49707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48667" stop="48931"/>
              <exon start="49291" stop="49637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48667" stop="48931"/>
              <exon start="49291" stop="49636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48670" stop="48931"/>
              <exon start="49291" stop="49434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48672" stop="48931"/>
              <exon start="49291" stop="49777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576173" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48675" stop="48931"/>
              <exon start="49291" stop="49492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48701" stop="48931"/>
              <exon start="49291" stop="49665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48701" stop="48931"/>
              <exon start="49291" stop="49468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48703" stop="48931"/>
              <exon start="49291" stop="49679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48727" stop="48931"/>
              <exon start="49291" stop="49434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48744" stop="48931"/>
              <exon start="49291" stop="49752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48745" stop="48931"/>
              <exon start="49291" stop="49770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48759" stop="48931"/>
              <exon start="49291" stop="49560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48791" stop="48931"/>
              <exon start="49291" stop="49699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48793" stop="48931"/>
              <exon start="49291" stop="49638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48795" stop="48931"/>
              <exon start="49291" stop="49668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48800" stop="48931"/>
              <exon start="49291" stop="49540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216758" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48801" stop="48931"/>
              <exon start="49291" stop="49754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48801" stop="48931"/>
              <exon start="49291" stop="49720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48801" stop="48931"/>
              <exon start="49291" stop="49608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48801" stop="48931"/>
              <exon start="49291" stop="49382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48812" stop="48931"/>
              <exon start="49291" stop="49700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48854" stop="48931"/>
              <exon start="49291" stop="49748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603056" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48864" stop="48931"/>
              <exon start="49291" stop="49394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48912" stop="48931"/>
              <exon start="49291" stop="49542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49324" stop="49784"/>
              <exon start="51397" stop="51418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49347" stop="49748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49424" stop="49751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49434" stop="49592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49436" stop="49784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222251" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAGTGGCTGAATACAAATTGTTGGGCGCCCGCGAAGTAGGGATTAAAAGTCAAATTCCTACAAAAATATTCGCTAAAATAAGTCCCAATAAAACCAATATATATAGCAGTATTGCGTTCGCCGTTTCAACTCCATTCACCCCTCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG : GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG : GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG : GATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTT : GATTTGCCGAAAAATATAAAAA</gDNA_template>
            <first_frame> R  V  A  E  Y  K  L  L  G  A  R  E  V  G  I  K  S  Q  I  P  T  K  I  F  A  K  I  S  P  N  K  T  N  I  Y  S  S  I  A  F  A  V  S  T  P  F  T  P  L  S  H  H  H  L  L  V  L  L  L  Y  T  R  R  V  E  R  R :   T  F  L  N  V  A  M  T  D  M  N  Q  H  P  T  V  F  Q  K  A  A  N  Q  L  H  L  R  S  S  L  S  Q  D  V  H  A  R  Y  G  G  V  Q  P  A  I  Y  Q  R  H  F  A  Y  G  N  Y  S  N  A  A  L  Q  R  G  Q  A  T  Q  D  L  S  L  I  T  S  N  A  S  P  V  F  V  Q  A  P  Q  E  K  G  F  A  A  F  A  T  D  F  L  M  G  G  V  S  A  A  V  S  K  T  A  A  A  P  I  E  R  V  K  L  L  I  Q  N  Q  D  E  M  L  K  A  G  R  L  S  E  P  Y  K  G  I  G  D  C  F  G  R  T  I  K  E  E  G  F  G  S  L  W  R  G  N  T  A  N  V  I  R  Y  F  P  T  Q  :  A  L  N  F  A  F  K  D  Y  F  K  R  L  F  N  F  K  K  D  R  D  G  Y  W  K  W  F  A  G  N  L  A  S  G  G  A  A  G  A  S  S  L  F  F  V  Y  S  L  D  Y  A  R  T  R  L  A  N  D  A  K  A  S  K  K  G  G  E  R  Q  F  N  G  L  V  D  V  Y  R  K  T  L  K  S  D  G  I  A  G  L  Y  R  G  F  N  I  S  C  V  G  I  I  V  Y  R  G  L  Y  F  G  M  Y  D  S  L  K  P  V  L  L  T  G  N  L  Q  :  D  S  F  F  A  S  F  A  L  G  W  L  I  T  N  G  A  G  L  A  S  Y  P  I  D  T  V  R  R  R  M  M  M  T  S  G  E  A  V  K  Y  K  S  S  L  D  A  F  S  Q  I  V  K  N  E  G  P  K  S  L  F  K  G  A  G  A  N  I  L  R  A  V  A  G  A  G  V  L  A  G  Y  D  K  L  Q  V  L  V  L  G  K  K  Y  G  S  G  G  A  *  V  S  L  V  T  S  F  R  I  *  M  V  M  K  I  F  L  V  L  H  L  S  I  Q  L  G  R  Q  L  S  L  F  L  L  P  F  F  F  V  I  I  R  K  I  L  E  W  V  K  A  *  K  P  H  T  R  F  P  C  *  R  V  I  T  V  L :   I  C  R  K  I  *  K </first_frame>
            <second_frame>  E  W  L  N  T  N  C  W  A  P  A  K  *  G  L  K  V  K  F  L  Q  K  Y  S  L  K  *  V  P  I  K  P  I  Y  I  A  V  L  R  S  P  F  Q  L  H  S  P  L  F  L  I  I  I  S  S  F  F  S  S  T  R  G  E  S  N  E   : G  L  F  *  T  L  Q  *  Q  I  *  I  S  I  Q  L  F  S  R  R  Q  L  T  S  C  T  C  A  L  V  Y  P  K  M  S  M  L  A  M  G  A  F  S  L  L  S  T  R  G  I  L  L  M  A  T  T  P  M  L  L  C  R  E  A  K  P  L  R  I  Y  H  *  S  P  Q  M  P  H  L  C  L  C  R  L  L  K  R  K  D  L  Q  L  L  P  L  T  F  S  W  V  E  F  L  L  L  Y  Q  R  P  L  L  P  L  L  S  V  *  N  Y  *  S  K  I  K  M  R  C  S  R  L  V  G  C  Q  N  H  T  R  E  L  A  I  V  S  G  G  Q  L  R  K  K  V  L  G  L  Y  G  E  E  T  L  L  M  L  S  V  I  S  P  L  R :   P  *  T  L  H  S  R  T  T  S  R  D  S  S  T  S  R  R  T  V  M  A  T  G  S  G  L  L  E  T  L  H  Q  E  V  L  L  V  L  P  L  C  S  L  S  T  P  W  T  M  L  V  P  V  L  L  M  M  P  R  L  Q  R  R  E  A  R  G  S  S  M  V  W  L  M  S  T  G  R  H  S  N  L  M  E  L  L  V  Y  T  V  D  S  T  F  H  V  L  V  S  L  F  T  V  V  C  T  L  E  C  T  T  P  *  S  L  S  S  *  Q  E  T  C  R :   I  V  S  L  L  A  L  H  L  V  G  S  S  P  M  V  L  V  L  L  L  T  P  L  I  Q  *  E  E  E  *  *  *  H  L  V  R  R  *  S  T  R  A  R  L  M  H  S  P  R  L  L  R  M  R  V  P  N  L  C  S  R  V  L  V  L  T  S  S  E  L  L  L  V  L  V  C  W  L  D  M  T  S  F  R  F  L  F  W  E  R  N  T  D  L  V  V  P  K  S  A  S  *  H  P  L  E  F  R  W  *  *  K  S  F  W  C  Y  I  *  V  F  S  W  G  D  N  Y  H  Y  S  F  C  L  F  F  L  *  *  F  E  K  S  *  S  G  S  K  L  K  N  P  T  L  V  S  L  V  E  G  L  L  L  F   : *  F  A  E  K  Y  K   </second_frame>
            <third_frame>   S  G  *  I  Q  I  V  G  R  P  R  S  R  D  *  K  S  N  S  Y  K  N  I  R  *  N  K  S  Q  *  N  Q  Y  I  *  Q  Y  C  V  R  R  F  N  S  I  H  P  S  F  S  S  S  S  P  R  S  S  P  L  H  E  A  S  R  T  K  :  D  F  F  K  R  C  N  D  R  Y  E  S  A  S  N  C  F  P  E  G  S  *  P  A  A  L  A  L  *  S  I  P  R  C  P  C  S  L  W  G  R  S  A  C  Y  L  P  E  A  F  C  L  W  Q  L  L  Q  C  C  S  A  E  R  P  S  H  S  G  S  I  I  D  H  L  K  C  L  T  C  V  C  A  G  S  S  R  E  R  I  C  S  F  C  H  *  L  S  H  G  W  S  F  C  C  C  I  K  D  R  C  C  P  Y  *  A  C  E  T  I  D  P  K  S  R  *  D  A  Q  G  W  *  A  V  R  T  I  Q  G  N  W  R  L  F  R  E  D  N  *  G  R  R  F  W  V  F  M  E  R  K  H  C  *  C  Y  P  L  F  P  H  S   : G  P  E  L  C  I  Q  G  L  L  Q  E  T  L  Q  L  Q  E  G  P  *  W  L  L  E  V  V  C  W  K  P  C  I  R  R  C  C  W  C  F  L  F  V  L  C  L  L  L  G  L  C  S  Y  P  S  C  *  *  C  Q  G  F  K  E  G  R  R  E  A  V  Q  W  F  G  *  C  L  Q  E  D  T  Q  I  *  W  N  C  W  S  I  P  W  I  Q  H  F  M  C  W  Y  H  C  L  P  W  F  V  L  W  N  V  R  L  L  E  A  C  P  L  D  R  K  P  A   : G  *  F  L  C  *  L  C  T  W  L  A  H  H  Q  W  C  W  S  C  F  L  P  H  *  Y  S  K  K  K  N  D  D  D  I  W  *  G  G  E  V  Q  E  L  A  *  C  I  L  P  D  C  *  E  *  G  S  Q  I  S  V  Q  G  C  W  C  *  H  P  P  S  C  C  W  C  W  C  V  G  W  I  *  Q  A  S  G  S  C  F  G  K  E  I  R  I  W  W  C  L  S  Q  P  R  N  I  L  *  N  L  D  G  D  E  N  L  F  G  V  T  F  E  Y  S  V  G  E  T  I  I  I  I  P  F  A  F  F  F  C  N  N  S  K  N  L  R  V  G  Q  S  L  K  T  P  H  S  F  P  L  L  K  G  Y  Y  C  F  :  D  L  P  K  N  I  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0245M17.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45997" stop="46196"/>
                    <exon start="47932" stop="48442"/>
                    <exon start="48560" stop="48931"/>
                    <exon start="49291" stop="49587"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1377</number_coding_nucleotides>
                  <number_encoded_amino_acids>459</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVAEYKLLGAREVGIKSQIPTKIFAKISPNKTNIYSSIAFAVSTPFTPLSHHHLLVLLLYTRRVERRTFLNVAMTDMNQHPTVFQKAANQLHLRSSLSQDVHARYGGVQPAIYQRHFAYGNYSNAALQRGQATQDLSLITSNASPVFVQAPQEKGFAAFATDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKAGRLSEPYKGIGDCFGRTIKEEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLFFVYSLDYARTRLANDAKASKKGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGNLQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQIVKNEGPKSLFKGAGANILRAVAGAGVLAGYDKLQVLVLGKKYGSGGA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0245M17.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49611" stop="49784"/>
                    <exon start="51397" stop="51417"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLDGDENLFGVTFEYSVGETIIIIPFAFFFCNNSKNLRVGQSLKTPHSFPLLKGYYCFDLPKNIK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="45997" e_stop="46196"/>
            <exon e_start="47932" e_stop="48442"/>
            <exon e_start="48560" e_stop="48931"/>
            <exon e_start="49291" e_stop="49750"/>
            <exon e_start="50923" e_stop="50947"/>
            <exon e_start="51239" e_stop="51277"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.979"/>
          <exon-intron don_prob="0.222" acc_prob="0.000" e_score="0.840"/>
          <exon-only e_score="0.744"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45997" e_stop="46196" e_length="200"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.957">
            <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47932" e_stop="48442" e_length="511"/>
          </exon>
          <intron i_serial="2" don_prob="0.924" acc_prob="0.931">
            <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48560" e_stop="48931" e_length="372"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.991">
            <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359"/>
          </intron>
          <exon e_serial="4" e_score="0.979">
            <gDNA_exon_boundary e_start="49291" e_stop="49750" e_length="460"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49751" i_stop="50922" i_length="1172"/>
          </intron>
          <exon e_serial="5" e_score="0.840">
            <gDNA_exon_boundary e_start="50923" e_stop="50947" e_length="25"/>
          </exon>
          <intron i_serial="5" don_prob="0.222" acc_prob="0.000">
            <gDNA_intron_boundary i_start="50948" i_stop="51238" i_length="291"/>
          </intron>
          <exon e_serial="6" e_score="0.744">
            <gDNA_exon_boundary e_start="51239" e_stop="51277" e_length="39"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45997" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46059" stop="46196"/>
              <exon start="47932" stop="48314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46113" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46128" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46138" stop="46196"/>
              <exon start="47932" stop="48412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46138" stop="46196"/>
              <exon start="47932" stop="48354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46139" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46140" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46140" stop="46196"/>
              <exon start="47932" stop="48354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46140" stop="46196"/>
              <exon start="47932" stop="48313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46144" stop="46196"/>
              <exon start="47932" stop="48438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46145" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46147" stop="46196"/>
              <exon start="47932" stop="48313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46148" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46148" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46151" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46152" stop="46196"/>
              <exon start="47932" stop="48418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46152" stop="46196"/>
              <exon start="47932" stop="48341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46154" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46155" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46155" stop="46196"/>
              <exon start="47932" stop="48370"/>
            </gDNA_exon_coordinates>
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            <gDNA_exon_coordinates>
              <exon start="48272" stop="48442"/>
              <exon start="48560" stop="48927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48282" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48285" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48291" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48291" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48291" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48291" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48293" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48295" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48303" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48308" stop="48442"/>
              <exon start="48560" stop="48832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48309" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48319" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48325" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48326" stop="48442"/>
              <exon start="48560" stop="48733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48327" stop="48442"/>
              <exon start="48560" stop="48862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48331" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48333" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48343" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48350" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48351" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48376" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48383" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48403" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48414" stop="48442"/>
              <exon start="48560" stop="48931"/>
              <exon start="49291" stop="49520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48563" stop="48931"/>
              <exon start="49291" stop="49524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48579" stop="48931"/>
              <exon start="49291" stop="49435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48582" stop="48931"/>
              <exon start="49291" stop="49403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48583" stop="48931"/>
              <exon start="49291" stop="49491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48592" stop="48931"/>
              <exon start="49291" stop="49396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48599" stop="48931"/>
              <exon start="49291" stop="49440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48604" stop="48931"/>
              <exon start="49291" stop="49699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371558" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48610" stop="48931"/>
              <exon start="49291" stop="49399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280470" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48623" stop="48931"/>
              <exon start="49291" stop="49494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48624" stop="48931"/>
              <exon start="49291" stop="49569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48659" stop="48931"/>
              <exon start="49291" stop="49599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48660" stop="48931"/>
              <exon start="49291" stop="49536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48665" stop="48931"/>
              <exon start="49291" stop="49522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48667" stop="48931"/>
              <exon start="49291" stop="49707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48667" stop="48931"/>
              <exon start="49291" stop="49637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48667" stop="48931"/>
              <exon start="49291" stop="49636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48670" stop="48931"/>
              <exon start="49291" stop="49434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48675" stop="48931"/>
              <exon start="49291" stop="49492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48701" stop="48931"/>
              <exon start="49291" stop="49665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48701" stop="48931"/>
              <exon start="49291" stop="49468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48703" stop="48931"/>
              <exon start="49291" stop="49679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48727" stop="48931"/>
              <exon start="49291" stop="49434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48759" stop="48931"/>
              <exon start="49291" stop="49560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48791" stop="48931"/>
              <exon start="49291" stop="49699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48793" stop="48931"/>
              <exon start="49291" stop="49638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48795" stop="48931"/>
              <exon start="49291" stop="49668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48800" stop="48931"/>
              <exon start="49291" stop="49540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216758" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48801" stop="48931"/>
              <exon start="49291" stop="49720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48801" stop="48931"/>
              <exon start="49291" stop="49608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48801" stop="48931"/>
              <exon start="49291" stop="49382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48812" stop="48931"/>
              <exon start="49291" stop="49700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48854" stop="48931"/>
              <exon start="49291" stop="49748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603056" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48864" stop="48931"/>
              <exon start="49291" stop="49394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48912" stop="48931"/>
              <exon start="49291" stop="49542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49347" stop="49748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49434" stop="49592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49472" stop="49750"/>
              <exon start="50923" stop="50947"/>
              <exon start="51239" stop="51277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236251" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAGTGGCTGAATACAAATTGTTGGGCGCCCGCGAAGTAGGGATTAAAAGTCAAATTCCTACAAAAATATTCGCTAAAATAAGTCCCAATAAAACCAATATATATAGCAGTATTGCGTTCGCCGTTTCAACTCCATTCACCCCTCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG : GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG : GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG : GATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACA : AAAAAAATAGAAAAATATGAAAAAA : AAATAAAAAATAGGAAAATATGAAAAAAATATAAAATAA</gDNA_template>
            <first_frame> R  V  A  E  Y  K  L  L  G  A  R  E  V  G  I  K  S  Q  I  P  T  K  I  F  A  K  I  S  P  N  K  T  N  I  Y  S  S  I  A  F  A  V  S  T  P  F  T  P  L  S  H  H  H  L  L  V  L  L  L  Y  T  R  R  V  E  R  R :   T  F  L  N  V  A  M  T  D  M  N  Q  H  P  T  V  F  Q  K  A  A  N  Q  L  H  L  R  S  S  L  S  Q  D  V  H  A  R  Y  G  G  V  Q  P  A  I  Y  Q  R  H  F  A  Y  G  N  Y  S  N  A  A  L  Q  R  G  Q  A  T  Q  D  L  S  L  I  T  S  N  A  S  P  V  F  V  Q  A  P  Q  E  K  G  F  A  A  F  A  T  D  F  L  M  G  G  V  S  A  A  V  S  K  T  A  A  A  P  I  E  R  V  K  L  L  I  Q  N  Q  D  E  M  L  K  A  G  R  L  S  E  P  Y  K  G  I  G  D  C  F  G  R  T  I  K  E  E  G  F  G  S  L  W  R  G  N  T  A  N  V  I  R  Y  F  P  T  Q  :  A  L  N  F  A  F  K  D  Y  F  K  R  L  F  N  F  K  K  D  R  D  G  Y  W  K  W  F  A  G  N  L  A  S  G  G  A  A  G  A  S  S  L  F  F  V  Y  S  L  D  Y  A  R  T  R  L  A  N  D  A  K  A  S  K  K  G  G  E  R  Q  F  N  G  L  V  D  V  Y  R  K  T  L  K  S  D  G  I  A  G  L  Y  R  G  F  N  I  S  C  V  G  I  I  V  Y  R  G  L  Y  F  G  M  Y  D  S  L  K  P  V  L  L  T  G  N  L  Q  :  D  S  F  F  A  S  F  A  L  G  W  L  I  T  N  G  A  G  L  A  S  Y  P  I  D  T  V  R  R  R  M  M  M  T  S  G  E  A  V  K  Y  K  S  S  L  D  A  F  S  Q  I  V  K  N  E  G  P  K  S  L  F  K  G  A  G  A  N  I  L  R  A  V  A  G  A  G  V  L  A  G  Y  D  K  L  Q  V  L  V  L  G  K  K  Y  G  S  G  G  A  *  V  S  L  V  T  S  F  R  I  *  M  V  M  K  I  F  L  V  L  H  L  S  I  Q  L  G  R  Q  L  S  L  F  L  L  P  F  F  F  V  I  I  R  K  I  L  E  W  V  K  A  *  K  P  H   : K  K  N  R  K  I  *  K  K :   N  K  K  *  E  N  M  K  K  I  *  N   </first_frame>
            <second_frame>  E  W  L  N  T  N  C  W  A  P  A  K  *  G  L  K  V  K  F  L  Q  K  Y  S  L  K  *  V  P  I  K  P  I  Y  I  A  V  L  R  S  P  F  Q  L  H  S  P  L  F  L  I  I  I  S  S  F  F  S  S  T  R  G  E  S  N  E   : G  L  F  *  T  L  Q  *  Q  I  *  I  S  I  Q  L  F  S  R  R  Q  L  T  S  C  T  C  A  L  V  Y  P  K  M  S  M  L  A  M  G  A  F  S  L  L  S  T  R  G  I  L  L  M  A  T  T  P  M  L  L  C  R  E  A  K  P  L  R  I  Y  H  *  S  P  Q  M  P  H  L  C  L  C  R  L  L  K  R  K  D  L  Q  L  L  P  L  T  F  S  W  V  E  F  L  L  L  Y  Q  R  P  L  L  P  L  L  S  V  *  N  Y  *  S  K  I  K  M  R  C  S  R  L  V  G  C  Q  N  H  T  R  E  L  A  I  V  S  G  G  Q  L  R  K  K  V  L  G  L  Y  G  E  E  T  L  L  M  L  S  V  I  S  P  L  R :   P  *  T  L  H  S  R  T  T  S  R  D  S  S  T  S  R  R  T  V  M  A  T  G  S  G  L  L  E  T  L  H  Q  E  V  L  L  V  L  P  L  C  S  L  S  T  P  W  T  M  L  V  P  V  L  L  M  M  P  R  L  Q  R  R  E  A  R  G  S  S  M  V  W  L  M  S  T  G  R  H  S  N  L  M  E  L  L  V  Y  T  V  D  S  T  F  H  V  L  V  S  L  F  T  V  V  C  T  L  E  C  T  T  P  *  S  L  S  S  *  Q  E  T  C  R :   I  V  S  L  L  A  L  H  L  V  G  S  S  P  M  V  L  V  L  L  L  T  P  L  I  Q  *  E  E  E  *  *  *  H  L  V  R  R  *  S  T  R  A  R  L  M  H  S  P  R  L  L  R  M  R  V  P  N  L  C  S  R  V  L  V  L  T  S  S  E  L  L  L  V  L  V  C  W  L  D  M  T  S  F  R  F  L  F  W  E  R  N  T  D  L  V  V  P  K  S  A  S  *  H  P  L  E  F  R  W  *  *  K  S  F  W  C  Y  I  *  V  F  S  W  G  D  N  Y  H  Y  S  F  C  L  F  F  L  *  *  F  E  K  S  *  S  G  S  K  L  K  N  P  T  :  K  K  I  E  K  Y  E  K   : K  I  K  N  R  K  I  *  K  K  Y  K  I  </second_frame>
            <third_frame>   S  G  *  I  Q  I  V  G  R  P  R  S  R  D  *  K  S  N  S  Y  K  N  I  R  *  N  K  S  Q  *  N  Q  Y  I  *  Q  Y  C  V  R  R  F  N  S  I  H  P  S  F  S  S  S  S  P  R  S  S  P  L  H  E  A  S  R  T  K  :  D  F  F  K  R  C  N  D  R  Y  E  S  A  S  N  C  F  P  E  G  S  *  P  A  A  L  A  L  *  S  I  P  R  C  P  C  S  L  W  G  R  S  A  C  Y  L  P  E  A  F  C  L  W  Q  L  L  Q  C  C  S  A  E  R  P  S  H  S  G  S  I  I  D  H  L  K  C  L  T  C  V  C  A  G  S  S  R  E  R  I  C  S  F  C  H  *  L  S  H  G  W  S  F  C  C  C  I  K  D  R  C  C  P  Y  *  A  C  E  T  I  D  P  K  S  R  *  D  A  Q  G  W  *  A  V  R  T  I  Q  G  N  W  R  L  F  R  E  D  N  *  G  R  R  F  W  V  F  M  E  R  K  H  C  *  C  Y  P  L  F  P  H  S   : G  P  E  L  C  I  Q  G  L  L  Q  E  T  L  Q  L  Q  E  G  P  *  W  L  L  E  V  V  C  W  K  P  C  I  R  R  C  C  W  C  F  L  F  V  L  C  L  L  L  G  L  C  S  Y  P  S  C  *  *  C  Q  G  F  K  E  G  R  R  E  A  V  Q  W  F  G  *  C  L  Q  E  D  T  Q  I  *  W  N  C  W  S  I  P  W  I  Q  H  F  M  C  W  Y  H  C  L  P  W  F  V  L  W  N  V  R  L  L  E  A  C  P  L  D  R  K  P  A   : G  *  F  L  C  *  L  C  T  W  L  A  H  H  Q  W  C  W  S  C  F  L  P  H  *  Y  S  K  K  K  N  D  D  D  I  W  *  G  G  E  V  Q  E  L  A  *  C  I  L  P  D  C  *  E  *  G  S  Q  I  S  V  Q  G  C  W  C  *  H  P  P  S  C  C  W  C  W  C  V  G  W  I  *  Q  A  S  G  S  C  F  G  K  E  I  R  I  W  W  C  L  S  Q  P  R  N  I  L  *  N  L  D  G  D  E  N  L  F  G  V  T  F  E  Y  S  V  G  E  T  I  I  I  I  P  F  A  F  F  F  C  N  N  S  K  N  L  R  V  G  Q  S  L  K  T  P  Q :   K  K  *  K  N  M  K  K  :  K  *  K  I  G  K  Y  E  K  N  I  K  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0245M17.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45997" stop="46196"/>
                    <exon start="47932" stop="48442"/>
                    <exon start="48560" stop="48931"/>
                    <exon start="49291" stop="49587"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1377</number_coding_nucleotides>
                  <number_encoded_amino_acids>459</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVAEYKLLGAREVGIKSQIPTKIFAKISPNKTNIYSSIAFAVSTPFTPLSHHHLLVLLLYTRRVERRTFLNVAMTDMNQHPTVFQKAANQLHLRSSLSQDVHARYGGVQPAIYQRHFAYGNYSNAALQRGQATQDLSLITSNASPVFVQAPQEKGFAAFATDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKAGRLSEPYKGIGDCFGRTIKEEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLFFVYSLDYARTRLANDAKASKKGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGNLQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQIVKNEGPKSLFKGAGANILRAVAGAGVLAGYDKLQVLVLGKKYGSGGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="45997" e_stop="46196"/>
            <exon e_start="47932" e_stop="48442"/>
            <exon e_start="48560" e_stop="49026"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.931" e_score="1.000"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45997" e_stop="46196" e_length="200"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.957">
            <gDNA_intron_boundary i_start="46197" i_stop="47931" i_length="1735"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47932" e_stop="48442" e_length="511"/>
          </exon>
          <intron i_serial="2" don_prob="0.924" acc_prob="0.931">
            <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117"/>
          </intron>
          <exon e_serial="3" e_score="0.958">
            <gDNA_exon_boundary e_start="48560" e_stop="49026" e_length="467"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45997" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46059" stop="46196"/>
              <exon start="47932" stop="48314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46113" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46128" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46138" stop="46196"/>
              <exon start="47932" stop="48412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46138" stop="46196"/>
              <exon start="47932" stop="48354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46139" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46140" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46140" stop="46196"/>
              <exon start="47932" stop="48354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46140" stop="46196"/>
              <exon start="47932" stop="48313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46144" stop="46196"/>
              <exon start="47932" stop="48438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46145" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46147" stop="46196"/>
              <exon start="47932" stop="48313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46148" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46148" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46151" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46152" stop="46196"/>
              <exon start="47932" stop="48418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46152" stop="46196"/>
              <exon start="47932" stop="48341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46154" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46155" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46155" stop="46196"/>
              <exon start="47932" stop="48370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46156" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46157" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46159" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46159" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46159" stop="46196"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46159" stop="46196"/>
              <exon start="47932" stop="48327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46160" stop="46196"/>
              <exon start="47932" stop="48354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316675" strand="+"/>
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            <gDNA_exon_coordinates>
              <exon start="46182" stop="46196"/>
              <exon start="47932" stop="48315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46182" stop="46196"/>
              <exon start="47932" stop="48315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46182" stop="46196"/>
              <exon start="47932" stop="48314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46182" stop="46196"/>
              <exon start="47932" stop="48314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46182" stop="46196"/>
              <exon start="47932" stop="48313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46182" stop="46196"/>
              <exon start="47932" stop="48313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46182" stop="46196"/>
              <exon start="47932" stop="48298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46182" stop="46196"/>
              <exon start="47932" stop="48296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46182" stop="46196"/>
              <exon start="47932" stop="48292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46182" stop="46196"/>
              <exon start="47932" stop="48288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46182" stop="46196"/>
              <exon start="47932" stop="48271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46182" stop="46196"/>
              <exon start="47932" stop="48229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46182" stop="46196"/>
              <exon start="47932" stop="48091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47934" stop="48442"/>
              <exon start="48560" stop="48608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47934" stop="48298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47935" stop="48356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47956" stop="48442"/>
              <exon start="48560" stop="48656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47958" stop="48439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47966" stop="48442"/>
              <exon start="48560" stop="48608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47967" stop="48442"/>
              <exon start="48560" stop="48565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47969" stop="48378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47970" stop="48299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47973" stop="48442"/>
              <exon start="48560" stop="48927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47985" stop="48442"/>
              <exon start="48560" stop="48721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48002" stop="48421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48002" stop="48314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48003" stop="48442"/>
              <exon start="48560" stop="48735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48003" stop="48339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48021" stop="48298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48024" stop="48442"/>
              <exon start="48560" stop="48891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48024" stop="48348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48025" stop="48442"/>
              <exon start="48560" stop="48735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48034" stop="48442"/>
              <exon start="48560" stop="48735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48036" stop="48418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48042" stop="48436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48058" stop="48442"/>
              <exon start="48560" stop="48837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48061" stop="48442"/>
              <exon start="48560" stop="48737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48066" stop="48442"/>
              <exon start="48560" stop="48848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48076" stop="48314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48084" stop="48442"/>
              <exon start="48560" stop="48780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48087" stop="48442"/>
              <exon start="48560" stop="48652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279295" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48092" stop="48442"/>
              <exon start="48560" stop="48733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48100" stop="48412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48130" stop="48442"/>
              <exon start="48560" stop="48860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48134" stop="48296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48152" stop="48442"/>
              <exon start="48560" stop="48829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48153" stop="48442"/>
              <exon start="48560" stop="48916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48201" stop="48442"/>
              <exon start="48560" stop="48901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48223" stop="48442"/>
              <exon start="48560" stop="48671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48238" stop="48442"/>
              <exon start="48560" stop="48791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48272" stop="48442"/>
              <exon start="48560" stop="48927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48308" stop="48442"/>
              <exon start="48560" stop="48832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48326" stop="48442"/>
              <exon start="48560" stop="48733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48327" stop="48442"/>
              <exon start="48560" stop="48862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48572" stop="49026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281621" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAGTGGCTGAATACAAATTGTTGGGCGCCCGCGAAGTAGGGATTAAAAGTCAAATTCCTACAAAAATATTCGCTAAAATAAGTCCCAATAAAACCAATATATATAGCAGTATTGCGTTCGCCGTTTCAACTCCATTCACCCCTCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAGGCGAGTCGAACGAAG : GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG : GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAGGTTATATGTTTGCTTTGCTCTGCTTTTTCATGTCTTTATACTTCTCTGGATGTTATCTCTGCTGTGTCTTACCAAAATGTTGTTAGTCTTTACCA</gDNA_template>
            <first_frame> R  V  A  E  Y  K  L  L  G  A  R  E  V  G  I  K  S  Q  I  P  T  K  I  F  A  K  I  S  P  N  K  T  N  I  Y  S  S  I  A  F  A  V  S  T  P  F  T  P  L  S  H  H  H  L  L  V  L  L  L  Y  T  R  R  V  E  R  R :   T  F  L  N  V  A  M  T  D  M  N  Q  H  P  T  V  F  Q  K  A  A  N  Q  L  H  L  R  S  S  L  S  Q  D  V  H  A  R  Y  G  G  V  Q  P  A  I  Y  Q  R  H  F  A  Y  G  N  Y  S  N  A  A  L  Q  R  G  Q  A  T  Q  D  L  S  L  I  T  S  N  A  S  P  V  F  V  Q  A  P  Q  E  K  G  F  A  A  F  A  T  D  F  L  M  G  G  V  S  A  A  V  S  K  T  A  A  A  P  I  E  R  V  K  L  L  I  Q  N  Q  D  E  M  L  K  A  G  R  L  S  E  P  Y  K  G  I  G  D  C  F  G  R  T  I  K  E  E  G  F  G  S  L  W  R  G  N  T  A  N  V  I  R  Y  F  P  T  Q  :  A  L  N  F  A  F  K  D  Y  F  K  R  L  F  N  F  K  K  D  R  D  G  Y  W  K  W  F  A  G  N  L  A  S  G  G  A  A  G  A  S  S  L  F  F  V  Y  S  L  D  Y  A  R  T  R  L  A  N  D  A  K  A  S  K  K  G  G  E  R  Q  F  N  G  L  V  D  V  Y  R  K  T  L  K  S  D  G  I  A  G  L  Y  R  G  F  N  I  S  C  V  G  I  I  V  Y  R  G  L  Y  F  G  M  Y  D  S  L  K  P  V  L  L  T  G  N  L  Q  V  I  C  L  L  C  S  A  F  S  C  L  Y  T  S  L  D  V  I  S  A  V  S  Y  Q  N  V  V  S  L  Y   </first_frame>
            <second_frame>  E  W  L  N  T  N  C  W  A  P  A  K  *  G  L  K  V  K  F  L  Q  K  Y  S  L  K  *  V  P  I  K  P  I  Y  I  A  V  L  R  S  P  F  Q  L  H  S  P  L  F  L  I  I  I  S  S  F  F  S  S  T  R  G  E  S  N  E   : G  L  F  *  T  L  Q  *  Q  I  *  I  S  I  Q  L  F  S  R  R  Q  L  T  S  C  T  C  A  L  V  Y  P  K  M  S  M  L  A  M  G  A  F  S  L  L  S  T  R  G  I  L  L  M  A  T  T  P  M  L  L  C  R  E  A  K  P  L  R  I  Y  H  *  S  P  Q  M  P  H  L  C  L  C  R  L  L  K  R  K  D  L  Q  L  L  P  L  T  F  S  W  V  E  F  L  L  L  Y  Q  R  P  L  L  P  L  L  S  V  *  N  Y  *  S  K  I  K  M  R  C  S  R  L  V  G  C  Q  N  H  T  R  E  L  A  I  V  S  G  G  Q  L  R  K  K  V  L  G  L  Y  G  E  E  T  L  L  M  L  S  V  I  S  P  L  R :   P  *  T  L  H  S  R  T  T  S  R  D  S  S  T  S  R  R  T  V  M  A  T  G  S  G  L  L  E  T  L  H  Q  E  V  L  L  V  L  P  L  C  S  L  S  T  P  W  T  M  L  V  P  V  L  L  M  M  P  R  L  Q  R  R  E  A  R  G  S  S  M  V  W  L  M  S  T  G  R  H  S  N  L  M  E  L  L  V  Y  T  V  D  S  T  F  H  V  L  V  S  L  F  T  V  V  C  T  L  E  C  T  T  P  *  S  L  S  S  *  Q  E  T  C  R  L  Y  V  C  F  A  L  L  F  H  V  F  I  L  L  W  M  L  S  L  L  C  L  T  K  M  L  L  V  F  T  </second_frame>
            <third_frame>   S  G  *  I  Q  I  V  G  R  P  R  S  R  D  *  K  S  N  S  Y  K  N  I  R  *  N  K  S  Q  *  N  Q  Y  I  *  Q  Y  C  V  R  R  F  N  S  I  H  P  S  F  S  S  S  S  P  R  S  S  P  L  H  E  A  S  R  T  K  :  D  F  F  K  R  C  N  D  R  Y  E  S  A  S  N  C  F  P  E  G  S  *  P  A  A  L  A  L  *  S  I  P  R  C  P  C  S  L  W  G  R  S  A  C  Y  L  P  E  A  F  C  L  W  Q  L  L  Q  C  C  S  A  E  R  P  S  H  S  G  S  I  I  D  H  L  K  C  L  T  C  V  C  A  G  S  S  R  E  R  I  C  S  F  C  H  *  L  S  H  G  W  S  F  C  C  C  I  K  D  R  C  C  P  Y  *  A  C  E  T  I  D  P  K  S  R  *  D  A  Q  G  W  *  A  V  R  T  I  Q  G  N  W  R  L  F  R  E  D  N  *  G  R  R  F  W  V  F  M  E  R  K  H  C  *  C  Y  P  L  F  P  H  S   : G  P  E  L  C  I  Q  G  L  L  Q  E  T  L  Q  L  Q  E  G  P  *  W  L  L  E  V  V  C  W  K  P  C  I  R  R  C  C  W  C  F  L  F  V  L  C  L  L  L  G  L  C  S  Y  P  S  C  *  *  C  Q  G  F  K  E  G  R  R  E  A  V  Q  W  F  G  *  C  L  Q  E  D  T  Q  I  *  W  N  C  W  S  I  P  W  I  Q  H  F  M  C  W  Y  H  C  L  P  W  F  V  L  W  N  V  R  L  L  E  A  C  P  L  D  R  K  P  A  G  Y  M  F  A  L  L  C  F  F  M  S  L  Y  F  S  G  C  Y  L  C  C  V  L  P  K  C  C  *  S  L  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0245M17.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45997" stop="46196"/>
                    <exon start="47932" stop="48442"/>
                    <exon start="48560" stop="49024"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1176</number_coding_nucleotides>
                  <number_encoded_amino_acids>392</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVAEYKLLGAREVGIKSQIPTKIFAKISPNKTNIYSSIAFAVSTPFTPLSHHHLLVLLLYTRRVERRTFLNVAMTDMNQHPTVFQKAANQLHLRSSLSQDVHARYGGVQPAIYQRHFAYGNYSNAALQRGQATQDLSLITSNASPVFVQAPQEKGFAAFATDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKAGRLSEPYKGIGDCFGRTIKEEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLFFVYSLDYARTRLANDAKASKKGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGNLQVICLLCSAFSCLYTSLDVISAVSYQNVVSLY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="46087" e_stop="46181"/>
            <exon e_start="46823" e_stop="46834"/>
            <exon e_start="47801" e_stop="47815"/>
            <exon e_start="47932" e_stop="48442"/>
            <exon e_start="48560" e_stop="48931"/>
            <exon e_start="49291" e_stop="49908"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.698" e_score="0.905"/>
          <exon-intron don_prob="0.628" acc_prob="0.768" e_score="0.500"/>
          <exon-intron don_prob="0.548" acc_prob="0.957" e_score="0.625"/>
          <exon-intron don_prob="0.924" acc_prob="0.931" e_score="0.982"/>
          <exon-intron don_prob="0.995" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="46087" e_stop="46181" e_length="95"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.698">
            <gDNA_intron_boundary i_start="46182" i_stop="46822" i_length="641"/>
          </intron>
          <exon e_serial="2" e_score="0.500">
            <gDNA_exon_boundary e_start="46823" e_stop="46834" e_length="12"/>
          </exon>
          <intron i_serial="2" don_prob="0.628" acc_prob="0.768">
            <gDNA_intron_boundary i_start="46835" i_stop="47800" i_length="966"/>
          </intron>
          <exon e_serial="3" e_score="0.625">
            <gDNA_exon_boundary e_start="47801" e_stop="47815" e_length="15"/>
          </exon>
          <intron i_serial="3" don_prob="0.548" acc_prob="0.957">
            <gDNA_intron_boundary i_start="47816" i_stop="47931" i_length="116"/>
          </intron>
          <exon e_serial="4" e_score="0.982">
            <gDNA_exon_boundary e_start="47932" e_stop="48442" e_length="511"/>
          </exon>
          <intron i_serial="4" don_prob="0.924" acc_prob="0.931">
            <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="48560" e_stop="48931" e_length="372"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.991">
            <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359"/>
          </intron>
          <exon e_serial="6" e_score="0.971">
            <gDNA_exon_boundary e_start="49291" e_stop="49908" e_length="618"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46087" stop="46181"/>
              <exon start="46823" stop="46834"/>
              <exon start="47801" stop="47815"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46100" stop="46181"/>
              <exon start="46823" stop="46834"/>
              <exon start="47801" stop="47815"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46109" stop="46181"/>
              <exon start="46823" stop="46834"/>
              <exon start="47801" stop="47815"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46139" stop="46181"/>
              <exon start="46823" stop="46834"/>
              <exon start="47801" stop="47815"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46140" stop="46181"/>
              <exon start="46823" stop="46834"/>
              <exon start="47801" stop="47815"/>
              <exon start="47932" stop="48158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46141" stop="46181"/>
              <exon start="46823" stop="46834"/>
              <exon start="47801" stop="47815"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46141" stop="46181"/>
              <exon start="46823" stop="46834"/>
              <exon start="47801" stop="47815"/>
              <exon start="47932" stop="48372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46141" stop="46181"/>
              <exon start="46823" stop="46834"/>
              <exon start="47801" stop="47815"/>
              <exon start="47932" stop="48233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46143" stop="46181"/>
              <exon start="46823" stop="46834"/>
              <exon start="47801" stop="47815"/>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47808" stop="47815"/>
              <exon start="47932" stop="48300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47934" stop="48442"/>
              <exon start="48560" stop="48608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47934" stop="48298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47935" stop="48356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47956" stop="48442"/>
              <exon start="48560" stop="48656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47958" stop="48439"/>
            </gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E276815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48667" stop="48931"/>
              <exon start="49291" stop="49637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48667" stop="48931"/>
              <exon start="49291" stop="49636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48670" stop="48931"/>
              <exon start="49291" stop="49434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48672" stop="48931"/>
              <exon start="49291" stop="49777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576173" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48675" stop="48931"/>
              <exon start="49291" stop="49492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48701" stop="48931"/>
              <exon start="49291" stop="49665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48701" stop="48931"/>
              <exon start="49291" stop="49468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48703" stop="48931"/>
              <exon start="49291" stop="49819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602979" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48703" stop="48931"/>
              <exon start="49291" stop="49679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48727" stop="48931"/>
              <exon start="49291" stop="49434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48736" stop="48931"/>
              <exon start="49291" stop="49850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48736" stop="48931"/>
              <exon start="49291" stop="49845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48744" stop="48931"/>
              <exon start="49291" stop="49752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48745" stop="48931"/>
              <exon start="49291" stop="49770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48746" stop="48931"/>
              <exon start="49291" stop="49808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611486" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48748" stop="48931"/>
              <exon start="49291" stop="49832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486277" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48759" stop="48931"/>
              <exon start="49291" stop="49560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48760" stop="48931"/>
              <exon start="49291" stop="49832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482282" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48790" stop="48931"/>
              <exon start="49291" stop="49850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48791" stop="48931"/>
              <exon start="49291" stop="49699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48793" stop="48931"/>
              <exon start="49291" stop="49638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48795" stop="48931"/>
              <exon start="49291" stop="49668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48800" stop="48931"/>
              <exon start="49291" stop="49540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216758" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48801" stop="48931"/>
              <exon start="49291" stop="49754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48801" stop="48931"/>
              <exon start="49291" stop="49720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48801" stop="48931"/>
              <exon start="49291" stop="49608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48801" stop="48931"/>
              <exon start="49291" stop="49382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48808" stop="48931"/>
              <exon start="49291" stop="49851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48812" stop="48931"/>
              <exon start="49291" stop="49700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48813" stop="48931"/>
              <exon start="49291" stop="49844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48813" stop="48931"/>
              <exon start="49291" stop="49841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48834" stop="48931"/>
              <exon start="49291" stop="49856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417440" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48834" stop="48931"/>
              <exon start="49291" stop="49813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292181" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48845" stop="48931"/>
              <exon start="49291" stop="49903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371559" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48847" stop="48931"/>
              <exon start="49291" stop="49832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484013" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48854" stop="48931"/>
              <exon start="49291" stop="49748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603056" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48864" stop="48931"/>
              <exon start="49291" stop="49394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48883" stop="48931"/>
              <exon start="49291" stop="49873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575208" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48904" stop="48931"/>
              <exon start="49291" stop="49813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48912" stop="48931"/>
              <exon start="49291" stop="49542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48915" stop="48931"/>
              <exon start="49291" stop="49846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268431" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49295" stop="49828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49296" stop="49830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49297" stop="49876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49297" stop="49835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49297" stop="49819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49315" stop="49845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594383" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49315" stop="49845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594515" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49315" stop="49843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49322" stop="49813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49323" stop="49851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49325" stop="49850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49325" stop="49850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49344" stop="49832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49347" stop="49748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49357" stop="49908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49364" stop="49852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49368" stop="49904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452284" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49369" stop="49857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49373" stop="49860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49398" stop="49875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49398" stop="49850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49406" stop="49845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49413" stop="49799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49416" stop="49865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361927" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49420" stop="49832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49424" stop="49751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49434" stop="49592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49436" stop="49784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49446" stop="49904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49457" stop="49850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49465" stop="49869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49466" stop="49904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49488" stop="49904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49495" stop="49800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49501" stop="49832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49518" stop="49853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49524" stop="49853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49543" stop="49845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49554" stop="49860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49574" stop="49832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220203" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACCAATATATATAGCAGTATTGCGTTCGCCGTTTCAACTCCATTCACCCCTCTTTCTCATCATCATCTCCTCGTTCTTCTCCTCTACACGAG : ACAAGAAAGGAG : ATCAGTAGATGAATG : GACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG : GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG : GATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAAATGCGGATCAGTTTGGTACTTGTGTTATTTTAAGTGTGGTATACAATATTAAGCATGC</gDNA_template>
            <first_frame> K  T  N  I  Y  S  S  I  A  F  A  V  S  T  P  F  T  P  L  S  H  H  H  L  L  V  L  L  L  Y  T  R :   Q  E  R  R :   S  V  D  E  W :   T  F  L  N  V  A  M  T  D  M  N  Q  H  P  T  V  F  Q  K  A  A  N  Q  L  H  L  R  S  S  L  S  Q  D  V  H  A  R  Y  G  G  V  Q  P  A  I  Y  Q  R  H  F  A  Y  G  N  Y  S  N  A  A  L  Q  R  G  Q  A  T  Q  D  L  S  L  I  T  S  N  A  S  P  V  F  V  Q  A  P  Q  E  K  G  F  A  A  F  A  T  D  F  L  M  G  G  V  S  A  A  V  S  K  T  A  A  A  P  I  E  R  V  K  L  L  I  Q  N  Q  D  E  M  L  K  A  G  R  L  S  E  P  Y  K  G  I  G  D  C  F  G  R  T  I  K  E  E  G  F  G  S  L  W  R  G  N  T  A  N  V  I  R  Y  F  P  T  Q  :  A  L  N  F  A  F  K  D  Y  F  K  R  L  F  N  F  K  K  D  R  D  G  Y  W  K  W  F  A  G  N  L  A  S  G  G  A  A  G  A  S  S  L  F  F  V  Y  S  L  D  Y  A  R  T  R  L  A  N  D  A  K  A  S  K  K  G  G  E  R  Q  F  N  G  L  V  D  V  Y  R  K  T  L  K  S  D  G  I  A  G  L  Y  R  G  F  N  I  S  C  V  G  I  I  V  Y  R  G  L  Y  F  G  M  Y  D  S  L  K  P  V  L  L  T  G  N  L  Q  :  D  S  F  F  A  S  F  A  L  G  W  L  I  T  N  G  A  G  L  A  S  Y  P  I  D  T  V  R  R  R  M  M  M  T  S  G  E  A  V  K  Y  K  S  S  L  D  A  F  S  Q  I  V  K  N  E  G  P  K  S  L  F  K  G  A  G  A  N  I  L  R  A  V  A  G  A  G  V  L  A  G  Y  D  K  L  Q  V  L  V  L  G  K  K  Y  G  S  G  G  A  *  V  S  L  V  T  S  F  R  I  *  M  V  M  K  I  F  L  V  L  H  L  S  I  Q  L  G  R  Q  L  S  L  F  L  L  P  F  F  F  V  I  I  R  K  I  L  E  W  V  K  A  *  K  P  H  T  R  F  P  C  *  R  V  I  T  V  L  F  G  R  T  L  F  Q  L  Q  S  L  Q  I  L  N  E  S  F  D  K  I  K  C  G  S  V  W  Y  L  C  Y  F  K  C  G  I  Q  Y  *  A  C </first_frame>
            <second_frame>  K  P  I  Y  I  A  V  L  R  S  P  F  Q  L  H  S  P  L  F  L  I  I  I  S  S  F  F  S  S  T  R   : D  K  K  G   : D  Q  *  M  N   : G  L  F  *  T  L  Q  *  Q  I  *  I  S  I  Q  L  F  S  R  R  Q  L  T  S  C  T  C  A  L  V  Y  P  K  M  S  M  L  A  M  G  A  F  S  L  L  S  T  R  G  I  L  L  M  A  T  T  P  M  L  L  C  R  E  A  K  P  L  R  I  Y  H  *  S  P  Q  M  P  H  L  C  L  C  R  L  L  K  R  K  D  L  Q  L  L  P  L  T  F  S  W  V  E  F  L  L  L  Y  Q  R  P  L  L  P  L  L  S  V  *  N  Y  *  S  K  I  K  M  R  C  S  R  L  V  G  C  Q  N  H  T  R  E  L  A  I  V  S  G  G  Q  L  R  K  K  V  L  G  L  Y  G  E  E  T  L  L  M  L  S  V  I  S  P  L  R :   P  *  T  L  H  S  R  T  T  S  R  D  S  S  T  S  R  R  T  V  M  A  T  G  S  G  L  L  E  T  L  H  Q  E  V  L  L  V  L  P  L  C  S  L  S  T  P  W  T  M  L  V  P  V  L  L  M  M  P  R  L  Q  R  R  E  A  R  G  S  S  M  V  W  L  M  S  T  G  R  H  S  N  L  M  E  L  L  V  Y  T  V  D  S  T  F  H  V  L  V  S  L  F  T  V  V  C  T  L  E  C  T  T  P  *  S  L  S  S  *  Q  E  T  C  R :   I  V  S  L  L  A  L  H  L  V  G  S  S  P  M  V  L  V  L  L  L  T  P  L  I  Q  *  E  E  E  *  *  *  H  L  V  R  R  *  S  T  R  A  R  L  M  H  S  P  R  L  L  R  M  R  V  P  N  L  C  S  R  V  L  V  L  T  S  S  E  L  L  L  V  L  V  C  W  L  D  M  T  S  F  R  F  L  F  W  E  R  N  T  D  L  V  V  P  K  S  A  S  *  H  P  L  E  F  R  W  *  *  K  S  F  W  C  Y  I  *  V  F  S  W  G  D  N  Y  H  Y  S  F  C  L  F  F  L  *  *  F  E  K  S  *  S  G  S  K  L  K  N  P  T  L  V  S  L  V  E  G  L  L  L  F  C  L  G  G  P  Y  F  N  C  R  A  Y  R  F  *  M  N  L  L  I  K  S  N  A  D  Q  F  G  T  C  V  I  L  S  V  V  Y  N  I  K  H   </second_frame>
            <third_frame>   N  Q  Y  I  *  Q  Y  C  V  R  R  F  N  S  I  H  P  S  F  S  S  S  S  P  R  S  S  P  L  H  E  :  T  R  K  E  :  I  S  R  *  M  :  D  F  F  K  R  C  N  D  R  Y  E  S  A  S  N  C  F  P  E  G  S  *  P  A  A  L  A  L  *  S  I  P  R  C  P  C  S  L  W  G  R  S  A  C  Y  L  P  E  A  F  C  L  W  Q  L  L  Q  C  C  S  A  E  R  P  S  H  S  G  S  I  I  D  H  L  K  C  L  T  C  V  C  A  G  S  S  R  E  R  I  C  S  F  C  H  *  L  S  H  G  W  S  F  C  C  C  I  K  D  R  C  C  P  Y  *  A  C  E  T  I  D  P  K  S  R  *  D  A  Q  G  W  *  A  V  R  T  I  Q  G  N  W  R  L  F  R  E  D  N  *  G  R  R  F  W  V  F  M  E  R  K  H  C  *  C  Y  P  L  F  P  H  S   : G  P  E  L  C  I  Q  G  L  L  Q  E  T  L  Q  L  Q  E  G  P  *  W  L  L  E  V  V  C  W  K  P  C  I  R  R  C  C  W  C  F  L  F  V  L  C  L  L  L  G  L  C  S  Y  P  S  C  *  *  C  Q  G  F  K  E  G  R  R  E  A  V  Q  W  F  G  *  C  L  Q  E  D  T  Q  I  *  W  N  C  W  S  I  P  W  I  Q  H  F  M  C  W  Y  H  C  L  P  W  F  V  L  W  N  V  R  L  L  E  A  C  P  L  D  R  K  P  A   : G  *  F  L  C  *  L  C  T  W  L  A  H  H  Q  W  C  W  S  C  F  L  P  H  *  Y  S  K  K  K  N  D  D  D  I  W  *  G  G  E  V  Q  E  L  A  *  C  I  L  P  D  C  *  E  *  G  S  Q  I  S  V  Q  G  C  W  C  *  H  P  P  S  C  C  W  C  W  C  V  G  W  I  *  Q  A  S  G  S  C  F  G  K  E  I  R  I  W  W  C  L  S  Q  P  R  N  I  L  *  N  L  D  G  D  E  N  L  F  G  V  T  F  E  Y  S  V  G  E  T  I  I  I  I  P  F  A  F  F  F  C  N  N  S  K  N  L  R  V  G  Q  S  L  K  T  P  H  S  F  P  L  L  K  G  Y  Y  C  F  V  W  A  D  L  I  S  I  A  E  L  T  D  S  E  *  I  F  *  *  N  Q  M  R  I  S  L  V  L  V  L  F  *  V  W  Y  T  I  L  S  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0245M17.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46087" stop="46181"/>
                    <exon start="46823" stop="46834"/>
                    <exon start="47801" stop="47815"/>
                    <exon start="47932" stop="48442"/>
                    <exon start="48560" stop="48931"/>
                    <exon start="49291" stop="49587"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1299</number_coding_nucleotides>
                  <number_encoded_amino_acids>433</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTNIYSSIAFAVSTPFTPLSHHHLLVLLLYTRQERRSVDEWTFLNVAMTDMNQHPTVFQKAANQLHLRSSLSQDVHARYGGVQPAIYQRHFAYGNYSNAALQRGQATQDLSLITSNASPVFVQAPQEKGFAAFATDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKAGRLSEPYKGIGDCFGRTIKEEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLFFVYSLDYARTRLANDAKASKKGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGNLQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQIVKNEGPKSLFKGAGANILRAVAGAGVLAGYDKLQVLVLGKKYGSGGA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0245M17.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49611" stop="49832"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLDGDENLFGVTFEYSVGETIIIIPFAFFFCNNSKNLRVGQSLKTPHSFPLLKGYYCFVWADLISIAELTDSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="47928" e_stop="48442"/>
            <exon e_start="48560" e_stop="48931"/>
            <exon e_start="49291" e_stop="49908"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.924" acc_prob="0.931" e_score="0.996"/>
          <exon-intron don_prob="0.995" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="47928" e_stop="48442" e_length="515"/>
          </exon>
          <intron i_serial="1" don_prob="0.924" acc_prob="0.931">
            <gDNA_intron_boundary i_start="48443" i_stop="48559" i_length="117"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48560" e_stop="48931" e_length="372"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.991">
            <gDNA_intron_boundary i_start="48932" i_stop="49290" i_length="359"/>
          </intron>
          <exon e_serial="3" e_score="0.971">
            <gDNA_exon_boundary e_start="49291" e_stop="49908" e_length="618"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47928" stop="48437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47929" stop="48442"/>
              <exon start="48560" stop="48844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48442"/>
              <exon start="48560" stop="48585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47932" stop="48198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47934" stop="48442"/>
              <exon start="48560" stop="48608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47934" stop="48298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47935" stop="48356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47956" stop="48442"/>
              <exon start="48560" stop="48656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47958" stop="48439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47966" stop="48442"/>
              <exon start="48560" stop="48608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47967" stop="48442"/>
              <exon start="48560" stop="48565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47969" stop="48378"/>
            </gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E290544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48672" stop="48931"/>
              <exon start="49291" stop="49777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576173" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48675" stop="48931"/>
              <exon start="49291" stop="49492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48701" stop="48931"/>
              <exon start="49291" stop="49665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48701" stop="48931"/>
              <exon start="49291" stop="49468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48703" stop="48931"/>
              <exon start="49291" stop="49819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602979" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48703" stop="48931"/>
              <exon start="49291" stop="49679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48727" stop="48931"/>
              <exon start="49291" stop="49434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48736" stop="48931"/>
              <exon start="49291" stop="49850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48736" stop="48931"/>
              <exon start="49291" stop="49845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48744" stop="48931"/>
              <exon start="49291" stop="49752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48745" stop="48931"/>
              <exon start="49291" stop="49770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48746" stop="48931"/>
              <exon start="49291" stop="49808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611486" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48748" stop="48931"/>
              <exon start="49291" stop="49832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486277" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48759" stop="48931"/>
              <exon start="49291" stop="49560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48760" stop="48931"/>
              <exon start="49291" stop="49832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482282" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48790" stop="48931"/>
              <exon start="49291" stop="49850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48791" stop="48931"/>
              <exon start="49291" stop="49699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48793" stop="48931"/>
              <exon start="49291" stop="49638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48795" stop="48931"/>
              <exon start="49291" stop="49668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48800" stop="48931"/>
              <exon start="49291" stop="49540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216758" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48801" stop="48931"/>
              <exon start="49291" stop="49754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48801" stop="48931"/>
              <exon start="49291" stop="49720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48801" stop="48931"/>
              <exon start="49291" stop="49608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48801" stop="48931"/>
              <exon start="49291" stop="49382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48808" stop="48931"/>
              <exon start="49291" stop="49851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48812" stop="48931"/>
              <exon start="49291" stop="49700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48813" stop="48931"/>
              <exon start="49291" stop="49844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48813" stop="48931"/>
              <exon start="49291" stop="49841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48834" stop="48931"/>
              <exon start="49291" stop="49856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417440" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48834" stop="48931"/>
              <exon start="49291" stop="49813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292181" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48845" stop="48931"/>
              <exon start="49291" stop="49903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371559" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48847" stop="48931"/>
              <exon start="49291" stop="49832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484013" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48854" stop="48931"/>
              <exon start="49291" stop="49748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603056" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48864" stop="48931"/>
              <exon start="49291" stop="49394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48883" stop="48931"/>
              <exon start="49291" stop="49873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575208" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48904" stop="48931"/>
              <exon start="49291" stop="49813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48912" stop="48931"/>
              <exon start="49291" stop="49542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48915" stop="48931"/>
              <exon start="49291" stop="49846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268431" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49295" stop="49828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49296" stop="49830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49297" stop="49876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49297" stop="49835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49297" stop="49819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49315" stop="49845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594383" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49315" stop="49845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594515" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49315" stop="49843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49322" stop="49813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49323" stop="49851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49325" stop="49850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49325" stop="49850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49344" stop="49832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49347" stop="49748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49357" stop="49908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49364" stop="49852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49368" stop="49904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452284" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49369" stop="49857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49373" stop="49860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49398" stop="49875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49398" stop="49850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49406" stop="49845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49413" stop="49799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49416" stop="49865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361927" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49420" stop="49832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49424" stop="49751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49434" stop="49592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49436" stop="49784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49446" stop="49904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49457" stop="49850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49465" stop="49869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49466" stop="49904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49488" stop="49904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49495" stop="49800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49501" stop="49832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49518" stop="49853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49524" stop="49853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49543" stop="49845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49554" stop="49860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49574" stop="49832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220203" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAGGACTTTTTTAAACGTTGCAATGACAGATATGAATCAGCATCCAACTGTTTTCCAGAAGGCAGCTAACCAGCTGCACTTGCGCTCTAGTCTATCCCAAGATGTCCATGCTCGCTATGGGGGCGTTCAGCCTGCTATCTACCAGAGGCATTTTGCTTATGGCAACTACTCCAATGCTGCTCTGCAGAGAGGCCAAGCCACTCAGGATCTATCATTGATCACCTCAAATGCCTCACCTGTGTTTGTGCAGGCTCCTCAAGAGAAAGGATTTGCAGCTTTTGCCACTGACTTTCTCATGGGTGGAGTTTCTGCTGCTGTATCAAAGACCGCTGCTGCCCCTATTGAGCGTGTGAAACTATTGATCCAAAATCAAGATGAGATGCTCAAGGCTGGTAGGCTGTCAGAACCATACAAGGGAATTGGCGATTGTTTCGGGAGGACAATTAAGGAAGAAGGTTTTGGGTCTTTATGGAGAGGAAACACTGCTAATGTTATCCGTTATTTCCCCACTCAG : GCCCTGAACTTTGCATTCAAGGACTACTTCAAGAGACTCTTCAACTTCAAGAAGGACCGTGATGGCTACTGGAAGTGGTTTGCTGGAAACCTTGCATCAGGAGGTGCTGCTGGTGCTTCCTCTTTGTTCTTTGTCTACTCCTTGGACTATGCTCGTACCCGTCTTGCTAATGATGCCAAGGCTTCAAAGAAGGGAGGCGAGAGGCAGTTCAATGGTTTGGTTGATGTCTACAGGAAGACACTCAAATCTGATGGAATTGCTGGTCTATACCGTGGATTCAACATTTCATGTGTTGGTATCATTGTTTACCGTGGTTTGTACTTTGGAATGTACGACTCCTTGAAGCCTGTCCTCTTGACAGGAAACCTGCAG : GATAGTTTCTTTGCTAGCTTTGCACTTGGTTGGCTCATCACCAATGGTGCTGGTCTTGCTTCTTACCCCATTGATACAGTAAGAAGAAGAATGATGATGACATCTGGTGAGGCGGTGAAGTACAAGAGCTCGCTTGATGCATTCTCCCAGATTGTTAAGAATGAGGGTCCCAAATCTCTGTTCAAGGGTGCTGGTGCTAACATCCTCCGAGCTGTTGCTGGTGCTGGTGTGTTGGCTGGATATGACAAGCTTCAGGTTCTTGTTTTGGGAAAGAAATACGGATCTGGTGGTGCCTAAGTCAGCCTCGTAACATCCTTTAGAATTTAGATGGTGATGAAAATCTTTTTGGTGTTACATTTGAGTATTCAGTTGGGGAGACAATTATCATTATTCCTTTTGCCTTTTTTTTTTGTAATAATTCGAAAAATCTTAGAGTGGGTCAAAGCTTAAAAACCCCACACTCGTTTCCCTTGTTGAAGGGTTATTACTGTTTTGTTTGGGCGGACCTTATTTCAATTGCAGAGCTTACAGATTCTGAATGAATCTTTTGATAAAATCAAATGCGGATCAGTTTGGTACTTGTGTTATTTTAAGTGTGGTATACAATATTAAGCATGC</gDNA_template>
            <first_frame> A  G  L  F  *  T  L  Q  *  Q  I  *  I  S  I  Q  L  F  S  R  R  Q  L  T  S  C  T  C  A  L  V  Y  P  K  M  S  M  L  A  M  G  A  F  S  L  L  S  T  R  G  I  L  L  M  A  T  T  P  M  L  L  C  R  E  A  K  P  L  R  I  Y  H  *  S  P  Q  M  P  H  L  C  L  C  R  L  L  K  R  K  D  L  Q  L  L  P  L  T  F  S  W  V  E  F  L  L  L  Y  Q  R  P  L  L  P  L  L  S  V  *  N  Y  *  S  K  I  K  M  R  C  S  R  L  V  G  C  Q  N  H  T  R  E  L  A  I  V  S  G  G  Q  L  R  K  K  V  L  G  L  Y  G  E  E  T  L  L  M  L  S  V  I  S  P  L  R :   P  *  T  L  H  S  R  T  T  S  R  D  S  S  T  S  R  R  T  V  M  A  T  G  S  G  L  L  E  T  L  H  Q  E  V  L  L  V  L  P  L  C  S  L  S  T  P  W  T  M  L  V  P  V  L  L  M  M  P  R  L  Q  R  R  E  A  R  G  S  S  M  V  W  L  M  S  T  G  R  H  S  N  L  M  E  L  L  V  Y  T  V  D  S  T  F  H  V  L  V  S  L  F  T  V  V  C  T  L  E  C  T  T  P  *  S  L  S  S  *  Q  E  T  C  R :   I  V  S  L  L  A  L  H  L  V  G  S  S  P  M  V  L  V  L  L  L  T  P  L  I  Q  *  E  E  E  *  *  *  H  L  V  R  R  *  S  T  R  A  R  L  M  H  S  P  R  L  L  R  M  R  V  P  N  L  C  S  R  V  L  V  L  T  S  S  E  L  L  L  V  L  V  C  W  L  D  M  T  S  F  R  F  L  F  W  E  R  N  T  D  L  V  V  P  K  S  A  S  *  H  P  L  E  F  R  W  *  *  K  S  F  W  C  Y  I  *  V  F  S  W  G  D  N  Y  H  Y  S  F  C  L  F  F  L  *  *  F  E  K  S  *  S  G  S  K  L  K  N  P  T  L  V  S  L  V  E  G  L  L  L  F  C  L  G  G  P  Y  F  N  C  R  A  Y  R  F  *  M  N  L  L  I  K  S  N  A  D  Q  F  G  T  C  V  I  L  S  V  V  Y  N  I  K  H   </first_frame>
            <second_frame>  Q  D  F  F  K  R  C  N  D  R  Y  E  S  A  S  N  C  F  P  E  G  S  *  P  A  A  L  A  L  *  S  I  P  R  C  P  C  S  L  W  G  R  S  A  C  Y  L  P  E  A  F  C  L  W  Q  L  L  Q  C  C  S  A  E  R  P  S  H  S  G  S  I  I  D  H  L  K  C  L  T  C  V  C  A  G  S  S  R  E  R  I  C  S  F  C  H  *  L  S  H  G  W  S  F  C  C  C  I  K  D  R  C  C  P  Y  *  A  C  E  T  I  D  P  K  S  R  *  D  A  Q  G  W  *  A  V  R  T  I  Q  G  N  W  R  L  F  R  E  D  N  *  G  R  R  F  W  V  F  M  E  R  K  H  C  *  C  Y  P  L  F  P  H  S   : G  P  E  L  C  I  Q  G  L  L  Q  E  T  L  Q  L  Q  E  G  P  *  W  L  L  E  V  V  C  W  K  P  C  I  R  R  C  C  W  C  F  L  F  V  L  C  L  L  L  G  L  C  S  Y  P  S  C  *  *  C  Q  G  F  K  E  G  R  R  E  A  V  Q  W  F  G  *  C  L  Q  E  D  T  Q  I  *  W  N  C  W  S  I  P  W  I  Q  H  F  M  C  W  Y  H  C  L  P  W  F  V  L  W  N  V  R  L  L  E  A  C  P  L  D  R  K  P  A   : G  *  F  L  C  *  L  C  T  W  L  A  H  H  Q  W  C  W  S  C  F  L  P  H  *  Y  S  K  K  K  N  D  D  D  I  W  *  G  G  E  V  Q  E  L  A  *  C  I  L  P  D  C  *  E  *  G  S  Q  I  S  V  Q  G  C  W  C  *  H  P  P  S  C  C  W  C  W  C  V  G  W  I  *  Q  A  S  G  S  C  F  G  K  E  I  R  I  W  W  C  L  S  Q  P  R  N  I  L  *  N  L  D  G  D  E  N  L  F  G  V  T  F  E  Y  S  V  G  E  T  I  I  I  I  P  F  A  F  F  F  C  N  N  S  K  N  L  R  V  G  Q  S  L  K  T  P  H  S  F  P  L  L  K  G  Y  Y  C  F  V  W  A  D  L  I  S  I  A  E  L  T  D  S  E  *  I  F  *  *  N  Q  M  R  I  S  L  V  L  V  L  F  *  V  W  Y  T  I  L  S  M  </second_frame>
            <third_frame>   R  T  F  L  N  V  A  M  T  D  M  N  Q  H  P  T  V  F  Q  K  A  A  N  Q  L  H  L  R  S  S  L  S  Q  D  V  H  A  R  Y  G  G  V  Q  P  A  I  Y  Q  R  H  F  A  Y  G  N  Y  S  N  A  A  L  Q  R  G  Q  A  T  Q  D  L  S  L  I  T  S  N  A  S  P  V  F  V  Q  A  P  Q  E  K  G  F  A  A  F  A  T  D  F  L  M  G  G  V  S  A  A  V  S  K  T  A  A  A  P  I  E  R  V  K  L  L  I  Q  N  Q  D  E  M  L  K  A  G  R  L  S  E  P  Y  K  G  I  G  D  C  F  G  R  T  I  K  E  E  G  F  G  S  L  W  R  G  N  T  A  N  V  I  R  Y  F  P  T  Q  :  A  L  N  F  A  F  K  D  Y  F  K  R  L  F  N  F  K  K  D  R  D  G  Y  W  K  W  F  A  G  N  L  A  S  G  G  A  A  G  A  S  S  L  F  F  V  Y  S  L  D  Y  A  R  T  R  L  A  N  D  A  K  A  S  K  K  G  G  E  R  Q  F  N  G  L  V  D  V  Y  R  K  T  L  K  S  D  G  I  A  G  L  Y  R  G  F  N  I  S  C  V  G  I  I  V  Y  R  G  L  Y  F  G  M  Y  D  S  L  K  P  V  L  L  T  G  N  L  Q  :  D  S  F  F  A  S  F  A  L  G  W  L  I  T  N  G  A  G  L  A  S  Y  P  I  D  T  V  R  R  R  M  M  M  T  S  G  E  A  V  K  Y  K  S  S  L  D  A  F  S  Q  I  V  K  N  E  G  P  K  S  L  F  K  G  A  G  A  N  I  L  R  A  V  A  G  A  G  V  L  A  G  Y  D  K  L  Q  V  L  V  L  G  K  K  Y  G  S  G  G  A  *  V  S  L  V  T  S  F  R  I  *  M  V  M  K  I  F  L  V  L  H  L  S  I  Q  L  G  R  Q  L  S  L  F  L  L  P  F  F  F  V  I  I  R  K  I  L  E  W  V  K  A  *  K  P  H  T  R  F  P  C  *  R  V  I  T  V  L  F  G  R  T  L  F  Q  L  Q  S  L  Q  I  L  N  E  S  F  D  K  I  K  C  G  S  V  W  Y  L  C  Y  F  K  C  G  I  Q  Y  *  A  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0245M17.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47930" stop="48442"/>
                    <exon start="48560" stop="48931"/>
                    <exon start="49291" stop="49587"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1179</number_coding_nucleotides>
                  <number_encoded_amino_acids>393</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTFLNVAMTDMNQHPTVFQKAANQLHLRSSLSQDVHARYGGVQPAIYQRHFAYGNYSNAALQRGQATQDLSLITSNASPVFVQAPQEKGFAAFATDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKAGRLSEPYKGIGDCFGRTIKEEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLFFVYSLDYARTRLANDAKASKKGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGNLQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQIVKNEGPKSLFKGAGANILRAVAGAGVLAGYDKLQVLVLGKKYGSGGA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0245M17.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49611" stop="49832"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLDGDENLFGVTFEYSVGETIIIIPFAFFFCNNSKNLRVGQSLKTPHSFPLLKGYYCFVWADLISIAELTDSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="46242" e_stop="46777"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="46242" e_stop="46777" e_length="536"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46242" stop="46777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329131" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTATTCATTTTTTCAGATTTTTTATCTCCGTTTTGCTTATGTATATGTATTCATTTTACTGTTTTTAGCTGTTTTCTGATTAGATCTGTAATATATAGTGATTGTTCTGTTTCGTAACTTTAGTGCGGTTCATTCTGAGTATTTTTTAAGGTGTTACGGAGATCTGCTTTTGTTTTTGCTAGAAATGTGATTTAGTTTAATGGATCCAATCGTATTTGTGTTTTTCGATGTTTTTATTAGTTGTGGATGAGTATTTTGACTGTTGAGTGGGCAGATCTGGTCAATGAGTTATAGTATTGCTATGTTCATTCATTATGCTGCTCCATGGGCAAACGTCTAGTAATTTTAACTAGTTTTTTTTAACTAAACGTAGTATAGAATTGCTGGTTGTAGTACTTTATATAGTCCCTCAGTTTATGTGATTGTAGTTGACTAGGGTTGACTAGTCACTGAGTCCAAGAAAGAATAATTTTTGAAACATCTGATCTAAAACAAGCTATGTATATGTTTTTGTGGCTATAACTAATCTAATTG</gDNA_template>
            <first_frame> F  Y  S  F  F  Q  I  F  Y  L  R  F  A  Y  V  Y  V  F  I  L  L  F  L  A  V  F  *  L  D  L  *  Y  I  V  I  V  L  F  R  N  F  S  A  V  H  S  E  Y  F  L  R  C  Y  G  D  L  L  L  F  L  L  E  M  *  F  S  L  M  D  P  I  V  F  V  F  F  D  V  F  I  S  C  G  *  V  F  *  L  L  S  G  Q  I  W  S  M  S  Y  S  I  A  M  F  I  H  Y  A  A  P  W  A  N  V  *  *  F  *  L  V  F  F  N  *  T  *  Y  R  I  A  G  C  S  T  L  Y  S  P  S  V  Y  V  I  V  V  D  *  G  *  L  V  T  E  S  K  K  E  *  F  L  K  H  L  I  *  N  K  L  C  I  C  F  C  G  Y  N  *  S  N   </first_frame>
            <second_frame>  F  I  H  F  F  R  F  F  I  S  V  L  L  M  Y  M  Y  S  F  Y  C  F  *  L  F  S  D  *  I  C  N  I  *  *  L  F  C  F  V  T  L  V  R  F  I  L  S  I  F  *  G  V  T  E  I  C  F  C  F  C  *  K  C  D  L  V  *  W  I  Q  S  Y  L  C  F  S  M  F  L  L  V  V  D  E  Y  F  D  C  *  V  G  R  S  G  Q  *  V  I  V  L  L  C  S  F  I  M  L  L  H  G  Q  T  S  S  N  F  N  *  F  F  L  T  K  R  S  I  E  L  L  V  V  V  L  Y  I  V  P  Q  F  M  *  L  *  L  T  R  V  D  *  S  L  S  P  R  K  N  N  F  *  N  I  *  S  K  T  S  Y  V  Y  V  F  V  A  I  T  N  L  I  </second_frame>
            <third_frame>   L  F  I  F  S  D  F  L  S  P  F  C  L  C  I  C  I  H  F  T  V  F  S  C  F  L  I  R  S  V  I  Y  S  D  C  S  V  S  *  L  *  C  G  S  F  *  V  F  F  K  V  L  R  R  S  A  F  V  F  A  R  N  V  I  *  F  N  G  S  N  R  I  C  V  F  R  C  F  Y  *  L  W  M  S  I  L  T  V  E  W  A  D  L  V  N  E  L  *  Y  C  Y  V  H  S  L  C  C  S  M  G  K  R  L  V  I  L  T  S  F  F  *  L  N  V  V  *  N  C  W  L  *  Y  F  I  *  S  L  S  L  C  D  C  S  *  L  G  L  T  S  H  *  V  Q  E  R  I  I  F  E  T  S  D  L  K  Q  A  M  Y  M  F  L  W  L  *  L  I  *  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0245M17.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="48315" PGL_stop="47922"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48315" e_stop="47922"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="48315" e_stop="47922" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48315" stop="47922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279977" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAGCATCTCATCTTGATTTTGGATCAATAGTTTCACACGCTCAATAGGGGCAGCAGCGGTCTTTGATACAGCAGCAGAAACTCCACCCATGAGAAAGTCAGTGGCAAAAGCTGCAAATCCTTTCTCTTGAGGAGCCTGCACAAACACAGGTGAGGCATTTGAGGTGATCAATGATAGATCCTGAGTGGCTTGGCCTCTCTGCAGAGCAGCATTGGAGTAGTTGCCATAAGCAAAATGCCTCTGGTAGATAGCAGGCTGAACGCCCCCATAGCGAGCATGGACATCTTGGGATAGACTAGAGCGCAAGTGCAGCTGGTTAGCTGCCTTCTGGAAAACAGTTGGATGCTGATTCATATCTGTCATTGCAACGTTTAAAAAAGTCCTGCACAGAT</gDNA_template>
            <first_frame> L  S  I  S  S  *  F  W  I  N  S  F  T  R  S  I  G  A  A  A  V  F  D  T  A  A  E  T  P  P  M  R  K  S  V  A  K  A  A  N  P  F  S  *  G  A  C  T  N  T  G  E  A  F  E  V  I  N  D  R  S  *  V  A  W  P  L  C  R  A  A  L  E  *  L  P  *  A  K  C  L  W  *  I  A  G  *  T  P  P  *  R  A  W  T  S  W  D  R  L  E  R  K  C  S  W  L  A  A  F  W  K  T  V  G  C  *  F  I  S  V  I  A  T  F  K  K  V  L  H  R  </first_frame>
            <second_frame>  *  A  S  H  L  D  F  G  S  I  V  S  H  A  Q  *  G  Q  Q  R  S  L  I  Q  Q  Q  K  L  H  P  *  E  S  Q  W  Q  K  L  Q  I  L  S  L  E  E  P  A  Q  T  Q  V  R  H  L  R  *  S  M  I  D  P  E  W  L  G  L  S  A  E  Q  H  W  S  S  C  H  K  Q  N  A  S  G  R  *  Q  A  E  R  P  H  S  E  H  G  H  L  G  I  D  *  S  A  S  A  A  G  *  L  P  S  G  K  Q  L  D  A  D  S  Y  L  S  L  Q  R  L  K  K  S  C  T  D </second_frame>
            <third_frame>   E  H  L  I  L  I  L  D  Q  *  F  H  T  L  N  R  G  S  S  G  L  *  Y  S  S  R  N  S  T  H  E  K  V  S  G  K  S  C  K  S  F  L  L  R  S  L  H  K  H  R  *  G  I  *  G  D  Q  *  *  I  L  S  G  L  A  S  L  Q  S  S  I  G  V  V  A  I  S  K  M  P  L  V  D  S  R  L  N  A  P  I  A  S  M  D  I  L  G  *  T  R  A  Q  V  Q  L  V  S  C  L  L  E  N  S  W  M  L  I  H  I  C  H  C  N  V  *  K  S  P  A  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0245M17.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="49903" PGL_stop="49348"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49903" e_stop="49348"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="49903" e_stop="49348" e_length="556"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49903" stop="49430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49859" stop="49354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49846" stop="49348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49844" stop="49541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411818" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTAATATTGTATACCACACTTAAAATAACACAAGTACCAAACTGATCCGCATTTGATTTTATCAAAAGATTCATTCAGAATCTGTAAGCTCTGCAATTGAAATAAGGTCCGCCCAAACAAAACAGTAATAACCCTTCAACAAGGGAAACGAGTGTGGGGTTTTTAAGCTTTGACCCACTCTAAGATTTTTCGAATTATTACAAAAAAAAAAGGCAAAAGGAATAATGATAATTGTCTCCCCAACTGAATACTCAAATGTAACACCAAAAAGATTTTCATCACCATCTAAATTCTAAAGGATGTTACGAGGCTGACTTAGGCACCACCAGATCCGTATTTCTTTCCCAAAACAAGAACCTGAAGCTTGTCATATCCAGCCAACACACCAGCACCAGCAACAGCTCGGAGGATGTTAGCACCAGCACCCTTGAACAGAGATTTGGGACCCTCATTCTTAACAATCTGGGAGAATGCATCAAGCGAGCTCTTGTACTTCACCGCCTCACCAGATGTCATCATCATTCTTCTTCTTACTGTATCAATGGGGTAAGAAGC</gDNA_template>
            <first_frame> L  N  I  V  Y  H  T  *  N  N  T  S  T  K  L  I  R  I  *  F  Y  Q  K  I  H  S  E  S  V  S  S  A  I  E  I  R  S  A  Q  T  K  Q  *  *  P  F  N  K  G  N  E  C  G  V  F  K  L  *  P  T  L  R  F  F  E  L  L  Q  K  K  K  A  K  G  I  M  I  I  V  S  P  T  E  Y  S  N  V  T  P  K  R  F  S  S  P  S  K  F  *  R  M  L  R  G  *  L  R  H  H  Q  I  R  I  S  F  P  K  Q  E  P  E  A  C  H  I  Q  P  T  H  Q  H  Q  Q  Q  L  G  G  C  *  H  Q  H  P  *  T  E  I  W  D  P  H  S  *  Q  S  G  R  M  H  Q  A  S  S  C  T  S  P  P  H  Q  M  S  S  S  F  F  F  L  L  Y  Q  W  G  K  K  </first_frame>
            <second_frame>  L  I  L  Y  T  T  L  K  I  T  Q  V  P  N  *  S  A  F  D  F  I  K  R  F  I  Q  N  L  *  A  L  Q  L  K  *  G  P  P  K  Q  N  S  N  N  P  S  T  R  E  T  S  V  G  F  L  S  F  D  P  L  *  D  F  S  N  Y  Y  K  K  K  R  Q  K  E  *  *  *  L  S  P  Q  L  N  T  Q  M  *  H  Q  K  D  F  H  H  H  L  N  S  K  G  C  Y  E  A  D  L  G  T  T  R  S  V  F  L  S  Q  N  K  N  L  K  L  V  I  S  S  Q  H  T  S  T  S  N  S  S  E  D  V  S  T  S  T  L  E  Q  R  F  G  T  L  I  L  N  N  L  G  E  C  I  K  R  A  L  V  L  H  R  L  T  R  C  H  H  H  S  S  S  Y  C  I  N  G  V  R  S </second_frame>
            <third_frame>   *  Y  C  I  P  H  L  K  *  H  K  Y  Q  T  D  P  H  L  I  L  S  K  D  S  F  R  I  C  K  L  C  N  *  N  K  V  R  P  N  K  T  V  I  T  L  Q  Q  G  K  R  V  W  G  F  *  A  L  T  H  S  K  I  F  R  I  I  T  K  K  K  G  K  R  N  N  D  N  C  L  P  N  *  I  L  K  C  N  T  K  K  I  F  I  T  I  *  I  L  K  D  V  T  R  L  T  *  A  P  P  D  P  Y  F  F  P  K  T  R  T  *  S  L  S  Y  P  A  N  T  P  A  P  A  T  A  R  R  M  L  A  P  A  P  L  N  R  D  L  G  P  S  F  L  T  I  W  E  N  A  S  S  E  L  L  Y  F  T  A  S  P  D  V  I  I  I  L  L  L  T  V  S  M  G  *  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0245M17.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49641" stop="49348"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HQKDFHHHLNSKGCYEADLGTTRSVFLSQNKNLKLVISSQHTSTSNSSEDVSTSTLEQRFGTLILNNLGECIKRALVLHRLTRCHHHSSSYCINGVRS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="102258" PGL_stop="103043"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102258" e_stop="103043"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="102258" e_stop="103043" e_length="786"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102258" stop="103043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537417" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTCATATAAGGCGATACAAACTCAAATCCCAAATTCATAATCTTCAATCGATTTATACAGTTCATATATTATATATATATATATATATATATATATGTAGCTCTAGCAGCATCAACAACAGCTATACTTAGTTTTCTTCTTTATTTGACTATTTAATTAAATAAGATAAATATAGAACTAGGGTTAGGGTTTTGCTGTTTAATCCGCTTTCATGGCGGAAGACGAGGAATCTTTGAATAAACCTATCATTGCTGACGAGCTAAAACTCGATAACGTTACCGGATTGGGCGCCACGTCACCATCACTGGTTGGTGAGGGCGATACGGCTTCGCCGGCGCCGGAGGTGGGCCCACCATCAGTCGAAGAATCGGAGGTTGCTCTAGACAGTTCACAACAGGCTGGCGTTGGTGATGCTGACGTGGGTGCATCGATGGGGGTGTCAGAGAGTTCTCAGCAGGGTAATGGTGATGCTGAGGAAGTTGAGGCGGTTAGGGTGACTGAAAATGAAGCGGTTACGGAGGAAAATGTTACGGCTTTGGAGAAAGATGAGGTGACTGAGGCGGCCTTGGTGAGAAATGAGGGGACGGAGGAAAATGTGACGGCTTTGGAGAAAGATGAGGTGACAGAGGTGGCTTTAGAGAATGAGGTGGCAGAGGCATTGGAAGTCACAAAGGGAGAAGCAGAAATTTGTATGCCAGAGGGTACTGGCGATGAGGAAGTGGTCATGACTGCAAAGGAAAATGAGAATGATGAAATTTTGGCTGGAAATGATAATATTGAGGG</gDNA_template>
            <first_frame> F  F  I  *  G  D  T  N  S  N  P  K  F  I  I  F  N  R  F  I  Q  F  I  Y  Y  I  Y  I  Y  I  Y  I  Y  V  A  L  A  A  S  T  T  A  I  L  S  F  L  L  Y  L  T  I  *  L  N  K  I  N  I  E  L  G  L  G  F  C  C  L  I  R  F  H  G  G  R  R  G  I  F  E  *  T  Y  H  C  *  R  A  K  T  R  *  R  Y  R  I  G  R  H  V  T  I  T  G  W  *  G  R  Y  G  F  A  G  A  G  G  G  P  T  I  S  R  R  I  G  G  C  S  R  Q  F  T  T  G  W  R  W  *  C  *  R  G  C  I  D  G  G  V  R  E  F  S  A  G  *  W  *  C  *  G  S  *  G  G  *  G  D  *  K  *  S  G  Y  G  G  K  C  Y  G  F  G  E  R  *  G  D  *  G  G  L  G  E  K  *  G  D  G  G  K  C  D  G  F  G  E  R  *  G  D  R  G  G  F  R  E  *  G  G  R  G  I  G  S  H  K  G  R  S  R  N  L  Y  A  R  G  Y  W  R  *  G  S  G  H  D  C  K  G  K  *  E  *  *  N  F  G  W  K  *  *  Y  *  G </first_frame>
            <second_frame>  S  S  Y  K  A  I  Q  T  Q  I  P  N  S  *  S  S  I  D  L  Y  S  S  Y  I  I  Y  I  Y  I  Y  I  Y  M  *  L  *  Q  H  Q  Q  Q  L  Y  L  V  F  F  F  I  *  L  F  N  *  I  R  *  I  *  N  *  G  *  G  F  A  V  *  S  A  F  M  A  E  D  E  E  S  L  N  K  P  I  I  A  D  E  L  K  L  D  N  V  T  G  L  G  A  T  S  P  S  L  V  G  E  G  D  T  A  S  P  A  P  E  V  G  P  P  S  V  E  E  S  E  V  A  L  D  S  S  Q  Q  A  G  V  G  D  A  D  V  G  A  S  M  G  V  S  E  S  S  Q  Q  G  N  G  D  A  E  E  V  E  A  V  R  V  T  E  N  E  A  V  T  E  E  N  V  T  A  L  E  K  D  E  V  T  E  A  A  L  V  R  N  E  G  T  E  E  N  V  T  A  L  E  K  D  E  V  T  E  V  A  L  E  N  E  V  A  E  A  L  E  V  T  K  G  E  A  E  I  C  M  P  E  G  T  G  D  E  E  V  V  M  T  A  K  E  N  E  N  D  E  I  L  A  G  N  D  N  I  E   </second_frame>
            <third_frame>   L  H  I  R  R  Y  K  L  K  S  Q  I  H  N  L  Q  S  I  Y  T  V  H  I  L  Y  I  Y  I  Y  I  Y  I  C  S  S  S  S  I  N  N  S  Y  T  *  F  S  S  L  F  D  Y  L  I  K  *  D  K  Y  R  T  R  V  R  V  L  L  F  N  P  L  S  W  R  K  T  R  N  L  *  I  N  L  S  L  L  T  S  *  N  S  I  T  L  P  D  W  A  P  R  H  H  H  W  L  V  R  A  I  R  L  R  R  R  R  R  W  A  H  H  Q  S  K  N  R  R  L  L  *  T  V  H  N  R  L  A  L  V  M  L  T  W  V  H  R  W  G  C  Q  R  V  L  S  R  V  M  V  M  L  R  K  L  R  R  L  G  *  L  K  M  K  R  L  R  R  K  M  L  R  L  W  R  K  M  R  *  L  R  R  P  W  *  E  M  R  G  R  R  K  M  *  R  L  W  R  K  M  R  *  Q  R  W  L  *  R  M  R  W  Q  R  H  W  K  S  Q  R  E  K  Q  K  F  V  C  Q  R  V  L  A  M  R  K  W  S  *  L  Q  R  K  M  R  M  M  K  F  W  L  E  M  I  I  L  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0245M17.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102463" stop="103041"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAFMAEDEESLNKPIIADELKLDNVTGLGATSPSLVGEGDTASPAPEVGPPSVEESEVALDSSQQAGVGDADVGASMGVSESSQQGNGDAEEVEAVRVTENEAVTEENVTALEKDEVTEAALVRNEGTEENVTALEKDEVTEVALENEVAEALEVTKGEAEICMPEGTGDEEVVMTAKENENDEILAGNDNIE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="103944" PGL_stop="108936"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103944" e_stop="103949"/>
            <exon e_start="104058" e_stop="104137"/>
            <exon e_start="107721" e_stop="107905"/>
            <exon e_start="108553" e_stop="108802"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.850" acc_prob="0.992" e_score="0.667"/>
          <exon-intron don_prob="0.990" acc_prob="0.994" e_score="0.950"/>
          <exon-intron don_prob="0.986" acc_prob="0.981" e_score="0.973"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.667">
            <gDNA_exon_boundary e_start="103944" e_stop="103949" e_length="6"/>
          </exon>
          <intron i_serial="1" don_prob="0.850" acc_prob="0.992">
            <gDNA_intron_boundary i_start="103950" i_stop="104057" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="0.950">
            <gDNA_exon_boundary e_start="104058" e_stop="104137" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.994">
            <gDNA_intron_boundary i_start="104138" i_stop="107720" i_length="3583"/>
          </intron>
          <exon e_serial="3" e_score="0.973">
            <gDNA_exon_boundary e_start="107721" e_stop="107905" e_length="185"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.981">
            <gDNA_intron_boundary i_start="107906" i_stop="108552" i_length="647"/>
          </intron>
          <exon e_serial="4" e_score="0.972">
            <gDNA_exon_boundary e_start="108553" e_stop="108802" e_length="250"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103944" stop="103949"/>
              <exon start="104058" stop="104137"/>
              <exon start="107721" stop="107905"/>
              <exon start="108553" stop="108802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689427" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGTAG : GGGTTGTACGAAAGCATATCATCCCTCGTGTATTGATAGGGATGAGGAATTTTTTCGTGCCAAGGGTCGATGGAATTGTG : GTTGGCATCAGTGCACTATTTGTCAGAAGAATGCTTGCTATTTGTGCTACACATGCACATTTTCATTATGCAAGGGGTGCATAAAAGATGATGTCATCCTATGTGTAAGAGGAAACAAGGGATTTTGCAAGAACTGCATGAGAATGGTCAAGCTAATAGAAGGCATTGGTAAAGAAGAGAATGAT : GGTCCGATAGATTTTGATGACAAGAGTAGCTTTGAATATCTGTTCAAGGACTACTTAATGGATTTAAAAGCGAAGCTATCTTTATCTTCAGATGAAATTGCTGATGCCAAAAGTCCTCGGAAGGGAGCTGATGTGTCAGCTTCCAAACAAGAACTGTCTCAGGCACAACGTGACAATAATGATGATGGAGGTTCTGGTTCAGATGCATCCATTGACACATTGGAAGCAAGTAAAATCAAAAGAAGAAAGC</gDNA_template>
            <first_frame> P  *  :  G  L  Y  E  S  I  S  S  L  V  Y  *  *  G  *  G  I  F  S  C  Q  G  S  M  E  L  W :   L  A  S  V  H  Y  L  S  E  E  C  L  L  F  V  L  H  M  H  I  F  I  M  Q  G  V  H  K  R  *  C  H  P  M  C  K  R  K  Q  G  I  L  Q  E  L  H  E  N  G  Q  A  N  R  R  H  W  *  R  R  E  *   : W  S  D  R  F  *  *  Q  E  *  L  *  I  S  V  Q  G  L  L  N  G  F  K  S  E  A  I  F  I  F  R  *  N  C  *  C  Q  K  S  S  E  G  S  *  C  V  S  F  Q  T  R  T  V  S  G  T  T  *  Q  *  *  *  W  R  F  W  F  R  C  I  H  *  H  I  G  S  K  *  N  Q  K  K  K   </first_frame>
            <second_frame>  R  R :   G  C  T  K  A  Y  H  P  S  C  I  D  R  D  E  E  F  F  R  A  K  G  R  W  N  C   : G  W  H  Q  C  T  I  C  Q  K  N  A  C  Y  L  C  Y  T  C  T  F  S  L  C  K  G  C  I  K  D  D  V  I  L  C  V  R  G  N  K  G  F  C  K  N  C  M  R  M  V  K  L  I  E  G  I  G  K  E  E  N  D  :  G  P  I  D  F  D  D  K  S  S  F  E  Y  L  F  K  D  Y  L  M  D  L  K  A  K  L  S  L  S  S  D  E  I  A  D  A  K  S  P  R  K  G  A  D  V  S  A  S  K  Q  E  L  S  Q  A  Q  R  D  N  N  D  D  G  G  S  G  S  D  A  S  I  D  T  L  E  A  S  K  I  K  R  R  K  </second_frame>
            <third_frame>   V   : G  V  V  R  K  H  I  I  P  R  V  L  I  G  M  R  N  F  F  V  P  R  V  D  G  I  V  :  V  G  I  S  A  L  F  V  R  R  M  L  A  I  C  A  T  H  A  H  F  H  Y  A  R  G  A  *  K  M  M  S  S  Y  V  *  E  E  T  R  D  F  A  R  T  A  *  E  W  S  S  *  *  K  A  L  V  K  K  R  M  M :   V  R  *  I  L  M  T  R  V  A  L  N  I  C  S  R  T  T  *  W  I  *  K  R  S  Y  L  Y  L  Q  M  K  L  L  M  P  K  V  L  G  R  E  L  M  C  Q  L  P  N  K  N  C  L  R  H  N  V  T  I  M  M  M  E  V  L  V  Q  M  H  P  L  T  H  W  K  Q  V  K  S  K  E  E  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0245M17.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103945" stop="103949"/>
                    <exon start="104058" stop="104137"/>
                    <exon start="107721" stop="107905"/>
                    <exon start="108553" stop="108801"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRGCTKAYHPSCIDRDEEFFRAKGRWNCGWHQCTICQKNACYLCYTCTFSLCKGCIKDDVILCVRGNKGFCKNCMRMVKLIEGIGKEENDGPIDFDDKSSFEYLFKDYLMDLKAKLSLSSDEIADAKSPRKGADVSASKQELSQAQRDNNDDGGSGSDASIDTLEASKIKRRK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="104057" e_stop="104137"/>
            <exon e_start="107721" e_stop="107905"/>
            <exon e_start="108553" e_stop="108936"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104057" e_stop="104137" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.994">
            <gDNA_intron_boundary i_start="104138" i_stop="107720" i_length="3583"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107721" e_stop="107905" e_length="185"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.981">
            <gDNA_intron_boundary i_start="107906" i_stop="108552" i_length="647"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="108553" e_stop="108936" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104057" stop="104137"/>
              <exon start="107721" stop="107905"/>
              <exon start="108553" stop="108936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334316" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGGTTGTACGAAAGCATATCATCCCTCGTGTATTGATAGGGATGAGGAATTTTTTCGTGCCAAGGGTCGATGGAATTGTG : GTTGGCATCAGTGCACTATTTGTCAGAAGAATGCTTGCTATTTGTGCTACACATGCACATTTTCATTATGCAAGGGGTGCATAAAAGATGATGTCATCCTATGTGTAAGAGGAAACAAGGGATTTTGCAAGAACTGCATGAGAATGGTCAAGCTAATAGAAGGCATTGGTAAAGAAGAGAATGAT : GGTCCGATAGATTTTGATGACAAGAGTAGCTTTGAATATCTGTTCAAGGACTACTTAATGGATTTAAAAGCGAAGCTATCTTTATCTTCAGATGAAATTGCTGATGCCAAAAGTCCTCGGAAGGGAGCTGATGTGTCAGCTTCCAAACAAGAACTGTCTCAGGCACAACGTGACAATAATGATGATGGAGGTTCTGGTTCAGATGCATCCATTGACACATTGGAAGCAAGTAAAATCAAAAGAAGAAAGCTAAGAAAACGTTCGAAATCTATCAGAAAGGAAGAGGATGCCACAACTACGGCTGTTACTATTAGCGAAGGCTTCTCCACTGCTGGCACCACTGAGTGGGCATCAAAAGAGCTGCTTGAATTTGTTAAGCATATG</gDNA_template>
            <first_frame> G  V  V  R  K  H  I  I  P  R  V  L  I  G  M  R  N  F  F  V  P  R  V  D  G  I  V  :  V  G  I  S  A  L  F  V  R  R  M  L  A  I  C  A  T  H  A  H  F  H  Y  A  R  G  A  *  K  M  M  S  S  Y  V  *  E  E  T  R  D  F  A  R  T  A  *  E  W  S  S  *  *  K  A  L  V  K  K  R  M  M :   V  R  *  I  L  M  T  R  V  A  L  N  I  C  S  R  T  T  *  W  I  *  K  R  S  Y  L  Y  L  Q  M  K  L  L  M  P  K  V  L  G  R  E  L  M  C  Q  L  P  N  K  N  C  L  R  H  N  V  T  I  M  M  M  E  V  L  V  Q  M  H  P  L  T  H  W  K  Q  V  K  S  K  E  E  S  *  E  N  V  R  N  L  S  E  R  K  R  M  P  Q  L  R  L  L  L  L  A  K  A  S  P  L  L  A  P  L  S  G  H  Q  K  S  C  L  N  L  L  S  I   </first_frame>
            <second_frame>  G  L  Y  E  S  I  S  S  L  V  Y  *  *  G  *  G  I  F  S  C  Q  G  S  M  E  L  W :   L  A  S  V  H  Y  L  S  E  E  C  L  L  F  V  L  H  M  H  I  F  I  M  Q  G  V  H  K  R  *  C  H  P  M  C  K  R  K  Q  G  I  L  Q  E  L  H  E  N  G  Q  A  N  R  R  H  W  *  R  R  E  *   : W  S  D  R  F  *  *  Q  E  *  L  *  I  S  V  Q  G  L  L  N  G  F  K  S  E  A  I  F  I  F  R  *  N  C  *  C  Q  K  S  S  E  G  S  *  C  V  S  F  Q  T  R  T  V  S  G  T  T  *  Q  *  *  *  W  R  F  W  F  R  C  I  H  *  H  I  G  S  K  *  N  Q  K  K  K  A  K  K  T  F  E  I  Y  Q  K  G  R  G  C  H  N  Y  G  C  Y  Y  *  R  R  L  L  H  C  W  H  H  *  V  G  I  K  R  A  A  *  I  C  *  A  Y  </second_frame>
            <third_frame>   G  C  T  K  A  Y  H  P  S  C  I  D  R  D  E  E  F  F  R  A  K  G  R  W  N  C   : G  W  H  Q  C  T  I  C  Q  K  N  A  C  Y  L  C  Y  T  C  T  F  S  L  C  K  G  C  I  K  D  D  V  I  L  C  V  R  G  N  K  G  F  C  K  N  C  M  R  M  V  K  L  I  E  G  I  G  K  E  E  N  D  :  G  P  I  D  F  D  D  K  S  S  F  E  Y  L  F  K  D  Y  L  M  D  L  K  A  K  L  S  L  S  S  D  E  I  A  D  A  K  S  P  R  K  G  A  D  V  S  A  S  K  Q  E  L  S  Q  A  Q  R  D  N  N  D  D  G  G  S  G  S  D  A  S  I  D  T  L  E  A  S  K  I  K  R  R  K  L  R  K  R  S  K  S  I  R  K  E  E  D  A  T  T  T  A  V  T  I  S  E  G  F  S  T  A  G  T  T  E  W  A  S  K  E  L  L  E  F  V  K  H  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0245M17.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104059" stop="104137"/>
                    <exon start="107721" stop="107905"/>
                    <exon start="108553" stop="108936"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCTKAYHPSCIDRDEEFFRAKGRWNCGWHQCTICQKNACYLCYTCTFSLCKGCIKDDVILCVRGNKGFCKNCMRMVKLIEGIGKEENDGPIDFDDKSSFEYLFKDYLMDLKAKLSLSSDEIADAKSPRKGADVSASKQELSQAQRDNNDDGGSGSDASIDTLEASKIKRRKLRKRSKSIRKEEDATTTAVTISEGFSTAGTTEWASKELLEFVKHM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="116266" PGL_stop="117638"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116266" e_stop="117638"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="116266" e_stop="117638" e_length="1373"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116266" stop="116943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116266" stop="116902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116445" stop="117228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116775" stop="117638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116775" stop="117600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116823" stop="117567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117068" stop="117558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117133" stop="117608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222156" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAAATAATTATGTGAATTCTGGTAGTGATTTTGGTCTAGTGCCTACTTCTGAACAGGTCATTGCTGCACAATCTGGATATTCTTTGCAAAATGCTCAATCATTTGCTGCTAGTGAGCAACAGACAGCACTGATTAATAGCCAACTTGGTGCACAACATGCAGCTCTCCAGTCAGTATCTCTTAATATGCAGAACCCTAGTGTGGATGTCCATACATGGGTTGCTACAGCACCTTCTAAGGGAGAGCCGAACATTTCTGCTCTGGCACCAGGGCAGTCCCAGGGATATGGTAATTGGGGTACTACATCCTCATCTGTACAGAATCTTGCTGGCAATTTTTCAAATGCAGGTGCCTCAGTTTTGCCTCAGCCTGATTATTGGAGCACACCAGCTCAAGGCAGCCAACAGATCATACAGCCTACAACTGTGCCTAGTGTTCCATGGGGTGCTGGTTTGCAAGAGAATGCGAGTTCTGCTTCAGCATTAAGACCTGAGAATAACACTGGCTGGGGTATGATGCCTGGAAATCCAAATGTGGGCTGGGGAGGACCCGTACCAGCAGTCATGAATGTAAATTGGGGAGCAGTTCAGGCAATGCCTCCGGGGGCTGTAAATCCTGGTTGGGCTCCGACTGGGCCACTCCCTGGGAATCTGAATCCTGGATGGGTTGCACAATCTGGGAATGCTGGTGTTCAGGGCTTGACACCTGGGAATGCCAATCCAGGTTGGGTTGCTCCAACAGGGAGCATGGGTTCAACTATTCAAGGGCCTACATCTGGTAATGGGTGGGGTATGGGAAGTGGAAATCCTGGAGCACTTGTCCAAAGACCGCTACCTCATGGAGATTCAAATCAAGGTAGGGGTGGAGCTAATGGGAATCGGGGCACAAGAAATAATGATCAGCATCAAGATGGGAGATTCTCTGGTCAGAGGGACAAGGGTAGGAACTGGGATAGGCAATCGTCTTTTGGGAGTAGAGGGCCGTCTAGAGGTGGCTTCAAAAAGAATAATGTGCCCTGCCCATATAATACAAACAATCGATGCATAAAGGGTGATAAATGCAATTATCTTCATGGCTAATCAGGAGGAAACAGAGTAGTAGTAGGAGAGTAAAGTGATTTTGTACAGTGATTTCGTCTCAGTTGTCTTTTAGTATATAGGTCTGTTCTATAATTGTAAACTTGTGCAGATTAGTTGCTCCCCGCCCTCTTCTGATCTGATGCAGTTTTTGCAGTAGCTAGGTTCATCCTGCCTATGTTATCAGCTTCTAATAAAGCAGACAGCGGGCATTATGGCCAAATATTTAGCCTAGTTTCATATTTATGGATTTTGCTGTTCTAGACTTGGAATCATGGCATTTATGAACTGTGTC</gDNA_template>
            <first_frame> G  K  *  L  C  E  F  W  *  *  F  W  S  S  A  Y  F  *  T  G  H  C  C  T  I  W  I  F  F  A  K  C  S  I  I  C  C  *  *  A  T  D  S  T  D  *  *  P  T  W  C  T  T  C  S  S  P  V  S  I  S  *  Y  A  E  P  *  C  G  C  P  Y  M  G  C  Y  S  T  F  *  G  R  A  E  H  F  C  S  G  T  R  A  V  P  G  I  W  *  L  G  Y  Y  I  L  I  C  T  E  S  C  W  Q  F  F  K  C  R  C  L  S  F  A  S  A  *  L  L  E  H  T  S  S  R  Q  P  T  D  H  T  A  Y  N  C  A  *  C  S  M  G  C  W  F  A  R  E  C  E  F  C  F  S  I  K  T  *  E  *  H  W  L  G  Y  D  A  W  K  S  K  C  G  L  G  R  T  R  T  S  S  H  E  C  K  L  G  S  S  S  G  N  A  S  G  G  C  K  S  W  L  G  S  D  W  A  T  P  W  E  S  E  S  W  M  G  C  T  I  W  E  C  W  C  S  G  L  D  T  W  E  C  Q  S  R  L  G  C  S  N  R  E  H  G  F  N  Y  S  R  A  Y  I  W  *  W  V  G  Y  G  K  W  K  S  W  S  T  C  P  K  T  A  T  S  W  R  F  K  S  R  *  G  W  S  *  W  E  S  G  H  K  K  *  *  S  A  S  R  W  E  I  L  W  S  E  G  Q  G  *  E  L  G  *  A  I  V  F  W  E  *  R  A  V  *  R  W  L  Q  K  E  *  C  A  L  P  I  *  Y  K  Q  S  M  H  K  G  *  *  M  Q  L  S  S  W  L  I  R  R  K  Q  S  S  S  R  R  V  K  *  F  C  T  V  I  S  S  Q  L  S  F  S  I  *  V  C  S  I  I  V  N  L  C  R  L  V  A  P  R  P  L  L  I  *  C  S  F  C  S  S  *  V  H  P  A  Y  V  I  S  F  *  *  S  R  Q  R  A  L  W  P  N  I  *  P  S  F  I  F  M  D  F  A  V  L  D  L  E  S  W  H  L  *  T  V   </first_frame>
            <second_frame>  E  N  N  Y  V  N  S  G  S  D  F  G  L  V  P  T  S  E  Q  V  I  A  A  Q  S  G  Y  S  L  Q  N  A  Q  S  F  A  A  S  E  Q  Q  T  A  L  I  N  S  Q  L  G  A  Q  H  A  A  L  Q  S  V  S  L  N  M  Q  N  P  S  V  D  V  H  T  W  V  A  T  A  P  S  K  G  E  P  N  I  S  A  L  A  P  G  Q  S  Q  G  Y  G  N  W  G  T  T  S  S  S  V  Q  N  L  A  G  N  F  S  N  A  G  A  S  V  L  P  Q  P  D  Y  W  S  T  P  A  Q  G  S  Q  Q  I  I  Q  P  T  T  V  P  S  V  P  W  G  A  G  L  Q  E  N  A  S  S  A  S  A  L  R  P  E  N  N  T  G  W  G  M  M  P  G  N  P  N  V  G  W  G  G  P  V  P  A  V  M  N  V  N  W  G  A  V  Q  A  M  P  P  G  A  V  N  P  G  W  A  P  T  G  P  L  P  G  N  L  N  P  G  W  V  A  Q  S  G  N  A  G  V  Q  G  L  T  P  G  N  A  N  P  G  W  V  A  P  T  G  S  M  G  S  T  I  Q  G  P  T  S  G  N  G  W  G  M  G  S  G  N  P  G  A  L  V  Q  R  P  L  P  H  G  D  S  N  Q  G  R  G  G  A  N  G  N  R  G  T  R  N  N  D  Q  H  Q  D  G  R  F  S  G  Q  R  D  K  G  R  N  W  D  R  Q  S  S  F  G  S  R  G  P  S  R  G  G  F  K  K  N  N  V  P  C  P  Y  N  T  N  N  R  C  I  K  G  D  K  C  N  Y  L  H  G  *  S  G  G  N  R  V  V  V  G  E  *  S  D  F  V  Q  *  F  R  L  S  C  L  L  V  Y  R  S  V  L  *  L  *  T  C  A  D  *  L  L  P  A  L  F  *  S  D  A  V  F  A  V  A  R  F  I  L  P  M  L  S  A  S  N  K  A  D  S  G  H  Y  G  Q  I  F  S  L  V  S  Y  L  W  I  L  L  F  *  T  W  N  H  G  I  Y  E  L  C  </second_frame>
            <third_frame>   K  I  I  M  *  I  L  V  V  I  L  V  *  C  L  L  L  N  R  S  L  L  H  N  L  D  I  L  C  K  M  L  N  H  L  L  L  V  S  N  R  Q  H  *  L  I  A  N  L  V  H  N  M  Q  L  S  S  Q  Y  L  L  I  C  R  T  L  V  W  M  S  I  H  G  L  L  Q  H  L  L  R  E  S  R  T  F  L  L  W  H  Q  G  S  P  R  D  M  V  I  G  V  L  H  P  H  L  Y  R  I  L  L  A  I  F  Q  M  Q  V  P  Q  F  C  L  S  L  I  I  G  A  H  Q  L  K  A  A  N  R  S  Y  S  L  Q  L  C  L  V  F  H  G  V  L  V  C  K  R  M  R  V  L  L  Q  H  *  D  L  R  I  T  L  A  G  V  *  C  L  E  I  Q  M  W  A  G  E  D  P  Y  Q  Q  S  *  M  *  I  G  E  Q  F  R  Q  C  L  R  G  L  *  I  L  V  G  L  R  L  G  H  S  L  G  I  *  I  L  D  G  L  H  N  L  G  M  L  V  F  R  A  *  H  L  G  M  P  I  Q  V  G  L  L  Q  Q  G  A  W  V  Q  L  F  K  G  L  H  L  V  M  G  G  V  W  E  V  E  I  L  E  H  L  S  K  D  R  Y  L  M  E  I  Q  I  K  V  G  V  E  L  M  G  I  G  A  Q  E  I  M  I  S  I  K  M  G  D  S  L  V  R  G  T  R  V  G  T  G  I  G  N  R  L  L  G  V  E  G  R  L  E  V  A  S  K  R  I  M  C  P  A  H  I  I  Q  T  I  D  A  *  R  V  I  N  A  I  I  F  M  A  N  Q  E  E  T  E  *  *  *  E  S  K  V  I  L  Y  S  D  F  V  S  V  V  F  *  Y  I  G  L  F  Y  N  C  K  L  V  Q  I  S  C  S  P  P  S  S  D  L  M  Q  F  L  Q  *  L  G  S  S  C  L  C  Y  Q  L  L  I  K  Q  T  A  G  I  M  A  K  Y  L  A  *  F  H  I  Y  G  F  C  C  S  R  L  G  I  M  A  F  M  N  C  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0245M17.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116267" stop="117346"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1077</number_coding_nucleotides>
                  <number_encoded_amino_acids>359</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENNYVNSGSDFGLVPTSEQVIAAQSGYSLQNAQSFAASEQQTALINSQLGAQHAALQSVSLNMQNPSVDVHTWVATAPSKGEPNISALAPGQSQGYGNWGTTSSSVQNLAGNFSNAGASVLPQPDYWSTPAQGSQQIIQPTTVPSVPWGAGLQENASSASALRPENNTGWGMMPGNPNVGWGGPVPAVMNVNWGAVQAMPPGAVNPGWAPTGPLPGNLNPGWVAQSGNAGVQGLTPGNANPGWVAPTGSMGSTIQGPTSGNGWGMGSGNPGALVQRPLPHGDSNQGRGGANGNRGTRNNDQHQDGRFSGQRDKGRNWDRQSSFGSRGPSRGGFKKNNVPCPYNTNNRCIKGDKCNYLHG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="117645" PGL_stop="116922"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117645" e_stop="116922"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="117645" e_stop="116922" e_length="724"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117645" stop="116922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421153" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTTGTGACACAGTTCATAAATGCCATGATTCCAAGTCTAGAACAGCAAAATCCATAAATATGAAACTAGGCTAAATATTTGGCCATAATGCCCGCTGTCTGCTTTATTAGAAGCTGATAACATAGGCAGGATGAACCTAGCTACTGCAAAAACTGCATCAGATCAGAAGAGGGCGGGGAGCAACTAATCTGCACAAGTTTACAATTATAGAACAGACCTATATACTAAAAGACAACTGAGACGAAATCACTGTACAAAATCACTTTACTCTCCTACTACTACTCTGTTTCCTCCTGATTAGCCATGAAGATAATTGCATTTATCACCCTTTATGCATCGATTGTTTGTATTATATGGGCAGGGCACATTATTCTTTTTGAAGCCACCTCTAGACGGCCCTCTACTCCCAAAAGACGATTGCCTATCCCAGTTCCTACCCTTGTCCCTCTGACCAGAGAATCTCCCATCTTGATGCTGATCATTATTTCTTGTGCCCCGATTCCCATTAGCTCCACCCCTACCTTGATTTGAATCTCCATGAGGTAGCGGTCTTTGGACAAGTGCTCCAGGATTTCCACTTCCCATACCCCACCCATTACCAGATGTAGGCCCTTGAATAGTTGAACCCATGCTCCCTGTTGGAGCAACCCAACCTGGATTGGCATTCCCAGGTGTCAAGCCCTGAACACCAGCATTCCCAGATTGTGCAACCCATCCAGGAT</gDNA_template>
            <first_frame> S  L  *  H  S  S  *  M  P  *  F  Q  V  *  N  S  K  I  H  K  Y  E  T  R  L  N  I  W  P  *  C  P  L  S  A  L  L  E  A  D  N  I  G  R  M  N  L  A  T  A  K  T  A  S  D  Q  K  R  A  G  S  N  *  S  A  Q  V  Y  N  Y  R  T  D  L  Y  T  K  R  Q  L  R  R  N  H  C  T  K  S  L  Y  S  P  T  T  T  L  F  P  P  D  *  P  *  R  *  L  H  L  S  P  F  M  H  R  L  F  V  L  Y  G  Q  G  T  L  F  F  L  K  P  P  L  D  G  P  L  L  P  K  D  D  C  L  S  Q  F  L  P  L  S  L  *  P  E  N  L  P  S  *  C  *  S  L  F  L  V  P  R  F  P  L  A  P  P  L  P  *  F  E  S  P  *  G  S  G  L  W  T  S  A  P  G  F  P  L  P  I  P  H  P  L  P  D  V  G  P  *  I  V  E  P  M  L  P  V  G  A  T  Q  P  G  L  A  F  P  G  V  K  P  *  T  P  A  F  P  D  C  A  T  H  P  G  </first_frame>
            <second_frame>  L  C  D  T  V  H  K  C  H  D  S  K  S  R  T  A  K  S  I  N  M  K  L  G  *  I  F  G  H  N  A  R  C  L  L  Y  *  K  L  I  T  *  A  G  *  T  *  L  L  Q  K  L  H  Q  I  R  R  G  R  G  A  T  N  L  H  K  F  T  I  I  E  Q  T  Y  I  L  K  D  N  *  D  E  I  T  V  Q  N  H  F  T  L  L  L  L  L  C  F  L  L  I  S  H  E  D  N  C  I  Y  H  P  L  C  I  D  C  L  Y  Y  M  G  R  A  H  Y  S  F  *  S  H  L  *  T  A  L  Y  S  Q  K  T  I  A  Y  P  S  S  Y  P  C  P  S  D  Q  R  I  S  H  L  D  A  D  H  Y  F  L  C  P  D  S  H  *  L  H  P  Y  L  D  L  N  L  H  E  V  A  V  F  G  Q  V  L  Q  D  F  H  F  P  Y  P  T  H  Y  Q  M  *  A  L  E  *  L  N  P  C  S  L  L  E  Q  P  N  L  D  W  H  S  Q  V  S  S  P  E  H  Q  H  S  Q  I  V  Q  P  I  Q  D </second_frame>
            <third_frame>   F  V  T  Q  F  I  N  A  M  I  P  S  L  E  Q  Q  N  P  *  I  *  N  *  A  K  Y  L  A  I  M  P  A  V  C  F  I  R  S  *  *  H  R  Q  D  E  P  S  Y  C  K  N  C  I  R  S  E  E  G  G  E  Q  L  I  C  T  S  L  Q  L  *  N  R  P  I  Y  *  K  T  T  E  T  K  S  L  Y  K  I  T  L  L  S  Y  Y  Y  S  V  S  S  *  L  A  M  K  I  I  A  F  I  T  L  Y  A  S  I  V  C  I  I  W  A  G  H  I  I  L  F  E  A  T  S  R  R  P  S  T  P  K  R  R  L  P  I  P  V  P  T  L  V  P  L  T  R  E  S  P  I  L  M  L  I  I  I  S  C  A  P  I  P  I  S  S  T  P  T  L  I  *  I  S  M  R  *  R  S  L  D  K  C  S  R  I  S  T  S  H  T  P  P  I  T  R  C  R  P  L  N  S  *  T  H  A  P  C  W  S  N  P  T  W  I  G  I  P  R  C  Q  A  L  N  T  S  I  P  R  L  C  N  P  S  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0245M17.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117346" stop="117113"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAMKIIAFITLYASIVCIIWAGHIILFEATSRRPSTPKRRLPIPVPTLVPLTRESPILMLIIISCAPIPISSTPTLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="123081" PGL_stop="123652"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123081" e_stop="123652"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="123081" e_stop="123652" e_length="572"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123081" stop="123652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAACATAAGCTTTGTTCAACTGTTTCTCTGGGAACAGCACTTGTTGATATGTATGCCAAATGCGGCAACATTGAAAAAATGCTTCAGGTTTTTCACGCGATGCCCATCAGAAACTCATTGACTTGGACAGCTGCAATTGGCGCCTTAGCGCATCATGGAAATGGGCATGATGCTCTATCATATTTTTTAAAGATGGTTGACAGTGGTCTGAGACCAGATGATGTCACATTTCTTGGGGTCTTGTCAGCTTGTTGTCATGGAGGTTTGGTTGAAGAAGGGAGAAAGTTTTTTACTCAAATGACCACAAAGTTCAACATTCTGCCTAAATCTAAACATTACGCTTGCATGGTGGACCTTTTGGGCAGGGCAGGGCTTCTGGAAGAAGCTTATGAGCTTGTCCGTGGAGTGCCAAATGAGGCTGATGCTTCGGTATGGGGAGCATTGTTTTTCGCTTGTCGAGTTCACAGGAACATTGAGATGGGGGAAAAGGCAGCTCTGAAACTTCTTGAATTGGATCCTGGTGATAGTGGAACTTATGTCTTACTTGCTAACATGTATGTTGAAGCAAA</gDNA_template>
            <first_frame> K  K  H  K  L  C  S  T  V  S  L  G  T  A  L  V  D  M  Y  A  K  C  G  N  I  E  K  M  L  Q  V  F  H  A  M  P  I  R  N  S  L  T  W  T  A  A  I  G  A  L  A  H  H  G  N  G  H  D  A  L  S  Y  F  L  K  M  V  D  S  G  L  R  P  D  D  V  T  F  L  G  V  L  S  A  C  C  H  G  G  L  V  E  E  G  R  K  F  F  T  Q  M  T  T  K  F  N  I  L  P  K  S  K  H  Y  A  C  M  V  D  L  L  G  R  A  G  L  L  E  E  A  Y  E  L  V  R  G  V  P  N  E  A  D  A  S  V  W  G  A  L  F  F  A  C  R  V  H  R  N  I  E  M  G  E  K  A  A  L  K  L  L  E  L  D  P  G  D  S  G  T  Y  V  L  L  A  N  M  Y  V  E  A   </first_frame>
            <second_frame>  K  N  I  S  F  V  Q  L  F  L  W  E  Q  H  L  L  I  C  M  P  N  A  A  T  L  K  K  C  F  R  F  F  T  R  C  P  S  E  T  H  *  L  G  Q  L  Q  L  A  P  *  R  I  M  E  M  G  M  M  L  Y  H  I  F  *  R  W  L  T  V  V  *  D  Q  M  M  S  H  F  L  G  S  C  Q  L  V  V  M  E  V  W  L  K  K  G  E  S  F  L  L  K  *  P  Q  S  S  T  F  C  L  N  L  N  I  T  L  A  W  W  T  F  W  A  G  Q  G  F  W  K  K  L  M  S  L  S  V  E  C  Q  M  R  L  M  L  R  Y  G  E  H  C  F  S  L  V  E  F  T  G  T  L  R  W  G  K  R  Q  L  *  N  F  L  N  W  I  L  V  I  V  E  L  M  S  Y  L  L  T  C  M  L  K  Q  </second_frame>
            <third_frame>   K  T  *  A  L  F  N  C  F  S  G  N  S  T  C  *  Y  V  C  Q  M  R  Q  H  *  K  N  A  S  G  F  S  R  D  A  H  Q  K  L  I  D  L  D  S  C  N  W  R  L  S  A  S  W  K  W  A  *  C  S  I  I  F  F  K  D  G  *  Q  W  S  E  T  R  *  C  H  I  S  W  G  L  V  S  L  L  S  W  R  F  G  *  R  R  E  K  V  F  Y  S  N  D  H  K  V  Q  H  S  A  *  I  *  T  L  R  L  H  G  G  P  F  G  Q  G  R  A  S  G  R  S  L  *  A  C  P  W  S  A  K  *  G  *  C  F  G  M  G  S  I  V  F  R  L  S  S  S  Q  E  H  *  D  G  G  K  G  S  S  E  T  S  *  I  G  S  W  *  *  W  N  L  C  L  T  C  *  H  V  C  *  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0245M17.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123081" stop="123650"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKHKLCSTVSLGTALVDMYAKCGNIEKMLQVFHAMPIRNSLTWTAAIGALAHHGNGHDALSYFLKMVDSGLRPDDVTFLGVLSACCHGGLVEEGRKFFTQMTTKFNILPKSKHYACMVDLLGRAGLLEEAYELVRGVPNEADASVWGALFFACRVHRNIEMGEKAALKLLELDPGDSGTYVLLANMYVEA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="131571" PGL_stop="129398"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="131571" e_stop="131387"/>
            <exon e_start="130187" e_stop="130093"/>
            <exon e_start="130019" e_stop="129855"/>
            <exon e_start="129747" e_stop="129398"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.864" acc_prob="0.768" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="131571" e_stop="131387" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.989">
            <gDNA_intron_boundary i_start="131386" i_stop="130188" i_length="1199"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="130187" e_stop="130093" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.864" acc_prob="0.768">
            <gDNA_intron_boundary i_start="130092" i_stop="130020" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="130019" e_stop="129855" e_length="165"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.976">
            <gDNA_intron_boundary i_start="129854" i_stop="129748" i_length="107"/>
          </intron>
          <exon e_serial="4" e_score="0.980">
            <gDNA_exon_boundary e_start="129747" e_stop="129398" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131571" stop="131387"/>
              <exon start="130187" stop="130093"/>
              <exon start="130019" stop="129855"/>
              <exon start="129747" stop="129398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131568" stop="131387"/>
              <exon start="130187" stop="130093"/>
              <exon start="130019" stop="129859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323777" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTCTCTCTCATGCCATTTTCACACAAAGGAGAAAAAAAAAAAGAAGAAGAGAGAACAACTTTGATGAACTGCATAAGGCATTCAATAAAGCAAACAAACAAATGTCGGTTCTTTAATCTCTTTATTATTCTTCCTTTCTTCACCACCTTATCTTCCATTTTCATTTTCTCAATCTCAAAAATG : GATTGCTAAAACTGAAGAGGATCCACATTTATTATCTTGGAATCGGAGTTTCATATGTTGATTGTTCTTCTCTGTGCTCTCCAGAAGACTTAGTG : TCTGCTGCAGAATAGTAATTCACCATGAACTGGAATCAGCAAACGGAAATTTATTATACAAATGGTGCTATGCCTTATAATTCAATTGGAAGTTTTATGGATTTCTTTGGAGGTGTTACGTATGACCATGTTAATTATATATTTGCTGATCCTCCCTATGCTCAG : GATGTGCAAAATAACTTGTACAATGAGGGTGCAATTGGAACAGTCAATAAGTTCTACACTTGTAGAATTAACTTTGCAACCTGGACATTTTAAAAATCATGATAGGATAAGCATATATTACTAGCAGTGCTCATGAATATGAAAAGAAGTCCATGAGAAAGTGGAAGTTTGTTTATCAAGTATGTGCTGTTCTATATGCACATACATTTACTCTAGTAGTGTGCATAGAGAAAACTTAGAACCATGCCTTAGTACACATAAACAACATGTATCAACTGCATAATTAGCAACTATGCTGCATCTGAAGGACACTAGCTTTCAATTGCTCTATTCTGCTACAAACTGCTAAG</gDNA_template>
            <first_frame> F  S  L  S  C  H  F  H  T  K  E  K  K  K  K  K  K  R  E  Q  L  *  *  T  A  *  G  I  Q  *  S  K  Q  T  N  V  G  S  L  I  S  L  L  F  F  L  S  S  P  P  Y  L  P  F  S  F  S  Q  S  Q  K  W :   I  A  K  T  E  E  D  P  H  L  L  S  W  N  R  S  F  I  C  *  L  F  F  S  V  L  S  R  R  L  S   : V  C  C  R  I  V  I  H  H  E  L  E  S  A  N  G  N  L  L  Y  K  W  C  Y  A  L  *  F  N  W  K  F  Y  G  F  L  W  R  C  Y  V  *  P  C  *  L  Y  I  C  *  S  S  L  C  S   : G  C  A  K  *  L  V  Q  *  G  C  N  W  N  S  Q  *  V  L  H  L  *  N  *  L  C  N  L  D  I  L  K  I  M  I  G  *  A  Y  I  T  S  S  A  H  E  Y  E  K  K  S  M  R  K  W  K  F  V  Y  Q  V  C  A  V  L  Y  A  H  T  F  T  L  V  V  C  I  E  K  T  *  N  H  A  L  V  H  I  N  N  M  Y  Q  L  H  N  *  Q  L  C  C  I  *  R  T  L  A  F  N  C  S  I  L  L  Q  T  A  K </first_frame>
            <second_frame>  S  L  S  H  A  I  F  T  Q  R  R  K  K  K  R  R  R  E  N  N  F  D  E  L  H  K  A  F  N  K  A  N  K  Q  M  S  V  L  *  S  L  Y  Y  S  S  F  L  H  H  L  I  F  H  F  H  F  L  N  L  K  N   : G  L  L  K  L  K  R  I  H  I  Y  Y  L  G  I  G  V  S  Y  V  D  C  S  S  L  C  S  P  E  D  L  V  :  S  A  A  E  *  *  F  T  M  N  W  N  Q  Q  T  E  I  Y  Y  T  N  G  A  M  P  Y  N  S  I  G  S  F  M  D  F  F  G  G  V  T  Y  D  H  V  N  Y  I  F  A  D  P  P  Y  A  Q  :  D  V  Q  N  N  L  Y  N  E  G  A  I  G  T  V  N  K  F  Y  T  C  R  I  N  F  A  T  W  T  F  *  K  S  *  *  D  K  H  I  L  L  A  V  L  M  N  M  K  R  S  P  *  E  S  G  S  L  F  I  K  Y  V  L  F  Y  M  H  I  H  L  L  *  *  C  A  *  R  K  L  R  T  M  P  *  Y  T  *  T  T  C  I  N  C  I  I  S  N  Y  A  A  S  E  G  H  *  L  S  I  A  L  F  C  Y  K  L  L   </second_frame>
            <third_frame>   L  S  L  M  P  F  S  H  K  G  E  K  K  K  E  E  E  R  T  T  L  M  N  C  I  R  H  S  I  K  Q  T  N  K  C  R  F  F  N  L  F  I  I  L  P  F  F  T  T  L  S  S  I  F  I  F  S  I  S  K  M  :  D  C  *  N  *  R  G  S  T  F  I  I  L  E  S  E  F  H  M  L  I  V  L  L  C  A  L  Q  K  T  *  C :   L  L  Q  N  S  N  S  P  *  T  G  I  S  K  R  K  F  I  I  Q  M  V  L  C  L  I  I  Q  L  E  V  L  W  I  S  L  E  V  L  R  M  T  M  L  I  I  Y  L  L  I  L  P  M  L  R :   M  C  K  I  T  C  T  M  R  V  Q  L  E  Q  S  I  S  S  T  L  V  E  L  T  L  Q  P  G  H  F  K  N  H  D  R  I  S  I  Y  Y  *  Q  C  S  *  I  *  K  E  V  H  E  K  V  E  V  C  L  S  S  M  C  C  S  I  C  T  Y  I  Y  S  S  S  V  H  R  E  N  L  E  P  C  L  S  T  H  K  Q  H  V  S  T  A  *  L  A  T  M  L  H  L  K  D  T  S  F  Q  L  L  Y  S  A  T  N  C  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0245M17.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129991" stop="129855"/>
                    <exon start="129747" stop="129624"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TGISKRKFIIQMVLCLIIQLEVLWISLEVLRMTMLIIYLLILPMLRMCKITCTMRVQLEQSISSTLVELTLQPGHFKNHDRISIYY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0245M17.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="130001" stop="129855"/>
                    <exon start="129747" stop="129655"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTMNWNQQTEIYYTNGAMPYNSIGSFMDFFGGVTYDHVNYIFADPPYAQDVQNNLYNEGAIGTVNKFYTCRINFATWTF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 755 chains have been computed
$ 
$ memory statistics:
$ 1039512 bytes spliced alignments in total
$ 455 spliced alignments have been stored
$ 2284 bytes was the average size of a spliced alignment
$ 38928 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 2780 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 840 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 05:57:55
-->
