<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 05:36:42"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704980" ref_strand="+" ref_description="SGN-E704980 [FA25DC10]">
      <seq>cacactttatctccatctggtaaactgttttgctactctgctcctctttctctctcctttccaccggaattattgtgattttaaaggaggttgtaagcagatatgccatcagatactgcaagagaaaatgcatctatagctaattccattgagaccgactggaaaaatgaaagagggaatcttggcggaccagatagttcaagcctcagagttaatgaggacacgaatcgttctatagcagaggagctcacttcatctctgccaattggaatttcaagtgcaattgaaaaggtaaacagagggatttgggctactcaagccatgaatgaggccattttggatgaagcatttcataattccagcaaggttatactaatattcagtgtcaacatgagtgggtatttccaagggtacgcccaaatgatttcttcagtcggtttgagaagagaccaagtatggagtcaaggaaatggtggtcgtaatccttggggtcgaagctttgaagtgaattggctgcgattgtatgatctgcctttccaaagaactcttcaccttaagaatccatggaatcaatacaaaccagtcaaaattagtagagattgtcaggagttacctccagatattggtgaagctttatgtgagcttcttgatggaaaggatgctttggatgttgatttgaaaatggatatctttgcaaggaatgatttctcttctaaaaggccatatgtagagccttcactgcatcttggagatcaagactgtaatgcatctctgatacctaatgggactatgttttatccctctttactctaccaacatcaaattgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="9610" stop="14468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9909" g_stop="10018" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="193" r_length="110" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10019" i_stop="13099" i_length="3081">
            <donor d_prob="0.553" d_score="0.86"/>
            <acceptor a_prob="0.921" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13100" g_stop="13201" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="292" r_length="99" r_score="0.902"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13202" i_stop="13267" i_length="66">
            <donor d_prob="0.918" d_score="0.88"/>
            <acceptor a_prob="0.731" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13268" g_stop="13329" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="354" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13330" i_stop="13443" i_length="114">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.635" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13444" g_stop="13695" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="606" r_length="252" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13696" i_stop="13796" i_length="101">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13797" g_stop="13873" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="683" r_length="77" r_score="0.961"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13874" i_stop="14020" i_length="147">
            <donor d_prob="0.569" d_score="0.94"/>
            <acceptor a_prob="0.969" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14021" g_stop="14168" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="831" r_length="148" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E704980" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9909" e_stop="10018"/>
          <exon e_start="13100" e_stop="13201"/>
          <exon e_start="13268" e_stop="13329"/>
          <exon e_start="13444" e_stop="13695"/>
          <exon e_start="13797" e_stop="13873"/>
          <exon e_start="14021" e_stop="14168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAGGTTGTAAGCAGATATGCCATCAGATACTGCAAGAAAAAATGCAGCTATAGCTAATTCCATAGTGACCGACTACAAAAATGAAAGAAGGAATTTTGACGGACCAGGTAACTCTGATGCGAAATCTATTCAGAATTTAGCTATCTGTGTGGATTTTGTTTTGTTTGTATTTTTTTTTTTAGTAGTTTCTACTGAGATTTGTTACAAGGTTTCGTTGAATGTGTCTGCATGACAAAGACAAGGATGTGGTCATTTACACTGCCCACAATTTAATATTGGTGCAAAAGTTGTATGCTTCAAATAATCTTTTGGCTGGCTTTTCTATTCAACTGATGAGGAATGAGTATTCTTAAGCGTGTTAGGGATGGCAAAACAATTCCAGTCTTTTCTACTTTGACGGGAGCTTCACTTGAGAATTAGAAAGAGCTTGCTGAATTTGATAGAAAGGAGGTCCACTAGTTAGTAATTAGTGATGCCATGAAGAGTTCTAGTTACTTGCATGGTTTCTTGAGGCTGTAAGGTGGCTTGATATTATTAGGTCTTTCCACTAAACCACGAAAAAGTGAAACTAAGAGCCTGTTTGATTGGGCTTATAGCTTTTGACTTATAAGCCAAAATCCGTAAGTTAGGAGTTCTAACTTATGCTTTTGGCTTTTTTTTTTCCTATTTGGCTTAAGAAACTTAAAAACACTTTTTTATTTTACCCAAACACTACAAAAATGCTTAATAACACTTGAAATAAGTCAATCCGAACAGGCTCTAAATCTTTTCATAATTCAATTATGCGTGTTGTTCATTTGTATGAACAGTCATGGCTGTCTTTGAGATTGTGTAGAACAGTGTTGTGAAAAGCGCGCTTCAAAGCGAGGCGACCCATGTGCGCTTTTTTATCTTGAGGCGAGGCGATCTGAAAAAAGCTCTCGCTTCAGATGAAGAAGCGAGAAGCGACCCTAAGGCAAAAGCGCAATAAAGCGCGCTTTTTATAAAAAAAAGCGACAATTAGGGTTTTTTTTAAAAAAAAAAATTTAGGTTTTTTTTTTAAAAAATAATCTGAAATATAACCTTCTTTCTCCTCGCGACTCTTCTTTCACGACTCTTTGCCTTCTTTCTCTCCTCACGACTCTTCTTTCACAATACTTCTTTCCCTTCTTTCTCTCCTGACGATCTCGACTGAGGCTGCCTCTCTCTTCAACCTCCCGCGACTGCAGGTAACTTTTTGTTCATCTCTGTTTTAGCTAATGTTTATTAGTTCATCTCTATGAGTTCCTTTTCTCTTGAAATATTCAATCTTCGCCTGTGCTTCATCTCTTCATCTCTCTGAGTTTCGACTACTCTAGTTTTTTCTTCTCTTCTCTTCTTTTCTTCATCTCTGCTACCTGCGCTGTTTTTTTTTTTATTTTGTGATCAATCTAGCAGCCTTGTTGAAGAATAGGAGTTTGAATCTTTGTGATTTAATTATATTTTTTATTTTTTGCTTTATATGTTATGACTTATGAGTATTTTTGCCTATGTAATTTCTTTCAATCTAAGACTATATTACCTCTATTTAGTTGTTTAATATTTTTTTATTTTTATACTAAATGTCGCTTTTTTTAAAAAAGCGCGCGCTTCGCTTCACGCTTCTGTGAAGCAAGCCGTCGTCGCTTTTTTCCGCTTCTCGCTTACCAAAACACTGGTGTAGAAGTTTCACACCCTCCATGAATTTGTATGCACAAAAGCAGAGATGGTTTAGATGCACAACTTTTATTCCCTCGAATGAATGTGACACTTCAAGTATCTTTTGGTTGGAAATGCTATGAAGTTCATGGAGCAATTATATCATTTCAACACAATTTGTTGGAGAAACAAAGGGCAAAATCGAACTATAAATGTTACTTATTGATGAGAATAAACACTATGGTTTTTTCCTTTTCTTTTTGTGTTAAAACTCTGTTGTCAGCATCCTTTTCTAACATTCCATCAAGATTTTTGCCCTTGTCTCTAATTAGCCTAATAGTTCTTTTTTTCCACATAATGTCCCTCTTGAGATGCCTTAACTTCTTCATAAGGACATAATCTGGACTTCCAGTTACTTGATAATTTTGCCCCCGTTAATAAAATTACCTTATTCTATAAATAAATTAGTGACGATACAAGGAGTTCAGTTACTTGCATAGCTTATTGAGTATGTACAATCTGTCCTGGCCCCTGTCAGCTACAATCTGGCTTGGCATTAATTTGTTTACAATGTTGTAAAAAAGACATGCGATTGTTGAGAAAGTTGAACCTACAAATTTATGGAGTACTTTACTTATTAAGAATTGGAATCCAATTTCACGCCTTCATAATGAACCTGTGGTGTACATAAAGTTTAGAATCTAATGATAAAACTTTCAACCTGTTGTCTTATTGGATTTTAATATTGCAAATCCTCATAGATACCGTGTAGCATTTTTTGATGATCAGTGTTCAGGATCAGGAGCTAACTCCGTTTTTTTGAAATAGGTAACTTTGTATTATATCACAAAACAGTACATGGGTTGTACTGAAATCATTATATACAATTGTCTCCTTTTCCGCTTGTTTCAGTCTTTATTGAGCCTAAAACAACAATTGCCAATACAATGTCATTAGAGTATACCTGATTACACCAAAAACATAACAATAAAATGCTGTTTAACTTGACTTTCTGGACATAACAATAAATTGTAGTTTAACTTGACTTTTGTAATTATTACGTAGAAAATTCGCAGAAATAGGCTGTGTGCTCATTCATTTTCTTCTGAAAAATGTTTTGAGTTGTTGGAACTTGATGATTGAGTTTCTATGAACAAACAGTTCGAGTTAATTCCTATGCTTGCTATATTGTTTTGGTTGTGAATAATGCTTATTTTTCTTTACTGTGAGTTGTTTAGTATTTTCTGGGCTGTTATATATGCGAATCATCATAGATATCGTGTAGCATCCTTGACGATCAGTGTTCAGGAGCAAACTCCATTTTGTATAATTTCTTGTTAAATTCAACATCTCTCGACTGTAACCTTTATGAAGTTTCACGCTACCTGATCACAGGAATAAAAATTAAATAGAAGATATCTTGTAGCTTCGTTGTCCTTGACATGAATGTAGTGGTTAAATGATAAGTATATGAACTACTATATGCTGGTACATCAAAATGATTCAAATTTGAATATGGACTCTTCTCTCAGATAGTTCATGCCTCAGAGTAAATGAGGATACCAATCGTTCTATAGCAGAGGAGCTCACACTTTCATCTCCGCCGATTGGAATTTCAACTGCAATTGAAAAGGGTAAACTCTATAGCATAAGATATTTTGTAATCAAGAGTTTGAACCATGAAAATATCCAATTATCAGTAAACAGAGGGATTTGGGCTACTCAAGCCATGAATGAGGCCATTTTGGATGAAGCATTTCATGTAAGTCGATTTTCCTTTTATATCCCATGATTATTATAATATAATGCCCATCTGTAATATATATATGCATATAATCTTAAATACAACAAATGATTGTGTTTATTTTGGGAGCAGAATTCCAGCAAGGTTATACTAATATTCAGTGTCAACACTAGTGGGTATTTCCAAGGGTATGCCCAAATGATTTCTTCTGTCGGTTTGAGAAGAGACCAAGTTTGGAGTCAAGGAAATGGTGGTCGTAATTCTTGGGGTCGAAGCTTTGAAGTGAATTGGCTGCGATTGTATGATCTGCCTTTTCAAAGAACTCTTCACCTTAAGAATCCATGGAATCAAAACAAACCAGTCAAAATTAGTAGAGATTGTCAGGCATGGGTTATATTCTTGTCTTAGTACTATTCACTTAATTTTTCAATGTACTCTTGTTAGTAGAGAGGCTTTTATGACCCTGGTACATGTATTGCTAACAGGAGTTACCTCCAGATATTGGTGAAGCTTTATGTGAGCTCCTTGATGGACAGGATGCTTTGGATGTTAATTTGAAAATGTATAGCTCTTTCCTTGAAAACTTAAATAGTGCCCGTTCCATTATTTGGAAACATACAGCCTTTTTTCAAAATTGAATTAGTGCTAGAGTTGTGGAAAAATTGGTCCAAATGATTTTTCTCTTTACAATTGTTATTGGCTCATCCAGGGATGTCTTTGCAAGGAATGAGCTCTCTTCTAAAAGGCCATATGTAGAGCCTTCACTGCATCTTGGAGATCAAGACTATAATGCATCTCTGATACCTAATGGGACCATGTTTTCACCCTCTTTACTCTACCAACATCAAATTGATGCT</genome_strand>
        <mrna_strand>AAGGAGGTTGTAAGCAGATATGCCATCAGATACTGCAAGAGAAAATGCATCTATAGCTAATTCCATTGAGACCGACTGGAAAAATGAAAGAGGGAATCTTGGCGGACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTCAAGCCTCAGAGTTAATGAGGACACGAATCGTTCTATAGCAGAGGAGCT--CAC-TTCATCTCTGCCAATTGGAATTTCAAGTGCAATTGAAAAGG..................................................................TAAACAGAGGGATTTGGGCTACTCAAGCCATGAATGAGGCCATTTTGGATGAAGCATTTCAT..................................................................................................................AATTCCAGCAAGGTTATACTAATATTCAGTGTCAACATGAGTGGGTATTTCCAAGGGTACGCCCAAATGATTTCTTCAGTCGGTTTGAGAAGAGACCAAGTATGGAGTCAAGGAAATGGTGGTCGTAATCCTTGGGGTCGAAGCTTTGAAGTGAATTGGCTGCGATTGTATGATCTGCCTTTCCAAAGAACTCTTCACCTTAAGAATCCATGGAATCAATACAAACCAGTCAAAATTAGTAGAGATTGTCAG.....................................................................................................GAGTTACCTCCAGATATTGGTGAAGCTTTATGTGAGCTTCTTGATGGAAAGGATGCTTTGGATGTTGATTTGAAAAT...................................................................................................................................................GGATATCTTTGCAAGGAATGATTTCTCTTCTAAAAGGCCATATGTAGAGCCTTCACTGCATCTTGGAGATCAAGACTGTAATGCATCTCTGATACCTAATGGGACTATGTTTTATCCCTCTTTACTCTACCAACATCAAATTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691191" ref_strand="+" ref_description="SGN-E691191 [LH_Ea05H13]">
      <seq>cgtttattgctactctgctcctctttctctctcctttccaccgtaattattgtgattttaaaggaggttggaagcagatatgccatcagatactgcaagagaaaatgcatctatagctaattccattgagaccgactggaaaaatgaaagagtgaatcttggcggaccagatagttcaagcctcagagttaatgaggatacctatcgttctatagcagaggagctcacttcatctctgccaattggaatttcaagtgcaattgaaaagggtaaactctatagcataagatattttgtaatcaagagtttgaaccatgaaaatatccaattatcagtaaacagagggatttgggctactcaagccatgaatgaggccattttggatgaagcatttcataattccaacaaggttatactaatattcagtgtcaacatgagtgggtatttccaagggtacgcccaaatgatttcttcagtcggtttgagaagagaccaagtttggagtcaaggaaatggtggtcgtaatccttggggtcgaagctttgaagtgaattggctgcgattgtatgatctgcctttccaaagaactcttcaccttaagaatccatggaatcaatacaaaccagtcaaaattagtagagattgtcaggagttacctccagatattggtgaagctttatgtgagcttcttgatggaaaggatgcgttggatgttgatttgaaaatggatatctttgcaaggaatgatttctcttctaaaaggccatatgtagagccttcactgcatcttggagatcaagactgtaatgcatctctgacacctaatggggaccatgttttatccctctttactctaccaacatcaaattgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="9610" stop="14467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9909" g_stop="10018" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="170" r_length="110" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10019" i_stop="13099" i_length="3081">
            <donor d_prob="0.553" d_score="0.84"/>
            <acceptor a_prob="0.921" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13100" g_stop="13329" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="397" r_length="227" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13330" i_stop="13443" i_length="114">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.635" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13444" g_stop="13695" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="649" r_length="252" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13696" i_stop="13796" i_length="101">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13797" g_stop="13873" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="726" r_length="77" r_score="0.948"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13874" i_stop="14020" i_length="147">
            <donor d_prob="0.569" d_score="0.92"/>
            <acceptor a_prob="0.969" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14021" g_stop="14167" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="874" r_length="148" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E691191" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9909" e_stop="10018"/>
          <exon e_start="13100" e_stop="13329"/>
          <exon e_start="13444" e_stop="13695"/>
          <exon e_start="13797" e_stop="13873"/>
          <exon e_start="14021" e_stop="14167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAGGTTGTAAGCAGATATGCCATCAGATACTGCAAGAAAAAATGCAGCTATAGCTAATTCCATAGTGACCGACTACAAAAATGAAAGAAGGAATTTTGACGGACCAGGTAACTCTGATGCGAAATCTATTCAGAATTTAGCTATCTGTGTGGATTTTGTTTTGTTTGTATTTTTTTTTTTAGTAGTTTCTACTGAGATTTGTTACAAGGTTTCGTTGAATGTGTCTGCATGACAAAGACAAGGATGTGGTCATTTACACTGCCCACAATTTAATATTGGTGCAAAAGTTGTATGCTTCAAATAATCTTTTGGCTGGCTTTTCTATTCAACTGATGAGGAATGAGTATTCTTAAGCGTGTTAGGGATGGCAAAACAATTCCAGTCTTTTCTACTTTGACGGGAGCTTCACTTGAGAATTAGAAAGAGCTTGCTGAATTTGATAGAAAGGAGGTCCACTAGTTAGTAATTAGTGATGCCATGAAGAGTTCTAGTTACTTGCATGGTTTCTTGAGGCTGTAAGGTGGCTTGATATTATTAGGTCTTTCCACTAAACCACGAAAAAGTGAAACTAAGAGCCTGTTTGATTGGGCTTATAGCTTTTGACTTATAAGCCAAAATCCGTAAGTTAGGAGTTCTAACTTATGCTTTTGGCTTTTTTTTTTCCTATTTGGCTTAAGAAACTTAAAAACACTTTTTTATTTTACCCAAACACTACAAAAATGCTTAATAACACTTGAAATAAGTCAATCCGAACAGGCTCTAAATCTTTTCATAATTCAATTATGCGTGTTGTTCATTTGTATGAACAGTCATGGCTGTCTTTGAGATTGTGTAGAACAGTGTTGTGAAAAGCGCGCTTCAAAGCGAGGCGACCCATGTGCGCTTTTTTATCTTGAGGCGAGGCGATCTGAAAAAAGCTCTCGCTTCAGATGAAGAAGCGAGAAGCGACCCTAAGGCAAAAGCGCAATAAAGCGCGCTTTTTATAAAAAAAAGCGACAATTAGGGTTTTTTTTAAAAAAAAAAATTTAGGTTTTTTTTTTAAAAAATAATCTGAAATATAACCTTCTTTCTCCTCGCGACTCTTCTTTCACGACTCTTTGCCTTCTTTCTCTCCTCACGACTCTTCTTTCACAATACTTCTTTCCCTTCTTTCTCTCCTGACGATCTCGACTGAGGCTGCCTCTCTCTTCAACCTCCCGCGACTGCAGGTAACTTTTTGTTCATCTCTGTTTTAGCTAATGTTTATTAGTTCATCTCTATGAGTTCCTTTTCTCTTGAAATATTCAATCTTCGCCTGTGCTTCATCTCTTCATCTCTCTGAGTTTCGACTACTCTAGTTTTTTCTTCTCTTCTCTTCTTTTCTTCATCTCTGCTACCTGCGCTGTTTTTTTTTTTATTTTGTGATCAATCTAGCAGCCTTGTTGAAGAATAGGAGTTTGAATCTTTGTGATTTAATTATATTTTTTATTTTTTGCTTTATATGTTATGACTTATGAGTATTTTTGCCTATGTAATTTCTTTCAATCTAAGACTATATTACCTCTATTTAGTTGTTTAATATTTTTTTATTTTTATACTAAATGTCGCTTTTTTTAAAAAAGCGCGCGCTTCGCTTCACGCTTCTGTGAAGCAAGCCGTCGTCGCTTTTTTCCGCTTCTCGCTTACCAAAACACTGGTGTAGAAGTTTCACACCCTCCATGAATTTGTATGCACAAAAGCAGAGATGGTTTAGATGCACAACTTTTATTCCCTCGAATGAATGTGACACTTCAAGTATCTTTTGGTTGGAAATGCTATGAAGTTCATGGAGCAATTATATCATTTCAACACAATTTGTTGGAGAAACAAAGGGCAAAATCGAACTATAAATGTTACTTATTGATGAGAATAAACACTATGGTTTTTTCCTTTTCTTTTTGTGTTAAAACTCTGTTGTCAGCATCCTTTTCTAACATTCCATCAAGATTTTTGCCCTTGTCTCTAATTAGCCTAATAGTTCTTTTTTTCCACATAATGTCCCTCTTGAGATGCCTTAACTTCTTCATAAGGACATAATCTGGACTTCCAGTTACTTGATAATTTTGCCCCCGTTAATAAAATTACCTTATTCTATAAATAAATTAGTGACGATACAAGGAGTTCAGTTACTTGCATAGCTTATTGAGTATGTACAATCTGTCCTGGCCCCTGTCAGCTACAATCTGGCTTGGCATTAATTTGTTTACAATGTTGTAAAAAAGACATGCGATTGTTGAGAAAGTTGAACCTACAAATTTATGGAGTACTTTACTTATTAAGAATTGGAATCCAATTTCACGCCTTCATAATGAACCTGTGGTGTACATAAAGTTTAGAATCTAATGATAAAACTTTCAACCTGTTGTCTTATTGGATTTTAATATTGCAAATCCTCATAGATACCGTGTAGCATTTTTTGATGATCAGTGTTCAGGATCAGGAGCTAACTCCGTTTTTTTGAAATAGGTAACTTTGTATTATATCACAAAACAGTACATGGGTTGTACTGAAATCATTATATACAATTGTCTCCTTTTCCGCTTGTTTCAGTCTTTATTGAGCCTAAAACAACAATTGCCAATACAATGTCATTAGAGTATACCTGATTACACCAAAAACATAACAATAAAATGCTGTTTAACTTGACTTTCTGGACATAACAATAAATTGTAGTTTAACTTGACTTTTGTAATTATTACGTAGAAAATTCGCAGAAATAGGCTGTGTGCTCATTCATTTTCTTCTGAAAAATGTTTTGAGTTGTTGGAACTTGATGATTGAGTTTCTATGAACAAACAGTTCGAGTTAATTCCTATGCTTGCTATATTGTTTTGGTTGTGAATAATGCTTATTTTTCTTTACTGTGAGTTGTTTAGTATTTTCTGGGCTGTTATATATGCGAATCATCATAGATATCGTGTAGCATCCTTGACGATCAGTGTTCAGGAGCAAACTCCATTTTGTATAATTTCTTGTTAAATTCAACATCTCTCGACTGTAACCTTTATGAAGTTTCACGCTACCTGATCACAGGAATAAAAATTAAATAGAAGATATCTTGTAGCTTCGTTGTCCTTGACATGAATGTAGTGGTTAAATGATAAGTATATGAACTACTATATGCTGGTACATCAAAATGATTCAAATTTGAATATGGACTCTTCTCTCAGATAGTTCATGCCTCAGAGTAAATGAGGATACCAATCGTTCTATAGCAGAGGAGCTCACACTTTCATCTCCGCCGATTGGAATTTCAACTGCAATTGAAAAGGGTAAACTCTATAGCATAAGATATTTTGTAATCAAGAGTTTGAACCATGAAAATATCCAATTATCAGTAAACAGAGGGATTTGGGCTACTCAAGCCATGAATGAGGCCATTTTGGATGAAGCATTTCATGTAAGTCGATTTTCCTTTTATATCCCATGATTATTATAATATAATGCCCATCTGTAATATATATATGCATATAATCTTAAATACAACAAATGATTGTGTTTATTTTGGGAGCAGAATTCCAGCAAGGTTATACTAATATTCAGTGTCAACACTAGTGGGTATTTCCAAGGGTATGCCCAAATGATTTCTTCTGTCGGTTTGAGAAGAGACCAAGTTTGGAGTCAAGGAAATGGTGGTCGTAATTCTTGGGGTCGAAGCTTTGAAGTGAATTGGCTGCGATTGTATGATCTGCCTTTTCAAAGAACTCTTCACCTTAAGAATCCATGGAATCAAAACAAACCAGTCAAAATTAGTAGAGATTGTCAGGCATGGGTTATATTCTTGTCTTAGTACTATTCACTTAATTTTTCAATGTACTCTTGTTAGTAGAGAGGCTTTTATGACCCTGGTACATGTATTGCTAACAGGAGTTACCTCCAGATATTGGTGAAGCTTTATGTGAGCTCCTTGATGGACAGGATGCTTTGGATGTTAATTTGAAAATGTATAGCTCTTTCCTTGAAAACTTAAATAGTGCCCGTTCCATTATTTGGAAACATACAGCCTTTTTTCAAAATTGAATTAGTGCTAGAGTTGTGGAAAAATTGGTCCAAATGATTTTTCTCTTTACAATTGTTATTGGCTCATCCAGGGATGTCTTTGCAAGGAATGAGCTCTCTTCTAAAAGGCCATATGTAGAGCCTTCACTGCATCTTGGAGATCAAGACTATAATGCATCTCTGATACCTAAT-GGGACCATGTTTTCACCCTCTTTACTCTACCAACATCAAATTGATGC</genome_strand>
        <mrna_strand>AAGGAGGTTGGAAGCAGATATGCCATCAGATACTGCAAGAGAAAATGCATCTATAGCTAATTCCATTGAGACCGACTGGAAAAATGAAAGAGTGAATCTTGGCGGACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTCAAGCCTCAGAGTTAATGAGGATACCTATCGTTCTATAGCAGAGGAGCT--CAC-TTCATCTCTGCCAATTGGAATTTCAAGTGCAATTGAAAAGGGTAAACTCTATAGCATAAGATATTTTGTAATCAAGAGTTTGAACCATGAAAATATCCAATTATCAGTAAACAGAGGGATTTGGGCTACTCAAGCCATGAATGAGGCCATTTTGGATGAAGCATTTCAT..................................................................................................................AATTCCAACAAGGTTATACTAATATTCAGTGTCAACATGAGTGGGTATTTCCAAGGGTACGCCCAAATGATTTCTTCAGTCGGTTTGAGAAGAGACCAAGTTTGGAGTCAAGGAAATGGTGGTCGTAATCCTTGGGGTCGAAGCTTTGAAGTGAATTGGCTGCGATTGTATGATCTGCCTTTCCAAAGAACTCTTCACCTTAAGAATCCATGGAATCAATACAAACCAGTCAAAATTAGTAGAGATTGTCAG.....................................................................................................GAGTTACCTCCAGATATTGGTGAAGCTTTATGTGAGCTTCTTGATGGAAAGGATGCGTTGGATGTTGATTTGAAAAT...................................................................................................................................................GGATATCTTTGCAAGGAATGATTTCTCTTCTAAAAGGCCATATGTAGAGCCTTCACTGCATCTTGGAGATCAAGACTGTAATGCATCTCTGACACCTAATGGGGACCATGTTTTATCCCTCTTTACTCTACCAACATCAAATTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348546" ref_strand="+" ref_description="SGN-E348546 [cTOF-30-F24]">
      <seq>ctttccaccggaattattgtgattttaaaggaggttgtaagcagatatgccatcagatactgcaagagaaaatgcatctatagctaattccattgagaccgactggaaaaatgaaagagggaatcttggcggaccagatagttcaagcctcagagttaatgaggacacgaatcgttctatagcagaggagctcacttcatctctgccaattggaatttcaagtgcaattgaaaagggtaaactctatagcataagatattttgtaatcaagagtttgaaccatgaaaatatccaattatcagtaaacagagggatttgggctactcaagccatgaatgaggccattttggatgaagcatttcataattccagcaaggttatactaatattcagtgtcaacatgagtgggtatttccaagggtacgcccaaatgatttcttcagtcggtttgagaagagaccaagtatggagtcaaggaaatggtggtcgtaatccttggggtcgaagctttgaagtgaattggctgcgattgtatgatctgcctttccaaagaactcttcaccttaagaatccatggaatcaatacaaaccagtcaaaattagtagagattgtcaggagttacctccagatattggtgaagctttatgtgagcttcttgatggaaaggatgctttggatgttgatttgaaaatggatatctttgcaaggaatgatttctcttctaaaggccatatgtagagccttcactgcatcttggagatcaagactgtaatgcatctctgatacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="9610" stop="14417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9909" g_stop="10018" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="137" r_length="110" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10019" i_stop="13099" i_length="3081">
            <donor d_prob="0.553" d_score="0.86"/>
            <acceptor a_prob="0.921" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13100" g_stop="13329" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="364" r_length="227" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13330" i_stop="13443" i_length="114">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.635" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13444" g_stop="13695" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="616" r_length="252" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13696" i_stop="13796" i_length="101">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13797" g_stop="13873" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="693" r_length="77" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13874" i_stop="14020" i_length="147">
            <donor d_prob="0.569" d_score="0.94"/>
            <acceptor a_prob="0.969" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14021" g_stop="14117" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="789" r_length="96" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E348546" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9909" e_stop="10018"/>
          <exon e_start="13100" e_stop="13329"/>
          <exon e_start="13444" e_stop="13695"/>
          <exon e_start="13797" e_stop="13873"/>
          <exon e_start="14021" e_stop="14117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAGGTTGTAAGCAGATATGCCATCAGATACTGCAAGAAAAAATGCAGCTATAGCTAATTCCATAGTGACCGACTACAAAAATGAAAGAAGGAATTTTGACGGACCAGGTAACTCTGATGCGAAATCTATTCAGAATTTAGCTATCTGTGTGGATTTTGTTTTGTTTGTATTTTTTTTTTTAGTAGTTTCTACTGAGATTTGTTACAAGGTTTCGTTGAATGTGTCTGCATGACAAAGACAAGGATGTGGTCATTTACACTGCCCACAATTTAATATTGGTGCAAAAGTTGTATGCTTCAAATAATCTTTTGGCTGGCTTTTCTATTCAACTGATGAGGAATGAGTATTCTTAAGCGTGTTAGGGATGGCAAAACAATTCCAGTCTTTTCTACTTTGACGGGAGCTTCACTTGAGAATTAGAAAGAGCTTGCTGAATTTGATAGAAAGGAGGTCCACTAGTTAGTAATTAGTGATGCCATGAAGAGTTCTAGTTACTTGCATGGTTTCTTGAGGCTGTAAGGTGGCTTGATATTATTAGGTCTTTCCACTAAACCACGAAAAAGTGAAACTAAGAGCCTGTTTGATTGGGCTTATAGCTTTTGACTTATAAGCCAAAATCCGTAAGTTAGGAGTTCTAACTTATGCTTTTGGCTTTTTTTTTTCCTATTTGGCTTAAGAAACTTAAAAACACTTTTTTATTTTACCCAAACACTACAAAAATGCTTAATAACACTTGAAATAAGTCAATCCGAACAGGCTCTAAATCTTTTCATAATTCAATTATGCGTGTTGTTCATTTGTATGAACAGTCATGGCTGTCTTTGAGATTGTGTAGAACAGTGTTGTGAAAAGCGCGCTTCAAAGCGAGGCGACCCATGTGCGCTTTTTTATCTTGAGGCGAGGCGATCTGAAAAAAGCTCTCGCTTCAGATGAAGAAGCGAGAAGCGACCCTAAGGCAAAAGCGCAATAAAGCGCGCTTTTTATAAAAAAAAGCGACAATTAGGGTTTTTTTTAAAAAAAAAAATTTAGGTTTTTTTTTTAAAAAATAATCTGAAATATAACCTTCTTTCTCCTCGCGACTCTTCTTTCACGACTCTTTGCCTTCTTTCTCTCCTCACGACTCTTCTTTCACAATACTTCTTTCCCTTCTTTCTCTCCTGACGATCTCGACTGAGGCTGCCTCTCTCTTCAACCTCCCGCGACTGCAGGTAACTTTTTGTTCATCTCTGTTTTAGCTAATGTTTATTAGTTCATCTCTATGAGTTCCTTTTCTCTTGAAATATTCAATCTTCGCCTGTGCTTCATCTCTTCATCTCTCTGAGTTTCGACTACTCTAGTTTTTTCTTCTCTTCTCTTCTTTTCTTCATCTCTGCTACCTGCGCTGTTTTTTTTTTTATTTTGTGATCAATCTAGCAGCCTTGTTGAAGAATAGGAGTTTGAATCTTTGTGATTTAATTATATTTTTTATTTTTTGCTTTATATGTTATGACTTATGAGTATTTTTGCCTATGTAATTTCTTTCAATCTAAGACTATATTACCTCTATTTAGTTGTTTAATATTTTTTTATTTTTATACTAAATGTCGCTTTTTTTAAAAAAGCGCGCGCTTCGCTTCACGCTTCTGTGAAGCAAGCCGTCGTCGCTTTTTTCCGCTTCTCGCTTACCAAAACACTGGTGTAGAAGTTTCACACCCTCCATGAATTTGTATGCACAAAAGCAGAGATGGTTTAGATGCACAACTTTTATTCCCTCGAATGAATGTGACACTTCAAGTATCTTTTGGTTGGAAATGCTATGAAGTTCATGGAGCAATTATATCATTTCAACACAATTTGTTGGAGAAACAAAGGGCAAAATCGAACTATAAATGTTACTTATTGATGAGAATAAACACTATGGTTTTTTCCTTTTCTTTTTGTGTTAAAACTCTGTTGTCAGCATCCTTTTCTAACATTCCATCAAGATTTTTGCCCTTGTCTCTAATTAGCCTAATAGTTCTTTTTTTCCACATAATGTCCCTCTTGAGATGCCTTAACTTCTTCATAAGGACATAATCTGGACTTCCAGTTACTTGATAATTTTGCCCCCGTTAATAAAATTACCTTATTCTATAAATAAATTAGTGACGATACAAGGAGTTCAGTTACTTGCATAGCTTATTGAGTATGTACAATCTGTCCTGGCCCCTGTCAGCTACAATCTGGCTTGGCATTAATTTGTTTACAATGTTGTAAAAAAGACATGCGATTGTTGAGAAAGTTGAACCTACAAATTTATGGAGTACTTTACTTATTAAGAATTGGAATCCAATTTCACGCCTTCATAATGAACCTGTGGTGTACATAAAGTTTAGAATCTAATGATAAAACTTTCAACCTGTTGTCTTATTGGATTTTAATATTGCAAATCCTCATAGATACCGTGTAGCATTTTTTGATGATCAGTGTTCAGGATCAGGAGCTAACTCCGTTTTTTTGAAATAGGTAACTTTGTATTATATCACAAAACAGTACATGGGTTGTACTGAAATCATTATATACAATTGTCTCCTTTTCCGCTTGTTTCAGTCTTTATTGAGCCTAAAACAACAATTGCCAATACAATGTCATTAGAGTATACCTGATTACACCAAAAACATAACAATAAAATGCTGTTTAACTTGACTTTCTGGACATAACAATAAATTGTAGTTTAACTTGACTTTTGTAATTATTACGTAGAAAATTCGCAGAAATAGGCTGTGTGCTCATTCATTTTCTTCTGAAAAATGTTTTGAGTTGTTGGAACTTGATGATTGAGTTTCTATGAACAAACAGTTCGAGTTAATTCCTATGCTTGCTATATTGTTTTGGTTGTGAATAATGCTTATTTTTCTTTACTGTGAGTTGTTTAGTATTTTCTGGGCTGTTATATATGCGAATCATCATAGATATCGTGTAGCATCCTTGACGATCAGTGTTCAGGAGCAAACTCCATTTTGTATAATTTCTTGTTAAATTCAACATCTCTCGACTGTAACCTTTATGAAGTTTCACGCTACCTGATCACAGGAATAAAAATTAAATAGAAGATATCTTGTAGCTTCGTTGTCCTTGACATGAATGTAGTGGTTAAATGATAAGTATATGAACTACTATATGCTGGTACATCAAAATGATTCAAATTTGAATATGGACTCTTCTCTCAGATAGTTCATGCCTCAGAGTAAATGAGGATACCAATCGTTCTATAGCAGAGGAGCTCACACTTTCATCTCCGCCGATTGGAATTTCAACTGCAATTGAAAAGGGTAAACTCTATAGCATAAGATATTTTGTAATCAAGAGTTTGAACCATGAAAATATCCAATTATCAGTAAACAGAGGGATTTGGGCTACTCAAGCCATGAATGAGGCCATTTTGGATGAAGCATTTCATGTAAGTCGATTTTCCTTTTATATCCCATGATTATTATAATATAATGCCCATCTGTAATATATATATGCATATAATCTTAAATACAACAAATGATTGTGTTTATTTTGGGAGCAGAATTCCAGCAAGGTTATACTAATATTCAGTGTCAACACTAGTGGGTATTTCCAAGGGTATGCCCAAATGATTTCTTCTGTCGGTTTGAGAAGAGACCAAGTTTGGAGTCAAGGAAATGGTGGTCGTAATTCTTGGGGTCGAAGCTTTGAAGTGAATTGGCTGCGATTGTATGATCTGCCTTTTCAAAGAACTCTTCACCTTAAGAATCCATGGAATCAAAACAAACCAGTCAAAATTAGTAGAGATTGTCAGGCATGGGTTATATTCTTGTCTTAGTACTATTCACTTAATTTTTCAATGTACTCTTGTTAGTAGAGAGGCTTTTATGACCCTGGTACATGTATTGCTAACAGGAGTTACCTCCAGATATTGGTGAAGCTTTATGTGAGCTCCTTGATGGACAGGATGCTTTGGATGTTAATTTGAAAATGTATAGCTCTTTCCTTGAAAACTTAAATAGTGCCCGTTCCATTATTTGGAAACATACAGCCTTTTTTCAAAATTGAATTAGTGCTAGAGTTGTGGAAAAATTGGTCCAAATGATTTTTCTCTTTACAATTGTTATTGGCTCATCCAGGGATGTCTTTGCAAGGAATGAGCTCTCTTCTAAAAGGCCATATGTAGAGCCTTCACTGCATCTTGGAGATCAAGACTATAATGCATCTCTGATACCT</genome_strand>
        <mrna_strand>AAGGAGGTTGTAAGCAGATATGCCATCAGATACTGCAAGAGAAAATGCATCTATAGCTAATTCCATTGAGACCGACTGGAAAAATGAAAGAGGGAATCTTGGCGGACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTCAAGCCTCAGAGTTAATGAGGACACGAATCGTTCTATAGCAGAGGAGCT--CAC-TTCATCTCTGCCAATTGGAATTTCAAGTGCAATTGAAAAGGGTAAACTCTATAGCATAAGATATTTTGTAATCAAGAGTTTGAACCATGAAAATATCCAATTATCAGTAAACAGAGGGATTTGGGCTACTCAAGCCATGAATGAGGCCATTTTGGATGAAGCATTTCAT..................................................................................................................AATTCCAGCAAGGTTATACTAATATTCAGTGTCAACATGAGTGGGTATTTCCAAGGGTACGCCCAAATGATTTCTTCAGTCGGTTTGAGAAGAGACCAAGTATGGAGTCAAGGAAATGGTGGTCGTAATCCTTGGGGTCGAAGCTTTGAAGTGAATTGGCTGCGATTGTATGATCTGCCTTTCCAAAGAACTCTTCACCTTAAGAATCCATGGAATCAATACAAACCAGTCAAAATTAGTAGAGATTGTCAG.....................................................................................................GAGTTACCTCCAGATATTGGTGAAGCTTTATGTGAGCTTCTTGATGGAAAGGATGCTTTGGATGTTGATTTGAAAAT...................................................................................................................................................GGATATCTTTGCAAGGAATGATTTCTCTTCT-AAAGGCCATATGTAGAGCCTTCACTGCATCTTGGAGATCAAGACTGTAATGCATCTCTGATACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332940" ref_strand="+" ref_description="SGN-E332940 [cTOD-19-D5]">
      <seq>tggtaaactgttttgctactctgctcctctttctctctcctttccaccggaattattgtgattttaaaggaggttgtaagcagatatgccatcagatactgcaagagaaaatgcatctatagctaattccattgagaccgactggaaaaatgaaagagggaatcttggcggaccagatagttcaagcctcagagttaatgaggacacgaatcgttctatagcagaggagctcacttcatctctgccaattggaatttcaagtgcaattgaaaagggtaaactctatagcataagatattttgtaatcaagagtttgaaccatgaaaatatccaattatcagtaaacagagggatttgggctactcaagccatgaatgaggccattttggatgaagcatttcataattccagcaaggttatactaatattcagtgtcaacatgagtgggtatttccaagggtacgcccaaatgatttcttcagtcggtttgagaagaaacaagtatggagtcaaggaaatggtggtcgtaatccttggggtcgaagcttttgagtgaattggctgcgattgtatgatctgcctttccaaagaactcttcnacttnagaaatcatggaatcaatacnaaccagtcaaaattagtagagattgtcaggagttacctccagatattggtgaagctttatgtgagcttcttgatggaaagatgctttggatgttgatttgaaaatgatatctttgcaaggatgatttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="9610" stop="14186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9909" g_stop="10018" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="176" r_length="110" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10019" i_stop="13099" i_length="3081">
            <donor d_prob="0.553" d_score="0.86"/>
            <acceptor a_prob="0.921" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13100" g_stop="13329" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="403" r_length="227" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13330" i_stop="13443" i_length="114">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.635" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13444" g_stop="13695" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="654" r_length="251" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13696" i_stop="13796" i_length="101">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13797" g_stop="13873" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="730" r_length="76" r_score="0.948"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13874" i_stop="14020" i_length="147">
            <donor d_prob="0.569" d_score="0.92"/>
            <acceptor a_prob="0.969" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14021" g_stop="14048" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="756" r_length="26" r_score="0.821"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E332940" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9909" e_stop="10018"/>
          <exon e_start="13100" e_stop="13329"/>
          <exon e_start="13444" e_stop="13695"/>
          <exon e_start="13797" e_stop="13873"/>
          <exon e_start="14021" e_stop="14048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAGGTTGTAAGCAGATATGCCATCAGATACTGCAAGAAAAAATGCAGCTATAGCTAATTCCATAGTGACCGACTACAAAAATGAAAGAAGGAATTTTGACGGACCAGGTAACTCTGATGCGAAATCTATTCAGAATTTAGCTATCTGTGTGGATTTTGTTTTGTTTGTATTTTTTTTTTTAGTAGTTTCTACTGAGATTTGTTACAAGGTTTCGTTGAATGTGTCTGCATGACAAAGACAAGGATGTGGTCATTTACACTGCCCACAATTTAATATTGGTGCAAAAGTTGTATGCTTCAAATAATCTTTTGGCTGGCTTTTCTATTCAACTGATGAGGAATGAGTATTCTTAAGCGTGTTAGGGATGGCAAAACAATTCCAGTCTTTTCTACTTTGACGGGAGCTTCACTTGAGAATTAGAAAGAGCTTGCTGAATTTGATAGAAAGGAGGTCCACTAGTTAGTAATTAGTGATGCCATGAAGAGTTCTAGTTACTTGCATGGTTTCTTGAGGCTGTAAGGTGGCTTGATATTATTAGGTCTTTCCACTAAACCACGAAAAAGTGAAACTAAGAGCCTGTTTGATTGGGCTTATAGCTTTTGACTTATAAGCCAAAATCCGTAAGTTAGGAGTTCTAACTTATGCTTTTGGCTTTTTTTTTTCCTATTTGGCTTAAGAAACTTAAAAACACTTTTTTATTTTACCCAAACACTACAAAAATGCTTAATAACACTTGAAATAAGTCAATCCGAACAGGCTCTAAATCTTTTCATAATTCAATTATGCGTGTTGTTCATTTGTATGAACAGTCATGGCTGTCTTTGAGATTGTGTAGAACAGTGTTGTGAAAAGCGCGCTTCAAAGCGAGGCGACCCATGTGCGCTTTTTTATCTTGAGGCGAGGCGATCTGAAAAAAGCTCTCGCTTCAGATGAAGAAGCGAGAAGCGACCCTAAGGCAAAAGCGCAATAAAGCGCGCTTTTTATAAAAAAAAGCGACAATTAGGGTTTTTTTTAAAAAAAAAAATTTAGGTTTTTTTTTTAAAAAATAATCTGAAATATAACCTTCTTTCTCCTCGCGACTCTTCTTTCACGACTCTTTGCCTTCTTTCTCTCCTCACGACTCTTCTTTCACAATACTTCTTTCCCTTCTTTCTCTCCTGACGATCTCGACTGAGGCTGCCTCTCTCTTCAACCTCCCGCGACTGCAGGTAACTTTTTGTTCATCTCTGTTTTAGCTAATGTTTATTAGTTCATCTCTATGAGTTCCTTTTCTCTTGAAATATTCAATCTTCGCCTGTGCTTCATCTCTTCATCTCTCTGAGTTTCGACTACTCTAGTTTTTTCTTCTCTTCTCTTCTTTTCTTCATCTCTGCTACCTGCGCTGTTTTTTTTTTTATTTTGTGATCAATCTAGCAGCCTTGTTGAAGAATAGGAGTTTGAATCTTTGTGATTTAATTATATTTTTTATTTTTTGCTTTATATGTTATGACTTATGAGTATTTTTGCCTATGTAATTTCTTTCAATCTAAGACTATATTACCTCTATTTAGTTGTTTAATATTTTTTTATTTTTATACTAAATGTCGCTTTTTTTAAAAAAGCGCGCGCTTCGCTTCACGCTTCTGTGAAGCAAGCCGTCGTCGCTTTTTTCCGCTTCTCGCTTACCAAAACACTGGTGTAGAAGTTTCACACCCTCCATGAATTTGTATGCACAAAAGCAGAGATGGTTTAGATGCACAACTTTTATTCCCTCGAATGAATGTGACACTTCAAGTATCTTTTGGTTGGAAATGCTATGAAGTTCATGGAGCAATTATATCATTTCAACACAATTTGTTGGAGAAACAAAGGGCAAAATCGAACTATAAATGTTACTTATTGATGAGAATAAACACTATGGTTTTTTCCTTTTCTTTTTGTGTTAAAACTCTGTTGTCAGCATCCTTTTCTAACATTCCATCAAGATTTTTGCCCTTGTCTCTAATTAGCCTAATAGTTCTTTTTTTCCACATAATGTCCCTCTTGAGATGCCTTAACTTCTTCATAAGGACATAATCTGGACTTCCAGTTACTTGATAATTTTGCCCCCGTTAATAAAATTACCTTATTCTATAAATAAATTAGTGACGATACAAGGAGTTCAGTTACTTGCATAGCTTATTGAGTATGTACAATCTGTCCTGGCCCCTGTCAGCTACAATCTGGCTTGGCATTAATTTGTTTACAATGTTGTAAAAAAGACATGCGATTGTTGAGAAAGTTGAACCTACAAATTTATGGAGTACTTTACTTATTAAGAATTGGAATCCAATTTCACGCCTTCATAATGAACCTGTGGTGTACATAAAGTTTAGAATCTAATGATAAAACTTTCAACCTGTTGTCTTATTGGATTTTAATATTGCAAATCCTCATAGATACCGTGTAGCATTTTTTGATGATCAGTGTTCAGGATCAGGAGCTAACTCCGTTTTTTTGAAATAGGTAACTTTGTATTATATCACAAAACAGTACATGGGTTGTACTGAAATCATTATATACAATTGTCTCCTTTTCCGCTTGTTTCAGTCTTTATTGAGCCTAAAACAACAATTGCCAATACAATGTCATTAGAGTATACCTGATTACACCAAAAACATAACAATAAAATGCTGTTTAACTTGACTTTCTGGACATAACAATAAATTGTAGTTTAACTTGACTTTTGTAATTATTACGTAGAAAATTCGCAGAAATAGGCTGTGTGCTCATTCATTTTCTTCTGAAAAATGTTTTGAGTTGTTGGAACTTGATGATTGAGTTTCTATGAACAAACAGTTCGAGTTAATTCCTATGCTTGCTATATTGTTTTGGTTGTGAATAATGCTTATTTTTCTTTACTGTGAGTTGTTTAGTATTTTCTGGGCTGTTATATATGCGAATCATCATAGATATCGTGTAGCATCCTTGACGATCAGTGTTCAGGAGCAAACTCCATTTTGTATAATTTCTTGTTAAATTCAACATCTCTCGACTGTAACCTTTATGAAGTTTCACGCTACCTGATCACAGGAATAAAAATTAAATAGAAGATATCTTGTAGCTTCGTTGTCCTTGACATGAATGTAGTGGTTAAATGATAAGTATATGAACTACTATATGCTGGTACATCAAAATGATTCAAATTTGAATATGGACTCTTCTCTCAGATAGTTCATGCCTCAGAGTAAATGAGGATACCAATCGTTCTATAGCAGAGGAGCTCACACTTTCATCTCCGCCGATTGGAATTTCAACTGCAATTGAAAAGGGTAAACTCTATAGCATAAGATATTTTGTAATCAAGAGTTTGAACCATGAAAATATCCAATTATCAGTAAACAGAGGGATTTGGGCTACTCAAGCCATGAATGAGGCCATTTTGGATGAAGCATTTCATGTAAGTCGATTTTCCTTTTATATCCCATGATTATTATAATATAATGCCCATCTGTAATATATATATGCATATAATCTTAAATACAACAAATGATTGTGTTTATTTTGGGAGCAGAATTCCAGCAAGGTTATACTAATATTCAGTGTCAACACTAGTGGGTATTTCCAAGGGTATGCCCAAATGATTTCTTCTGTCGGTTTGAGAAGAGACCAAGTTTGGAGTCAAGGAAATGGTGGTCGTAATTCTTGGGGTCGAAGCTTTGAAGTGAATTGGCTGCGATTGTATGATCTGCCTTTTCAAAGAACTCTTCACCTTAAGAATCCATGGAATCAAAACAAACCAGTCAAAATTAGTAGAGATTGTCAGGCATGGGTTATATTCTTGTCTTAGTACTATTCACTTAATTTTTCAATGTACTCTTGTTAGTAGAGAGGCTTTTATGACCCTGGTACATGTATTGCTAACAGGAGTTACCTCCAGATATTGGTGAAGCTTTATGTGAGCTCCTTGATGGACAGGATGCTTTGGATGTTAATTTGAAAATGTATAGCTCTTTCCTTGAAAACTTAAATAGTGCCCGTTCCATTATTTGGAAACATACAGCCTTTTTTCAAAATTGAATTAGTGCTAGAGTTGTGGAAAAATTGGTCCAAATGATTTTTCTCTTTACAATTGTTATTGGCTCATCCAGGGATGTCTTTGCAAGGAATGAGCTCTCT</genome_strand>
        <mrna_strand>AAGGAGGTTGTAAGCAGATATGCCATCAGATACTGCAAGAGAAAATGCATCTATAGCTAATTCCATTGAGACCGACTGGAAAAATGAAAGAGGGAATCTTGGCGGACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTCAAGCCTCAGAGTTAATGAGGACACGAATCGTTCTATAGCAGAGGAGCT--CAC-TTCATCTCTGCCAATTGGAATTTCAAGTGCAATTGAAAAGGGTAAACTCTATAGCATAAGATATTTTGTAATCAAGAGTTTGAACCATGAAAATATCCAATTATCAGTAAACAGAGGGATTTGGGCTACTCAAGCCATGAATGAGGCCATTTTGGATGAAGCATTTCAT..................................................................................................................AATTCCAGCAAGGTTATACTAATATTCAGTGTCAACATGAGTGGGTATTTCCAAGGGTACGCCCAAATGATTTCTTCAGTCGGTTTGAGAAGA-AACAAGTATGGAGTCAAGGAAATGGTGGTCGTAATCCTTGGGGTCGAAGCTTTTGAGTGAATTGGCTGCGATTGTATGATCTGCCTTTCCAAAGAACTCTTCNACTTNAGAAATCATGGAATCAATACNAACCAGTCAAAATTAGTAGAGATTGTCAG.....................................................................................................GAGTTACCTCCAGATATTGGTGAAGCTTTATGTGAGCTTCTTGATGGA-AAGATGCTTTGGATGTTGATTTGAAAAT...................................................................................................................................................-GATATCTTTGCAAGG-ATGATTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333134" ref_strand="+" ref_description="SGN-E333134 [cTOD-19-B2]">
      <seq>tctcctttccaccggaattattgtgattttaaaggaggttgtaagcagatatgccatcagatactgcaagagaaaatgcatctatagctaattccattgagaccgactggaaaaatgaaagagggaatcttggcggaccagatagttcaagcctcagagttaatgaggacacgaatcgttctatagcagaggagctcacttcatctctgccaattggaatttcaagtgcaattgaaaagggtaaactctatagcataagatattttgtaatcaagagtttgaaccatgaaaatatccaattatcagtaaacagagggatttgggctactcaagccatgaatgaggccattttggatgaagcatttcataattccagcaaggttatactaatattcagtgtcaacatgagtgggtatttccaagggtacgcccaaatgatttcttcagtcggtttgagaaaaaccaagtatggagtcaaggaaatggtggtcgtaatccttggggtcgaagctttgaagtgaattggctgcgattgtatgatctgcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="9610" stop="13924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9909" g_stop="10018" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="141" r_length="110" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10019" i_stop="13099" i_length="3081">
            <donor d_prob="0.553" d_score="0.86"/>
            <acceptor a_prob="0.921" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13100" g_stop="13329" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="368" r_length="227" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13330" i_stop="13443" i_length="114">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.635" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13444" g_stop="13624" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="548" r_length="180" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E333134" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9909" e_stop="10018"/>
          <exon e_start="13100" e_stop="13329"/>
          <exon e_start="13444" e_stop="13624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAGGTTGTAAGCAGATATGCCATCAGATACTGCAAGAAAAAATGCAGCTATAGCTAATTCCATAGTGACCGACTACAAAAATGAAAGAAGGAATTTTGACGGACCAGGTAACTCTGATGCGAAATCTATTCAGAATTTAGCTATCTGTGTGGATTTTGTTTTGTTTGTATTTTTTTTTTTAGTAGTTTCTACTGAGATTTGTTACAAGGTTTCGTTGAATGTGTCTGCATGACAAAGACAAGGATGTGGTCATTTACACTGCCCACAATTTAATATTGGTGCAAAAGTTGTATGCTTCAAATAATCTTTTGGCTGGCTTTTCTATTCAACTGATGAGGAATGAGTATTCTTAAGCGTGTTAGGGATGGCAAAACAATTCCAGTCTTTTCTACTTTGACGGGAGCTTCACTTGAGAATTAGAAAGAGCTTGCTGAATTTGATAGAAAGGAGGTCCACTAGTTAGTAATTAGTGATGCCATGAAGAGTTCTAGTTACTTGCATGGTTTCTTGAGGCTGTAAGGTGGCTTGATATTATTAGGTCTTTCCACTAAACCACGAAAAAGTGAAACTAAGAGCCTGTTTGATTGGGCTTATAGCTTTTGACTTATAAGCCAAAATCCGTAAGTTAGGAGTTCTAACTTATGCTTTTGGCTTTTTTTTTTCCTATTTGGCTTAAGAAACTTAAAAACACTTTTTTATTTTACCCAAACACTACAAAAATGCTTAATAACACTTGAAATAAGTCAATCCGAACAGGCTCTAAATCTTTTCATAATTCAATTATGCGTGTTGTTCATTTGTATGAACAGTCATGGCTGTCTTTGAGATTGTGTAGAACAGTGTTGTGAAAAGCGCGCTTCAAAGCGAGGCGACCCATGTGCGCTTTTTTATCTTGAGGCGAGGCGATCTGAAAAAAGCTCTCGCTTCAGATGAAGAAGCGAGAAGCGACCCTAAGGCAAAAGCGCAATAAAGCGCGCTTTTTATAAAAAAAAGCGACAATTAGGGTTTTTTTTAAAAAAAAAAATTTAGGTTTTTTTTTTAAAAAATAATCTGAAATATAACCTTCTTTCTCCTCGCGACTCTTCTTTCACGACTCTTTGCCTTCTTTCTCTCCTCACGACTCTTCTTTCACAATACTTCTTTCCCTTCTTTCTCTCCTGACGATCTCGACTGAGGCTGCCTCTCTCTTCAACCTCCCGCGACTGCAGGTAACTTTTTGTTCATCTCTGTTTTAGCTAATGTTTATTAGTTCATCTCTATGAGTTCCTTTTCTCTTGAAATATTCAATCTTCGCCTGTGCTTCATCTCTTCATCTCTCTGAGTTTCGACTACTCTAGTTTTTTCTTCTCTTCTCTTCTTTTCTTCATCTCTGCTACCTGCGCTGTTTTTTTTTTTATTTTGTGATCAATCTAGCAGCCTTGTTGAAGAATAGGAGTTTGAATCTTTGTGATTTAATTATATTTTTTATTTTTTGCTTTATATGTTATGACTTATGAGTATTTTTGCCTATGTAATTTCTTTCAATCTAAGACTATATTACCTCTATTTAGTTGTTTAATATTTTTTTATTTTTATACTAAATGTCGCTTTTTTTAAAAAAGCGCGCGCTTCGCTTCACGCTTCTGTGAAGCAAGCCGTCGTCGCTTTTTTCCGCTTCTCGCTTACCAAAACACTGGTGTAGAAGTTTCACACCCTCCATGAATTTGTATGCACAAAAGCAGAGATGGTTTAGATGCACAACTTTTATTCCCTCGAATGAATGTGACACTTCAAGTATCTTTTGGTTGGAAATGCTATGAAGTTCATGGAGCAATTATATCATTTCAACACAATTTGTTGGAGAAACAAAGGGCAAAATCGAACTATAAATGTTACTTATTGATGAGAATAAACACTATGGTTTTTTCCTTTTCTTTTTGTGTTAAAACTCTGTTGTCAGCATCCTTTTCTAACATTCCATCAAGATTTTTGCCCTTGTCTCTAATTAGCCTAATAGTTCTTTTTTTCCACATAATGTCCCTCTTGAGATGCCTTAACTTCTTCATAAGGACATAATCTGGACTTCCAGTTACTTGATAATTTTGCCCCCGTTAATAAAATTACCTTATTCTATAAATAAATTAGTGACGATACAAGGAGTTCAGTTACTTGCATAGCTTATTGAGTATGTACAATCTGTCCTGGCCCCTGTCAGCTACAATCTGGCTTGGCATTAATTTGTTTACAATGTTGTAAAAAAGACATGCGATTGTTGAGAAAGTTGAACCTACAAATTTATGGAGTACTTTACTTATTAAGAATTGGAATCCAATTTCACGCCTTCATAATGAACCTGTGGTGTACATAAAGTTTAGAATCTAATGATAAAACTTTCAACCTGTTGTCTTATTGGATTTTAATATTGCAAATCCTCATAGATACCGTGTAGCATTTTTTGATGATCAGTGTTCAGGATCAGGAGCTAACTCCGTTTTTTTGAAATAGGTAACTTTGTATTATATCACAAAACAGTACATGGGTTGTACTGAAATCATTATATACAATTGTCTCCTTTTCCGCTTGTTTCAGTCTTTATTGAGCCTAAAACAACAATTGCCAATACAATGTCATTAGAGTATACCTGATTACACCAAAAACATAACAATAAAATGCTGTTTAACTTGACTTTCTGGACATAACAATAAATTGTAGTTTAACTTGACTTTTGTAATTATTACGTAGAAAATTCGCAGAAATAGGCTGTGTGCTCATTCATTTTCTTCTGAAAAATGTTTTGAGTTGTTGGAACTTGATGATTGAGTTTCTATGAACAAACAGTTCGAGTTAATTCCTATGCTTGCTATATTGTTTTGGTTGTGAATAATGCTTATTTTTCTTTACTGTGAGTTGTTTAGTATTTTCTGGGCTGTTATATATGCGAATCATCATAGATATCGTGTAGCATCCTTGACGATCAGTGTTCAGGAGCAAACTCCATTTTGTATAATTTCTTGTTAAATTCAACATCTCTCGACTGTAACCTTTATGAAGTTTCACGCTACCTGATCACAGGAATAAAAATTAAATAGAAGATATCTTGTAGCTTCGTTGTCCTTGACATGAATGTAGTGGTTAAATGATAAGTATATGAACTACTATATGCTGGTACATCAAAATGATTCAAATTTGAATATGGACTCTTCTCTCAGATAGTTCATGCCTCAGAGTAAATGAGGATACCAATCGTTCTATAGCAGAGGAGCTCACACTTTCATCTCCGCCGATTGGAATTTCAACTGCAATTGAAAAGGGTAAACTCTATAGCATAAGATATTTTGTAATCAAGAGTTTGAACCATGAAAATATCCAATTATCAGTAAACAGAGGGATTTGGGCTACTCAAGCCATGAATGAGGCCATTTTGGATGAAGCATTTCATGTAAGTCGATTTTCCTTTTATATCCCATGATTATTATAATATAATGCCCATCTGTAATATATATATGCATATAATCTTAAATACAACAAATGATTGTGTTTATTTTGGGAGCAGAATTCCAGCAAGGTTATACTAATATTCAGTGTCAACACTAGTGGGTATTTCCAAGGGTATGCCCAAATGATTTCTTCTGTCGGTTTGAGAAGAGACCAAGTTTGGAGTCAAGGAAATGGTGGTCGTAATTCTTGGGGTCGAAGCTTTGAAGTGAATTGGCTGCGATTGTATGATCTGCCTT</genome_strand>
        <mrna_strand>AAGGAGGTTGTAAGCAGATATGCCATCAGATACTGCAAGAGAAAATGCATCTATAGCTAATTCCATTGAGACCGACTGGAAAAATGAAAGAGGGAATCTTGGCGGACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTCAAGCCTCAGAGTTAATGAGGACACGAATCGTTCTATAGCAGAGGAGCT--CAC-TTCATCTCTGCCAATTGGAATTTCAAGTGCAATTGAAAAGGGTAAACTCTATAGCATAAGATATTTTGTAATCAAGAGTTTGAACCATGAAAATATCCAATTATCAGTAAACAGAGGGATTTGGGCTACTCAAGCCATGAATGAGGCCATTTTGGATGAAGCATTTCAT..................................................................................................................AATTCCAGCAAGGTTATACTAATATTCAGTGTCAACATGAGTGGGTATTTCCAAGGGTACGCCCAAATGATTTCTTCAGTCGGTTTGAGAA-AAACCAAGTATGGAGTCAAGGAAATGGTGGTCGTAATCCTTGGGGTCGAAGCTTTGAAGTGAATTGGCTGCGATTGTATGATCTGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332891" ref_strand="+" ref_description="SGN-E332891 [cTOD-19-A8]">
      <seq>tctcctttccaccggaattattgtgattttaaaggaggttgtaagcagatatgccatcagatactgcaagagaaaatgcatctatagctaattccattgagaccgactggaaaaatgaaagagggaatcttggcggaccagatagttcaagcctcagagttaatgaggacacgaatcgttctatagcagaggagctcacttcatctctgccaattggaatttcaagtgcaattgaaaagggtaaactctatagcataagatattttgtaatcaagagtttgaaccatgaaaatatccaattatcagtaaacagagggatttgggctactcaagccatgaatgaggccattttggatgaagcatttcataattccagcaaggttatactaatattcagtgtcaacatgagtgggtatttccaagggtacgcccaaatgatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="9610" stop="13818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9909" g_stop="10018" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="141" r_length="110" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10019" i_stop="13099" i_length="3081">
            <donor d_prob="0.553" d_score="0.86"/>
            <acceptor a_prob="0.921" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13100" g_stop="13329" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="368" r_length="227" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13330" i_stop="13443" i_length="114">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.635" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13444" g_stop="13518" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="443" r_length="75" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E332891" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9909" e_stop="10018"/>
          <exon e_start="13100" e_stop="13329"/>
          <exon e_start="13444" e_stop="13518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAGGTTGTAAGCAGATATGCCATCAGATACTGCAAGAAAAAATGCAGCTATAGCTAATTCCATAGTGACCGACTACAAAAATGAAAGAAGGAATTTTGACGGACCAGGTAACTCTGATGCGAAATCTATTCAGAATTTAGCTATCTGTGTGGATTTTGTTTTGTTTGTATTTTTTTTTTTAGTAGTTTCTACTGAGATTTGTTACAAGGTTTCGTTGAATGTGTCTGCATGACAAAGACAAGGATGTGGTCATTTACACTGCCCACAATTTAATATTGGTGCAAAAGTTGTATGCTTCAAATAATCTTTTGGCTGGCTTTTCTATTCAACTGATGAGGAATGAGTATTCTTAAGCGTGTTAGGGATGGCAAAACAATTCCAGTCTTTTCTACTTTGACGGGAGCTTCACTTGAGAATTAGAAAGAGCTTGCTGAATTTGATAGAAAGGAGGTCCACTAGTTAGTAATTAGTGATGCCATGAAGAGTTCTAGTTACTTGCATGGTTTCTTGAGGCTGTAAGGTGGCTTGATATTATTAGGTCTTTCCACTAAACCACGAAAAAGTGAAACTAAGAGCCTGTTTGATTGGGCTTATAGCTTTTGACTTATAAGCCAAAATCCGTAAGTTAGGAGTTCTAACTTATGCTTTTGGCTTTTTTTTTTCCTATTTGGCTTAAGAAACTTAAAAACACTTTTTTATTTTACCCAAACACTACAAAAATGCTTAATAACACTTGAAATAAGTCAATCCGAACAGGCTCTAAATCTTTTCATAATTCAATTATGCGTGTTGTTCATTTGTATGAACAGTCATGGCTGTCTTTGAGATTGTGTAGAACAGTGTTGTGAAAAGCGCGCTTCAAAGCGAGGCGACCCATGTGCGCTTTTTTATCTTGAGGCGAGGCGATCTGAAAAAAGCTCTCGCTTCAGATGAAGAAGCGAGAAGCGACCCTAAGGCAAAAGCGCAATAAAGCGCGCTTTTTATAAAAAAAAGCGACAATTAGGGTTTTTTTTAAAAAAAAAAATTTAGGTTTTTTTTTTAAAAAATAATCTGAAATATAACCTTCTTTCTCCTCGCGACTCTTCTTTCACGACTCTTTGCCTTCTTTCTCTCCTCACGACTCTTCTTTCACAATACTTCTTTCCCTTCTTTCTCTCCTGACGATCTCGACTGAGGCTGCCTCTCTCTTCAACCTCCCGCGACTGCAGGTAACTTTTTGTTCATCTCTGTTTTAGCTAATGTTTATTAGTTCATCTCTATGAGTTCCTTTTCTCTTGAAATATTCAATCTTCGCCTGTGCTTCATCTCTTCATCTCTCTGAGTTTCGACTACTCTAGTTTTTTCTTCTCTTCTCTTCTTTTCTTCATCTCTGCTACCTGCGCTGTTTTTTTTTTTATTTTGTGATCAATCTAGCAGCCTTGTTGAAGAATAGGAGTTTGAATCTTTGTGATTTAATTATATTTTTTATTTTTTGCTTTATATGTTATGACTTATGAGTATTTTTGCCTATGTAATTTCTTTCAATCTAAGACTATATTACCTCTATTTAGTTGTTTAATATTTTTTTATTTTTATACTAAATGTCGCTTTTTTTAAAAAAGCGCGCGCTTCGCTTCACGCTTCTGTGAAGCAAGCCGTCGTCGCTTTTTTCCGCTTCTCGCTTACCAAAACACTGGTGTAGAAGTTTCACACCCTCCATGAATTTGTATGCACAAAAGCAGAGATGGTTTAGATGCACAACTTTTATTCCCTCGAATGAATGTGACACTTCAAGTATCTTTTGGTTGGAAATGCTATGAAGTTCATGGAGCAATTATATCATTTCAACACAATTTGTTGGAGAAACAAAGGGCAAAATCGAACTATAAATGTTACTTATTGATGAGAATAAACACTATGGTTTTTTCCTTTTCTTTTTGTGTTAAAACTCTGTTGTCAGCATCCTTTTCTAACATTCCATCAAGATTTTTGCCCTTGTCTCTAATTAGCCTAATAGTTCTTTTTTTCCACATAATGTCCCTCTTGAGATGCCTTAACTTCTTCATAAGGACATAATCTGGACTTCCAGTTACTTGATAATTTTGCCCCCGTTAATAAAATTACCTTATTCTATAAATAAATTAGTGACGATACAAGGAGTTCAGTTACTTGCATAGCTTATTGAGTATGTACAATCTGTCCTGGCCCCTGTCAGCTACAATCTGGCTTGGCATTAATTTGTTTACAATGTTGTAAAAAAGACATGCGATTGTTGAGAAAGTTGAACCTACAAATTTATGGAGTACTTTACTTATTAAGAATTGGAATCCAATTTCACGCCTTCATAATGAACCTGTGGTGTACATAAAGTTTAGAATCTAATGATAAAACTTTCAACCTGTTGTCTTATTGGATTTTAATATTGCAAATCCTCATAGATACCGTGTAGCATTTTTTGATGATCAGTGTTCAGGATCAGGAGCTAACTCCGTTTTTTTGAAATAGGTAACTTTGTATTATATCACAAAACAGTACATGGGTTGTACTGAAATCATTATATACAATTGTCTCCTTTTCCGCTTGTTTCAGTCTTTATTGAGCCTAAAACAACAATTGCCAATACAATGTCATTAGAGTATACCTGATTACACCAAAAACATAACAATAAAATGCTGTTTAACTTGACTTTCTGGACATAACAATAAATTGTAGTTTAACTTGACTTTTGTAATTATTACGTAGAAAATTCGCAGAAATAGGCTGTGTGCTCATTCATTTTCTTCTGAAAAATGTTTTGAGTTGTTGGAACTTGATGATTGAGTTTCTATGAACAAACAGTTCGAGTTAATTCCTATGCTTGCTATATTGTTTTGGTTGTGAATAATGCTTATTTTTCTTTACTGTGAGTTGTTTAGTATTTTCTGGGCTGTTATATATGCGAATCATCATAGATATCGTGTAGCATCCTTGACGATCAGTGTTCAGGAGCAAACTCCATTTTGTATAATTTCTTGTTAAATTCAACATCTCTCGACTGTAACCTTTATGAAGTTTCACGCTACCTGATCACAGGAATAAAAATTAAATAGAAGATATCTTGTAGCTTCGTTGTCCTTGACATGAATGTAGTGGTTAAATGATAAGTATATGAACTACTATATGCTGGTACATCAAAATGATTCAAATTTGAATATGGACTCTTCTCTCAGATAGTTCATGCCTCAGAGTAAATGAGGATACCAATCGTTCTATAGCAGAGGAGCTCACACTTTCATCTCCGCCGATTGGAATTTCAACTGCAATTGAAAAGGGTAAACTCTATAGCATAAGATATTTTGTAATCAAGAGTTTGAACCATGAAAATATCCAATTATCAGTAAACAGAGGGATTTGGGCTACTCAAGCCATGAATGAGGCCATTTTGGATGAAGCATTTCATGTAAGTCGATTTTCCTTTTATATCCCATGATTATTATAATATAATGCCCATCTGTAATATATATATGCATATAATCTTAAATACAACAAATGATTGTGTTTATTTTGGGAGCAGAATTCCAGCAAGGTTATACTAATATTCAGTGTCAACACTAGTGGGTATTTCCAAGGGTATGCCCAAATGATTTCT</genome_strand>
        <mrna_strand>AAGGAGGTTGTAAGCAGATATGCCATCAGATACTGCAAGAGAAAATGCATCTATAGCTAATTCCATTGAGACCGACTGGAAAAATGAAAGAGGGAATCTTGGCGGACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTCAAGCCTCAGAGTTAATGAGGACACGAATCGTTCTATAGCAGAGGAGCT--CAC-TTCATCTCTGCCAATTGGAATTTCAAGTGCAATTGAAAAGGGTAAACTCTATAGCATAAGATATTTTGTAATCAAGAGTTTGAACCATGAAAATATCCAATTATCAGTAAACAGAGGGATTTGGGCTACTCAAGCCATGAATGAGGCCATTTTGGATGAAGCATTTCAT..................................................................................................................AATTCCAGCAAGGTTATACTAATATTCAGTGTCAACATGAGTGGGTATTTCCAAGGGTACGCCCAAATGATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262017" ref_strand="+" ref_description="SGN-E262017 [cLEG-58-L5]">
      <seq>gaatttcaagtgcaattgaaaagggtaaactctatggcataagatattttgtaatcaagagtttaaaccatgaaaatatccaattatcagtaaacagagggatttgggctactcaagccatgaatgaggccattttggatgaagcatttcataattccagcaaggttatactaatattcagtgtcaacatgagtgggtatttccaagggtacgcccaaatgatttcttctgtcggtttgagaagagaccaagtttggagtcaaggaaatggtggtcgtaatccttggggtcgaagctttgaagtgaattggctgcgattgtatgatctgcctttccaaagaactcttcaccttaagaatccatggaatcaagacaaaccagtcaaaattagtagagattgccaggagttacctccagatattggtgaagctttatgtgagcttcttgaaggacaggattctatggatgttgatttgaaaatggatacctttgcaaggaatgatctctcttctataaggccatatgtagagccttcactgcatcttggatttcaagacagtaatgcatctctggtacctaatgggaccatgttttatccctcttcactctatctacatcaaattgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="12878" stop="14468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13178" g_stop="13329" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13330" i_stop="13443" i_length="114">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.635" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13444" g_stop="13695" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="404" r_length="252" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13696" i_stop="13796" i_length="101">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13797" g_stop="13873" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="481" r_length="77" r_score="0.935"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13874" i_stop="14020" i_length="147">
            <donor d_prob="0.569" d_score="0.90"/>
            <acceptor a_prob="0.969" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14021" g_stop="14168" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="629" r_length="148" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E262017" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13178" e_stop="13329"/>
          <exon e_start="13444" e_stop="13695"/>
          <exon e_start="13797" e_stop="13873"/>
          <exon e_start="14021" e_stop="14168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTCAACTGCAATTGAAAAGGGTAAACTCTATAGCATAAGATATTTTGTAATCAAGAGTTTGAACCATGAAAATATCCAATTATCAGTAAACAGAGGGATTTGGGCTACTCAAGCCATGAATGAGGCCATTTTGGATGAAGCATTTCATGTAAGTCGATTTTCCTTTTATATCCCATGATTATTATAATATAATGCCCATCTGTAATATATATATGCATATAATCTTAAATACAACAAATGATTGTGTTTATTTTGGGAGCAGAATTCCAGCAAGGTTATACTAATATTCAGTGTCAACACTAGTGGGTATTTCCAAGGGTATGCCCAAATGATTTCTTCTGTCGGTTTGAGAAGAGACCAAGTTTGGAGTCAAGGAAATGGTGGTCGTAATTCTTGGGGTCGAAGCTTTGAAGTGAATTGGCTGCGATTGTATGATCTGCCTTTTCAAAGAACTCTTCACCTTAAGAATCCATGGAATCAAAACAAACCAGTCAAAATTAGTAGAGATTGTCAGGCATGGGTTATATTCTTGTCTTAGTACTATTCACTTAATTTTTCAATGTACTCTTGTTAGTAGAGAGGCTTTTATGACCCTGGTACATGTATTGCTAACAGGAGTTACCTCCAGATATTGGTGAAGCTTTATGTGAGCTCCTTGATGGACAGGATGCTTTGGATGTTAATTTGAAAATGTATAGCTCTTTCCTTGAAAACTTAAATAGTGCCCGTTCCATTATTTGGAAACATACAGCCTTTTTTCAAAATTGAATTAGTGCTAGAGTTGTGGAAAAATTGGTCCAAATGATTTTTCTCTTTACAATTGTTATTGGCTCATCCAGGGATGTCTTTGCAAGGAATGAGCTCTCTTCTAAAAGGCCATATGTAGAGCCTTCACTGCATCTTGGAGATCAAGACTATAATGCATCTCTGATACCTAATGGGACCATGTTTTCACCCTCTTTACTCTACCAACATCAAATTGATGCT</genome_strand>
        <mrna_strand>GAATTTCAAGTGCAATTGAAAAGGGTAAACTCTATGGCATAAGATATTTTGTAATCAAGAGTTTAAACCATGAAAATATCCAATTATCAGTAAACAGAGGGATTTGGGCTACTCAAGCCATGAATGAGGCCATTTTGGATGAAGCATTTCAT..................................................................................................................AATTCCAGCAAGGTTATACTAATATTCAGTGTCAACATGAGTGGGTATTTCCAAGGGTACGCCCAAATGATTTCTTCTGTCGGTTTGAGAAGAGACCAAGTTTGGAGTCAAGGAAATGGTGGTCGTAATCCTTGGGGTCGAAGCTTTGAAGTGAATTGGCTGCGATTGTATGATCTGCCTTTCCAAAGAACTCTTCACCTTAAGAATCCATGGAATCAAGACAAACCAGTCAAAATTAGTAGAGATTGCCAG.....................................................................................................GAGTTACCTCCAGATATTGGTGAAGCTTTATGTGAGCTTCTTGAAGGACAGGATTCTATGGATGTTGATTTGAAAAT...................................................................................................................................................GGATACCTTTGCAAGGAATGATCTCTCTTCTATAAGGCCATATGTAGAGCCTTCACTGCATCTTGGATTTCAAGACAGTAATGCATCTCTGGTACCTAATGGGACCATGTTTTATCCCTCTTCACTCTATCTACATCAAATTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E695031" ref_strand="+" ref_description="SGN-E695031 [LH_Ea05H13](-)">
      <seq>ggaaaggatgcgttggatgttgatttgaaaatggatatctttgcaaggaatgatttctcttctaaaaggccatatgtagagccttcactgcatcttggagatcaagactgtaatgcatctctgacacctaatgggaccatgttttatccctctttactctaccaacatcaaattgatgctagtagacttcaggtagcacctcagagaataaatggtgtattttctgctgaggagtcagccattgcatcaggggaatcaaagtcgagacagtcgaggcattcaaagaggaatagaagccttgctaatcttcatgtagacactgaaatgggtcctcaaattaacatgtggggcttgccggcagaaaggagcccacttgctagtaatttgactgaagatgacattcttgaaatgacatatgaagaatatcttgaagcttatagcagaggcagcaaaagatcgccccaccctgtttcaggaccatcacggagtacacagaggtcattagccagtgaagacaactgtgatgattcgcaatcaggttgcagttcgaagaaaaggagaagtcactaaatctccccattggttgcattggttttcttggagagcaggctgatatggttgataattgtgttgtcgcagttgtcgcgaagtggtggctcttgcgaaattgttcctttatttttgtaaaacttaaaacttaggagcatatattgctgtaatgttgtagtatatctgtactgtattatatgaccctcttgtcacccttctccccttcctgttttcgaatggaaaattttatactgtcaatggacaacttgtacaggaaattagcaagtctccctatactcatatattcattcttgataatgtcaagtaagggatagaaatggataatatcttcttgataaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="13719" stop="65675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13842" g_stop="13873" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13874" i_stop="14020" i_length="147">
            <donor d_prob="0.569" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14021" g_stop="14399" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="411" r_length="379" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14400" i_stop="15817" i_length="1418">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15818" g_stop="15874" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="468" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15875" i_stop="16747" i_length="873">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.911" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16748" g_stop="16809" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="530" r_length="62" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16810" i_stop="16890" i_length="81">
            <donor d_prob="0.941" d_score="0.94"/>
            <acceptor a_prob="0.803" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16891" g_stop="17250" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="884" r_length="354" r_score="0.911"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17251" i_stop="18314" i_length="1064">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.58"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18315" g_stop="18357" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="885" r_stop="927" r_length="43" r_score="0.581"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E695031" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>933</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13842" e_stop="13873"/>
          <exon e_start="14021" e_stop="14399"/>
          <exon e_start="15818" e_stop="15874"/>
          <exon e_start="16748" e_stop="16809"/>
          <exon e_start="16891" e_stop="17250"/>
          <exon e_start="18315" e_stop="18357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACAGGATGCTTTGGATGTTAATTTGAAAATGTATAGCTCTTTCCTTGAAAACTTAAATAGTGCCCGTTCCATTATTTGGAAACATACAGCCTTTTTTCAAAATTGAATTAGTGCTAGAGTTGTGGAAAAATTGGTCCAAATGATTTTTCTCTTTACAATTGTTATTGGCTCATCCAGGGATGTCTTTGCAAGGAATGAGCTCTCTTCTAAAAGGCCATATGTAGAGCCTTCACTGCATCTTGGAGATCAAGACTATAATGCATCTCTGATACCTAATGGGACCATGTTTTCACCCTCTTTACTCTACCAACATCAAATTGATGCTAGTAGACTTCACGTAGCACCTCTGAGAATTAATGGTGTATTTTCTGCTGAGGAGTCAGCCATTGCATCAGGGGAATCAAAGTCGGGACAGTCGAGGCATTCACAGAGGAATAGAAGCTTTGCTAATCTCCATGTAGACACTGACATGGGTCCTCAAATTAACATGTGGGGCTTGCCGGCAGAAAGAAGCCCACTGGCTAGTAATTTGACTGAAGATGACATTCTTGAAATGGTTTGTGTTTCCTGTCTTACCATTATTTATTAGAAGTTCCCTTCTTACCCTTAATTTTTAATTATTGTTGCACAAAGGTCAAAAGGATTGTTCCTGTATTTGTCCAGAAGATGAAATACTCTTTTGTACTCTCTCAAAGTTTGCTGATGATTTCAGTTTTCAGCCAAGAAAGCTTATTTCTCTTTTCTGACTATTTTGATATCTAGCGTCCTCCTTTTCTTTGAATGCATATGAATCTGTACTTTGTGTGCATTTATACAAAAATGGTTATCTATTGTTGAAGGCATATGCCAGAAATTGCCCAATTCAGTAATTTTTAACTTACAAGCCCTTCACCAGATTTCTTGATACTGGACCATGTATCATCTGATTCTTTCTGTAGTTAGACTTTCAAATCTTCTGTTTGTATGATAAGACTCACAGGTTTGGACTTACAATTCCTTAAACAAATGCACATCTATTGAACCTTGATACCATTAATTGTATTACTTTATTATCATTAAGTATCAAGGTGTTTGTTTAAATCAAACTTCGTAGCAAAATGGTTTATAAGATTTTAGTTTAATTTCTAACTTTACATGAATCCTTGTTGTCTTAGAAGTCAATGTAAGTCCTTTTTCATTGAGTAATACTTCCTGCGGGTATAGAAATAAATGGTTTATAAGATTTTAGTTTATTTTCAATAGTAGATTGGAAAGTTATCAGGTTATTCACATCCAAGGGTGTGTGACCTGGTGGTCAATGAAGTGGGCTGAGAACTATGATGTCTCAAGTTGAATACCCAACAGAGGTAAAAACTAGGTGATTTCTACCTCAACAGAGTTACCTGGTAGCCGTACCTATGCTGCTGGTGGAGTCCGCAGGTATCTAGTGGGATTAGTCAAGGTGCACACAAGCTGGCCGGACACCACCAGTTATAAGAAGTTATTAGGTTATTCCTATTTTATGGGTGAAGTTTTTCTTCTTCTTTGGTGCTTTATGCACCTTGACAAAGGTGCTAGTCTAAGGAAATGCTAGGTGGGATTCGTAGACATTCTTCTTCTTTACATTTGCCCCCTACCTCCCATTAAGTAACACACACACACCAGCAACTTCTCTCTTTCCACCTCTCTTGCATGGCTGCTATTTAAGGCCTTCTGACTCATATTGTCTCTTAGACTGCTGCATTATTGATATTTTCAAGACACTACAGTTCTTATGTTCTTAATACATCATATTTATTCACCTGGCTCCTAGCTATGAACTTAGCAGGTTCCATATTCTCTGTCCTTGCCGAATTTAGTTTGAAGAATTTTTTTTAACAAGTGTAATACTTCTTGAACCACATGTTGTAGCTGTTAGACCTACCAGCAAATCATGTTGCCATGATTAAGATATTACTGTAAACTTGCTGTTCATACTCTTTTCTCTTGTTGTAGACATATGAAGAGTATCTTGAAGCTTGTAGCAGAGGCAGCAAAAGATCGCCCCACCCTGTTAGTAATCTTTGACATTTTTTATGTTATATATTCCTGTATTATCGAATAAACTCATGAACCATGCTCTGTTGGGTTGGATTTTGAACTGTAAAAAGTTTACCTTTATCCTTTTAGTTAATCTATGTTCTGGAAAATCTATTCTAATTTTCTTTCTTTACGGAGAAAAGCTTGTAGCATTTAGCATTTCCTCATAGTGCTATAAGCAAGAGATGGTTAGCTCAATTGAGGAATTTGTGTCTAAGTATCAAGTTTGAACCTTGCACCTAGTGAACTAAGTCTAGTATTTAAGTGGAGAAGGACAGAGGGGCGGGTCCATCATCTCCGGGTTTTGAAACTCACGGACGCCCAAACTGTTGGCTCCAGATGAACTTCTTGTTCATAAAAAACTTGGGGCGACTCCCATCCCTCTTTTTTCTCCATGCTATCTAGTTTTTTCTCCATGCTATCTAGTGGTTGATGATCTAAATGTGGTTGGTTCTTTGGGTGAAGTATTGTGATAAATTCATGTGCTATAGTTAGGGTCCTCGAAATTTCAGTTTCTGTTCTACTCTTTAGCATGATGTGAGTCTTCGGTATCTACCATTTCACTACCCAGGCATCTTTAACGTGAATCACATTCCATGAATATGATATCTATCTAGTTTTGTTGATGACATTTCCTTTTCTTTTCTCTAGCATGATTAAGTGGTTCATTAATGTATTTAAACTCGGTTTTTGAAAGTGCTCTTGTTCGATATATGTATCTGTGGGTGTTTCTTAGTGTTGATATCCATGACTTGCACACAGATTTTTAAAGAATCTTTCGCTAGAAAGGATTCTGAATAAAACGTCAGGTTTCCATTATGCAATTAGTTACCTCTCTTTATCTAGGTTTCAGGACCATCACGGAGTACACAGAGGTCATTAGCCAGTCAAGAAAACTGTGAAGATTCGTAAGTTTTTTTACTTCTCATTTCCAACACACTTGGGATGCAACGAACCAGCTGAGTGACCTATATCTATTATCTTTGCAGGCAATCAGGTCGCAGTTCAAAGAAAAGGAGAGGTCACTAAATCTCCCCATTGGTTGAATTGGTTTTCTTGGCGAGCAGGCTGATATGGTTGATAATTGTATTGTTGCAGTTGTCGCGAAGTGGTGGTTCTTGCGAAATTGTTTCTTTATTTTTGTAAAACTTAAAACTTAAAACTTAGGAGCATATATTGCTATAATGTTGGAGTATATCTGTACTGTATTATATGACCCTCTTGTCACCCTTCTCTCCTTCCTGTTTTCGAATGGAAACTTTTATACTGTTAATGG-GAACTTGTACTGGAAATTAGCAAGTCTCTCTATACTCATATATTCATTCTTGATTCAGTCAAGTACTGTATAGATCTTAATTTTTGGGATGGAGAGGAATCTTTCTTCTTCCTTGTTTTCCTTGTGATGCTACTTGTTATTCTTCAACGTCATTTTAATGGTCTATCAAATATGTATATTCACGTTCGAGTTCTAGGTATGAAAAAATCATGTGTGTCCGTAATAGTTGAGGATTAGTGTGGTTATCGAACACTAGATGGGAAATAGATATTCGGAGGAAGACTAGTCTTTGAGAGTTTTCAACACTGATGAATTGCTCTTGGGGTTGTGGTCTGCCTTAAAAGACAACATGTTGGATATCAAAATAGTGTTAGATAGTTTGTAATATATAAATACATGTCTGTTTGTGATGGAGTATGATTACTTTGAAAAGTTATTTTATGATTATAAGAACTCTTGAAGTACTATAAAAAAATAATATTTAGATATAAACACGTTTTATTTTATTTTGAAGGAGAATTGATTGTATTTTTCTGATTTTGTATTCGAAAAATATATCTTAGAAAGTTATGTGATGATATGAAATACTCACTCTTAATTCCGCTTCCACCTTACATTGGTATCAAAGCTAGATAATCAAAACTAGAACTATGGAAAACAAATCAGAAGCAACAAATCTACAGAAACAGGTATACACATTTAAGTTCATGAGTAGCTAAACTAATTTATTCCTGATAATCTCTTGTTGATTATAATTGTTTATCATGTTTTAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTGCGAATAAGTATGCCCAGACTATACCATCCTAAAGTTGAAACCAATAGGCAAGAAGGTCGTTTAGGGGAGTAAACAAAGTTGAGGCGCTGTTAGGGTAACTAATCAAAGAAGAAAACTGTAGTAGTGACCAGACGAGATGATTATTAAACAATTATTATTACATAATAAATAAGTATAATCCATTGAGAGGTTGGAAGGAATAAAATCTTTAGCGAACAAATGAATAAAATGAACTCCTATTTATTAGATGATGATGTTAATTACAAAACATTAATACTCTATATATTAAAAGATCTTAATACAGATATAAAAAGAGAAATTTATGATATGTTGGTAACATATGAAGTAATAGAAGTAAC</genome_strand>
        <mrna_strand>GGAAAGGATGCGTTGGATGTTGATTTGAAAAT...................................................................................................................................................GGATATCTTTGCAAGGAATGATTTCTCTTCTAAAAGGCCATATGTAGAGCCTTCACTGCATCTTGGAGATCAAGACTGTAATGCATCTCTGACACCTAATGGGACCATGTTTTATCCCTCTTTACTCTACCAACATCAAATTGATGCTAGTAGACTTCAGGTAGCACCTCAGAGAATAAATGGTGTATTTTCTGCTGAGGAGTCAGCCATTGCATCAGGGGAATCAAAGTCGAGACAGTCGAGGCATTCAAAGAGGAATAGAAGCCTTGCTAATCTTCATGTAGACACTGAAATGGGTCCTCAAATTAACATGTGGGGCTTGCCGGCAGAAAGGAGCCCACTTGCTAGTAATTTGACTGAAGATGACATTCTTGAAATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATGAAGAATATCTTGAAGCTTATAGCAGAGGCAGCAAAAGATCGCCCCACCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAGGACCATCACGGAGTACACAGAGGTCATTAGCCAGTGAAGACAACTGTGATGATTC.................................................................................GCAATCAGGTTGCAGTTCGAAGAAAAGGAGAAGTCACTAAATCTCCCCATTGGTTGCATTGGTTTTCTTGGAGAGCAGGCTGATATGGTTGATAATTGTGTTGTCGCAGTTGTCGCGAAGTGGTGGCTCTTGCGAAATTGTTCCTTTATTTTTG-------TAAAACTTAAAACTTAGGAGCATATATTGCTGTAATGTTGTAGTATATCTGTACTGTATTATATGACCCTCTTGTCACCCTTCTCCCCTTCCTGTTTTCGAATGGAAAATTTTATACTGTCAATGGACAACTTGTACAGGAAATTAGCAAGTCTCCCTATACTCATATATTCATTCTTGATAATGTCAAGTAAGGGATAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGATAATATCTTCTTGATAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413810" ref_strand="-" ref_description="SGN-E413810 [STM-18-B9]">
      <seq>tcaaattaacatgtggggcttgccggcagaaaggagcccacttgctagtaatttgactgaagatgacattcttgaaatgacatatgaagagtatcttgaagcttatagcagaggcagcaaaagatcgccccaccctgtttcaggaccatcacggagtacacagaggtcattagccagtgaagaaaactgtgatgattcgcaatcaggttgcagttcgaagaaaaggagaagtcactaaatctccccattggttgcattggttttcttggcgagcaggctgatttggttgataattgtattgttgcagttgtcgcgaagtggtggctcttgcgaattgttcctttacacttttgtaaaacttaaaacttaggagcatatattgctataatgttgtagtatatctgtactgtattatatgaccctcttgtcacccttctccccttcctgttttcgaatggaaaattttatactgtcaatggtaacttgtacaggaaattagcaagtctctctatactcatatattcatttatcaataattcattcttgataaaaaaaaaaaaagttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="14021" stop="17538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14321" g_stop="14399" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14400" i_stop="15817" i_length="1418">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15818" g_stop="15874" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="136" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15875" i_stop="16747" i_length="873">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.911" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16748" g_stop="16809" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="198" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16810" i_stop="16890" i_length="81">
            <donor d_prob="0.941" d_score="0.96"/>
            <acceptor a_prob="0.803" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16891" g_stop="17222" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="524" r_length="326" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="547" polyA_stop="561"/>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E413810" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413810" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14321" e_stop="14399"/>
          <exon e_start="15818" e_stop="15874"/>
          <exon e_start="16748" e_stop="16809"/>
          <exon e_start="16891" e_stop="17222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATTAACATGTGGGGCTTGCCGGCAGAAAGAAGCCCACTGGCTAGTAATTTGACTGAAGATGACATTCTTGAAATGGTTTGTGTTTCCTGTCTTACCATTATTTATTAGAAGTTCCCTTCTTACCCTTAATTTTTAATTATTGTTGCACAAAGGTCAAAAGGATTGTTCCTGTATTTGTCCAGAAGATGAAATACTCTTTTGTACTCTCTCAAAGTTTGCTGATGATTTCAGTTTTCAGCCAAGAAAGCTTATTTCTCTTTTCTGACTATTTTGATATCTAGCGTCCTCCTTTTCTTTGAATGCATATGAATCTGTACTTTGTGTGCATTTATACAAAAATGGTTATCTATTGTTGAAGGCATATGCCAGAAATTGCCCAATTCAGTAATTTTTAACTTACAAGCCCTTCACCAGATTTCTTGATACTGGACCATGTATCATCTGATTCTTTCTGTAGTTAGACTTTCAAATCTTCTGTTTGTATGATAAGACTCACAGGTTTGGACTTACAATTCCTTAAACAAATGCACATCTATTGAACCTTGATACCATTAATTGTATTACTTTATTATCATTAAGTATCAAGGTGTTTGTTTAAATCAAACTTCGTAGCAAAATGGTTTATAAGATTTTAGTTTAATTTCTAACTTTACATGAATCCTTGTTGTCTTAGAAGTCAATGTAAGTCCTTTTTCATTGAGTAATACTTCCTGCGGGTATAGAAATAAATGGTTTATAAGATTTTAGTTTATTTTCAATAGTAGATTGGAAAGTTATCAGGTTATTCACATCCAAGGGTGTGTGACCTGGTGGTCAATGAAGTGGGCTGAGAACTATGATGTCTCAAGTTGAATACCCAACAGAGGTAAAAACTAGGTGATTTCTACCTCAACAGAGTTACCTGGTAGCCGTACCTATGCTGCTGGTGGAGTCCGCAGGTATCTAGTGGGATTAGTCAAGGTGCACACAAGCTGGCCGGACACCACCAGTTATAAGAAGTTATTAGGTTATTCCTATTTTATGGGTGAAGTTTTTCTTCTTCTTTGGTGCTTTATGCACCTTGACAAAGGTGCTAGTCTAAGGAAATGCTAGGTGGGATTCGTAGACATTCTTCTTCTTTACATTTGCCCCCTACCTCCCATTAAGTAACACACACACACCAGCAACTTCTCTCTTTCCACCTCTCTTGCATGGCTGCTATTTAAGGCCTTCTGACTCATATTGTCTCTTAGACTGCTGCATTATTGATATTTTCAAGACACTACAGTTCTTATGTTCTTAATACATCATATTTATTCACCTGGCTCCTAGCTATGAACTTAGCAGGTTCCATATTCTCTGTCCTTGCCGAATTTAGTTTGAAGAATTTTTTTTAACAAGTGTAATACTTCTTGAACCACATGTTGTAGCTGTTAGACCTACCAGCAAATCATGTTGCCATGATTAAGATATTACTGTAAACTTGCTGTTCATACTCTTTTCTCTTGTTGTAGACATATGAAGAGTATCTTGAAGCTTGTAGCAGAGGCAGCAAAAGATCGCCCCACCCTGTTAGTAATCTTTGACATTTTTTATGTTATATATTCCTGTATTATCGAATAAACTCATGAACCATGCTCTGTTGGGTTGGATTTTGAACTGTAAAAAGTTTACCTTTATCCTTTTAGTTAATCTATGTTCTGGAAAATCTATTCTAATTTTCTTTCTTTACGGAGAAAAGCTTGTAGCATTTAGCATTTCCTCATAGTGCTATAAGCAAGAGATGGTTAGCTCAATTGAGGAATTTGTGTCTAAGTATCAAGTTTGAACCTTGCACCTAGTGAACTAAGTCTAGTATTTAAGTGGAGAAGGACAGAGGGGCGGGTCCATCATCTCCGGGTTTTGAAACTCACGGACGCCCAAACTGTTGGCTCCAGATGAACTTCTTGTTCATAAAAAACTTGGGGCGACTCCCATCCCTCTTTTTTCTCCATGCTATCTAGTTTTTTCTCCATGCTATCTAGTGGTTGATGATCTAAATGTGGTTGGTTCTTTGGGTGAAGTATTGTGATAAATTCATGTGCTATAGTTAGGGTCCTCGAAATTTCAGTTTCTGTTCTACTCTTTAGCATGATGTGAGTCTTCGGTATCTACCATTTCACTACCCAGGCATCTTTAACGTGAATCACATTCCATGAATATGATATCTATCTAGTTTTGTTGATGACATTTCCTTTTCTTTTCTCTAGCATGATTAAGTGGTTCATTAATGTATTTAAACTCGGTTTTTGAAAGTGCTCTTGTTCGATATATGTATCTGTGGGTGTTTCTTAGTGTTGATATCCATGACTTGCACACAGATTTTTAAAGAATCTTTCGCTAGAAAGGATTCTGAATAAAACGTCAGGTTTCCATTATGCAATTAGTTACCTCTCTTTATCTAGGTTTCAGGACCATCACGGAGTACACAGAGGTCATTAGCCAGTCAAGAAAACTGTGAAGATTCGTAAGTTTTTTTACTTCTCATTTCCAACACACTTGGGATGCAACGAACCAGCTGAGTGACCTATATCTATTATCTTTGCAGGCAATCAGGTCGCAGTTCAAAGAAAAGGAGAGGTCACTAAATCTCCCCATTGGTTGAATTGGTTTTCTTGGCGAGCAGGCTGATATGGTTGATAATTGTATTGTTGCAGTTGTCGCGAAGTGGTGGTTCTTGCGAAATTGTTTCTTTATTTTTGTAAAACTTAAAACTTAAAACTTAGGAGCATATATTGCTATAATGTTGGAGTATATCTGTACTGTATTATATGACCCTCTTGTCACCCTTCTCTCCTTCCTGTTTTCGAATGGAAACTTTTATACTGTTAATGGGAACTTGTACTGGAAATTAGCAAGTCTCTCTATACTCATATATTC</genome_strand>
        <mrna_strand>TCAAATTAACATGTGGGGCTTGCCGGCAGAAAGGAGCCCACTTGCTAGTAATTTGACTGAAGATGACATTCTTGAAATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATGAAGAGTATCTTGAAGCTTATAGCAGAGGCAGCAAAAGATCGCCCCACCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAGGACCATCACGGAGTACACAGAGGTCATTAGCCAGTGAAGAAAACTGTGATGATTC.................................................................................GCAATCAGGTTGCAGTTCGAAGAAAAGGAGAAGTCACTAAATCTCCCCATTGGTTGCATTGGTTTTCTTGGCGAGCAGGCTGATTTGGTTGATAATTGTATTGTTGCAGTTGTCGCGAAGTGGTGGCTCTTGCG-AATTGTTCCTTTACACTT-T----TGTAAAACTTAAAACTTAGGAGCATATATTGCTATAATGTTGTAGTATATCTGTACTGTATTATATGACCCTCTTGTCACCCTTCTCCCCTTCCTGTTTTCGAATGGAAAATTTTATACTGTCAATGGTAACTTGTACAGGAAATTAGCAAGTCTCTCTATACTCATATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596271" ref_strand="+" ref_description="SGN-E596271 [39562]">
      <seq>tcgcaatcaggttgcagtttgaagaaaaggagaagtcactatatctccccattggttgcattggttttcttggcgagcaggctgatatggttgataattgtattgttgcagttgtcgcgaagtggtggctcttgcgaaattgttcctttatttttgtaaaacttaaaacttaggagcatatattgctataatgttgtagtatatctgtactgtattaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="16591" stop="17414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16808" g_stop="16809" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16810" i_stop="16890" i_length="81">
            <donor d_prob="0.941" d_score="0.00"/>
            <acceptor a_prob="0.803" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16891" g_stop="17115" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="220" r_length="218" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E596271" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>227</cumulative_length_of_scored_exons>
        <coverage percentage="1.032" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E596271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16808" e_stop="16809"/>
          <exon e_start="16891" e_stop="17115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTAAGTTTTTTTACTTCTCATTTCCAACACACTTGGGATGCAACGAACCAGCTGAGTGACCTATATCTATTATCTTTGCAGGCAATCAGGTCGCAGTTCAAAGAAAAGGAGAGGTCACTAAATCTCCCCATTGGTTGAATTGGTTTTCTTGGCGAGCAGGCTGATATGGTTGATAATTGTATTGTTGCAGTTGTCGCGAAGTGGTGGTTCTTGCGAAATTGTTTCTTTATTTTTGTAAAACTTAAAACTTAAAACTTAGGAGCATATATTGCTATAATGTTGGAGTATATCTGTACTGTATTATAT</genome_strand>
        <mrna_strand>TC.................................................................................GCAATCAGGTTGCAGTTTGAAGAAAAGGAGAAGTCACTATATCTCCCCATTGGTTGCATTGGTTTTCTTGGCGAGCAGGCTGATATGGTTGATAATTGTATTGTTGCAGTTGTCGCGAAGTGGTGGCTCTTGCGAAATTGTTCCTTTATTTTTG-------TAAAACTTAAAACTTAGGAGCATATATTGCTATAATGTTGTAGTATATCTGTACTGTATTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745040" ref_strand="+" ref_description="SGN-E745040 [GI|83833846]">
      <seq>aaaatctcttgttaattataatttttaatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgtccagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="17612" stop="18354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17912" g_stop="18054" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E745040" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>143</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17912" e_stop="18054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCTCTTGTTGATTATAATTGTTTATCATGTTTTAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTGCGAATAAGTATGCCCAGACTATACCATCCTAAAGTTGAAACCAATAGGCA-AGAAGG</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTTTTAATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGTCCAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745037" ref_strand="+" ref_description="SGN-E745037 [GI|83833849]">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcctagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="17612" stop="18354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17912" g_stop="18054" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E745037" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>143</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17912" e_stop="18054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCTCTTGTTGATTATAATTGTTTATCATGTTTTAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTGCGAATAAGTATGCCCAGACTATACCATCCTAAAGTTGAAACCAATAGGCA-AGAAGG</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCTAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745038" ref_strand="+" ref_description="SGN-E745038 [GI|83833848]">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcccagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="17612" stop="18354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17912" g_stop="18054" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E745038" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>143</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17912" e_stop="18054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCTCTTGTTGATTATAATTGTTTATCATGTTTTAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTGCGAATAAGTATGCCCAGACTATACCATCCTAAAGTTGAAACCAATAGGCA-AGAAGG</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCCAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745039" ref_strand="+" ref_description="SGN-E745039 [GI|83833847]">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcccagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="17612" stop="18354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17912" g_stop="18054" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E745039" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>143</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17912" e_stop="18054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCTCTTGTTGATTATAATTGTTTATCATGTTTTAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTGCGAATAAGTATGCCCAGACTATACCATCCTAAAGTTGAAACCAATAGGCA-AGAAGG</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCCAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745041" ref_strand="+" ref_description="SGN-E745041 [GI|83833845]">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcccagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="17612" stop="18354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17912" g_stop="18054" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E745041" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>143</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17912" e_stop="18054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCTCTTGTTGATTATAATTGTTTATCATGTTTTAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTGCGAATAAGTATGCCCAGACTATACCATCCTAAAGTTGAAACCAATAGGCA-AGAAGG</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCCAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354702" ref_strand="+" ref_description="SGN-E354702 [cLHT-5-D15]">
      <seq>aaaaacatttgacacaaataaagattgaattaatagatgaaaacaacataataaaacaaaaaccattaaaatataatttggatgatttaaaagaattcaaaatacatatagatgaactattagagaataattatatacaataaaacaatagtaaacatacaagtccagcatttatagataataaacatagtgaacaaaaacgaggtaaaagtagaatggttatagattatcgcaacctaaatgctaaaactaaaacatataattacccaataccaaataagatactaaaaataagacaaatacaaggatataactatttaagtaaatttgactataaatcaggattttatcacctaaaattagaagaagaatctaaaccgctaacagcattcacagtaccgcaaggtttctataaatggaatattttaccttttggatataaaaatgcaccaagtagatatcaacattttatggataactatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="-" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="42351" stop="41268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42051" g_stop="41568" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="-" ref_id="SGN-E354702" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42051" e_stop="41568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACATAAGACAAAAGTAAAAATTGAACTAATAGATGAAAGTAGTATAATAACACAGAAACCATTAAAATATAACTTTGATGATTTAAAAGAATTCAAAATACATATAGATGAACTATTAGAAAATAATTACATACAAGAAAGTAATAGTAAACATACAATTCCAGCGTTTATAG-TTATAAAAATAGTGAACAAAAAAGAGGTAAAAGCAGAATGGTTATAGATTATCGCAATTTAAATGCTAAAACTAAAACATATAATTACCCAATACCAAATAAAATACTAAAAATAGGACAGATACAAGGATATAATTATTTCAGTAAATTCGATTGTAAATCAGGATTTTATCACCTAAAACTAGAAGAAGAATCTAAACAGCTAACAGCATTCACAGTACCGCAAGGTTTCTATAAATGGAATGTATTACCATTTGGATATAAGAACGCACCAGGTAGATATCAACATTTTATGGACAACCACTTT</genome_strand>
        <mrna_strand>AAAAACATTTGACACAAATAAAGATTGAATTAATAGATGAAAACAACATAATAAAACAAAAACCATTAAAATATAATTTGGATGATTTAAAAGAATTCAAAATACATATAGATGAACTATTAGAGAATAATTATATACAATAAAACAATAGTAAACATACAAGTCCAGCATTTATAGATAATAAACATAGTGAACAAAAACGAGGTAAAAGTAGAATGGTTATAGATTATCGCAACCTAAATGCTAAAACTAAAACATATAATTACCCAATACCAAATAAGATACTAAAAATAAGACAAATACAAGGATATAACTATTTAAGTAAATTTGACTATAAATCAGGATTTTATCACCTAAAATTAGAAGAAGAATCTAAACCGCTAACAGCATTCACAGTACCGCAAGGTTTCTATAAATGGAATATTTTACCTTTTGGATATAAAAATGCACCAAGTAGATATCAACATTTTATGGATAACTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343544" ref_strand="+" ref_description="SGN-E343544 [cTOF-19-D13]">
      <seq>atattatataaaaaaataataaaataaaaagaccatatagaccaaaaagaaaaatattccaatgtacttgttataattgcggaaagataggacatttagctagagattgtaaactacccaaagatccgaaaatgaagcaaattgcagaagtaattatagataatcataaatatatgcaaatagaatacatagactatgaattaagtgaagacgatagtatatatgaagtatcagatatagaaactgaaaatgaagaagaaaatattaatctagataataatgaaacagatgaagaaatataatgtctgaagatgagataaaaataatatctaaagaagattatcaaaatgaagaattatcagactaaaaaattatatttgataatacaatttttgaacaaataaaaggaaaagaattagacttaagtgttgaaaaagtacttgaaatacctactctatgaaattggtttaaaagacaaaaagaagaatattatgtagttagtcaaaaagaacatattatagattgtaaatatgcaagaggaaaaacatatatacctatactaagtaaacgaataataaataaagaaatacaagatataaaagctaaaacaccaataaaatatgtacatttaggaggaacagaaatattaataaaagcttgttttagagaaggaatagatacacctattgaaatatacttagcagatgatagaattatacaccctatagaaaaaagtgtaattagtgcagtaaaaggaaactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="-" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="44463" stop="43105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44164" g_stop="43405" g_length="760"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="-" ref_id="SGN-E343544" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44164" e_stop="43405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTATATAAAAAACT-ATAAAATAAAAAGACCATATAGACCAAAAAGAAAAATATCCCAATTTACTTGTTATAATTGCGGAAAGATAGGACATTTAGCTAGAGACTGTAAACTACCCAAAGATTCAAAAAGGAAGCAAATTGCAGAAGTAATTATAGATAATGATAAATATATGCAACTAGAATACATAGACTATGAATTAAGTGAAAACGATAGTATATATGAAGTATCAGATACAGAAACTAAAAATGAAGAAGAAAATATTAATCTAAATAATAATGAAACAGATGAAGAAATATAATGTCTGAGGATGAGATAAAAATAATATCTAAAGAAGATTATCAAAATGAAGAATTATCAGACCAAAAAATTATATTTGATAATACAATTTTTGAACAAATAAAAGGAAAAGAATTAGACTTAAGTGTTGAAAAAGTACTTGAAATACCTACTTTGAGAAATTGGTTTAAAAG--AAAAGGAAGAATATTATGTAGTTAGTCAGAAAGAACATATTATAGATTGTAAATATACAAGAGGAAAAACATATATACCTATACTAAGTAAACGAATAATAAATAAAGAAATACAAGATATAAAAGCTAAAACACCTATAAAATATGTACATTTAGGAGGAACAGAAATATTAATAAAAGTTTGTTTTAGAGAAGAAATAGATACGCCTATTGAAATATACTTAGCAGATGACAGAATCATACACCCTATAGAAAAAAGTGTAATTAGTGCAGTAAAAGGAAACTTA</genome_strand>
        <mrna_strand>ATATTATATAAAAAAATAATAAAATAAAAAGACCATATAGACCAAAAAGAAAAATATTCCAATGTACTTGTTATAATTGCGGAAAGATAGGACATTTAGCTAGAGATTGTAAACTACCCAAAGATCCGAAAATGAAGCAAATTGCAGAAGTAATTATAGATAATCATAAATATATGCAAATAGAATACATAGACTATGAATTAAGTGAAGACGATAGTATATATGAAGTATCAGATATAGAAACTGAAAATGAAGAAGAAAATATTAATCTAGATAATAATGAAACAGATGAAGAAATATAATGTCTGAAGATGAGATAAAAATAATATCTAAAGAAGATTATCAAAATGAAGAATTATCAGACTAAAAAATTATATTTGATAATACAATTTTTGAACAAATAAAAGGAAAAGAATTAGACTTAAGTGTTGAAAAAGTACTTGAAATACCTACTCTATGAAATTGGTTTAAAAGACAAAAAGAAGAATATTATGTAGTTAGTCAAAAAGAACATATTATAGATTGTAAATATGCAAGAGGAAAAACATATATACCTATACTAAGTAAACGAATAATAAATAAAGAAATACAAGATATAAAAGCTAAAACACCAATAAAATATGTACATTTAGGAGGAACAGAAATATTAATAAAAGCTTGTTTTAGAGAAGGAATAGATACACCTATTGAAATATACTTAGCAGATGATAGAATTATACACCCTATAGAAAAAAGTGTAATTAGTGCAGTAAAAGGAAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578125" ref_strand="+" ref_description="SGN-E578125 [LE08ED10]">
      <seq>aaaattagaaataaacacaggagatatgaatagacccagtacgtcaagagttaaaaccccagataatagtcccagaaatagtcctagagctagtcctagatggacaccacctacttattatacagaaagttatcaacaatcagatagaaataatgcaatatggaacagtaaattaaataaaaattggataccaaaaccaataagtaaacaatataatttcttagatctagattgtgtcacagacataaataaagcaatattactatggtcaggaaatatatctaaacagttaatagataacaaaatagaaacaacaaaaacaccgagatgcatagaaagaacattcgtaggaacaacaaaattatggatagaaaatctaccccagaaagcttagaagtacttagaagtgataagaaaatggatggatccccatcagcaacaaatatagaaatattagataaatacgaatcagcaataagaaatgaatttggaggtatgaccacagatataaaagaacaaaacagagaaaaaataataaacagacaacttatgacaaaattatctatatgtaaaatgtgttacattgaacaatatacttgtgcatttaaagaatagtactacaaatcaaaatataatttagatgaagcaagagagataagacaacaatattttacaaaattaccagaaccatttagcacaaaataattaaagattgggataacgaagggatagtagatactttaggagctagaataaattcctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="-" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="45426" stop="44062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45126" g_stop="44361" g_length="766"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="764" r_length="764" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="-" ref_id="SGN-E578125" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45126" e_stop="44361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAGAAATAAACACAGGAGATATGAATCGACCTAGTACGTCAAGAGTTAAAACTCCAGACAATAGTCCCAGAAATAGTCCTAGAATTAGTCCTAGATGGACACCACCAACTTATTATACAGAAAGTTATCAACAATCAGATAGAACTAACGCAATATGGAATAGTAGATTAAATAAAAATTGGACACCAAGACCAATAAACGAACAATATAATTTCTTAGATCTAGATTGTGTCACAGATACAAATAAAGCAATATTACTATGGATAGGAAATATATCTAAGCAACTAATAGATAACAAAATA-AAACAACAGAAACACCAAGGTATATAGAAAGAACATTTGTAGGAACAACAAGATTATGGATAGAAAATCTACCCTTAGAAAGTTTAGAAGTACTTAGAAGTGACAAGAAAATGGATGGATCTCCATCATCAACAAATATAGATATACTAGATAAATATGAATCAGCAATAAGAAGTAAATTTGGAGGTATGACCACAGATATAAGAGAACAAAACAGAGAAAAAATAATAAATAGACAACTTATGACAAAATTAGCTATATGTAAAATGTGTTATATAGAAGAATACACATGTGCATTTAAGGAATACTATTACAAAGCAAAATACAATTTAGATGAAGCAAAAGAAATAAGACAACAATATTTTACAAAATTACCAGAACCATTTAGCACAAAAATAATTAAAGATTGGAATGATGAAGGATTAGTAGATACTTTATGAGGTAGAATAAAATTTTTAC</genome_strand>
        <mrna_strand>AAAATTAGAAATAAACACAGGAGATATGAATAGACCCAGTACGTCAAGAGTTAAAACCCCAGATAATAGTCCCAGAAATAGTCCTAGAGCTAGTCCTAGATGGACACCACCTACTTATTATACAGAAAGTTATCAACAATCAGATAGAAATAATGCAATATGGAACAGTAAATTAAATAAAAATTGGATACCAAAACCAATAAGTAAACAATATAATTTCTTAGATCTAGATTGTGTCACAGACATAAATAAAGCAATATTACTATGGTCAGGAAATATATCTAAACAGTTAATAGATAACAAAATAGAAACAACAAAAACACCGAGATGCATAGAAAGAACATTCGTAGGAACAACAAAATTATGGATAGAAAATCTACCC-CAGAAAGCTTAGAAGTACTTAGAAGTGATAAGAAAATGGATGGATCCCCATCAGCAACAAATATAGAAATATTAGATAAATACGAATCAGCAATAAGAAATGAATTTGGAGGTATGACCACAGATATAAAAGAACAAAACAGAGAAAAAATAATAAACAGACAACTTATGACAAAATTATCTATATGTAAAATGTGTTACATTGAACAATATACTTGTGCATTTAAAGAATAGTACTACAAATCAAAATATAATTTAGATGAAGCAAGAGAGATAAGACAACAATATTTTACAAAATTACCAGAACCATTTAGCAC-AAAATAATTAAAGATTGGGATAACGAAGGGATAGTAGATACTTTAGGAGCTAGAAT-AAATTCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745037" ref_strand="+" ref_description="SGN-E745037 [GI|83833849]">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcctagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="-" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="47035" stop="46294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46735" g_stop="46593" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="-" ref_id="SGN-E745037" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>143</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46735" e_stop="46593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCTCTTGTTGATTATAATTGTTTATCATGTTTTAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTGCGAATAAATATGCCCAGACTATGTCATCCTAAAGTTGAAACCAATAGGCA-AGAAGA</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCTAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745038" ref_strand="+" ref_description="SGN-E745038 [GI|83833848]">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcccagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="-" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="47035" stop="46294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46735" g_stop="46593" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="-" ref_id="SGN-E745038" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>143</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46735" e_stop="46593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCTCTTGTTGATTATAATTGTTTATCATGTTTTAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTGCGAATAAATATGCCCAGACTATGTCATCCTAAAGTTGAAACCAATAGGCA-AGAAGA</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCCAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745039" ref_strand="+" ref_description="SGN-E745039 [GI|83833847]">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcccagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="-" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="47035" stop="46294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46735" g_stop="46593" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="-" ref_id="SGN-E745039" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>143</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46735" e_stop="46593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCTCTTGTTGATTATAATTGTTTATCATGTTTTAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTGCGAATAAATATGCCCAGACTATGTCATCCTAAAGTTGAAACCAATAGGCA-AGAAGA</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCCAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745041" ref_strand="+" ref_description="SGN-E745041 [GI|83833845]">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcccagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="-" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="47035" stop="46294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46735" g_stop="46593" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="-" ref_id="SGN-E745041" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>143</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46735" e_stop="46593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCTCTTGTTGATTATAATTGTTTATCATGTTTTAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTGCGAATAAATATGCCCAGACTATGTCATCCTAAAGTTGAAACCAATAGGCA-AGAAGA</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCCAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437510" ref_strand="+" ref_description="SGN-E437510 [cSTA-4-C5]">
      <seq>ggagaatggtgatggaacaaatgggaaaaggataagggctgaagatgtaatatgtaagctcaaggacgatggcgatttcgatagacttcgcctcaaaattgttcgcagaatgaaagaaaatgtagagttgcgaaatagcttaagagctacagtgaaagaatcagcagcacttaaccgtccaggtgcagaaaatatgaaactgaggcaactgtccgatgctatatatcaagaagttggggacaaagtcatgagtaaaatttcagatgatttgtggaatacaatcagaaccggtgatggcattcaaacggagataaccgaaacggttcaatcagtttacaataagttattgaacccacagctaaatgaagctggtgaatcggcctttcattcagacttgcagccagctcagaatggagttgaaagtaatggacatcttgctgtttctgacagtggtattgatgccacattttctgctgatgcggaaccaagtgaacctcctggttttgcccgattaagttcaaatcagaacggcaaaagtgaccataaggaatcaccgaaagaagtgtcgggaattcctgttccttctgatggaaaagcaaaagaacatatacccagtcagagaacaactgctcacttgaccctttggtacccgacagtgtgggatgtgggtgcgccacctggctttgctataggcacaaaagagaagatncagatgatgttatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="47946" stop="54707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48246" g_stop="48366" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48367" i_stop="53256" i_length="4890">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53257" g_stop="53372" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="237" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53373" i_stop="53915" i_length="543">
            <donor d_prob="0.728" d_score="0.98"/>
            <acceptor a_prob="0.808" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53916" g_stop="54407" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="727" r_length="490" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E437510" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48246" e_stop="48366"/>
          <exon e_start="53257" e_stop="53372"/>
          <exon e_start="53916" e_stop="54407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAATGGGGATGGAACAAATGGGAAAAGGATAAGGGCTGAAGATGTAATATGTAAGCTCAAGGACGATGGCGATTTCGATAAACTTCGCCTCAAAATTGTTCGCCGAATGAAAGAAAATGTCAGTATTTGCTTGTTCTTCTTTGGTTTTTGTTGTTTAGAGTTCTTCATTGGGCTTAAACTGCTAAAGAGTATTTTTTTTAATCTTCGGTTTCTATATTGTTTTTATCTGTTTTTACATCAATTTACTGCTAAATCCTGAGTTGGGTTTTGTTCCATTGAAAGTGTATGTGATTGGTATTGGAGATTCGACGTTTATTATTGGATTTAAGTTATATACACAGGTAGTGATTGTTAGAGTAAAGGTTAATAGGTATTGGAGTGTTTTTTTTTCCCTTCTAGTAGTGTTATTATTGTTACTCTCGTGTATCTTATTCCTGGATTTTATTATTACTAGTTGTTCACTTGGTTTCAGTTATGTAGTGCTTGTTGTTGATAAAGCTCTCTTCTTTTTACAAAATGGCTTATTTGCTACGATTTGATATGCTTTACTTGAGCCGAGGGCCTTCTAGAAACAACCTCTCTGTGCATGCACATCACTTGTGAGAATGGGTATGTTGTTGTTTACACTGGGCGTGAGGTGAGTCGAGGCGTGTAGTTTTTTTGGGCTGGGTGCCTTATATATAGAGAAAAATGAGGCAAGGGATGTAGTTTTTCTAGTCCGGGCGCTTTCTATAGAGGAAAAAAGGTGTGTATAGGTAGGCTCAAGCTAGATAATATTTATGAGCAGAATGAGAAGACTATGATACTTGGCATGTAGTTTTTCTGGTGTGGCTGTCTACTATTGAGAAAAAAGAGGTGTTCAAAGGTACACATGAGCTAAGATTCTGCTTGGGTGGGAGATGATATAAAATCTCTGTATGCCCTGAACTTAAAACAAAAGCATTAGTTAGTAGTAACGACTCATTCAAGAAATGGATTAGTTTTTCTAAACTGTTAAGTTTGTATTCTTCAGCATTGAGGATAAGCTGACCACCTTCAAAAGAATTAGAGATTCCCTATCAGATCTATAATCTGTTTAATATCCTTTATACATGATTGTTTACACCAAACAAGTAAAGATACTATAAAATTCCATTTAACCTTGTGAATTGGACCCATCTGTAAAACATCTTGTATTTCTTCCCTCCATACTACCCACCATATACATGAAGGGATCAGTCTGCACTCCCCCTCCCCCTCCTTTCTTATCCAACAACTAAGAAGGGTCTGATGTATGCTCAGGCATGGTCCAGCTCTTCCCAGTGATGTTGAGAAACAAAATTCCACAACTGAGCAGTGTACTTACAAATGCAAAAGAATGTGTTTGTTTGTCTCCTCAGTCTCCATACATAGAAAACACCTAGGAACAAGTTGTGTTCCCTTCCTCTGTAGCACTTCTTGAGTTAGGCAGGCCCATTTTATAACCAACCAGATGAAGCACTTTACTTTTGTGGGTATGTCGCTTTTCCAGATGATGCATTGGTCATATACTTTAGTCACCAGAAGACCCCTTGTGAAAGCACTCTTTACATAGAAAATCCCATTTCTATTGTGAATGAGAAGAGCTCTATTCTGTATTAATGATACTTGCACTATTTTCCCAATAACAGGGCTATCTCCTATATCTCCCAATCATTTAAAAGCTTCTAAAAGGGATGTCCCACCCTTGCGTTGACCTAGACTTGGACTGTCATCTCCGGATTTACACAAATAAGAAATGGATCAGGGATGCCTAGTAAAGAGGATTTTGTTCAATCTTCTTATCTCTCCAAAATTTTATCCTTGCACCGCTGCGTACCTTTAGGCAGATGTTGGCTTCCATTGATTGCCACAGATTCCTAATTGTTCTCCACACTCCCGCTCCATATGTATGCGGTACCATTTCTGTGCACCATGGATAGCTTCACCATACTTTGTCACAATAACTTTCTTCCATAGAGTCCTATGGAGCTATCCTCTGTGATGTATATCCATAACCATTTCGACAAAAAACACTCATTCAAACGCTGTTTTCTAGTTCACCAGACAATAACCCTTCCCCTCCTTATTCCCTTGCCACAGAAACTTCCTCCTAATTTTATCTAGCTTTTTCACCACCTTTGCTCGGATTGTGAAAAGGGACATCACATAAGTGGGCAGTGAGTCAAGATTAGTAACTTCAAACAAAATTCATTAGGGATAGAGTTTGTTCGTTTCACAGCCACACAAACAAGATACTGAAGTGTTTCACCTAAAATAAAATGATTTCTGTTACAAAAATCACACTCCAAAATATGTATATGAATCAATTCTGTGTCAAAGTTGATGGTAAAAAGTATAGGTAGCATTAAATTTGATGGTCGTGCTTCCAAGTATGTGGAAAAACATGGGTTTGGGGTGGGAGCCAAATGGCAGAGAAAGTTTCTCTGTCGGTTTCTGAAAGCATTAGATACCTGTCTTAGGTTGGTCAACAAAGAATATTCATCCTCATTATATTGAATTTTCATTTAGAATTTTGTCCCTCCTAATTTAGATATTTATTTTCTCAGAGAGAACTTGAGAATAAAGTACCCTACTCTTAGTTTCAAAAAAATAAATAAATAAAGGATCCTACTCTTGATAATAAAATTAAAACATACTTCTTGTCCTTGAGTATATATTTATGTAAAAATAAGATCAAAGATGCACAACGTTTACCTTTGTTATGGTGTACGTAAATGATGTATTTAGAGCTTTGTAATTATTTACATGCTAAATTTAGTATGAGAGGGTGGTTAATTTTTCTAATTGTAAGAAAAAAGAACTATGTATATACTTGATTTGTTTTCAGGTGAGCCTGTGAGGTAAGATAGTTTTTATTTTTGTTCTTCTAATTGATGGATGAATTGTTTGAGGTTGAGGAGCTAGTAGTTGATTGGGGTTTTTGTCCTCTATTGTCTTCTACTTGACTCCCACCAAGAAAAAAACTTTTGGTGCTTAAAGACAGAAGAAGCGCCAATGCCAAATTAATAGCAGTCTATTTTAAGTGTTAGTCAACTTCACTTAGCTGCAAATTGAAAAGAAAGATAACACTAATTCTCAAGGAAGATGATGAGACTTTTCTATCAAATTTTAAAATTTTATATTTATATTATTTTATCTTTTAGTATATGAAAACACTCCCAACGTTTAAATGACCGTTTTATGTTCAGTTAGCCCGCTGTCATGTATTCGAACCCTGCTGCAGACTAAAGCCTGTTACTTAAGTGAAGAAGGGTACAAGCACTGGCCTATCGAGTTTTGCACCGTCCTCTGCTGACCCTGGAGGATTTCACGGTTATTTTAAAAACAAGCAAGAGAAGAAGGAGCATTTTATGCTAAAGTTTTGAATCAATGAAATATATTGTTTATATTGTTCAATATCTTTGGATCAATTAAGGCTGAATAAATTGTTTATCAATTTGTATTTTACTCGTGTCATGTCACTCTACTTTCAAAGTTTGTATCCTCCATAATGAGTTAATACTGAAAAAAGATGAATTGCTTTAACACCAAGAAAGAACCATTGTCTCTTTAGTGAAAATATTTTGTTTTTTTGCGCAAAAAACATCATTTTTTTTGTGAATTTGAAGACATTTGTTTGCAACAGTCGTAATATGTGTTTTCTTAAAGAGCATGTTAGGGCTCAGCTTGATGTAGGATGGACTACAATTGTGTGGGGTTTTGAAGATAGCATAGGTTCTATTGAGCTCTTTTCTAAAATATGCTGATATATTTAGGCAACATCTCTAGCATTGGGCTTTGTTGTTGTGCCTTGGTTTTATTCAAGATACTGTTTTCTGATGATTGAGAAATTCATTTGGGGCCAATCCTTTAAAACCAACTGCGGCCTTTGAAACTCGAGGATAATGAGTCCATGCCTTTTTCCTTCTCCAATAAGATACTAAGTATATTTCGCATGGCACACGGCTCAAGCCTGTGATCAATGTCACAGTCCCTTAACCTTTGCCACTTGAACTAAAGCCCCGGCTGAAGTTTTACTCAATACCTAAGAAAATGAAGGTGAGATTTGAGTTGAAATATAGTCATGAAAATATGGTCTAATAGTTCTCTCTGAAAAAAAAGAAAGAAATTAGTTTTAATGATGTAGCATACCGAATTTAATTGTAAGGATGAAGTGCTGACAAAATTGGCATACAAGAAGTGGAAAAGGGTATATGGGTGGGTTAAAGATACAGACTTTTGACTATGTACAAAATACTCTCCCTGATTTCTCGGTTATCAAGAAAAATAAGACATACACCACATTAAGGATGAAATTGGAAAACAAATCAATAATAGCCTATATGATCGAAAAGTTTATCATTGCCAGTTCTTGATTAAAGAGAGCTCTTTTCTGCCATTAGTTAGTTTCACTTGTCTGATCTGTTTCTAGTTTCTATATTTCCTGTTCTTTTTTGCATTTTCACGATATTCAGAAAGTGTTCAATCATCAGCAACCTACAAAATATAGACTTACATTTCAAAGACTCTCGGGCTTAGTCTCTCCCAAGCAAATATATATGTACCTTCGCCTCTTAAAACTGTAATCTTAATGGTTCTTGTGTGAATGAGTTGGATGTTGGTGCATCTTTTGGATAATGTTCTATCTGCTTGACAATTATGATTACCAAGATAAATAGGCAAAAAACACATAAAAATTCATCAATACATTATTCACTTGAATTGATAACTTGAGAAACTGAAGATAATGGAAAACCTCCAATCCCCTCCTCCTGTGGGTGAAGTGCATTAGTTGACACGGTTATGGTATGTCAGTGGGGCATGAACTTTTTTGTTACATATTTCTGTATCCATTATGTAAATTGATTTGTATATCATTTCTTTTGGCTTACGTGGTATGTTATCTTCTTGCTTTTTCTTCAGATAAGCAAAAGGAACAGAATGATGCTATTACACTTTTAAGCTTACATGTGTGCTCCAGTTGTGTGACAATTGTGTTTTTTTTCAGGTAGAGTTGCGAAATAGCTTAAGAGCTACAGTGAAAGAATCAGCAGCACTTAACCGTCCAGGTGCAGAAAATATGAAACTAAGGCAACTGTCCGATGCTATATATCAAGAAGTTGGGTAGGTCATATTTTCAACCTTTTCCCATGGTTTTGATTTTCTCTTCAAGACACTAGAAACACGCCTGAGCTGTCCTTCGGTAGATCTCAACAACCTCCCCTCCCTTCTTTTAACTGGGTTGTTCAACTAGGTTGTTTCTGTTTCGTCTTTTCTTTCACAAGCTTAGGACCTTTTGACTATAGGATAAGTGGTAGTTGTTTCTTTTTTGGGTGACTGGAAATTGTTGACATGTTTTAAAACAATCTGGGCCTTTCAATTTGGTATTGAAGGAATAATTGTTTATCAACACAATGAAAGAGAATAGTTCTGACGAGTGCAGCAAAAAAGTTGGTACTCGAGGGGGAGGGGTACGCGGATGGCGTGTCATGTGTTAGGAGAGAAATTTAAGGGGCCTAACTGATAGATTCTCAATTATTCTAGTCTTTTTCCCTTTTATTCAAACAGTGAATTATGATTCTATGTTTCAACTAGTGGTATTAAAAGTTAATCTGGTAATGTATATAGAGTTCCACAAATTTAACCTGTTTTGGTCATGAACTATAGGGAAAAAGCCATGAGTAAAATTTCAGATGATTTGTGGAATACAATCAGAACCGGTGATGGCATTCAAACGGAGATAACTGAAACGGTTCAATCAGTTTACAGTAAGTTATTGAACCCACAGCTAAATGAAGCAGGTGAATCGGCCTTTCATTCAGACTTGCAGCCAGCTCAGAATGGAGTTGAAAGTAATGGACATCTTGCTGTTTCTGACAGTTGTATTGATGCCACATTTTCTGCTGATGCGGAACCAAGTGAACCTCCTGGTTTTGCCCAATTAAGTTCAAATCGGAACGGGAAAAGTGACCATAAGGTATCACCGAAAGAAGTGTCAGGAATTCCTGTTCCTTCTGATGGAAAAGCAAAAGAAACATATACCCAGTCAGAGAACAACTGCTCACTTGACCCTTTGATACCCGAAAGTGT-GGATGTGGGTGCGCCACCTGGCTTTGCTATAGGCACAATAGAGAAGAATCCAGATGATGTTAATGATGA</genome_strand>
        <mrna_strand>GGAGAATGGTGATGGAACAAATGGGAAAAGGATAAGGGCTGAAGATGTAATATGTAAGCTCAAGGACGATGGCGATTTCGATAGACTTCGCCTCAAAATTGTTCGCAGAATGAAAGAAAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGTTGCGAAATAGCTTAAGAGCTACAGTGAAAGAATCAGCAGCACTTAACCGTCCAGGTGCAGAAAATATGAAACTGAGGCAACTGTCCGATGCTATATATCAAGAAGTTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAAAGTCATGAGTAAAATTTCAGATGATTTGTGGAATACAATCAGAACCGGTGATGGCATTCAAACGGAGATAACCGAAACGGTTCAATCAGTTTACAATAAGTTATTGAACCCACAGCTAAATGAAGCTGGTGAATCGGCCTTTCATTCAGACTTGCAGCCAGCTCAGAATGGAGTTGAAAGTAATGGACATCTTGCTGTTTCTGACAGTGGTATTGATGCCACATTTTCTGCTGATGCGGAACCAAGTGAACCTCCTGGTTTTGCCCGATTAAGTTCAAATCAGAACGGCAAAAGTGACCATAAGGAATCACCGAAAGAAGTGTCGGGAATTCCTGTTCCTTCTGATGGAAAAGCAAAAG-AACATATACCCAGTCAGAGAACAACTGCTCACTTGACCCTTTGGTACCCGACAGTGTGGGATGTGGGTGCGCCACCTGGCTTTGCTATAGGCACAAAAGAGAAG-ATNCAGATGATGTT-ATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445557" ref_strand="+" ref_description="SGN-E445557 [cSTA-1-C5]">
      <seq>ggagaatggtgatggaacaaatgggaaaaggataagggctgaagatgtaatatgtaagctcaaggacgatggcgatttcgatagacttcgcctcaaaattgttcgcagaatgaaagaaaatgtagagttgcgaaatagcttaagagctacagtgaaagaatcagcagcacttaaccgtccaggtgcagaaaatatgaaactgaggcaactgtccgatgctatatatcaagaagttggggacaaagtcatgagtaaaatttcagatgatttgtggaatacaatcagaaccggtgatggcattcaaacggagataaccgaaacggttcaatcagtttacaataagttattgaacccacagctaaatgaagctggtgaatcggcctttcattcagacttgcagccagctcagaatggagttgaaagtaatggacatcttgctgtttctgacagtggtattgatgccacattttctgctgatgcggaaccaagtgaacctcctggttttgcccgattaagttcaaatcagaacggcaaaagtgaccataaggaatcaccgaaagaagtgtcgggaattcctgttccttctgatggaaaagcaaaagaacatatacccagtcagagaacaactgctcacttgaccctttggtacccgacagtgtgggatgtgggtgcgccacctggctttgctataggcacaaaagagaagatncagatgatgttatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="47946" stop="54707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48246" g_stop="48366" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48367" i_stop="53256" i_length="4890">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53257" g_stop="53372" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="237" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53373" i_stop="53915" i_length="543">
            <donor d_prob="0.728" d_score="0.98"/>
            <acceptor a_prob="0.808" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53916" g_stop="54407" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="727" r_length="490" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E445557" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48246" e_stop="48366"/>
          <exon e_start="53257" e_stop="53372"/>
          <exon e_start="53916" e_stop="54407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAATGGGGATGGAACAAATGGGAAAAGGATAAGGGCTGAAGATGTAATATGTAAGCTCAAGGACGATGGCGATTTCGATAAACTTCGCCTCAAAATTGTTCGCCGAATGAAAGAAAATGTCAGTATTTGCTTGTTCTTCTTTGGTTTTTGTTGTTTAGAGTTCTTCATTGGGCTTAAACTGCTAAAGAGTATTTTTTTTAATCTTCGGTTTCTATATTGTTTTTATCTGTTTTTACATCAATTTACTGCTAAATCCTGAGTTGGGTTTTGTTCCATTGAAAGTGTATGTGATTGGTATTGGAGATTCGACGTTTATTATTGGATTTAAGTTATATACACAGGTAGTGATTGTTAGAGTAAAGGTTAATAGGTATTGGAGTGTTTTTTTTTCCCTTCTAGTAGTGTTATTATTGTTACTCTCGTGTATCTTATTCCTGGATTTTATTATTACTAGTTGTTCACTTGGTTTCAGTTATGTAGTGCTTGTTGTTGATAAAGCTCTCTTCTTTTTACAAAATGGCTTATTTGCTACGATTTGATATGCTTTACTTGAGCCGAGGGCCTTCTAGAAACAACCTCTCTGTGCATGCACATCACTTGTGAGAATGGGTATGTTGTTGTTTACACTGGGCGTGAGGTGAGTCGAGGCGTGTAGTTTTTTTGGGCTGGGTGCCTTATATATAGAGAAAAATGAGGCAAGGGATGTAGTTTTTCTAGTCCGGGCGCTTTCTATAGAGGAAAAAAGGTGTGTATAGGTAGGCTCAAGCTAGATAATATTTATGAGCAGAATGAGAAGACTATGATACTTGGCATGTAGTTTTTCTGGTGTGGCTGTCTACTATTGAGAAAAAAGAGGTGTTCAAAGGTACACATGAGCTAAGATTCTGCTTGGGTGGGAGATGATATAAAATCTCTGTATGCCCTGAACTTAAAACAAAAGCATTAGTTAGTAGTAACGACTCATTCAAGAAATGGATTAGTTTTTCTAAACTGTTAAGTTTGTATTCTTCAGCATTGAGGATAAGCTGACCACCTTCAAAAGAATTAGAGATTCCCTATCAGATCTATAATCTGTTTAATATCCTTTATACATGATTGTTTACACCAAACAAGTAAAGATACTATAAAATTCCATTTAACCTTGTGAATTGGACCCATCTGTAAAACATCTTGTATTTCTTCCCTCCATACTACCCACCATATACATGAAGGGATCAGTCTGCACTCCCCCTCCCCCTCCTTTCTTATCCAACAACTAAGAAGGGTCTGATGTATGCTCAGGCATGGTCCAGCTCTTCCCAGTGATGTTGAGAAACAAAATTCCACAACTGAGCAGTGTACTTACAAATGCAAAAGAATGTGTTTGTTTGTCTCCTCAGTCTCCATACATAGAAAACACCTAGGAACAAGTTGTGTTCCCTTCCTCTGTAGCACTTCTTGAGTTAGGCAGGCCCATTTTATAACCAACCAGATGAAGCACTTTACTTTTGTGGGTATGTCGCTTTTCCAGATGATGCATTGGTCATATACTTTAGTCACCAGAAGACCCCTTGTGAAAGCACTCTTTACATAGAAAATCCCATTTCTATTGTGAATGAGAAGAGCTCTATTCTGTATTAATGATACTTGCACTATTTTCCCAATAACAGGGCTATCTCCTATATCTCCCAATCATTTAAAAGCTTCTAAAAGGGATGTCCCACCCTTGCGTTGACCTAGACTTGGACTGTCATCTCCGGATTTACACAAATAAGAAATGGATCAGGGATGCCTAGTAAAGAGGATTTTGTTCAATCTTCTTATCTCTCCAAAATTTTATCCTTGCACCGCTGCGTACCTTTAGGCAGATGTTGGCTTCCATTGATTGCCACAGATTCCTAATTGTTCTCCACACTCCCGCTCCATATGTATGCGGTACCATTTCTGTGCACCATGGATAGCTTCACCATACTTTGTCACAATAACTTTCTTCCATAGAGTCCTATGGAGCTATCCTCTGTGATGTATATCCATAACCATTTCGACAAAAAACACTCATTCAAACGCTGTTTTCTAGTTCACCAGACAATAACCCTTCCCCTCCTTATTCCCTTGCCACAGAAACTTCCTCCTAATTTTATCTAGCTTTTTCACCACCTTTGCTCGGATTGTGAAAAGGGACATCACATAAGTGGGCAGTGAGTCAAGATTAGTAACTTCAAACAAAATTCATTAGGGATAGAGTTTGTTCGTTTCACAGCCACACAAACAAGATACTGAAGTGTTTCACCTAAAATAAAATGATTTCTGTTACAAAAATCACACTCCAAAATATGTATATGAATCAATTCTGTGTCAAAGTTGATGGTAAAAAGTATAGGTAGCATTAAATTTGATGGTCGTGCTTCCAAGTATGTGGAAAAACATGGGTTTGGGGTGGGAGCCAAATGGCAGAGAAAGTTTCTCTGTCGGTTTCTGAAAGCATTAGATACCTGTCTTAGGTTGGTCAACAAAGAATATTCATCCTCATTATATTGAATTTTCATTTAGAATTTTGTCCCTCCTAATTTAGATATTTATTTTCTCAGAGAGAACTTGAGAATAAAGTACCCTACTCTTAGTTTCAAAAAAATAAATAAATAAAGGATCCTACTCTTGATAATAAAATTAAAACATACTTCTTGTCCTTGAGTATATATTTATGTAAAAATAAGATCAAAGATGCACAACGTTTACCTTTGTTATGGTGTACGTAAATGATGTATTTAGAGCTTTGTAATTATTTACATGCTAAATTTAGTATGAGAGGGTGGTTAATTTTTCTAATTGTAAGAAAAAAGAACTATGTATATACTTGATTTGTTTTCAGGTGAGCCTGTGAGGTAAGATAGTTTTTATTTTTGTTCTTCTAATTGATGGATGAATTGTTTGAGGTTGAGGAGCTAGTAGTTGATTGGGGTTTTTGTCCTCTATTGTCTTCTACTTGACTCCCACCAAGAAAAAAACTTTTGGTGCTTAAAGACAGAAGAAGCGCCAATGCCAAATTAATAGCAGTCTATTTTAAGTGTTAGTCAACTTCACTTAGCTGCAAATTGAAAAGAAAGATAACACTAATTCTCAAGGAAGATGATGAGACTTTTCTATCAAATTTTAAAATTTTATATTTATATTATTTTATCTTTTAGTATATGAAAACACTCCCAACGTTTAAATGACCGTTTTATGTTCAGTTAGCCCGCTGTCATGTATTCGAACCCTGCTGCAGACTAAAGCCTGTTACTTAAGTGAAGAAGGGTACAAGCACTGGCCTATCGAGTTTTGCACCGTCCTCTGCTGACCCTGGAGGATTTCACGGTTATTTTAAAAACAAGCAAGAGAAGAAGGAGCATTTTATGCTAAAGTTTTGAATCAATGAAATATATTGTTTATATTGTTCAATATCTTTGGATCAATTAAGGCTGAATAAATTGTTTATCAATTTGTATTTTACTCGTGTCATGTCACTCTACTTTCAAAGTTTGTATCCTCCATAATGAGTTAATACTGAAAAAAGATGAATTGCTTTAACACCAAGAAAGAACCATTGTCTCTTTAGTGAAAATATTTTGTTTTTTTGCGCAAAAAACATCATTTTTTTTGTGAATTTGAAGACATTTGTTTGCAACAGTCGTAATATGTGTTTTCTTAAAGAGCATGTTAGGGCTCAGCTTGATGTAGGATGGACTACAATTGTGTGGGGTTTTGAAGATAGCATAGGTTCTATTGAGCTCTTTTCTAAAATATGCTGATATATTTAGGCAACATCTCTAGCATTGGGCTTTGTTGTTGTGCCTTGGTTTTATTCAAGATACTGTTTTCTGATGATTGAGAAATTCATTTGGGGCCAATCCTTTAAAACCAACTGCGGCCTTTGAAACTCGAGGATAATGAGTCCATGCCTTTTTCCTTCTCCAATAAGATACTAAGTATATTTCGCATGGCACACGGCTCAAGCCTGTGATCAATGTCACAGTCCCTTAACCTTTGCCACTTGAACTAAAGCCCCGGCTGAAGTTTTACTCAATACCTAAGAAAATGAAGGTGAGATTTGAGTTGAAATATAGTCATGAAAATATGGTCTAATAGTTCTCTCTGAAAAAAAAGAAAGAAATTAGTTTTAATGATGTAGCATACCGAATTTAATTGTAAGGATGAAGTGCTGACAAAATTGGCATACAAGAAGTGGAAAAGGGTATATGGGTGGGTTAAAGATACAGACTTTTGACTATGTACAAAATACTCTCCCTGATTTCTCGGTTATCAAGAAAAATAAGACATACACCACATTAAGGATGAAATTGGAAAACAAATCAATAATAGCCTATATGATCGAAAAGTTTATCATTGCCAGTTCTTGATTAAAGAGAGCTCTTTTCTGCCATTAGTTAGTTTCACTTGTCTGATCTGTTTCTAGTTTCTATATTTCCTGTTCTTTTTTGCATTTTCACGATATTCAGAAAGTGTTCAATCATCAGCAACCTACAAAATATAGACTTACATTTCAAAGACTCTCGGGCTTAGTCTCTCCCAAGCAAATATATATGTACCTTCGCCTCTTAAAACTGTAATCTTAATGGTTCTTGTGTGAATGAGTTGGATGTTGGTGCATCTTTTGGATAATGTTCTATCTGCTTGACAATTATGATTACCAAGATAAATAGGCAAAAAACACATAAAAATTCATCAATACATTATTCACTTGAATTGATAACTTGAGAAACTGAAGATAATGGAAAACCTCCAATCCCCTCCTCCTGTGGGTGAAGTGCATTAGTTGACACGGTTATGGTATGTCAGTGGGGCATGAACTTTTTTGTTACATATTTCTGTATCCATTATGTAAATTGATTTGTATATCATTTCTTTTGGCTTACGTGGTATGTTATCTTCTTGCTTTTTCTTCAGATAAGCAAAAGGAACAGAATGATGCTATTACACTTTTAAGCTTACATGTGTGCTCCAGTTGTGTGACAATTGTGTTTTTTTTCAGGTAGAGTTGCGAAATAGCTTAAGAGCTACAGTGAAAGAATCAGCAGCACTTAACCGTCCAGGTGCAGAAAATATGAAACTAAGGCAACTGTCCGATGCTATATATCAAGAAGTTGGGTAGGTCATATTTTCAACCTTTTCCCATGGTTTTGATTTTCTCTTCAAGACACTAGAAACACGCCTGAGCTGTCCTTCGGTAGATCTCAACAACCTCCCCTCCCTTCTTTTAACTGGGTTGTTCAACTAGGTTGTTTCTGTTTCGTCTTTTCTTTCACAAGCTTAGGACCTTTTGACTATAGGATAAGTGGTAGTTGTTTCTTTTTTGGGTGACTGGAAATTGTTGACATGTTTTAAAACAATCTGGGCCTTTCAATTTGGTATTGAAGGAATAATTGTTTATCAACACAATGAAAGAGAATAGTTCTGACGAGTGCAGCAAAAAAGTTGGTACTCGAGGGGGAGGGGTACGCGGATGGCGTGTCATGTGTTAGGAGAGAAATTTAAGGGGCCTAACTGATAGATTCTCAATTATTCTAGTCTTTTTCCCTTTTATTCAAACAGTGAATTATGATTCTATGTTTCAACTAGTGGTATTAAAAGTTAATCTGGTAATGTATATAGAGTTCCACAAATTTAACCTGTTTTGGTCATGAACTATAGGGAAAAAGCCATGAGTAAAATTTCAGATGATTTGTGGAATACAATCAGAACCGGTGATGGCATTCAAACGGAGATAACTGAAACGGTTCAATCAGTTTACAGTAAGTTATTGAACCCACAGCTAAATGAAGCAGGTGAATCGGCCTTTCATTCAGACTTGCAGCCAGCTCAGAATGGAGTTGAAAGTAATGGACATCTTGCTGTTTCTGACAGTTGTATTGATGCCACATTTTCTGCTGATGCGGAACCAAGTGAACCTCCTGGTTTTGCCCAATTAAGTTCAAATCGGAACGGGAAAAGTGACCATAAGGTATCACCGAAAGAAGTGTCAGGAATTCCTGTTCCTTCTGATGGAAAAGCAAAAGAAACATATACCCAGTCAGAGAACAACTGCTCACTTGACCCTTTGATACCCGAAAGTGT-GGATGTGGGTGCGCCACCTGGCTTTGCTATAGGCACAATAGAGAAGAATCCAGATGATGTTAATGATGA</genome_strand>
        <mrna_strand>GGAGAATGGTGATGGAACAAATGGGAAAAGGATAAGGGCTGAAGATGTAATATGTAAGCTCAAGGACGATGGCGATTTCGATAGACTTCGCCTCAAAATTGTTCGCAGAATGAAAGAAAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGTTGCGAAATAGCTTAAGAGCTACAGTGAAAGAATCAGCAGCACTTAACCGTCCAGGTGCAGAAAATATGAAACTGAGGCAACTGTCCGATGCTATATATCAAGAAGTTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAAAGTCATGAGTAAAATTTCAGATGATTTGTGGAATACAATCAGAACCGGTGATGGCATTCAAACGGAGATAACCGAAACGGTTCAATCAGTTTACAATAAGTTATTGAACCCACAGCTAAATGAAGCTGGTGAATCGGCCTTTCATTCAGACTTGCAGCCAGCTCAGAATGGAGTTGAAAGTAATGGACATCTTGCTGTTTCTGACAGTGGTATTGATGCCACATTTTCTGCTGATGCGGAACCAAGTGAACCTCCTGGTTTTGCCCGATTAAGTTCAAATCAGAACGGCAAAAGTGACCATAAGGAATCACCGAAAGAAGTGTCGGGAATTCCTGTTCCTTCTGATGGAAAAGCAAAAG-AACATATACCCAGTCAGAGAACAACTGCTCACTTGACCCTTTGGTACCCGACAGTGTGGGATGTGGGTGCGCCACCTGGCTTTGCTATAGGCACAAAAGAGAAG-ATNCAGATGATGTT-ATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538848" ref_strand="+" ref_description="SGN-E538848 [TUS-58-E22](-)">
      <seq>ggaaaaggataagggctgaagatgtaatatgtaagctcaaggacgatggcgatttcgataaacttcgcctcaaaattgttcgccgaatgaaagaaaatttagcccgctgtcatgtattcgaaccctgctgcagactaaagcctgttacttaagtgaagaagggtacaagcactggcctatcgagttttgcaccgtcctctgctgaccctggaggatttcacggttattttaaaaacaagcaagagaagaaggagcattttatgctaaagttttgaatcaatgaaatatattgtttatattgttcaatatctttggatcaattaaggctgaataaattgtttatcaatttgtattttactcgtgtcatgtcactctactttcaaagtttgtatcctccataatgagttaatactgaaaaaagatgaattgctttaacaccaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="47969" stop="52107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48269" g_stop="48366" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48367" i_stop="51457" i_length="3091">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51458" g_stop="51811" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="452" r_length="354" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E538848" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48269" e_stop="48366"/>
          <exon e_start="51458" e_stop="51811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGGATAAGGGCTGAAGATGTAATATGTAAGCTCAAGGACGATGGCGATTTCGATAAACTTCGCCTCAAAATTGTTCGCCGAATGAAAGAAAATGTCAGTATTTGCTTGTTCTTCTTTGGTTTTTGTTGTTTAGAGTTCTTCATTGGGCTTAAACTGCTAAAGAGTATTTTTTTTAATCTTCGGTTTCTATATTGTTTTTATCTGTTTTTACATCAATTTACTGCTAAATCCTGAGTTGGGTTTTGTTCCATTGAAAGTGTATGTGATTGGTATTGGAGATTCGACGTTTATTATTGGATTTAAGTTATATACACAGGTAGTGATTGTTAGAGTAAAGGTTAATAGGTATTGGAGTGTTTTTTTTTCCCTTCTAGTAGTGTTATTATTGTTACTCTCGTGTATCTTATTCCTGGATTTTATTATTACTAGTTGTTCACTTGGTTTCAGTTATGTAGTGCTTGTTGTTGATAAAGCTCTCTTCTTTTTACAAAATGGCTTATTTGCTACGATTTGATATGCTTTACTTGAGCCGAGGGCCTTCTAGAAACAACCTCTCTGTGCATGCACATCACTTGTGAGAATGGGTATGTTGTTGTTTACACTGGGCGTGAGGTGAGTCGAGGCGTGTAGTTTTTTTGGGCTGGGTGCCTTATATATAGAGAAAAATGAGGCAAGGGATGTAGTTTTTCTAGTCCGGGCGCTTTCTATAGAGGAAAAAAGGTGTGTATAGGTAGGCTCAAGCTAGATAATATTTATGAGCAGAATGAGAAGACTATGATACTTGGCATGTAGTTTTTCTGGTGTGGCTGTCTACTATTGAGAAAAAAGAGGTGTTCAAAGGTACACATGAGCTAAGATTCTGCTTGGGTGGGAGATGATATAAAATCTCTGTATGCCCTGAACTTAAAACAAAAGCATTAGTTAGTAGTAACGACTCATTCAAGAAATGGATTAGTTTTTCTAAACTGTTAAGTTTGTATTCTTCAGCATTGAGGATAAGCTGACCACCTTCAAAAGAATTAGAGATTCCCTATCAGATCTATAATCTGTTTAATATCCTTTATACATGATTGTTTACACCAAACAAGTAAAGATACTATAAAATTCCATTTAACCTTGTGAATTGGACCCATCTGTAAAACATCTTGTATTTCTTCCCTCCATACTACCCACCATATACATGAAGGGATCAGTCTGCACTCCCCCTCCCCCTCCTTTCTTATCCAACAACTAAGAAGGGTCTGATGTATGCTCAGGCATGGTCCAGCTCTTCCCAGTGATGTTGAGAAACAAAATTCCACAACTGAGCAGTGTACTTACAAATGCAAAAGAATGTGTTTGTTTGTCTCCTCAGTCTCCATACATAGAAAACACCTAGGAACAAGTTGTGTTCCCTTCCTCTGTAGCACTTCTTGAGTTAGGCAGGCCCATTTTATAACCAACCAGATGAAGCACTTTACTTTTGTGGGTATGTCGCTTTTCCAGATGATGCATTGGTCATATACTTTAGTCACCAGAAGACCCCTTGTGAAAGCACTCTTTACATAGAAAATCCCATTTCTATTGTGAATGAGAAGAGCTCTATTCTGTATTAATGATACTTGCACTATTTTCCCAATAACAGGGCTATCTCCTATATCTCCCAATCATTTAAAAGCTTCTAAAAGGGATGTCCCACCCTTGCGTTGACCTAGACTTGGACTGTCATCTCCGGATTTACACAAATAAGAAATGGATCAGGGATGCCTAGTAAAGAGGATTTTGTTCAATCTTCTTATCTCTCCAAAATTTTATCCTTGCACCGCTGCGTACCTTTAGGCAGATGTTGGCTTCCATTGATTGCCACAGATTCCTAATTGTTCTCCACACTCCCGCTCCATATGTATGCGGTACCATTTCTGTGCACCATGGATAGCTTCACCATACTTTGTCACAATAACTTTCTTCCATAGAGTCCTATGGAGCTATCCTCTGTGATGTATATCCATAACCATTTCGACAAAAAACACTCATTCAAACGCTGTTTTCTAGTTCACCAGACAATAACCCTTCCCCTCCTTATTCCCTTGCCACAGAAACTTCCTCCTAATTTTATCTAGCTTTTTCACCACCTTTGCTCGGATTGTGAAAAGGGACATCACATAAGTGGGCAGTGAGTCAAGATTAGTAACTTCAAACAAAATTCATTAGGGATAGAGTTTGTTCGTTTCACAGCCACACAAACAAGATACTGAAGTGTTTCACCTAAAATAAAATGATTTCTGTTACAAAAATCACACTCCAAAATATGTATATGAATCAATTCTGTGTCAAAGTTGATGGTAAAAAGTATAGGTAGCATTAAATTTGATGGTCGTGCTTCCAAGTATGTGGAAAAACATGGGTTTGGGGTGGGAGCCAAATGGCAGAGAAAGTTTCTCTGTCGGTTTCTGAAAGCATTAGATACCTGTCTTAGGTTGGTCAACAAAGAATATTCATCCTCATTATATTGAATTTTCATTTAGAATTTTGTCCCTCCTAATTTAGATATTTATTTTCTCAGAGAGAACTTGAGAATAAAGTACCCTACTCTTAGTTTCAAAAAAATAAATAAATAAAGGATCCTACTCTTGATAATAAAATTAAAACATACTTCTTGTCCTTGAGTATATATTTATGTAAAAATAAGATCAAAGATGCACAACGTTTACCTTTGTTATGGTGTACGTAAATGATGTATTTAGAGCTTTGTAATTATTTACATGCTAAATTTAGTATGAGAGGGTGGTTAATTTTTCTAATTGTAAGAAAAAAGAACTATGTATATACTTGATTTGTTTTCAGGTGAGCCTGTGAGGTAAGATAGTTTTTATTTTTGTTCTTCTAATTGATGGATGAATTGTTTGAGGTTGAGGAGCTAGTAGTTGATTGGGGTTTTTGTCCTCTATTGTCTTCTACTTGACTCCCACCAAGAAAAAAACTTTTGGTGCTTAAAGACAGAAGAAGCGCCAATGCCAAATTAATAGCAGTCTATTTTAAGTGTTAGTCAACTTCACTTAGCTGCAAATTGAAAAGAAAGATAACACTAATTCTCAAGGAAGATGATGAGACTTTTCTATCAAATTTTAAAATTTTATATTTATATTATTTTATCTTTTAGTATATGAAAACACTCCCAACGTTTAAATGACCGTTTTATGTTCAGTTAGCCCGCTGTCATGTATTCGAACCCTGCTGCAGACTAAAGCCTGTTACTTAAGTGAAGAAGGGTACAAGCACTGGCCTATCGAGTTTTGCACCGTCCTCTGCTGACCCTGGAGGATTTCACGGTTATTTTAAAAACAAGCAAGAGAAGAAGGAGCATTTTATGCTAAAGTTTTGAATCAATGAAATATATTGTTTATATTGTTCAATATCTTTGGATCAATTAAGGCTGAATAAATTGTTTATCAATTTGTATTTTACTCGTGTCATGTCACTCTACTTTCAAAGTTTGTATCCTCCATAATGAGTTAATACTGAAAAAAGATGAATTGCTTTAACACCAAGAAAGAACCAT</genome_strand>
        <mrna_strand>GGAAAAGGATAAGGGCTGAAGATGTAATATGTAAGCTCAAGGACGATGGCGATTTCGATAAACTTCGCCTCAAAATTGTTCGCCGAATGAAAGAAAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCCCGCTGTCATGTATTCGAACCCTGCTGCAGACTAAAGCCTGTTACTTAAGTGAAGAAGGGTACAAGCACTGGCCTATCGAGTTTTGCACCGTCCTCTGCTGACCCTGGAGGATTTCACGGTTATTTTAAAAACAAGCAAGAGAAGAAGGAGCATTTTATGCTAAAGTTTTGAATCAATGAAATATATTGTTTATATTGTTCAATATCTTTGGATCAATTAAGGCTGAATAAATTGTTTATCAATTTGTATTTTACTCGTGTCATGTCACTCTACTTTCAAAGTTTGTATCCTCCATAATGAGTTAATACTGAAAAAAGATGAATTGCTTTAACACCAAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548124" ref_strand="+" ref_description="SGN-E548124 [TUS-58-E22]">
      <seq>ggaaaaggataagggctgaagatgtaatatgtaagctcaaggacgatggcgatttcgataaacttcgcctcaaaattgttcgccgaatgaaagaaaatttagcccgctgtcatgtattcgaaccctgctgcagactaaagcctgttacttaagtgaagaagggtacaagcactggcctatcgagttttgcaccgtcctctgctgaccctggaggatttcacggttattttaaaaacaagcaagagaagaaggagcattttatgctaaagttttgaatcaatgaaatatattgtttatattgttcaatatctttggatcaattaaggctgaataaattgtttatcaatttgtattttactcgtgtcatgtcactctactttcaaagtttgtatcctccataatgagttaatactgaaaaaagatgaattgctttaacaccaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="47969" stop="52107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48269" g_stop="48366" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48367" i_stop="51457" i_length="3091">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51458" g_stop="51811" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="452" r_length="354" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E548124" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48269" e_stop="48366"/>
          <exon e_start="51458" e_stop="51811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGGATAAGGGCTGAAGATGTAATATGTAAGCTCAAGGACGATGGCGATTTCGATAAACTTCGCCTCAAAATTGTTCGCCGAATGAAAGAAAATGTCAGTATTTGCTTGTTCTTCTTTGGTTTTTGTTGTTTAGAGTTCTTCATTGGGCTTAAACTGCTAAAGAGTATTTTTTTTAATCTTCGGTTTCTATATTGTTTTTATCTGTTTTTACATCAATTTACTGCTAAATCCTGAGTTGGGTTTTGTTCCATTGAAAGTGTATGTGATTGGTATTGGAGATTCGACGTTTATTATTGGATTTAAGTTATATACACAGGTAGTGATTGTTAGAGTAAAGGTTAATAGGTATTGGAGTGTTTTTTTTTCCCTTCTAGTAGTGTTATTATTGTTACTCTCGTGTATCTTATTCCTGGATTTTATTATTACTAGTTGTTCACTTGGTTTCAGTTATGTAGTGCTTGTTGTTGATAAAGCTCTCTTCTTTTTACAAAATGGCTTATTTGCTACGATTTGATATGCTTTACTTGAGCCGAGGGCCTTCTAGAAACAACCTCTCTGTGCATGCACATCACTTGTGAGAATGGGTATGTTGTTGTTTACACTGGGCGTGAGGTGAGTCGAGGCGTGTAGTTTTTTTGGGCTGGGTGCCTTATATATAGAGAAAAATGAGGCAAGGGATGTAGTTTTTCTAGTCCGGGCGCTTTCTATAGAGGAAAAAAGGTGTGTATAGGTAGGCTCAAGCTAGATAATATTTATGAGCAGAATGAGAAGACTATGATACTTGGCATGTAGTTTTTCTGGTGTGGCTGTCTACTATTGAGAAAAAAGAGGTGTTCAAAGGTACACATGAGCTAAGATTCTGCTTGGGTGGGAGATGATATAAAATCTCTGTATGCCCTGAACTTAAAACAAAAGCATTAGTTAGTAGTAACGACTCATTCAAGAAATGGATTAGTTTTTCTAAACTGTTAAGTTTGTATTCTTCAGCATTGAGGATAAGCTGACCACCTTCAAAAGAATTAGAGATTCCCTATCAGATCTATAATCTGTTTAATATCCTTTATACATGATTGTTTACACCAAACAAGTAAAGATACTATAAAATTCCATTTAACCTTGTGAATTGGACCCATCTGTAAAACATCTTGTATTTCTTCCCTCCATACTACCCACCATATACATGAAGGGATCAGTCTGCACTCCCCCTCCCCCTCCTTTCTTATCCAACAACTAAGAAGGGTCTGATGTATGCTCAGGCATGGTCCAGCTCTTCCCAGTGATGTTGAGAAACAAAATTCCACAACTGAGCAGTGTACTTACAAATGCAAAAGAATGTGTTTGTTTGTCTCCTCAGTCTCCATACATAGAAAACACCTAGGAACAAGTTGTGTTCCCTTCCTCTGTAGCACTTCTTGAGTTAGGCAGGCCCATTTTATAACCAACCAGATGAAGCACTTTACTTTTGTGGGTATGTCGCTTTTCCAGATGATGCATTGGTCATATACTTTAGTCACCAGAAGACCCCTTGTGAAAGCACTCTTTACATAGAAAATCCCATTTCTATTGTGAATGAGAAGAGCTCTATTCTGTATTAATGATACTTGCACTATTTTCCCAATAACAGGGCTATCTCCTATATCTCCCAATCATTTAAAAGCTTCTAAAAGGGATGTCCCACCCTTGCGTTGACCTAGACTTGGACTGTCATCTCCGGATTTACACAAATAAGAAATGGATCAGGGATGCCTAGTAAAGAGGATTTTGTTCAATCTTCTTATCTCTCCAAAATTTTATCCTTGCACCGCTGCGTACCTTTAGGCAGATGTTGGCTTCCATTGATTGCCACAGATTCCTAATTGTTCTCCACACTCCCGCTCCATATGTATGCGGTACCATTTCTGTGCACCATGGATAGCTTCACCATACTTTGTCACAATAACTTTCTTCCATAGAGTCCTATGGAGCTATCCTCTGTGATGTATATCCATAACCATTTCGACAAAAAACACTCATTCAAACGCTGTTTTCTAGTTCACCAGACAATAACCCTTCCCCTCCTTATTCCCTTGCCACAGAAACTTCCTCCTAATTTTATCTAGCTTTTTCACCACCTTTGCTCGGATTGTGAAAAGGGACATCACATAAGTGGGCAGTGAGTCAAGATTAGTAACTTCAAACAAAATTCATTAGGGATAGAGTTTGTTCGTTTCACAGCCACACAAACAAGATACTGAAGTGTTTCACCTAAAATAAAATGATTTCTGTTACAAAAATCACACTCCAAAATATGTATATGAATCAATTCTGTGTCAAAGTTGATGGTAAAAAGTATAGGTAGCATTAAATTTGATGGTCGTGCTTCCAAGTATGTGGAAAAACATGGGTTTGGGGTGGGAGCCAAATGGCAGAGAAAGTTTCTCTGTCGGTTTCTGAAAGCATTAGATACCTGTCTTAGGTTGGTCAACAAAGAATATTCATCCTCATTATATTGAATTTTCATTTAGAATTTTGTCCCTCCTAATTTAGATATTTATTTTCTCAGAGAGAACTTGAGAATAAAGTACCCTACTCTTAGTTTCAAAAAAATAAATAAATAAAGGATCCTACTCTTGATAATAAAATTAAAACATACTTCTTGTCCTTGAGTATATATTTATGTAAAAATAAGATCAAAGATGCACAACGTTTACCTTTGTTATGGTGTACGTAAATGATGTATTTAGAGCTTTGTAATTATTTACATGCTAAATTTAGTATGAGAGGGTGGTTAATTTTTCTAATTGTAAGAAAAAAGAACTATGTATATACTTGATTTGTTTTCAGGTGAGCCTGTGAGGTAAGATAGTTTTTATTTTTGTTCTTCTAATTGATGGATGAATTGTTTGAGGTTGAGGAGCTAGTAGTTGATTGGGGTTTTTGTCCTCTATTGTCTTCTACTTGACTCCCACCAAGAAAAAAACTTTTGGTGCTTAAAGACAGAAGAAGCGCCAATGCCAAATTAATAGCAGTCTATTTTAAGTGTTAGTCAACTTCACTTAGCTGCAAATTGAAAAGAAAGATAACACTAATTCTCAAGGAAGATGATGAGACTTTTCTATCAAATTTTAAAATTTTATATTTATATTATTTTATCTTTTAGTATATGAAAACACTCCCAACGTTTAAATGACCGTTTTATGTTCAGTTAGCCCGCTGTCATGTATTCGAACCCTGCTGCAGACTAAAGCCTGTTACTTAAGTGAAGAAGGGTACAAGCACTGGCCTATCGAGTTTTGCACCGTCCTCTGCTGACCCTGGAGGATTTCACGGTTATTTTAAAAACAAGCAAGAGAAGAAGGAGCATTTTATGCTAAAGTTTTGAATCAATGAAATATATTGTTTATATTGTTCAATATCTTTGGATCAATTAAGGCTGAATAAATTGTTTATCAATTTGTATTTTACTCGTGTCATGTCACTCTACTTTCAAAGTTTGTATCCTCCATAATGAGTTAATACTGAAAAAAGATGAATTGCTTTAACACCAAGAAAGAACCAT</genome_strand>
        <mrna_strand>GGAAAAGGATAAGGGCTGAAGATGTAATATGTAAGCTCAAGGACGATGGCGATTTCGATAAACTTCGCCTCAAAATTGTTCGCCGAATGAAAGAAAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCCCGCTGTCATGTATTCGAACCCTGCTGCAGACTAAAGCCTGTTACTTAAGTGAAGAAGGGTACAAGCACTGGCCTATCGAGTTTTGCACCGTCCTCTGCTGACCCTGGAGGATTTCACGGTTATTTTAAAAACAAGCAAGAGAAGAAGGAGCATTTTATGCTAAAGTTTTGAATCAATGAAATATATTGTTTATATTGTTCAATATCTTTGGATCAATTAAGGCTGAATAAATTGTTTATCAATTTGTATTTTACTCGTGTCATGTCACTCTACTTTCAAAGTTTGTATCCTCCATAATGAGTTAATACTGAAAAAAGATGAATTGCTTTAACACCAAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278923" ref_strand="+" ref_description="SGN-E278923 [cLER-2-C10]">
      <seq>gaaaaggataagggctgaagatgtaatatgtaagctcaaggacgatggcgatttcgataaacttcgcctcaaaattgttcgccgaatgaaagaaaatttagcccgctgtcatgtattcgaaccctgctgcagactaaagcctgttacttaagtgaagaagggtacaagcactggcctatcgagttttgcaccgtcctctgctgaccctggaggatttcacggttattttaaaaacaagcaagagaagaaggagcattttatgctaaagttttgaatcaatgaaatatattgtttatattgttcaatatctttggatcaattaaggctgaataaattgtttatcaatttgtattttactcgtgtcatgtcactctactttcaaagtttgtatcctccataatgagttaatactgaaaaaagatgaattgctttaacaccaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="47970" stop="52107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48270" g_stop="48366" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48367" i_stop="51457" i_length="3091">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51458" g_stop="51811" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="451" r_length="354" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E278923" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48270" e_stop="48366"/>
          <exon e_start="51458" e_stop="51811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGGATAAGGGCTGAAGATGTAATATGTAAGCTCAAGGACGATGGCGATTTCGATAAACTTCGCCTCAAAATTGTTCGCCGAATGAAAGAAAATGTCAGTATTTGCTTGTTCTTCTTTGGTTTTTGTTGTTTAGAGTTCTTCATTGGGCTTAAACTGCTAAAGAGTATTTTTTTTAATCTTCGGTTTCTATATTGTTTTTATCTGTTTTTACATCAATTTACTGCTAAATCCTGAGTTGGGTTTTGTTCCATTGAAAGTGTATGTGATTGGTATTGGAGATTCGACGTTTATTATTGGATTTAAGTTATATACACAGGTAGTGATTGTTAGAGTAAAGGTTAATAGGTATTGGAGTGTTTTTTTTTCCCTTCTAGTAGTGTTATTATTGTTACTCTCGTGTATCTTATTCCTGGATTTTATTATTACTAGTTGTTCACTTGGTTTCAGTTATGTAGTGCTTGTTGTTGATAAAGCTCTCTTCTTTTTACAAAATGGCTTATTTGCTACGATTTGATATGCTTTACTTGAGCCGAGGGCCTTCTAGAAACAACCTCTCTGTGCATGCACATCACTTGTGAGAATGGGTATGTTGTTGTTTACACTGGGCGTGAGGTGAGTCGAGGCGTGTAGTTTTTTTGGGCTGGGTGCCTTATATATAGAGAAAAATGAGGCAAGGGATGTAGTTTTTCTAGTCCGGGCGCTTTCTATAGAGGAAAAAAGGTGTGTATAGGTAGGCTCAAGCTAGATAATATTTATGAGCAGAATGAGAAGACTATGATACTTGGCATGTAGTTTTTCTGGTGTGGCTGTCTACTATTGAGAAAAAAGAGGTGTTCAAAGGTACACATGAGCTAAGATTCTGCTTGGGTGGGAGATGATATAAAATCTCTGTATGCCCTGAACTTAAAACAAAAGCATTAGTTAGTAGTAACGACTCATTCAAGAAATGGATTAGTTTTTCTAAACTGTTAAGTTTGTATTCTTCAGCATTGAGGATAAGCTGACCACCTTCAAAAGAATTAGAGATTCCCTATCAGATCTATAATCTGTTTAATATCCTTTATACATGATTGTTTACACCAAACAAGTAAAGATACTATAAAATTCCATTTAACCTTGTGAATTGGACCCATCTGTAAAACATCTTGTATTTCTTCCCTCCATACTACCCACCATATACATGAAGGGATCAGTCTGCACTCCCCCTCCCCCTCCTTTCTTATCCAACAACTAAGAAGGGTCTGATGTATGCTCAGGCATGGTCCAGCTCTTCCCAGTGATGTTGAGAAACAAAATTCCACAACTGAGCAGTGTACTTACAAATGCAAAAGAATGTGTTTGTTTGTCTCCTCAGTCTCCATACATAGAAAACACCTAGGAACAAGTTGTGTTCCCTTCCTCTGTAGCACTTCTTGAGTTAGGCAGGCCCATTTTATAACCAACCAGATGAAGCACTTTACTTTTGTGGGTATGTCGCTTTTCCAGATGATGCATTGGTCATATACTTTAGTCACCAGAAGACCCCTTGTGAAAGCACTCTTTACATAGAAAATCCCATTTCTATTGTGAATGAGAAGAGCTCTATTCTGTATTAATGATACTTGCACTATTTTCCCAATAACAGGGCTATCTCCTATATCTCCCAATCATTTAAAAGCTTCTAAAAGGGATGTCCCACCCTTGCGTTGACCTAGACTTGGACTGTCATCTCCGGATTTACACAAATAAGAAATGGATCAGGGATGCCTAGTAAAGAGGATTTTGTTCAATCTTCTTATCTCTCCAAAATTTTATCCTTGCACCGCTGCGTACCTTTAGGCAGATGTTGGCTTCCATTGATTGCCACAGATTCCTAATTGTTCTCCACACTCCCGCTCCATATGTATGCGGTACCATTTCTGTGCACCATGGATAGCTTCACCATACTTTGTCACAATAACTTTCTTCCATAGAGTCCTATGGAGCTATCCTCTGTGATGTATATCCATAACCATTTCGACAAAAAACACTCATTCAAACGCTGTTTTCTAGTTCACCAGACAATAACCCTTCCCCTCCTTATTCCCTTGCCACAGAAACTTCCTCCTAATTTTATCTAGCTTTTTCACCACCTTTGCTCGGATTGTGAAAAGGGACATCACATAAGTGGGCAGTGAGTCAAGATTAGTAACTTCAAACAAAATTCATTAGGGATAGAGTTTGTTCGTTTCACAGCCACACAAACAAGATACTGAAGTGTTTCACCTAAAATAAAATGATTTCTGTTACAAAAATCACACTCCAAAATATGTATATGAATCAATTCTGTGTCAAAGTTGATGGTAAAAAGTATAGGTAGCATTAAATTTGATGGTCGTGCTTCCAAGTATGTGGAAAAACATGGGTTTGGGGTGGGAGCCAAATGGCAGAGAAAGTTTCTCTGTCGGTTTCTGAAAGCATTAGATACCTGTCTTAGGTTGGTCAACAAAGAATATTCATCCTCATTATATTGAATTTTCATTTAGAATTTTGTCCCTCCTAATTTAGATATTTATTTTCTCAGAGAGAACTTGAGAATAAAGTACCCTACTCTTAGTTTCAAAAAAATAAATAAATAAAGGATCCTACTCTTGATAATAAAATTAAAACATACTTCTTGTCCTTGAGTATATATTTATGTAAAAATAAGATCAAAGATGCACAACGTTTACCTTTGTTATGGTGTACGTAAATGATGTATTTAGAGCTTTGTAATTATTTACATGCTAAATTTAGTATGAGAGGGTGGTTAATTTTTCTAATTGTAAGAAAAAAGAACTATGTATATACTTGATTTGTTTTCAGGTGAGCCTGTGAGGTAAGATAGTTTTTATTTTTGTTCTTCTAATTGATGGATGAATTGTTTGAGGTTGAGGAGCTAGTAGTTGATTGGGGTTTTTGTCCTCTATTGTCTTCTACTTGACTCCCACCAAGAAAAAAACTTTTGGTGCTTAAAGACAGAAGAAGCGCCAATGCCAAATTAATAGCAGTCTATTTTAAGTGTTAGTCAACTTCACTTAGCTGCAAATTGAAAAGAAAGATAACACTAATTCTCAAGGAAGATGATGAGACTTTTCTATCAAATTTTAAAATTTTATATTTATATTATTTTATCTTTTAGTATATGAAAACACTCCCAACGTTTAAATGACCGTTTTATGTTCAGTTAGCCCGCTGTCATGTATTCGAACCCTGCTGCAGACTAAAGCCTGTTACTTAAGTGAAGAAGGGTACAAGCACTGGCCTATCGAGTTTTGCACCGTCCTCTGCTGACCCTGGAGGATTTCACGGTTATTTTAAAAACAAGCAAGAGAAGAAGGAGCATTTTATGCTAAAGTTTTGAATCAATGAAATATATTGTTTATATTGTTCAATATCTTTGGATCAATTAAGGCTGAATAAATTGTTTATCAATTTGTATTTTACTCGTGTCATGTCACTCTACTTTCAAAGTTTGTATCCTCCATAATGAGTTAATACTGAAAAAAGATGAATTGCTTTAACACCAAGAAAGAACCAT</genome_strand>
        <mrna_strand>GAAAAGGATAAGGGCTGAAGATGTAATATGTAAGCTCAAGGACGATGGCGATTTCGATAAACTTCGCCTCAAAATTGTTCGCCGAATGAAAGAAAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCCCGCTGTCATGTATTCGAACCCTGCTGCAGACTAAAGCCTGTTACTTAAGTGAAGAAGGGTACAAGCACTGGCCTATCGAGTTTTGCACCGTCCTCTGCTGACCCTGGAGGATTTCACGGTTATTTTAAAAACAAGCAAGAGAAGAAGGAGCATTTTATGCTAAAGTTTTGAATCAATGAAATATATTGTTTATATTGTTCAATATCTTTGGATCAATTAAGGCTGAATAAATTGTTTATCAATTTGTATTTTACTCGTGTCATGTCACTCTACTTTCAAAGTTTGTATCCTCCATAATGAGTTAATACTGAAAAAAGATGAATTGCTTTAACACCAAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415307" ref_strand="+" ref_description="SGN-E415307 [STM-21-I17]">
      <seq>ttttttttttttttttttttttttgagaaaaaaaatccgacttgaacaggttaggaagaaatattgcggttaacatctaaagaaccaacaaaattaacttagtttagactacatcttacaacaagacatcttgtcatcagcaatgttcatatttgaagcctctgagttttgatagtactaatctgtaatccaagatcatgcacaagcgacatagttaagacttctaacctcgggaaattgaagaaagagaggtcatgagctgctagttggcgcagtgaaagtaaagtactctctgcaagtacaaacacaagcttcttgaacttgatacgacaatgaccaaccaaatatggctaacctttcccaaaaatataaacagaaatatatgaacttaataagccatcagccaaatcctggaggcacttcaggatcttcatcattaacatcatctggattcttctcttttgtgcctatagcaaagccaggtggcgcacccacatccacactgtcgggtaccaaagggtcaagtgagcagttgttctctgactgggnatatgtttcttttgcttttccatcagaaggaacaggaattcccgacacttctttcggtgattccttatggtcacttttgccgttctgatttgaacttaatcgggcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="-" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="65675" stop="53880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56722" g_stop="56700" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.739"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56699" i_stop="54818" i_length="1882">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54817" g_stop="54180" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="658" r_length="635" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="-" ref_id="SGN-E415307" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56722" e_stop="56700"/>
          <exon e_start="54817" e_stop="54180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTAATATTTTTTATTTTTTCATAAAGTTATAATAATAGATAAAGTTATTTCATTGGATTATTAAGTGTTCATTTGTGGTGAAATGGTTGAAATCTTATCACCCTTAAGTCTTAACTAGAGGCCTCGGATTCACACCCTTAAAAATGAACAAAATCTTATTGGGATCAAACCGCTCAATTTTATGTTTCTTGATACTTTTGTCAAGTGTCTAGCTTTTTTCCTATAACTATGATGCCAGTCTTTACCTTATTGACCTCTAGAACACGCACTTGGATGAAATTTATTATGTAAAAATAAAAATTAAAATTAAAAAAAAACTTAATTTCATAACAATTTGGTTTAATCTAATCTGAAAATTCAACTTTTTGAGATTTGAGTAAATCTAGTTTCCATATGAGAGACTCTATTAAGTGAGTCATTTTCAATAACTAGAATGAATGTTTTAATCAAACTGCCAAAACTAGAAAATTGATTCAACTAATTGCAGTAACATAACTGTCCATTCAATAACATAAAAAAAATGCATTTGCAACTGAATAATATTACAGAAGTGTTTCGATAAACAAATCAAAATTTCAAATCCTATTACAAGAGTGTTTAGGCAAACAAATCTAAATTCTGAATCATATTACAAGAGTCTTTAGGCAAACAAATCTAAATTCTGAATCCAAAAGAGACATGCTTGGAACTTAATAAAACCAATAAATAACACTTCTTGCACCTGAAGTTAGTGTGTGCTGCATACCTGCATTATCCATAGACTTGTCAACAAAATTCCATCATCTCATGTAGCATGCACAAACAACATAAGTACAGATCAAAAAATTCCATTCAGAAGAGAATATATCTTGTCGATATATTTAAACAACATCTCAGTCCCAAACAAGTCAAGGTCGAGTATATGAATCCTCACTACTTCTTTCAAGCTCAACTTATGCCATAAAATTAGAAGTGGTGTGTGTGTGAGAGAAATATAAAATTAGAAAGCCTCTAACAAGTCTAAGACTTATTTCCAACTAGTAGAATCTTGACGATATAATTAACGTAAATTTATCATCGAACCAGATGTCCTAAGTTTAAATTTAACCACCAACCTTCATCAAGAACAATTCCCATGCGCTTGGATCATTAATAAAAAGTTGGTTGGCATGAGAGAAGCATATTGAAAATATAATTAATTAGATATGTTCTCTCTAACTACTCAAGGTGGCCACATAACTTAACAATTTAGTTTTACAAATTCATATCATAAATATGAATAATTGAGAATTTCTTACTCCCTCCGTATCAATTTATGTGGGGCGGTGTTTGATGAGGTACAAAGTTTAAGGAAGAGAGAGATATTTGAAACTTTTGGTTTAAGTAAATTATAGATATTTGTGTGGCTATACATCATCTCATTAAGGATAAACGGTAAAGTTTAAATTTAAATTGTTTCTAAATAAAGAAGTACAGCATTCTTTTTTTGACTGACTAAAAAGTAAAAGGTGACACATAAATTGAGACAAAAGGAGTAGTTTTTTTCTCTAGCATAATTCCCCATAAGAGGCAAGACACCTCACCAGGGCATAACGTTTCATCTTTGTAACCAAGAGAAAAAAAATAAATTGCTTAGAAAATGATGTAAAGGCATTTACAAAGAATACCTTCTTGCCAAATGGTATGACCAACTAATTTTCCTTTGTCCAATCCACAGCATCAACTCCTAAAAATTTAGGAAAAACAAACCCATTCATCCTACTTAGCAGTTCCAGCTCCGTATCAAGGTCACGATTGATATCATCACTAGCATCAAGATTGTCACTATCAGCATTGTCAATCTCATCAATAAGAAAACCTTTAGGCTTGTTATCTAGGAACTAGTTCAGCTAAAGAAAAACATTTAAAAGACAAAGCAGAAGGGAGAAAAAAAATCCAACTTGAGCAGGTTAGGAAGAAATATTGCGGTTAACATCTAAAGAACCAACAAAATTAACTTAGTTTAGACTACATCTTACAACAAGACATCATGTCATCTCCAATGTTCATATTTGAAGACTATGAGTTTTGATAGTACTAATCTGTTATCCAAGATCATGCACAAGCGACATAGTTAAGGCTTCTAACCTTGGGAAATTGAAGAAAGAGAGGTCATGAGCTGCTAGTCGGTGCAGTGAAAGTTAAGTACTCTCTGCAAGTACCAACAAAAGCTTCTTGAACTTGATACAATAATGACCAACCAAATATGGCTAACCTTTCCCAAAAATATAAACAGAACTATATGAACAACTTAATAAGCCATCAGCCAAATCCTGGAGGCACTTCAGGATCTTCATCATTAACATCATCTGGATTCTTCTCTATTGTGCCTATAGCAAAGCCAGGTGGCGCACCCACATCCACACTTTCGGGTATCAAAGGGTCAAGTGAGCAGTTGTTCTCTGACTGGGTATATGTTTCTTTTGCTTTTCCATCAGAAGGAACAGGAATTCCTGACACTTCTTTCGGTGATACCTTATGGTCACTTTTCCCGTTCCGATTTGAACTTAATTGGGCAAAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGAAAAAAAATCCGACTTGAACAGGTTAGGAAGAAATATTGCGGTTAACATCTAAAGAACCAACAAAATTAACTTAGTTTAGACTACATCTTACAACAAGACATCTTGTCATCAGCAATGTTCATATTTGAAGCCTCTGAGTTTTGATAGTACTAATCTGTAATCCAAGATCATGCACAAGCGACATAGTTAAGACTTCTAACCTCGGGAAATTGAAGAAAGAGAGGTCATGAGCTGCTAGTTGGCGCAGTGAAAGTAAAGTACTCTCTGCAAGTACAAACACAAGCTTCTTGAACTTGATACGACAATGACCAACCAAATATGGCTAACCTTTCCCAAAAATATAAACAGAAATATATG---AACTTAATAAGCCATCAGCCAAATCCTGGAGGCACTTCAGGATCTTCATCATTAACATCATCTGGATTCTTCTCTTTTGTGCCTATAGCAAAGCCAGGTGGCGCACCCACATCCACACTGTCGGGTACCAAAGGGTCAAGTGAGCAGTTGTTCTCTGACTGGGNATATGTTTCTTTTGCTTTTCCATCAGAAGGAACAGGAATTCCCGACACTTCTTTCGGTGATTCCTTATGGTCACTTTTGCCGTTCTGATTTGAACTTAATCGGGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E607941" ref_strand="+" ref_description="SGN-E607941 [23918]">
      <seq>ttgctgatgacaagatgtcttgtgtaagatgtagtctaaactaagttaattttgttggttctttagatgttaaccgcaatatttcttcctaacctgttcaagtcggattttttttctcccttgtgctttgtcttttaaatgtttttctttagctgaacaagttcctagataacaagcctaaaggttttcttattgatgagattgatattgatgatagtgacaatcttgatgctagtgatgatatcaatcgtgaccttgatacggagctggaactgctaactaggatgaatgggtttgtttttcctaaatttttaggagttgatgctgtgcattggacaaaggaaaattagttggtcataccatatggcaagaaggtatgcaacacactaacttcaggtgcaagaagtgttatttatttgtttaattaagttccaagcatgtttcttttggattcaaaatttagatttgttttacctaaacactctttgtaatacgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="54398" stop="56395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54698" g_stop="55072" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55073" i_stop="55973" i_length="901">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.943" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55974" g_stop="56096" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="497" r_length="123" r_score="0.886"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E607941" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E607941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54698" e_stop="55072"/>
          <exon e_start="55974" e_stop="56096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAGATGACATGATGTCTTGTTGTAAGATGTAGTCTAAACTAAGTTAATTTTGTTGGTTCTTTAGATGTTAACCGCAATATTTCTTCCTAACCTGCTCAAGTTGGATTTTTTTTCTCCCTTCTGCTTTGTCTTTTAAATGTTTTTCTTTAGCTGAACTAGTTCCTAGATAACAAGCCTAAAGGTTTTCTTATTGATGAGATTGACAATGCTGATAGTGACAATCTTGATGCTAGTGATGATATCAATCGTGACCTTGATACGGAGCTGGAACTGCTAAGTAGGATGAATGGGTTTGTTTTTCCTAAATTTTTAGGAGTTGATGCTGTGGATTGGACAAAGGAAAATTAGTTGGTCATACCATTTGGCAAGAAGGTATTCTTTGTAAATGCCTTTACATCATTTTCTAAGCAATTTATTTTTTTTCTCTTGGTTACAAAGATGAAACGTTATGCCCTGGTGAGGTGTCTTGCCTCTTATGGGGAATTATGCTAGAGAAAAAAACTACTCCTTTTGTCTCAATTTATGTGTCACCTTTTACTTTTTAGTCAGTCAAAAAAAGAATGCTGTACTTCTTTATTTAGAAACAATTTAAATTTAAACTTTACCGTTTATCCTTAATGAGATGATGTATAGCCACACAAATATCTATAATTTACTTAAACCAAAAGTTTCAAATATCTCTCTCTTCCTTAAACTTTGTACCTCATCAAACACCGCCCCACATAAATTGATACGGAGGGAGTAAGAAATTCTCAATTATTCATATTTATGATATGAATTTGTAAAACTAAATTGTTAAGTTATGTGGCCACCTTGAGTAGTTAGAGAGAACATATCTAATTAATTATATTTTCAATATGCTTCTCTCATGCCAACCAACTTTTTATTAATGATCCAAGCGCATGGGAATTGTTCTTGATGAAGGTTGGTGGTTAAATTTAAACTTAGGACATCTGGTTCGATGATAAATTTACGTTAATTATATCGTCAAGATTCTACTAGTTGGAAATAAGTCTTAGACTTGTTAGAGGCTTTCTAATTTTATATTTCTCTCACACACACACCACTTCTAATTTTATGGCATAAGTTGAGCTTGAAAGAAGTAGTGAGGATTCATATACTCGACCTTGACTTGTTTGGGACTGAGATGTTGTTTAAATATATCGACAAGATATATTCTCTTCTGAATGGAATTTTTTGATCTGTACTTATGTTGTTTGTGCATGCTACATGAGATGATGGAATTTTGTTGACAAGTCTATGGATAATGCAGGTATGCAGCACACACTAACTTCAGGTGCAAGAAGTGTTATTTATTGGTTTTATTAAGTTCCAAGCATGTCTCTTTTGGATTCAGAATTTAGATTTG-TTTGCCTAAAGACTC-TTGTAATATGAT</genome_strand>
        <mrna_strand>TTGCTGATGACAAGATGTCTTG-TGTAAGATGTAGTCTAAACTAAGTTAATTTTGTTGGTTCTTTAGATGTTAACCGCAATATTTCTTCCTAACCTGTTCAAGTCGGATTTTTTTTCTCCCTTGTGCTTTGTCTTTTAAATGTTTTTCTTTAGCTGAACAAGTTCCTAGATAACAAGCCTAAAGGTTTTCTTATTGATGAGATTGATATTGATGATAGTGACAATCTTGATGCTAGTGATGATATCAATCGTGACCTTGATACGGAGCTGGAACTGCTAACTAGGATGAATGGGTTTGTTTTTCCTAAATTTTTAGGAGTTGATGCTGTGCATTGGACAAAGGAAAATTAGTTGGTCATACCATATGGCAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCA--ACACACTAACTTCAGGTGCAAGAAGTGTTATTTATTTGTTTAATTAAGTTCCAAGCATGTTTCTTTTGGATTCAAAATTTAGATTTGTTTTACCTAAACACTCTTTGTAATACGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443214" ref_strand="+" ref_description="SGN-E443214 [cSTA-36-B18]">
      <seq>gatgtaacttatgaagacggaatgaaaatcatcgactatatgaattcaacgaagaaacctgttgctcggattacattccaaggaactatactcggtgatcaaaatgctccggttgttgctggattttcttccagagggccaagcatagctagtcgcggaatcttaaagcctgacattatcggtcctggtgtaaacattcttgctgcttggcctacctccatggagaacaacaccaacacaaaatctactttcaacattatttcgggaacctccatgtcttgtcctcacctcagtggcgtagcagcattgctaaaaagcgctcatcccacttggtctcctgcagctattaaatcagcaatcatgacaacagctgatacaaccaatcttgccaacggtcccatattagatgaaacactccttcctgctagcatcttcgcgtttggtgcaggacatgtcaatccagaaagagcaaatgatccaggattaatttatgataccccagtcaaggactatgtaccttatttatgcggtttgaattacacaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="-" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="63258" stop="62112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62958" g_stop="62412" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="-" ref_id="SGN-E443214" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62958" e_stop="62412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTAACTTATGCAGACGGAATGAAAATCATTGAGTATATGAATTCAACAAAGAAACCTGTTGCTCAGATTACATTCCAAGGCACTATACTCGGTGATCAAAATGCTCCGGTTGTTGCTGCATTTTCTTCCAGAGGGCCAAGCATAGCTAGTCGCGGAATCTTAAAGCCTGATATTATCGGTCCTGGTGTAAACATTCTTGCTGCTTGGCCTACCTCCATGGAGAATAACACCAACACAAAATCTACTTTCAACATTATTTCGGGAACTTCCATGTCTTGTCCTCACCTCAGTGGCGTGGCAGCATTGCTAAAAAGCGCTCATCCCACTTGGTCTCCTGCAGCTATCAAATCAGCAATCATGACAACCGCTGATACAACCAATCTTGCCAACGGTCCCATATTAGATGAGACACTTCTTCCTGCTAGCATCTTCGCGGTTGGTGCAGGACATGTCAATCCAGAAAGAGCAAATGATCCAGGATTAATTTATGATACCCCAGTCAAGGACTATGTACCTTATTTATGCGGTTTGAATTACACAAATC</genome_strand>
        <mrna_strand>GATGTAACTTATGAAGACGGAATGAAAATCATCGACTATATGAATTCAACGAAGAAACCTGTTGCTCGGATTACATTCCAAGGAACTATACTCGGTGATCAAAATGCTCCGGTTGTTGCTGGATTTTCTTCCAGAGGGCCAAGCATAGCTAGTCGCGGAATCTTAAAGCCTGACATTATCGGTCCTGGTGTAAACATTCTTGCTGCTTGGCCTACCTCCATGGAGAACAACACCAACACAAAATCTACTTTCAACATTATTTCGGGAACCTCCATGTCTTGTCCTCACCTCAGTGGCGTAGCAGCATTGCTAAAAAGCGCTCATCCCACTTGGTCTCCTGCAGCTATTAAATCAGCAATCATGACAACAGCTGATACAACCAATCTTGCCAACGGTCCCATATTAGATGAAACACTCCTTCCTGCTAGCATCTTCGCGTTTGGTGCAGGACATGTCAATCCAGAAAGAGCAAATGATCCAGGATTAATTTATGATACCCCAGTCAAGGACTATGTACCTTATTTATGCGGTTTGAATTACACAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446648" ref_strand="+" ref_description="SGN-E446648 [cSTA-22-M14]">
      <seq>gatgtaacttatgaagacggaatgaaaatcatcgactatatgaattcaacgaagaaacctgttgctcggattacattccaaggaactatactcggtgatcaaaatgctccggttgttgctggattttcttccagagggccaagcatagctagtcgcggaatcttaaagcctgacattatcggtcctggtgtaaacattcttgctgcttggcctacctccatggagaacaacaccaacacaaaatctactttcaacattatttcgggaacctccatgtcttgtcctcacctcagtggcgtagcagcattgctaaaaagcgctcatcccacttggtctcctgcagctattaaatcagcaatcatgacaacagctgatacaaccaatcttgccaacggtcccatattagatgaaacactccttcctgctagcatcttcgcgtttggtgcaggacatgtcaatccagaaagagcaaatgatccaggattaatttatgataccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="-" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="63258" stop="62160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62958" g_stop="62460" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="-" ref_id="SGN-E446648" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62958" e_stop="62460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTAACTTATGCAGACGGAATGAAAATCATTGAGTATATGAATTCAACAAAGAAACCTGTTGCTCAGATTACATTCCAAGGCACTATACTCGGTGATCAAAATGCTCCGGTTGTTGCTGCATTTTCTTCCAGAGGGCCAAGCATAGCTAGTCGCGGAATCTTAAAGCCTGATATTATCGGTCCTGGTGTAAACATTCTTGCTGCTTGGCCTACCTCCATGGAGAATAACACCAACACAAAATCTACTTTCAACATTATTTCGGGAACTTCCATGTCTTGTCCTCACCTCAGTGGCGTGGCAGCATTGCTAAAAAGCGCTCATCCCACTTGGTCTCCTGCAGCTATCAAATCAGCAATCATGACAACCGCTGATACAACCAATCTTGCCAACGGTCCCATATTAGATGAGACACTTCTTCCTGCTAGCATCTTCGCGGTTGGTGCAGGACATGTCAATCCAGAAAGAGCAAATGATCCAGGATTAATTTATGATACCC</genome_strand>
        <mrna_strand>GATGTAACTTATGAAGACGGAATGAAAATCATCGACTATATGAATTCAACGAAGAAACCTGTTGCTCGGATTACATTCCAAGGAACTATACTCGGTGATCAAAATGCTCCGGTTGTTGCTGGATTTTCTTCCAGAGGGCCAAGCATAGCTAGTCGCGGAATCTTAAAGCCTGACATTATCGGTCCTGGTGTAAACATTCTTGCTGCTTGGCCTACCTCCATGGAGAACAACACCAACACAAAATCTACTTTCAACATTATTTCGGGAACCTCCATGTCTTGTCCTCACCTCAGTGGCGTAGCAGCATTGCTAAAAAGCGCTCATCCCACTTGGTCTCCTGCAGCTATTAAATCAGCAATCATGACAACAGCTGATACAACCAATCTTGCCAACGGTCCCATATTAGATGAAACACTCCTTCCTGCTAGCATCTTCGCGTTTGGTGCAGGACATGTCAATCCAGAAAGAGCAAATGATCCAGGATTAATTTATGATACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459950" ref_strand="+" ref_description="SGN-E459950 [cPRO-29-B1]">
      <seq>gcagatcttattgcggatcaggtacgttgagtgaccgtgctgtttaaggcaaaatagtattgtgtatgatgggaggtgattattcgagaattgctaaaggacaagctgttaaggatgctggaggtgttggcatgattctaataaacagggctgaagatggtttcactacatcagctaccgctcacgtccttccagcaatggatgtaacttatgaagacggaatgaaaatcatcgactatatgaattcaacgaagaaacctgttgctcggattacattccaaggaactatactcggtgatcaaaatgctccggttgttgctggattttcttccagagggccaagcatagctagtcgcggaatcttaaagcctgacattatcggtcctggtgtaaacattcttgctgcttggcctacctccatggagaacaacaccaacacaaaatctactttcaacattatttcgggaacctccatgtcttgtcctcacctcagtggcgtagcagcattgctaaaaagcgctcatcccacttggtctcctgcagctattaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="-" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="63458" stop="62306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63158" g_stop="62606" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="-" ref_id="SGN-E459950" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63158" e_stop="62606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATCTTATTGCGGATCAGGTACGTTGAGTGACCGCGATGTTAAAGGAAAAATAGTGTTGTGTATGATAGGAGGCGATTATTCGAGAATTGAAAAAGGACAAACTGTTGAGGATGCTGGAGGTGTTGGCATGATTCTAATAAACGGGGCTGAAGATGGTTTCACTACCTCAGCTACCGCTCACGTCCTTCCAGCAATGGATGTAACTTATGCAGACGGAATGAAAATCATTGAGTATATGAATTCAACAAAGAAACCTGTTGCTCAGATTACATTCCAAGGCACTATACTCGGTGATCAAAATGCTCCGGTTGTTGCTGCATTTTCTTCCAGAGGGCCAAGCATAGCTAGTCGCGGAATCTTAAAGCCTGATATTATCGGTCCTGGTGTAAACATTCTTGCTGCTTGGCCTACCTCCATGGAGAATAACACCAACACAAAATCTACTTTCAACATTATTTCGGGAACTTCCATGTCTTGTCCTCACCTCAGTGGCGTGGCAGCATTGCTAAAAAGCGCTCATCCCACTTGGTCTCCTGCAGCTATCAAATC</genome_strand>
        <mrna_strand>GCAGATCTTATTGCGGATCAGGTACGTTGAGTGACCGTGCTGTTTAAGGCAAAATAGTATTGTGTATGATGGGAGGTGATTATTCGAGAATTGCTAAAGGACAAGCTGTTAAGGATGCTGGAGGTGTTGGCATGATTCTAATAAACAGGGCTGAAGATGGTTTCACTACATCAGCTACCGCTCACGTCCTTCCAGCAATGGATGTAACTTATGAAGACGGAATGAAAATCATCGACTATATGAATTCAACGAAGAAACCTGTTGCTCGGATTACATTCCAAGGAACTATACTCGGTGATCAAAATGCTCCGGTTGTTGCTGGATTTTCTTCCAGAGGGCCAAGCATAGCTAGTCGCGGAATCTTAAAGCCTGACATTATCGGTCCTGGTGTAAACATTCTTGCTGCTTGGCCTACCTCCATGGAGAACAACACCAACACAAAATCTACTTTCAACATTATTTCGGGAACCTCCATGTCTTGTCCTCACCTCAGTGGCGTAGCAGCATTGCTAAAAAGCGCTCATCCCACTTGGTCTCCTGCAGCTATTAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340856" ref_strand="+" ref_description="SGN-E340856 [cTOF-5-F8]">
      <seq>acctgctgttggtgttgcccctcttgctcacttggctatttataagggcctgtgactcttttggttgcattgtcagtaatgttttaagctgctatggatgcagctattgatgatggcgtggatatcatatccctttcccttggtggatatactagtcccttccacagtgattctattgctctcggtgcatatagcgcaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="-" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="63893" stop="63096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63595" g_stop="63396" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="-" ref_id="SGN-E340856" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>200</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63595" e_stop="63396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGCTGTTGGTGTTGCCCCTCTTGCTCACTTGGCTATTTATAA-GGCCTGTGACTCTTTTGGTTGCATTGTCAGTAATGTTTTA-GCTGCTATGGATGCAGCTATTGATGATGGCGTGGATATCATATCCCTTTCCCTTGGTGGATATACTAGTCCCTTCCACAGTGATTCTATTGCTCTCGGTGCATATAGCGCAACTG</genome_strand>
        <mrna_strand>ACCTGCTGTTGGTGTTGCCCCTCTTGCTCACTTGGCTATTTATAAGGGCCTGTGACTCTTTTGGTTGCATTGTCAGTAATGTTTTAAGCTGCTATGGATGCAGCTATTGATGATGGCGTGGATATCATATCCCTTTCCCTTGGTGGATATACTAGTCCCTTCCACAGTGATTCTATTGCTCTCGGTGCATATAGCGCAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246224" ref_strand="-" ref_description="SGN-E246224 [cLEF-40-E3]">
      <seq>atcggtgcaggacatgtcaatccatcgagagctaatgatccaggactaatctacgacaccgaatttaaggactacctgccttacctctgcggtttgaattacacaaatcgacaggttggaaatctcctgcaacgcaaagtggagtgtaaggaagtgaaacacattcctgaagcacaactaaattatccttcattctccatcgcactcggagaaatttctcagacttatacgagaacagtgactaacgtcggggaagctaaatcatcttacagtgtggaaatagcttccccacccggagtctctgtgattgttaagccctctactctagaattctcccagttggaccagaagttgaaataccaagtgacatttacgaaaagaaataatagcccaaacagtggcattgctcaaggattcttgaaatggagtagtaagaattactcagtaagaagcccaattgcagttgtgctaccgcctacaattggtttctagttttattttcttctcattttaataattggaacaatatataacaagagtggttccaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="-" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="76452" stop="75299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76152" g_stop="75599" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="555" polyA_stop="570"/>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="-" ref_id="SGN-E246224" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246224" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="76152" e_stop="75599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGGTGCAGGACATGTCAATCCATCGAGAGCTAATGATCCAGGACTAATCTACGACACCGAATTTAAGGACTACCTGCCTTACCTCTGCGGTTTGAATTACACAAATCGACAGGTTGGAAATCTCCTGCAACGCAAAGTGGAGTGTAAGGAAGTGAAACACATTCCTGAAGCACAACTAAATTATCCTTCATTCTCCATCGCACTCGGAGAAATTTCTCAGACTTATACGAGAACAGTGACTAACGTCGGGGAAGCTAAATCATCTTACAGTGTGGAAATAGCTTCCCCACCCGGAGTCTCTGTGATTGTTAAGCCCTCTACTCTAGAATTCTCCCAGTTGGACCAGAAGTTGAAATACCAAGTGACATTTACGAAAAGAAATAATAGCCCAAACAGTGGCATTGCTCAAGGATTCTTGAAATGGAGTAGTAAGAATTACTCAGTAAGAAGCCCAATTGCAGTTGTGCTACCGCCTACAATTGGTTTCTAGTTTTATTTTCTTCTCATTTTAATAATTGGAACAATATATAACAAGAGTGGTTCCAAAAGAAA</genome_strand>
        <mrna_strand>ATCGGTGCAGGACATGTCAATCCATCGAGAGCTAATGATCCAGGACTAATCTACGACACCGAATTTAAGGACTACCTGCCTTACCTCTGCGGTTTGAATTACACAAATCGACAGGTTGGAAATCTCCTGCAACGCAAAGTGGAGTGTAAGGAAGTGAAACACATTCCTGAAGCACAACTAAATTATCCTTCATTCTCCATCGCACTCGGAGAAATTTCTCAGACTTATACGAGAACAGTGACTAACGTCGGGGAAGCTAAATCATCTTACAGTGTGGAAATAGCTTCCCCACCCGGAGTCTCTGTGATTGTTAAGCCCTCTACTCTAGAATTCTCCCAGTTGGACCAGAAGTTGAAATACCAAGTGACATTTACGAAAAGAAATAATAGCCCAAACAGTGGCATTGCTCAAGGATTCTTGAAATGGAGTAGTAAGAATTACTCAGTAAGAAGCCCAATTGCAGTTGTGCTACCGCCTACAATTGGTTTCTAGTTTTATTTTCTTCTCATTTTAATAATTGGAACAATATATAACAAGAGTGGTTCCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213039" ref_strand="+" ref_description="SGN-E213039 [cLEC-72-F21]">
      <seq>acagaacgttggcttgtggagggatgacaactatggagaaggtgtgatcattggagtcttctacacaggggttacccctgatcatccttcattcagtgacgaaggaatgcctcctccacctgctaaatggaagggaaagtgtgattcaaatttcactggaaagtgtagcaacaagctcattggtgcaaagacttacccactaaaaagtgagtcaccaaaagatgaggctggacatggcacacacacctcgagcacagctgcaggaagttttgtgaaaggtgccaatgtgtatgggaacgctaaaggcactgcggttgggattgcccctcttgctcacttggccatgtataaggtcagtccattatttggttgccccgatgctgaaattttagctggcatggatgaagctattgatgatggagtagatatcatgtccctttcacttggtggatctagcaggccattctataatgatgtgattgcactcggggcgtacagtgcagcaaaaagaggtattcttgtaagttgctctgcgggtaatggtggtccatcccatagcacttatcaaacgaagctccgtggtttctgacagtaggtgcaagcactattgacagggaacttaaggtcactgttatgctcggaaacaaaaactatttgagggtgaatcagcatttagtcctaaggtccggattcctcattttaccctttgattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="-" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="81169" stop="79854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80869" g_stop="80154" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="714" r_length="714" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="-" ref_id="SGN-E213039" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80869" e_stop="80154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAACGTTGGCTTGTGGAGGGATGACAACTATGGAGAAGGTGTGATCATTGGAGTCTTCTACACAGGGGTTACCCCTGATCATCCTTCATTCAGTGACGAAGGAATGCCTCCTCCACCTGCTAAATGGAAGGGAAAGTGTGATTCAAATTTCACTGGAAAGTGTAGCAACAAGCTCATTGGTGCAAAGACTTACCCACTAAAAAGTGAGTCACCAAAAGATGAGGCTGGACATGGCACACACACCTCGAGCACAGCTGCAGGAAGTTTTGTGAAAGGTGCCAATGTGTATGGGAACGCTAAAGGCACTGCGGTTGGGATTGCCCCTCTTGCTCACTTGGCCATGTATAAGGTCAGTCCATTATTTGGTTGCCCCGATGCTGAAATTTTAGCTGGCATGGATGAAGCTATTGATGATGGAGTAGATATCATGTCCCTTTCACTTGGTGGATCTAGCAGGCCATTCTATAATGATGTGATTGCACTCGGGGCGTACAGTGCAGCAAAAAGAGGTATTCTTGTAAGTTGCTCTGCGGGTAATGGTGGTCCATCCCATAGCACTTATCAAACGAAGCTCCGTGGTTTCTGACAGTAGGTGCAAGCACTATTGACAGGGAACTTAAGGTCACTGTTATGCTCGGAAACCAAAAACTATTTGAGGGTGAATCAGCATTTAGTCCTAAGGTTCCGGATTCCTCATTTTACCCTTTGATTGA</genome_strand>
        <mrna_strand>ACAGAACGTTGGCTTGTGGAGGGATGACAACTATGGAGAAGGTGTGATCATTGGAGTCTTCTACACAGGGGTTACCCCTGATCATCCTTCATTCAGTGACGAAGGAATGCCTCCTCCACCTGCTAAATGGAAGGGAAAGTGTGATTCAAATTTCACTGGAAAGTGTAGCAACAAGCTCATTGGTGCAAAGACTTACCCACTAAAAAGTGAGTCACCAAAAGATGAGGCTGGACATGGCACACACACCTCGAGCACAGCTGCAGGAAGTTTTGTGAAAGGTGCCAATGTGTATGGGAACGCTAAAGGCACTGCGGTTGGGATTGCCCCTCTTGCTCACTTGGCCATGTATAAGGTCAGTCCATTATTTGGTTGCCCCGATGCTGAAATTTTAGCTGGCATGGATGAAGCTATTGATGATGGAGTAGATATCATGTCCCTTTCACTTGGTGGATCTAGCAGGCCATTCTATAATGATGTGATTGCACTCGGGGCGTACAGTGCAGCAAAAAGAGGTATTCTTGTAAGTTGCTCTGCGGGTAATGGTGGTCCATCCCATAGCACTTATCAAACGAAGCTCCGTGGTTTCTGACAGTAGGTGCAAGCACTATTGACAGGGAACTTAAGGTCACTGTTATGCTCGGAAA-CAAAAACTATTTGAGGGTGAATCAGCATTTAGTCCTAAGG-TCCGGATTCCTCATTTTACCCTTTGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378105" ref_strand="-" ref_description="SGN-E378105 [TUS-21-F16]">
      <seq>tttttttttttttttttttttttttttttttttccactataaaaatatatcactacttcttggagtttaatcaaccatcacgagttataattctaatttgattttctgtacacaaaaatcttacaaaatgagtactctaaccactagttgagtcccaaacatattaactaatcgagtttgtcaacttacaaaaggggcttgcactggaaacatgaaataatatcagcggtacactaattgtaatcgcccttctttgatagtcccatctcaaagacttgcctataacaacagacctgaaaattcactgtggacgacataatagctttagtggaaagttcaaaaagaaaaaaaaaagaactcgggaacagatgtaaaaatagcaacagcaccttagaaacacttcctacggacaattgattaaacatggtggcaattgagacgtgaattaaaacatggtaagagcacaaaccaataagcaatgagaaatatagaattatataacatgtgacaatggaagttgcacttatttcctaaaacttgtgatcgttatcctttaaaaaatttagattctctatggaggttaaatataatgctatgtgtttgatgatgagctagcacggcatgattaaaaatgaaaagaagtaacaaaaaagcaaagtgaaataaaaagcttatgagggaaaagaatagcttacatcagttggggagccatttgttttaatcattacatgcattccccatcgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="65291" stop="82953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81352" g_stop="81383" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.719"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81384" i_stop="81617" i_length="234">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81618" g_stop="81996" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="418" r_length="386" r_score="0.847"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81997" i_stop="82323" i_length="327">
            <donor d_prob="0.044" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82324" g_stop="82653" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="747" r_length="329" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E378105" ref_strand="-">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378105" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81352" e_stop="81383"/>
          <exon e_start="81618" e_stop="81996"/>
          <exon e_start="82324" e_stop="82653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATTTTGGTTGTTATTTGAGTTTTTTTTTCAAAAATATTTGCACCTATATAGTTATAATTTTAGTTTAGACTTTATACTGAATATAATTGATATGAGTTGGGGTGAGATAGTTGAGATTTTTCTACCCTTAATTAGAATTTAGGAGCACGAGTCGTAGAATGGGTAAAAAATCATGTTAGGAGCGCCGCTCCTTCAAATGTGCAAATTCGAATGTAGTTGGACTCCAATGTGGATATCAAGCACCGAATGAGGAAACAACATATCCACTATAAAAATATATCAGTACTTCTTGGAGTTTACTCAACCATCGCGAGTTATAATTCTAATTTGATTTTCTGTACTT-AA-GTCTTACAAAATGAGTA--GT-A------GTTGAGTCCCAAACATATTAACTAATCGAGTTTGTCAACTTACAAAAGAGGCTTGCACTGTAGCACTGGAAACATGAAATAGTATCAGCGGTACACTGATTGTAATCGCCCTTCTTTGATAGTCACATCTCAAAGACTTGCCTATAACAACAGACCTGAAAATTCACTGTGGACGACAAAATAGCTTTAGTGGAAAG----ATTTTTTAAAAAAAGGAACTCGGGAACACATGTAAAAATAGCAGCAGCACCTTAGAAACACTTCCTACGGACAATTGATGTACCAGACTTGTCGTACTCGCTCTTCTAAATCCACATCTGATTAAGCACAAAACATGTTTAAGTTAGCAACAACACATGAGTTCAAAATGTAGCTTAAAATTGCAAAAGTGTACGCAAGAGAAGATATTTGAAGACAGTGATTTTCTTACTCGTTGGATTAACACCCTGCAAATGTATATCTGTAGCCCTTACCTTTCAAAACGTAGTTGTCTGGTCGCTATACGAAAGAAAAAAGATGTTTAGCATTTTTGTCTACCTCTTTTACCTATCAAAATTTCTAGTGACATAGGATGGTTGATGATTACAAGAACTAAAAACTTTCGATTAAACATGGTGGCAATTGAGACGTGAATTAAAACACGGCAAGAGCATAAACCAATAAGCAATGAGAAATATAGAATTATATAACATGTGACAATGGAAGTTGCACTTATTTCCTAAAAACTTGTGATCGTTATCCTATAAAAAATTTAGATTCTCTATGGAGGTTAAATATAATGCTATGTGTTTGATGATGAGCTAGCACGGCATGATTAAAAATGAAAAGAAGTAACAAAAAAGCAAAGTGAAATAAAAAGCTTATGAGGGAAAAGAATAGCTTACATCAGTTGGGGAGTCATTCGTTTTAATCATTACATGCATTTCCAATCGATCT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT..........................................................................................................................................................................................................................................TCCACTATAAAAATATATCACTACTTCTTGGAGTTTAATCAACCATCACGAGTTATAATTCTAATTTGATTTTCTGTACACAAAAATCTTACAAAATGAGTACTCTAACCACTAGTTGAGTCCCAAACATATTAACTAATCGAGTTTGTCAACTTACAAAAG-GG---G--CT-T-GCACTGGAAACATGAAATAATATCAGCGGTACACTAATTGTAATCGCCCTTCTTTGATAGTCCCATCTCAAAGACTTGCCTATAACAACAGACCTGAAAATTCACTGTGGACGACATAATAGCTTTAGTGGAAAGTTCAAAAAGAAAAAAAAAAGAACTCGGGAACAGATGTAAAAATAGCAACAGCACCTTAGAAACACTTCCTACGGACAATTGAT.......................................................................................................................................................................................................................................................................................................................................TAAACATGGTGGCAATTGAGACGTGAATTAAAACATGGTAAGAGCACAAACCAATAAGCAATGAGAAATATAGAATTATATAACATGTGACAATGGAAGTTGCACTTATTTCCT-AAAACTTGTGATCGTTATCCTTTAAAAAATTTAGATTCTCTATGGAGGTTAAATATAATGCTATGTGTTTGATGATGAGCTAGCACGGCATGATTAAAAATGAAAAGAAGTAACAAAAAAGCAAAGTGAAATAAAAAGCTTATGAGGGAAAAGAATAGCTTACATCAGTTGGGGAGCCATTTGTTTTAATCATTACATGCATTCCCCATCGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747665" ref_strand="+" ref_description="SGN-E747665 [GI|2318004]">
      <seq>tatggcagattgtcctccaaaaagccttttaactgtcttgagaagcttgaatttgaagatatgacggggtggaagcaatggcacgcactaggaattggagagttccctacacttgagaacctttccattaaaaattgccctgagctcagtttgaagatacccatccaattttcaagtttaaaaaggttacaagttagaggttgtccagttgtttttgatgatgctcaactgtttagatcccaacttgaagcaatgaagcagattgaagcattatatatacgtgattgtaactctattacctcctttccttttagcatactgccaactaccttgaagacaatagagatatctggttgcccaaaattgaaattcgaggcgccagttggtgagatgtttgtggagtatttgagtgtgattgattgtggttgtgtagatgataatatcattagagtttctcccagcagcgtgtaaattgagtattatgagttgccacaactttactaggtttttgattcctactgcaactgaaactctcactatttcgaattgtgagaatgttgaaaaactatcggtggcatgtggaggagcggcccagatgacgttactgcatattttgaagtgtaagaagctcaagtgtctgccagaacgtatgcaggaactcctcccatctctcaaggatttgtatctttccaattgtccagaaatagaaggagaattgcccttcaatttacataaactccgtatcagtgattgcaagaaactggtgaatggccgaaaggagtggcatttacagagactcacagagttagtgatccatcatgatgggagtgacgaagatattgaacattgggagttgccttgttctattacagaacttgagggtatacaatatgataacattaagcagccaacatctcaaaagcctcacctctcttcaatgtctaagtattggtggtaatttatctcagattggccgtctttcctccttttctcacctcacttcgcttcaaactctacaaatcaggaatttcggtaatcccaatcacttgctgaatcagcactgccatcctccctctctcacctgaccatctcccgttgcccgaatctccaatcacttgctgaatcagcactgccctcctccctctctcacctgaacatctatgattgcccgaatctccaattactacctgaatcagcactgccctcctccctctctcacctggacatctcccattgtcctaatctccaatcactacctgaatcagcactgctctcctccctctctcacctggacatctcccactgtcctaatctccaatcacttgctgaatcagcactgccctcctccctctctcacctgaccatctcccattgccctaatctccattcactttcagaaaaagggatgccctcttccctctctaaactatctatttccaaatgttcattgctcacaccactactagaatttaacaagggggaatactggacaaatattgctcatatctccaccatacagatcgattggaaatgcatgtaatgattaaacgaatgactccccaactgatatgtggatttagaagagcgagtccgacaagtctggtacatcaattgtccgtaggaagtgtttctaagtgaattttcaggtctgttgttataggcaagtctttgagatgtgactatcaaagaagggcgattacaatcagtgtaccgctgatactatttcatgtttccagtgctacagtgcaagcctcttttgtaagttgcaaactcgattagttaatatgtttgggactcaactactactcattttgtaagacttaagtacagaaaatcaaattagaattataactcgcgatggttgagtaaactccaagaagctcgtgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="-" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="84470" stop="81336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84170" g_stop="82602" g_length="1569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1568" r_length="1568" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82601" i_stop="82035" i_length="567">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82034" g_stop="81968" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1569" r_stop="1635" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81967" i_stop="81887" i_length="81">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.253" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81886" g_stop="81642" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1636" r_stop="1879" r_length="244" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="-" ref_id="SGN-E747665" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1881</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84170" e_stop="82602"/>
          <exon e_start="82034" e_stop="81968"/>
          <exon e_start="81886" e_stop="81642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGCAGATTGTCCTCCAAAAAGCCTTTTAACTGTCTTGAGAAGCTTGAATTTGAAGATATGACGGGGTGGAAGCAATGGCACGCACTAGGAATTGGAGAGTTCCCTACACTTGAGAACCTTTCCATTAAAAATTGCCCTGAGCTCAGTTTGAAGATACCCATCCAATTTTCAAGTTTAAAAAGGTTACAAGTTAGAGGTTGTCCAGTTGTTTTTGATGATGCTCAACTGTTTAGATCCCAACTTGAAGCAATGAAGCAGATTGAAGCATTATATATACGTGATTGTAACTCTATTACCTCCTTTCCTTTTAGCATACTGCCAACTACCTTGAAGACAATAGAGATATCTGGTTGCCCAAAATTGAAATTCGAGGCGCCAGTTGGTGAGATGTTTGTGGAGTATTTGAGTGTGATTGATTGTGGTTGTGTAGATGATAATATCATTAGAGTTTCTCCCAGCAGCGTGTAAATTGAGTATTATGAGTTGCCACAACTTTACTAGGTTTTTGATTCCTACTGCAACTGAAACTCTCACTATTTCGAATTGTGAGAATGTTGAAAAACTATCGGTGGCATGTGGAGGAGCGGCCCAGATGACGTTACTGCATATTTTGAAGTGTAAGAAGCTCAAGTGTCTGCCAGAACGTATGCAGGAACTCCTTCCATCTCTCAAGGATTTGTATCTTTCCAATTGTCCAGAAATAGAAGGAGAATTGCCCTTCAATTTACATAAACTCCGTATCAGTGATTGCAAGAAACTGGTGAATGGCCGAAAGGAGTGGCATTTACAGAGACTCACAGAGTTAGTGATCCATCATGATGGGAGTGACGAAGATATTGAACATTGGGAGTTGCCTTGTTCTATTACAGAACTTGA-GGTATACAATATGATAACATTAAGCAGCCAACATCTCAAAAGCCTCACCTCTCTTCAATGTCTAAGTATTGGTGGTAATTTATCTCAGATTGGCCGTCTTTCCTCCTTTTCTCACCTCACTTCGCTTCAAACTCTACAAATCAGGAATTTCGGTAATCTCCAATCACTTGCTGAATCAGCACTGCCATCCTCCCTCTCTCACCTGACCATCTCCCGTTGCCCGAATCTCCAATCACTTGCTGAATCAGCACTGCCCTCCTCCCTCTCTCACCTGAACATCTATGATTGCCCGAATCTCCAATTACTACCTGAATCAGCACTGCCCTCCTCCCTCTCTCACCTGGACATCTCCCATTGTCCTAATCTCCAATCACTACCTGAATCAGCACTGCTCTCCTCCCTCTCTCACCTGGACATCTCCCACTGTCCTAATCTCCAATCACTTGCTGAATCAGCACTGCCCTCCTCCCTCTCTCACCTGACCATCTCCCATTGCCCTAATCTCCATTCACTTTCAGAAAAAGGGATGCCCTCTTCCCTCTCTAAACTATCTATTTCCAAATGTTCATTGCTCACACCACTACTAGAATTTAACAAGGGGGAATACTGGACAAATATTGCTCATATCTCCACCATACAGATCGATTGGAAATGCATGTAATGATTAAAACGAATGACTCCCCAACTGATGTAAGCTATTCTTTTCCCTCATAAGCTTTTTATTTCACTTTGCTTTTTTGTTACTTCTTTTCATTTTTAATCATGCCGTGCTAGCTCATCATCAAACACATAGCATTATATTTAACCTCCATAGAGAATCTAAATTTTTTATAGGATAACGATCACAAGTTTTTAGGAAATAAGTGCAACTTCCATTGTCACATGTTATATAATTCTATATTTCTCATTGCTTATTGGTTTATGCTCTTGCCGTGTTTTAATTCACGTCTCAATTGCCACCATGTTTAATCGAAAGTTTTTAGTTCTTGTAATCATCAACCATCCTATGTCACTAGAAATTTTGATAGGTAAAAGAGGTAGACAAAAATGCTAAACATCTTTTTTCTTTCGTATAGCGACCAGACAACTACGTTTTGAAAGGTAAGGGCTACAGATATACATTTGCAGGGTGTTAATCCAACGAGTAAGAAAATCACTGTCTTCAAATATCTTCTCTTGCGTACACTTTTGCAATTTTAAGCTACATTTTGAACTCATGTGTTGTTGCTAACTTAAACATGTTTTGTGCTTAATCAGATGTGGATTTAGAAGAGCGAGTACGACAAGTCTGGTACATCAATTGTCCGTAGGAAGTGTTTCTAAGGTGCTGCTGCTATTTTTACATGTGTTCCCGAGTTCCTTTTTTTAAAAAATCTTTCCACTAAAGCTATTTTGTCGTCCACAGTGAATTTTCAGGTCTGTTGTTATAGGCAAGTCTTTGAGATGTGACTATCAAAGAAGGGCGATTACAATCAGTGTACCGCTGATACTATTTCATGTTTCCAGTGCTACAGTGCAAGCCTCTTTTGTAAGTTGACAAACTCGATTAGTTAATATGTTTGGGACTCAACTACTACTCATTTTGTAAGACTTAAGTACAGAAAATCAAATTAGAATTATAACTCGCGATGGTTGAGTAAACTCCAAGAA</genome_strand>
        <mrna_strand>TATGGCAGATTGTCCTCCAAAAAGCCTTTTAACTGTCTTGAGAAGCTTGAATTTGAAGATATGACGGGGTGGAAGCAATGGCACGCACTAGGAATTGGAGAGTTCCCTACACTTGAGAACCTTTCCATTAAAAATTGCCCTGAGCTCAGTTTGAAGATACCCATCCAATTTTCAAGTTTAAAAAGGTTACAAGTTAGAGGTTGTCCAGTTGTTTTTGATGATGCTCAACTGTTTAGATCCCAACTTGAAGCAATGAAGCAGATTGAAGCATTATATATACGTGATTGTAACTCTATTACCTCCTTTCCTTTTAGCATACTGCCAACTACCTTGAAGACAATAGAGATATCTGGTTGCCCAAAATTGAAATTCGAGGCGCCAGTTGGTGAGATGTTTGTGGAGTATTTGAGTGTGATTGATTGTGGTTGTGTAGATGATAATATCATTAGAGTTTCTCCCAGCAGCGTGTAAATTGAGTATTATGAGTTGCCACAACTTTACTAGGTTTTTGATTCCTACTGCAACTGAAACTCTCACTATTTCGAATTGTGAGAATGTTGAAAAACTATCGGTGGCATGTGGAGGAGCGGCCCAGATGACGTTACTGCATATTTTGAAGTGTAAGAAGCTCAAGTGTCTGCCAGAACGTATGCAGGAACTCCTCCCATCTCTCAAGGATTTGTATCTTTCCAATTGTCCAGAAATAGAAGGAGAATTGCCCTTCAATTTACATAAACTCCGTATCAGTGATTGCAAGAAACTGGTGAATGGCCGAAAGGAGTGGCATTTACAGAGACTCACAGAGTTAGTGATCCATCATGATGGGAGTGACGAAGATATTGAACATTGGGAGTTGCCTTGTTCTATTACAGAACTTGAGGGTATACAATATGATAACATTAAGCAGCCAACATCTCAAAAGCCTCACCTCTCTTCAATGTCTAAGTATTGGTGGTAATTTATCTCAGATTGGCCGTCTTTCCTCCTTTTCTCACCTCACTTCGCTTCAAACTCTACAAATCAGGAATTTCGGTAATC-CCAATCACTTGCTGAATCAGCACTGCCATCCTCCCTCTCTCACCTGACCATCTCCCGTTGCCCGAATCTCCAATCACTTGCTGAATCAGCACTGCCCTCCTCCCTCTCTCACCTGAACATCTATGATTGCCCGAATCTCCAATTACTACCTGAATCAGCACTGCCCTCCTCCCTCTCTCACCTGGACATCTCCCATTGTCCTAATCTCCAATCACTACCTGAATCAGCACTGCTCTCCTCCCTCTCTCACCTGGACATCTCCCACTGTCCTAATCTCCAATCACTTGCTGAATCAGCACTGCCCTCCTCCCTCTCTCACCTGACCATCTCCCATTGCCCTAATCTCCATTCACTTTCAGAAAAAGGGATGCCCTCTTCCCTCTCTAAACTATCTATTTCCAAATGTTCATTGCTCACACCACTACTAGAATTTAACAAGGGGGAATACTGGACAAATATTGCTCATATCTCCACCATACAGATCGATTGGAAATGCATGTAATGATT-AAACGAATGACTCCCCAACTGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGATTTAGAAGAGCGAGTCCGACAAGTCTGGTACATCAATTGTCCGTAGGAAGTGTTTCTAAG.................................................................................TGAATTTTCAGGTCTGTTGTTATAGGCAAGTCTTTGAGATGTGACTATCAAAGAAGGGCGATTACAATCAGTGTACCGCTGATACTATTTCATGTTTCCAGTGCTACAGTGCAAGCCTCTTTTGTAAGTTG-CAAACTCGATTAGTTAATATGTTTGGGACTCAACTACTACTCATTTTGTAAGACTTAAGTACAGAAAATCAAATTAGAATTATAACTCGCGATGGTTGAGTAAACTCCAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236523" ref_strand="-" ref_description="SGN-E236523 [cLED-13-I7]">
      <seq>actgtggacgacataatagctttagtggaaagttcaaaaagaaaaaaaaaagaactcgggaacagatgtaaaaatagcaacagcaccttagaaacacttcctacggacaattgatttaaacatggtggcaattgagacgtgaattaaaacatggtaagagcacaaaccaataagcaatgagaaatatagaattatataacatgtgacaatggaagttgcacttatttcctaaaacttgtgatcgttatcctttaaaaaatttagattctctatggaggttaaatataatgctatgtgtttgatgatgagctagcacggcatgattaaaaatgaaaagaagtaacaaaaaagcaaagtgaaataaaaagcttatgagggaaaagaatagcttacatcagttggggagccatttgttttaatcattacatgcattccccatcgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="81586" stop="82953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81886" g_stop="81996" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.838"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81997" i_stop="82322" i_length="326">
            <donor d_prob="0.044" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82323" g_stop="82653" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="445" r_length="330" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E236523" ref_strand="-">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236523" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81886" e_stop="81996"/>
          <exon e_start="82323" e_stop="82653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTGGACGACAAAATAGCTTTAGTGGAAAG---ATTTTTTAAAA-AAAGGAACTCGGGAACACATGTAAAAATAGCAGCAGCACCTTAGAAACACTTCCTACGGACAATTGATGTACCAGACTTGTCGTACTCGCTCTTCTAAATCCACATCTGATTAAGCACAAAACATGTTTAAGTTAGCAACAACACATGAGTTCAAAATGTAGCTTAAAATTGCAAAAGTGTACGCAAGAGAAGATATTTGAAGACAGTGATTTTCTTACTCGTTGGATTAACACCCTGCAAATGTATATCTGTAGCCCTTACCTTTCAAAACGTAGTTGTCTGGTCGCTATACGAAAGAAAAAAGATGTTTAGCATTTTTGTCTACCTCTTTTACCTATCAAAATTTCTAGTGACATAGGATGGTTGATGATTACAAGAACTAAAAACTTTCGATTAAACATGGTGGCAATTGAGACGTGAATTAAAACACGGCAAGAGCATAAACCAATAAGCAATGAGAAATATAGAATTATATAACATGTGACAATGGAAGTTGCACTTATTTCCTAAAAACTTGTGATCGTTATCCTATAAAAAATTTAGATTCTCTATGGAGGTTAAATATAATGCTATGTGTTTGATGATGAGCTAGCACGGCATGATTAAAAATGAAAAGAAGTAACAAAAAAGCAAAGTGAAATAAAAAGCTTATGAGGGAAAAGAATAGCTTACATCAGTTGGGGAGTCATTCGTTTTAATCATTACATGCATTTCCAATCGATCT</genome_strand>
        <mrna_strand>ACTGTGGACGACATAATAGCTTTAGTGGAAAGTTCAAAAAGAAAAAAAAAAGAACTCGGGAACAGATGTAAAAATAGCAACAGCACCTTAGAAACACTTCCTACGGACAATTGAT......................................................................................................................................................................................................................................................................................................................................TTAAACATGGTGGCAATTGAGACGTGAATTAAAACATGGTAAGAGCACAAACCAATAAGCAATGAGAAATATAGAATTATATAACATGTGACAATGGAAGTTGCACTTATTTCCT-AAAACTTGTGATCGTTATCCTTTAAAAAATTTAGATTCTCTATGGAGGTTAAATATAATGCTATGTGTTTGATGATGAGCTAGCACGGCATGATTAAAAATGAAAAGAAGTAACAAAAAAGCAAAGTGAAATAAAAAGCTTATGAGGGAAAAGAATAGCTTACATCAGTTGGGGAGCCATTTGTTTTAATCATTACATGCATTCCCCATCGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390802" ref_strand="-" ref_description="SGN-E390802 [TUS-44-I15]">
      <seq>gaaagttcaaaaagaaaaaaaaaagaactcgggaacagatgtaaaaatagcaacagcaccttagaaacacttcctacggacaattgattaaacatggtggcaattgagacgtgaattaaaacatggtaagagcacaaaccaataagcaatgagaaatatagaattatataacatgtgacaatggaagttgcacttatttcctaaaacttgtgatcgttatcctttaaaaaatttagattctctatggaggttaaatataatgctatgtgtttgatgatgagctagcacggcatgattaaaaatgaaaagaagtaacaaaaaagcaaagtgaaataaaaagcttatgagggaaaagaatagcttacatcagttggggagccatttgttttaatcattacatgcattccccatcgatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="81625" stop="82953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81925" g_stop="81996" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="88" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81997" i_stop="82323" i_length="327">
            <donor d_prob="0.044" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82324" g_stop="82654" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="418" r_length="330" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E390802" ref_strand="-">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390802" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81925" e_stop="81996"/>
          <exon e_start="82324" e_stop="82654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAGGAACTCGGGAACACATGTAAAAATAGCAGCAGCACCTTAGAAACACTTCCTACGGACAATTGATGTACCAGACTTGTCGTACTCGCTCTTCTAAATCCACATCTGATTAAGCACAAAACATGTTTAAGTTAGCAACAACACATGAGTTCAAAATGTAGCTTAAAATTGCAAAAGTGTACGCAAGAGAAGATATTTGAAGACAGTGATTTTCTTACTCGTTGGATTAACACCCTGCAAATGTATATCTGTAGCCCTTACCTTTCAAAACGTAGTTGTCTGGTCGCTATACGAAAGAAAAAAGATGTTTAGCATTTTTGTCTACCTCTTTTACCTATCAAAATTTCTAGTGACATAGGATGGTTGATGATTACAAGAACTAAAAACTTTCGATTAAACATGGTGGCAATTGAGACGTGAATTAAAACACGGCAAGAGCATAAACCAATAAGCAATGAGAAATATAGAATTATATAACATGTGACAATGGAAGTTGCACTTATTTCCTAAAAACTTGTGATCGTTATCCTATAAAAAATTTAGATTCTCTATGGAGGTTAAATATAATGCTATGTGTTTGATGATGAGCTAGCACGGCATGATTAAAAATGAAAAGAAGTAACAAAAAAGCAAAGTGAAATAAAAAGCTTATGAGGGAAAAGAATAGCTTACATCAGTTGGGGAGTCATTCGTTTTAATCATTACATGCATTTCCAATCGATCTG</genome_strand>
        <mrna_strand>AAAAAAAAGAACTCGGGAACAGATGTAAAAATAGCAACAGCACCTTAGAAACACTTCCTACGGACAATTGAT.......................................................................................................................................................................................................................................................................................................................................TAAACATGGTGGCAATTGAGACGTGAATTAAAACATGGTAAGAGCACAAACCAATAAGCAATGAGAAATATAGAATTATATAACATGTGACAATGGAAGTTGCACTTATTTCCT-AAAACTTGTGATCGTTATCCTTTAAAAAATTTAGATTCTCTATGGAGGTTAAATATAATGCTATGTGTTTGATGATGAGCTAGCACGGCATGATTAAAAATGAAAAGAAGTAACAAAAAAGCAAAGTGAAATAAAAAGCTTATGAGGGAAAAGAATAGCTTACATCAGTTGGGGAGCCATTTGTTTTAATCATTACATGCATTCCCCATCGATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739248" ref_strand="+" ref_description="SGN-E739248 [LC16CF11]">
      <seq>gttactccttgccagcactaggacaactctcttgtttgaaattcctttctattagagggatgtatggaataagagtggtgacggaagaattctatggcagattgtcctccaaaaagccttttaactgtcttgagacgcttgaatttgaagatatgacggagtggaagcaatggcacgcactaggaattgaaaggttctcaagtgtagggaactctccaattctaaattgccctgagctcagtttggagataccgatccaattttcaagtttaaaagtgtttcgagttgttggttgtccagttgtttttgatgatgctcaactgtttagatcccaacttgaagcaatgaagcagattgaaaaattatatatccatgattgtaactctgttacctcctttccttttagcatactgccaactaccttgaagagaatacagatatctcgttgcccaaaattgaaattggaggcgccagttggtgagatgtttgtggagtatttgagtgtgaaggattgtggttgtgtagaagatatatcacctgagtttctcccaacagcacgtaaattgattattacggattgccagaacgttactaggattttgattcctactgccactgaaactctcactattgagaattgtgagaatgttgaaaaactatcggtggcatgtggaggagcggcccagatgacgtctctgattatttcggagtgtaagaagctcaagtgtcttccagaacgtatgcaggaactccttccatctctcaaggaactgcgtctgtctgattgtccagaaatagaaggagaattgcccttcaatttacaaaaactctatatcagttattgcaagaaattggtgaatggccgaaaggagtggcattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="-" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="84562" stop="83081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84262" g_stop="83381" g_length="882"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="881" r_length="881" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="-" ref_id="SGN-E739248" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84262" e_stop="83381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATTCGTTGCCAGCACTAGGACAACTCCCTTGTTTGAAATTCCTTTCCGTTAAAGGGATGCATGGAATCACAGAGGCGATGGAAGAATTCTATGGCAGATTGTCCTCCAAAAAGCCTTTTAACTGTCTTGAGAAGCTTGAATTTGAAGATATGACGGGGTGGAAGCAATGGCACGCACTAGGAATTGGAGAGTTCCCTACACTTGAGAACCTTTCCATTAAAAATTGCCCTGAGCTCAGTTTGAAGATACCCATCCAATTTTCAAGTTTAAAAAGGTTACAAGTTAGAGGTTGTCCAGTTGTTTTTGATGATGCTCAACTGTTTAGATCCCAACTTGAAGCAATGAAGCAGATTGAAGCATTATATATACGTGATTGTAACTCTATTACCTCCTTTCCTTTTAGCATACTGCCAACTACCTTGAAGACAATAGAGATATCTGGTTGCCCAAAATTGAAATTCGAGGCGCCAGTTGGTGAGATGTTTGTGGAGTATTTGAGTGTGATTGATTGTGGTTGTGTAGATGATAATATCATTAGAGTTTCTCCCAGCAGCGTGTAAATTGAGTATTATGAGTTGCCACAACTTTACTAGGTTTTTGATTCCTACTGCAACTGAAACTCTCACTATTTCGAATTGTGAGAATGTTGAAAAACTATCGGTGGCATGTGGAGGAGCGGCCCAGATGACGTTACTGCATATTTTGAAGTGTAAGAAGCTCAAGTGTCTGCCAGAACGTATGCAGGAACTCCTTCCATCTCTCAAGGATTTGTATCTTTCCAATTGTCCAGAAATAGAAGGAGAATTGCCCTTCAATTTACATAAACTCCGTATCAGTGATTGCAAGAAACTGGTGAATGGCCGAAAGGAGTGGCATTTA</genome_strand>
        <mrna_strand>GTTACTCCTTGCCAGCACTAGGACAACTCTCTTGTTTGAAATTCCTTTCTATTAGAGGGATGTATGGAATAAGAGTGGTGACGGAAGAATTCTATGGCAGATTGTCCTCCAAAAAGCCTTTTAACTGTCTTGAGACGCTTGAATTTGAAGATATGACGGAGTGGAAGCAATGGCACGCACTAGGAATTGAAAGGTTCTCAAGTGTAGGGAACTCTCCAATTCTAAATTGCCCTGAGCTCAGTTTGGAGATACCGATCCAATTTTCAAGTTTAAAAGTGTTTCGAGTTGTTGGTTGTCCAGTTGTTTTTGATGATGCTCAACTGTTTAGATCCCAACTTGAAGCAATGAAGCAGATTGAAAAATTATATATCCATGATTGTAACTCTGTTACCTCCTTTCCTTTTAGCATACTGCCAACTACCTTGAAGAGAATACAGATATCTCGTTGCCCAAAATTGAAATTGGAGGCGCCAGTTGGTGAGATGTTTGTGGAGTATTTGAGTGTGAAGGATTGTGGTTGTGTAGAAGAT-ATATCACCTGAGTTTCTCCCAACAGCACGTAAATTGATTATTACGGATTGCCAGAACGTTACTAGGATTTTGATTCCTACTGCCACTGAAACTCTCACTATTGAGAATTGTGAGAATGTTGAAAAACTATCGGTGGCATGTGGAGGAGCGGCCCAGATGACGTCTCTGATTATTTCGGAGTGTAAGAAGCTCAAGTGTCTTCCAGAACGTATGCAGGAACTCCTTCCATCTCTCAAGGAACTGCGTCTGTCTGATTGTCCAGAAATAGAAGGAGAATTGCCCTTCAATTTACAAAAACTCTATATCAGTTATTGCAAGAAATTGGTGAATGGCCGAAAGGAGTGGCATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739882" ref_strand="+" ref_description="SGN-E739882 [LC19AH08]">
      <seq>ggaagatttgggtgaagcaaaaaacttatatggatctctatcaattctagagttggaaaatgtggttgatagaagggaagctgagaaggcaaagatgagggagaagaatcatgttgacaagttatctttgaagtggagtgaaagtattagtgctgacaattcacatacagaaagagacatacttgatgagctatgcccacataaaaacataaaagaagtcaaaatcattggatatagagggacaaactttcccgattgggttgctgatcctttgtttcttaaactggtgaaattgtctcttagaaactgcaagaactgttattccttgccagcactaggacaactcccttgtttgaaattcctttctattaaagggatgcatggaataacagaggtgacggaagaattctatggtagtttgtcctccaaaaatccttttaactctcttgtgaagcttagatttgaagatatgcctgagtggaagcaatggcacctaccgggtggtggagagttttctacacttgaaaaccttttaatagaaaattgccctgagctcagtttggagatacccatccaattttcaagtttaaaaaggttagaagttgttggttgtccagttgttattgatgatgctcaactgtttagatcccaacttaaagcaatgaagcagattgaggaaatatatatatgtgattgtaagtctgttacctcctttccttttagcatactgccaactaccttgaagagaatacagatatctcattgcccgaaattgagattggaggcgccagtttgtgagatgtttgtggagtatttgagtgtgaaggattgtggttgtgtagatgatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="-" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="84879" stop="83430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84579" g_stop="83732" g_length="848"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="848" r_length="848" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="-" ref_id="SGN-E739882" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84579" e_stop="83732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATATTTGGGTGAAGCACAAAACTTGTATGGATCTCTATCAGTTGTAAATTTGGAAAATGTGGTTGATAGAAGGGAAGCTGTGAAGGCAAAGATGAGGGAGAAGAATCACGTTGACAAGTTATCTTTGGAGTGGAGTGAAAGCATTAGTGCTGACAATTCACAAACAGAAATAGACATACTTGATGAGCTACGCCCACATAAAAACATTAAAGAAGTCGAAATCAGTGGATACAGAGGGACAAACTTCCCCAATTGGGTAGCTGATCCTTTGTTTGTTAAGCTAGTGAAATTGTCTCTTAGAAACTGCAACAACTGTTATTCGTTGCCAGCACTAGGACAACTCCCTTGTTTGAAATTCCTTTCCGTTAAAGGGATGCATGGAATCACAGAGGCGATGGAAGAATTCTATGGCAGATTGTCCTCCAAAAAGCCTTTTAACTGTCTTGAGAAGCTTGAATTTGAAGATATGACGGGGTGGAAGCAATGGCACGCACTAGGAATTGGAGAGTTCCCTACACTTGAGAACCTTTCCATTAAAAATTGCCCTGAGCTCAGTTTGAAGATACCCATCCAATTTTCAAGTTTAAAAAGGTTACAAGTTAGAGGTTGTCCAGTTGTTTTTGATGATGCTCAACTGTTTAGATCCCAACTTGAAGCAATGAAGCAGATTGAAGCATTATATATACGTGATTGTAACTCTATTACCTCCTTTCCTTTTAGCATACTGCCAACTACCTTGAAGACAATAGAGATATCTGGTTGCCCAAAATTGAAATTCGAGGCGCCAGTTGGTGAGATGTTTGTGGAGTATTTGAGTGTGATTGATTGTGGTTGTGTAGATGATA</genome_strand>
        <mrna_strand>GGAAGATTTGGGTGAAGCAAAAAACTTATATGGATCTCTATCAATTCTAGAGTTGGAAAATGTGGTTGATAGAAGGGAAGCTGAGAAGGCAAAGATGAGGGAGAAGAATCATGTTGACAAGTTATCTTTGAAGTGGAGTGAAAGTATTAGTGCTGACAATTCACATACAGAAAGAGACATACTTGATGAGCTATGCCCACATAAAAACATAAAAGAAGTCAAAATCATTGGATATAGAGGGACAAACTTTCCCGATTGGGTTGCTGATCCTTTGTTTCTTAAACTGGTGAAATTGTCTCTTAGAAACTGCAAGAACTGTTATTCCTTGCCAGCACTAGGACAACTCCCTTGTTTGAAATTCCTTTCTATTAAAGGGATGCATGGAATAACAGAGGTGACGGAAGAATTCTATGGTAGTTTGTCCTCCAAAAATCCTTTTAACTCTCTTGTGAAGCTTAGATTTGAAGATATGCCTGAGTGGAAGCAATGGCACCTACCGGGTGGTGGAGAGTTTTCTACACTTGAAAACCTTTTAATAGAAAATTGCCCTGAGCTCAGTTTGGAGATACCCATCCAATTTTCAAGTTTAAAAAGGTTAGAAGTTGTTGGTTGTCCAGTTGTTATTGATGATGCTCAACTGTTTAGATCCCAACTTAAAGCAATGAAGCAGATTGAGGAAATATATATATGTGATTGTAAGTCTGTTACCTCCTTTCCTTTTAGCATACTGCCAACTACCTTGAAGAGAATACAGATATCTCATTGCCCGAAATTGAGATTGGAGGCGCCAGTTTGTGAGATGTTTGTGGAGTATTTGAGTGTGAAGGATTGTGGTTGTGTAGATGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738711" ref_strand="+" ref_description="SGN-E738711 [LC14CH05]">
      <seq>ctgcccttagctctgaagacactcgctggcatgttatgctccaaatcagagattgatgagtggaaacgtattttgagaagtgaaatatgggagctgcgagacaatgacatattaccagcgttaatgttgagctacaatgatcttcccgcacatttaaagcgatgcttttctttttgtgcaatatttcctaaagattatccatttaggaaagaacaagttattcatctatggattgccaatggtctcgtaccagtgaaagatgaaataaatcaagatttaggcaaccaattctttctcgagttgagttccagatcattatttgaaagggtcccaaatccttctgaaggaaacataaaggaattattcctaatgcatgaccttgtcaatgatttagcccaacttgcatcttcaaaactttgtatcaggttggaagagagccaaggatctcatatgttggaaaaaagtcggcacttatcatattctatggtcaatgatggtgagtttgagaaattgacacccctctgcaaattggaggggctgaggactttgcttccgatatgtattagtgtcaattattgttatcaccctctaagcaagagggtgttgcataacatactgcctacactaagattcttgagggtactatcattctctcattacaagattgaggagttgccaaatgacttgtttatcaaattaaagctcctcagatttttggacctttctgagacatggattaaaaagttgccagattccatatgtggattgtataacttagagacacttctcctgtcatcttgttgttctcttaaggagctaccgctgcatatggagaagttgattaacttgcgtcatcttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="-" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="85841" stop="84381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85541" g_stop="84681" g_length="861"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="861" r_length="861" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="-" ref_id="SGN-E738711" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85541" e_stop="84681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCCTTAGCTCTGAAGACGCTCGCTGGCATGTTACGCTCCAAATCAGAGGTTGAAGAGTGGAAATGTATTCTGAGAAGTGAAATATGGGAGCTGCGAGACAATGACATATTACCAGCGTTAATGTTGAGCTACAATGATCTTCCCGCACATTTAAAGCGATGCTTTTCTTTTTGTGCAATATTTCCTAAAGATTATCCATTTAGGAAAGAACAAGTTATTCATCTGTGGATTGCCAATGGTCTTGTACCTGTGGAAGATGAAATAATTCAAGATTTAGGCAACCAATACTTTCTCGAGTTGAGATCAAGATCATTATTAGAAAGTGTCCCAAATCCTTCTAAAGGGGACATAGA-GAA--ATTCTTAATGCATGACCTTGTCAATGATTTGGCACAAATTGTATCTTCAAATCTTTGTATAAGGTTGGAAGAGAACAAAGGATCGCATATGTTGGAACAATGTCGGCACTTATCTTATTCTATAGGAGGAGATGGTGAGTTTGAGAAATTGACACCCCTCTACAAATTGGAGCAGCTGAGGACATTGCTTCCGATATATATTATTGGCGATTATCGTTATCACCCTCTAAGCAAGAGGGTGTTGCATAACATACTGCCTACACTAATATCCTTGAGGATGCTATCATTGTCTCATCATTACACGATTGTTGAGTTGCCAAATGAATTGTTTATCAAATTAAAGCTCCTCAGATTTTTGGACCTTTCTCAGACAAGGATAAAAAGGTTGCCAGATTCCATTTGTGGATTGTATAACTTGGAGACACTTCTCCTGTCATCTTGTTCTAAACTTGAGGAGCTACCGCTGCAGATGGAAAAGTTGATTAACTTGCGTCATCTTGAC</genome_strand>
        <mrna_strand>CTGCCCTTAGCTCTGAAGACACTCGCTGGCATGTTATGCTCCAAATCAGAGATTGATGAGTGGAAACGTATTTTGAGAAGTGAAATATGGGAGCTGCGAGACAATGACATATTACCAGCGTTAATGTTGAGCTACAATGATCTTCCCGCACATTTAAAGCGATGCTTTTCTTTTTGTGCAATATTTCCTAAAGATTATCCATTTAGGAAAGAACAAGTTATTCATCTATGGATTGCCAATGGTCTCGTACCAGTGAAAGATGAAATAAATCAAGATTTAGGCAACCAATTCTTTCTCGAGTTGAGTTCCAGATCATTATTTGAAAGGGTCCCAAATCCTTCTGAAGGAAACATAAAGGAATTATTCCTAATGCATGACCTTGTCAATGATTTAGCCCAACTTGCATCTTCAAAACTTTGTATCAGGTTGGAAGAGAGCCAAGGATCTCATATGTTGGAAAAAAGTCGGCACTTATCATATTCTATGGTCAATGATGGTGAGTTTGAGAAATTGACACCCCTCTGCAAATTGGAGGGGCTGAGGACTTTGCTTCCGATATGTATTAGTGTCAATTATTGTTATCACCCTCTAAGCAAGAGGGTGTTGCATAACATACTGCCTACACTAAGATTCTTGAGGGTACTATCA-T-TCTC-TCATTACAAGATTGAGGAGTTGCCAAATGACTTGTTTATCAAATTAAAGCTCCTCAGATTTTTGGACCTTTCTGAGACATGGATTAAAAAGTTGCCAGATTCCATATGTGGATTGTATAACTTAGAGACACTTCTCCTGTCATCTTGTTGTTCTCTTAAGGAGCTACCGCTGCATATGGAGAAGTTGATTAACTTGCGTCATCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317080" ref_strand="+" ref_description="SGN-E317080 [cTOA-27-B15]">
      <seq>ttgccttgatgatgggaaatgagcaaattagcatggacaatttgtctactgaagcctcttggtctctattcaaaagaaatgcatttgaaaacatggatcctatggaacatccggaacttgaagaggttggaaaacaaattgcagccaagtgcaaaggactgcccttagctctgaagacgctcgctggcatgttacgctccaaatcagaggttgaagagtggaaatgtattctgagaagtgaaatatgggagctgcgagacaatgacatattaccagcgttaatgttgagctacaatgatcttcccgcacatttaaagcgatgcttttctttttgtgcaatatttcctaaagattatccatttaggaaagaacaagttattcatctgtggattgccaatggtcttgtacctgtggaagatgaaataattcaagatttaggcaaccaatactttctcgagttgagatcaagatcattattagaaagtgtcccaaatccttctaaaggggacatagagaaattcttaatgcatgaccttgtcaatgatttggcacaaattgtatcttcaaatctttgtataaggttggaagagaacaaaggatcgcatatgttggaacaatgtcggcacttatcttattctataggaggagatggtgagtttgagaaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="-" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="85999" stop="84731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85699" g_stop="85031" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="-" ref_id="SGN-E317080" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85699" e_stop="85031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCTTGATGATGGGAAATGAGCAAATTAGCATGGACAATTTGTCTACTGAAGCCTCTTGGTCTCTATTCAAAAGAAATGCATTTGAAAACATGGATCCTATGGAACATCCGGAACTTGAAGAGGTTGGAAAACAAATTGCAGCCAAGTGCAAAGGACTGCCCTTAGCTCTGAAGACGCTCGCTGGCATGTTACGCTCCAAATCAGAGGTTGAAGAGTGGAAATGTATTCTGAGAAGTGAAATATGGGAGCTGCGAGACAATGACATATTACCAGCGTTAATGTTGAGCTACAATGATCTTCCCGCACATTTAAAGCGATGCTTTTCTTTTTGTGCAATATTTCCTAAAGATTATCCATTTAGGAAAGAACAAGTTATTCATCTGTGGATTGCCAATGGTCTTGTACCTGTGGAAGATGAAATAATTCAAGATTTAGGCAACCAATACTTTCTCGAGTTGAGATCAAGATCATTATTAGAAAGTGTCCCAAATCCTTCTAAAGGGGACATAGAGAAATTCTTAATGCATGACCTTGTCAATGATTTGGCACAAATTGTATCTTCAAATCTTTGTATAAGGTTGGAAGAGAACAAAGGATCGCATATGTTGGAACAATGTCGGCACTTATCTTATTCTATAGGAGGAGATGGTGAGTTTGAGAAATTGA</genome_strand>
        <mrna_strand>TTGCCTTGATGATGGGAAATGAGCAAATTAGCATGGACAATTTGTCTACTGAAGCCTCTTGGTCTCTATTCAAAAGAAATGCATTTGAAAACATGGATCCTATGGAACATCCGGAACTTGAAGAGGTTGGAAAACAAATTGCAGCCAAGTGCAAAGGACTGCCCTTAGCTCTGAAGACGCTCGCTGGCATGTTACGCTCCAAATCAGAGGTTGAAGAGTGGAAATGTATTCTGAGAAGTGAAATATGGGAGCTGCGAGACAATGACATATTACCAGCGTTAATGTTGAGCTACAATGATCTTCCCGCACATTTAAAGCGATGCTTTTCTTTTTGTGCAATATTTCCTAAAGATTATCCATTTAGGAAAGAACAAGTTATTCATCTGTGGATTGCCAATGGTCTTGTACCTGTGGAAGATGAAATAATTCAAGATTTAGGCAACCAATACTTTCTCGAGTTGAGATCAAGATCATTATTAGAAAGTGTCCCAAATCCTTCTAAAGGGGACATAGAGAAATTCTTAATGCATGACCTTGTCAATGATTTGGCACAAATTGTATCTTCAAATCTTTGTATAAGGTTGGAAGAGAACAAAGGATCGCATATGTTGGAACAATGTCGGCACTTATCTTATTCTATAGGAGGAGATGGTGAGTTTGAGAAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487313" ref_strand="+" ref_description="SGN-E487313 [cSTE-25-K11]">
      <seq>tcatatttcagaaatggagattggcttagcagttggtggtgcatttctctcttcagctttgaatgttctgtttgataggcttgctcctcagggtgatcttctcaacatgtttcagaagcataaacatcatgttcggctcttaaagaagctgaaaatgactttgtgtggtcttcagattgtgctaagtgatgcagagaataagcaagcatcaaatccatctgtgcgtgactggcttaatgagcttcgagatgctgtcgactctgctgaaaacttaatagaacaagtcaattatgaagctttgaggcttaaggtggaaggtcagcatcagaattttgcagaaacaagcaaccagcaagtaagtgacctcaacctttgcttgagtgatgatttctttcttaacataaaggataagttggaagaaaccattgaaacattggaggtgttggaaaagcaaattggccgccttggcttaaaagaacattttcgttcgactaaacaagaaactagaacaccttcaacttctttagttgatgattctgatatctttggaaagcataatgatataaaggatttgattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="-" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="86979" stop="85802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86679" g_stop="86101" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="-" ref_id="SGN-E487313" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86679" e_stop="86101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATTTGAGAAATGGAGATTGGGTTAGCAGTTGGTGGTGCATTTCTCTCCTCAGCTTTGAATGTTCTGTTTGATAGGCTTGCTCCTCACGGTGATCTGCTCAACATGTTTCGTAAGCATAAGGATCATGTTAAGCTCTTAAAGAAGCTGAAAATGACTTTGCGTGGTCTTCAGATTGTGCTGAGTGATGCAGAGAATAAGCAAGCATCAAATCCATCTGTGAGCGACTGGCTTAATGAGCTTCGAGATACTGTTGACTCTGCTGAAAATTTAATAGAAGAAGTCAATTATGAAGCTTTGAGGCTTAAGGTGGAAGGCCAGCATCAAAATCTTGCAGAAACAAGCAACAAACAAGTAAGTGACCTCAACCTGTGCTTGAGTGATGATTTCTTTCGTAACATAAAGGATAAATTGGAAGAAACCATTGAAACGTTGGAGGTGTTGGAAAAGCAAATTGGTCGCCTTGGCTTAAAGGAGCATTTTATTTCGACCAAACAAGAAACTAGAACACCTTCAACTTCTTTGGTGGATGATTCTGGTATCTTTGGAAGGCAGAACGAAATAGAGAATTTGATTGG</genome_strand>
        <mrna_strand>TCATATTTCAGAAATGGAGATTGGCTTAGCAGTTGGTGGTGCATTTCTCTCTTCAGCTTTGAATGTTCTGTTTGATAGGCTTGCTCCTCAGGGTGATCTTCTCAACATGTTTCAGAAGCATAAACATCATGTTCGGCTCTTAAAGAAGCTGAAAATGACTTTGTGTGGTCTTCAGATTGTGCTAAGTGATGCAGAGAATAAGCAAGCATCAAATCCATCTGTGCGTGACTGGCTTAATGAGCTTCGAGATGCTGTCGACTCTGCTGAAAACTTAATAGAACAAGTCAATTATGAAGCTTTGAGGCTTAAGGTGGAAGGTCAGCATCAGAATTTTGCAGAAACAAGCAACCAGCAAGTAAGTGACCTCAACCTTTGCTTGAGTGATGATTTCTTTCTTAACATAAAGGATAAGTTGGAAGAAACCATTGAAACATTGGAGGTGTTGGAAAAGCAAATTGGCCGCCTTGGCTTAAAAGAACATTTTCGTTCGACTAAACAAGAAACTAGAACACCTTCAACTTCTTTAGTTGATGATTCTGATATCTTTGGAAAGCATAATGATATAAAGGATTTGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427534" ref_strand="+" ref_description="SGN-E427534 [STM-48-L11]">
      <seq>tcagatttcagaaatggagattggcttagcagttggtggtgcatttctctcttcagctttgaatgttctgtttgataggcttgctcctcagggtgatcttctcaacatgtttcagaagcataaacatcatgttcggctcttaaagaagctgaaaatgactttgtgtggtcttcagattgtgctaagtgatgcagagaataagcaagcatcaaatccatctgtgcgtgactggcttaatgagcttcgagatgctgtcgactctgctgaaaacttaatagaacaagtcaattatgaagctttgaggcttaaggtggaaggtcagcatcagaattttgcagaaacaagcaaccagcaagtaagtgacctcaacctttgcttgagtgatgatttctttcttaacataaaggataagttggaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="-" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="86979" stop="85959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86679" g_stop="86259" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="-" ref_id="SGN-E427534" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86679" e_stop="86259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATTTGAGAAATGGAGATTGGGTTAGCAGTTGGTGGTGCATTTCTCTCCTCAGCTTTGAATGTTCTGTTTGATAGGCTTGCTCCTCACGGTGATCTGCTCAACATGTTTCGTAAGCATAAGGATCATGTTAAGCTCTTAAAGAAGCTGAAAATGACTTTGCGTGGTCTTCAGATTGTGCTGAGTGATGCAGAGAATAAGCAAGCATCAAATCCATCTGTGAGCGACTGGCTTAATGAGCTTCGAGATACTGTTGACTCTGCTGAAAATTTAATAGAAGAAGTCAATTATGAAGCTTTGAGGCTTAAGGTGGAAGGCCAGCATCAAAATCTTGCAGAAACAAGCAACAAACAAGTAAGTGACCTCAACCTGTGCTTGAGTGATGATTTCTTTCGTAACATAAAGGATAAATTGGAAGAA</genome_strand>
        <mrna_strand>TCAGATTTCAGAAATGGAGATTGGCTTAGCAGTTGGTGGTGCATTTCTCTCTTCAGCTTTGAATGTTCTGTTTGATAGGCTTGCTCCTCAGGGTGATCTTCTCAACATGTTTCAGAAGCATAAACATCATGTTCGGCTCTTAAAGAAGCTGAAAATGACTTTGTGTGGTCTTCAGATTGTGCTAAGTGATGCAGAGAATAAGCAAGCATCAAATCCATCTGTGCGTGACTGGCTTAATGAGCTTCGAGATGCTGTCGACTCTGCTGAAAACTTAATAGAACAAGTCAATTATGAAGCTTTGAGGCTTAAGGTGGAAGGTCAGCATCAGAATTTTGCAGAAACAAGCAACCAGCAAGTAAGTGACCTCAACCTTTGCTTGAGTGATGATTTCTTTCTTAACATAAAGGATAAGTTGGAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239430" ref_strand="+" ref_description="SGN-E239430 [cLED-23-K21]">
      <seq>tgagaagagaaaagaggactgttttgattagctgaaaaatagctgtactaatttcaagcaatcactaatcattcttgtttgcaaattactctcaacattcaacagatttgagaaatggagattgggttagcagttggtggtgcatttctctcctcagctttgaatgttctgtttgataggcttgctcctaacggtgatctgctcaacatgtttcggaagcatcaggatcatgttaagctcttaaagaagctggaggacattttgcttggtcttcagattgtgctaagtgatgcagagaataagcaagcatcaaatcgacatgtgagccaatggtttaataagcttcagagtgctgtggaaggcgctgaaaacttgatagaagaattcaattatgaagctttgagacttaaggtggaaggccagcatcaaaatcttgcagaaacaagcaatcaacaaatgtggatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="-" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="87165" stop="86017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86865" g_stop="86762" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86761" i_stop="86676" i_length="86">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86675" g_stop="86325" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="456" r_length="351" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="-" ref_id="SGN-E239430" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86865" e_stop="86762"/>
          <exon e_start="86675" e_stop="86325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAAGAGAAAAGAGGACTGTTTTGCTT-CCTGAAAAATAGTTTTACTCATTTCAAGCAATCACTGATCATTCTTGTTTGCAAACTACTCTCAACATTCAACAGGTGAAGTAAAGTACTCACTCTCTTAGTAGTTGAAGATAGATACAGAAAAATTCATCTTCTCAAAATCATTTTGTGTTTCCTTTCAGATTTGAGAAATGGAGATTGGGTTAGCAGTTGGTGGTGCATTTCTCTCCTCAGCTTTGAATGTTCTGTTTGATAGGCTTGCTCCTCACGGTGATCTGCTCAACATGTTTCGTAAGCATAAGGATCATGTTAAGCTCTTAAAGAAGCTGAAAATGACTTTGCGTGGTCTTCAGATTGTGCTGAGTGATGCAGAGAATAAGCAAGCATCAAATCCATCTGTGAGCGACTGGCTTAATGAGCTTC-GAGATACTGTTGACTCTGCTGAAAATTTAATAGAAGAAGTCAATTATGAAGCTTTGAGGCTTAAGGTGGAAGGCCAGCATCAAAATCTTGCAGAAACAAGCAACAAACAA</genome_strand>
        <mrna_strand>TGAGAAGAGAAAAGAGGACTGTTTTGATTAGCTGAAAAATAGCTGTACTAATTTCAAGCAATCACTAATCATTCTTGTTTGCAAATTACTCTCAACATTCAACAG......................................................................................ATTTGAGAAATGGAGATTGGGTTAGCAGTTGGTGGTGCATTTCTCTCCTCAGCTTTGAATGTTCTGTTTGATAGGCTTGCTCCTAACGGTGATCTGCTCAACATGTTTCGGAAGCATCAGGATCATGTTAAGCTCTTAAAGAAGCTGGAGGACATTTTGCTTGGTCTTCAGATTGTGCTAAGTGATGCAGAGAATAAGCAAGCATCAAATCGACATGTGAGCCAATGGTTTAATAAGCTTCAGAG-TGCTGTGGAAGGCGCTGAAAACTTGATAGAAGAATTCAATTATGAAGCTTTGAGACTTAAGGTGGAAGGCCAGCATCAAAATCTTGCAGAAACAAGCAATCAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553330" ref_strand="+" ref_description="SGN-E553330 [cTSB-4-M8]">
      <seq>agtgaccaacgtcggggaagctaaatcatcttacacagtggaaatagattccccacccggagtcactgtgattgttaagccctctactctgaaattctcccagttggaccagaagttgaaataccaggtgacatttacgagaagagatgatagcacaagcagtggtattgctcaaggattcttgaaatggagtagtaagaagtactccgtaagaagtccaatcgcagttgtgctacaacctacaattggtttttagttttatatttcttctcattttagtaattggaacaatgtatgacaacactatgtttgtggtttcaataaaaaccattgaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="-" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="93261" stop="92324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92961" g_stop="92625" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="338" polyA_stop="347"/>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="-" ref_id="SGN-E553330" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92961" e_stop="92625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGACCAACGTCGGGGAAGCTAAATCATCTTACACAGTGGAAATAGATTCCCCACCCAGAGTCACTGTGATTGTTAAGCCCTCTACTCTGAAATTCTCCCAGTTGGACCAGAAGTTGAAATACCAGGTGACATTTACGAGAAGAGATGATAGCACAAGCAGTGGTATTGCTCAAGGATTCTTGAAATGGAGTAGTAAGAAGTACTCCGTAAGAAGTCCAATCGCAGTTGTGCTACAACCTACAATTGGTTTTTAGTTTTATATTTCTTCTCATTTTAGTAATTGGAACAATGTATGACAACACTATGTTTGTGGTTTCAATAAAAACCATTGAATA</genome_strand>
        <mrna_strand>AGTGACCAACGTCGGGGAAGCTAAATCATCTTACACAGTGGAAATAGATTCCCCACCCGGAGTCACTGTGATTGTTAAGCCCTCTACTCTGAAATTCTCCCAGTTGGACCAGAAGTTGAAATACCAGGTGACATTTACGAGAAGAGATGATAGCACAAGCAGTGGTATTGCTCAAGGATTCTTGAAATGGAGTAGTAAGAAGTACTCCGTAAGAAGTCCAATCGCAGTTGTGCTACAACCTACAATTGGTTTTTAGTTTTATATTTCTTCTCATTTTAGTAATTGGAACAATGTATGACAACACTATGTTTGTGGTTTCAATAAAAACCATTGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553411" ref_strand="+" ref_description="SGN-E553411 [cTSC-1-A18]">
      <seq>cacaaacatagtgttgtcatacattgttccaattactaaaatgagaagaaatataaaactaaaaaccaattgtaggttgtagcacaactgcgattggacttcttacggagtacttcttactactccatttcaagaatccttgagcaataccactgcttgtgctatcatctcttctcgtaaatgtcacctggtatttcaacttctggtccaactgggagaatttcagagtagagggcttaacaatcacagtgactccgggtggggaatctatttccactgtgtaagatgatttagcttccccgacgttggtcactgttctagtatatgtctgagagatgtctccgagtgtgatggagaatgatggataatttagttgagcttcaggaatgtgtttcactttgttacaatccactttgtgtttaacgatgcttcccacctgttgatttgtataattcaaaccgcacaggtaaggcaggtagtcctcaattgagatgtcgtagattagtcctggatcattagctctcaatggattgacatgtcctgcaccaatggcaaagatgtcagccggaaggagcctttcatctaagatgggaacattggcgaggttcagtgtgttagcggttgtcatgattgctgatttgatagctgaaggggaccaattgcggtgtgagcttttcagcaatgctgcaactccactgaggtgaggacaagacatggaggtgccctgtataatattgaaagcagattttgtgtgttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="92348" stop="93706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92648" g_stop="93406" g_length="759"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="759" r_length="759" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E553411" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92648" e_stop="93406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAACATAGTGTTGTCATACATTGTTCCAATTACTAAAATGAGAAGAAATATAAAACTAAAAACCAATTGTAGGTTGTAGCACAACTGCGATTGGACTTCTTACGGAGTACTTCTTACTACTCCATTTCAAGAATCCTTGAGCAATACCACTGCTTGTGCTATCATCTCTTCTCGTAAATGTCACCTGGTATTTCAACTTCTGGTCCAACTGGGAGAATTTCAGAGTAGAGGGCTTAACAATCACAGTGACTCTGGGTGGGGAATCTATTTCCACTGTGTAAGATGATTTAGCTTCCCCGACGTTGGTCACTGTTCTAGTATATGTCTGAGAGATGTCTCCGAGTGTGATGGAGAATGATGGATAATTTAGTTGAGCTTCAGGAATGTGTTTCACTTTGTTACAATCCACTTTGTGTTTAACGATGCTTCCCACCTGTTGATTTGTATAATTCAAACCGCACAGGTAAGGCAGGTAGTCCTCAATTGAGATGTCGTAGATTAGTCCTGGATCATTAGCTCTCAATGGATTGACATGTCCTGCACCAATGGCAAAGATGTCAGCCGGAAGGAGCCTTTCATCTAAGATGGGAACATTGGCGAGGTTCAGTGTGTTAGCGGTTGTCATGATTGCTGATTTGATAGCTGAAGGGGACCAATTGCGGTGTGAGCTTTTCAGCAATGCTGCAACTCCACTGAGGTGAGGACAAGACATGGAGGTGCCCTGTATAATATTGAAGGCAGATTTTGTGTGTTTTT</genome_strand>
        <mrna_strand>CACAAACATAGTGTTGTCATACATTGTTCCAATTACTAAAATGAGAAGAAATATAAAACTAAAAACCAATTGTAGGTTGTAGCACAACTGCGATTGGACTTCTTACGGAGTACTTCTTACTACTCCATTTCAAGAATCCTTGAGCAATACCACTGCTTGTGCTATCATCTCTTCTCGTAAATGTCACCTGGTATTTCAACTTCTGGTCCAACTGGGAGAATTTCAGAGTAGAGGGCTTAACAATCACAGTGACTCCGGGTGGGGAATCTATTTCCACTGTGTAAGATGATTTAGCTTCCCCGACGTTGGTCACTGTTCTAGTATATGTCTGAGAGATGTCTCCGAGTGTGATGGAGAATGATGGATAATTTAGTTGAGCTTCAGGAATGTGTTTCACTTTGTTACAATCCACTTTGTGTTTAACGATGCTTCCCACCTGTTGATTTGTATAATTCAAACCGCACAGGTAAGGCAGGTAGTCCTCAATTGAGATGTCGTAGATTAGTCCTGGATCATTAGCTCTCAATGGATTGACATGTCCTGCACCAATGGCAAAGATGTCAGCCGGAAGGAGCCTTTCATCTAAGATGGGAACATTGGCGAGGTTCAGTGTGTTAGCGGTTGTCATGATTGCTGATTTGATAGCTGAAGGGGACCAATTGCGGTGTGAGCTTTTCAGCAATGCTGCAACTCCACTGAGGTGAGGACAAGACATGGAGGTGCCCTGTATAATATTGAAAGCAGATTTTGTGTGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700805" ref_strand="+" ref_description="SGN-E700805 [FA14AH05]">
      <seq>gaaaaggacaagttgtaaaggatgctggaggagttggcatgattcttgttagtatccctgagtatggtttcagtaagtttgccgatcctcacgtccttccagctctgtatattacattcaatgatggtatggagattcttcaatacatcaactcaacatcagaaccaactgcaagaattatgttccatggaacaataattggagataaagaagctccggtggttgctgcattttcttctcgcggaccaagctacgctagtcctggtattttgaagcctgatataattggtcctggtaataacattcttgctggttggcatacctccgttgactacgaaaaacacacaaaatctgccttcaatattatacagggcacctccatgtcttgtcctcacctcagtggagttgcagcattgctgaaaagctcacaccgcaattggtccccttcagctatcaaatcagcaatcatgacaaccgctaacacactgaacctcgccaatgttcccatcttagatgaaaggctccttccggctgacatctttgccattggtgcaggacatgtcaatccattgagagctaatgatccaggactaatctacgacatctcaattgaggactacctgccttacctgtgcggtttgaattatacaaatcaacaggtgggaagcatcgttaaacacaaagtggattgtaacaaagtgaaacacattcctgaagctcaactaaattatccatcattctccatcacactcggagacatctctcagacatatactagaacagtgaccaacgtcgggggagctaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="-" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="94042" stop="92635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93742" g_stop="92935" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="-" ref_id="SGN-E700805" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93742" e_stop="92935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGGACAAGTTGTAAAGGATGCTGGAGGAGTTGGCATGATTCTTGTTAGTATCCCTGAGTATGGTTTCAGTAAGTTTGCCGATCCTCACGTCCTTCCAGCTCTGTATATTACATTCAATGATGGTATGGAGATTCTTCAATACATCAACTCAACATCAGAACCAACTGCAAGAATTATGTTCCATGGAACAATAATTGGAGATAAAGAAGCTCCGGTGGTTGCTGCATTTTCTTCTCGCGGACCAAGCTACGCTAGTCCTGGTATTTTGAAGCCTGATATAATTGGTCCTGGTAATAACATTCTTGCTGCTTGGCATACCTCCGTTGACTACGAAAAACACACAAAATCTGCCTTCAATATTATACAGGGCACCTCCATGTCTTGTCCTCACCTCAGTGGAGTTGCAGCATTGCTGAAAAGCTCACACCGCAATTGGTCCCCTTCAGCTATCAAATCAGCAATCATGACAACCGCTAACACACTGAACCTCGCCAATGTTCCCATCTTAGATGAAAGGCTCCTTCCGGCTGACATCTTTGCCATTGGTGCAGGACATGTCAATCCATTGAGAGCTAATGATCCAGGACTAATCTACGACATCTCAATTGAGGACTACCTGCCTTACCTGTGCGGTTTGAATTATACAAATCAACAGGTGGGAAGCATCGTTAAACACAAAGTGGATTGTAACAAAGTGAAACACATTCCTGAAGCTCAACTAAATTATCCATCATTCTCCATCACACTCGGAGACATCTCTCAGACATATACTAGAACAGTGACCAACGTCGGGGAAGCTAAATC</genome_strand>
        <mrna_strand>GAAAAGGACAAGTTGTAAAGGATGCTGGAGGAGTTGGCATGATTCTTGTTAGTATCCCTGAGTATGGTTTCAGTAAGTTTGCCGATCCTCACGTCCTTCCAGCTCTGTATATTACATTCAATGATGGTATGGAGATTCTTCAATACATCAACTCAACATCAGAACCAACTGCAAGAATTATGTTCCATGGAACAATAATTGGAGATAAAGAAGCTCCGGTGGTTGCTGCATTTTCTTCTCGCGGACCAAGCTACGCTAGTCCTGGTATTTTGAAGCCTGATATAATTGGTCCTGGTAATAACATTCTTGCTGGTTGGCATACCTCCGTTGACTACGAAAAACACACAAAATCTGCCTTCAATATTATACAGGGCACCTCCATGTCTTGTCCTCACCTCAGTGGAGTTGCAGCATTGCTGAAAAGCTCACACCGCAATTGGTCCCCTTCAGCTATCAAATCAGCAATCATGACAACCGCTAACACACTGAACCTCGCCAATGTTCCCATCTTAGATGAAAGGCTCCTTCCGGCTGACATCTTTGCCATTGGTGCAGGACATGTCAATCCATTGAGAGCTAATGATCCAGGACTAATCTACGACATCTCAATTGAGGACTACCTGCCTTACCTGTGCGGTTTGAATTATACAAATCAACAGGTGGGAAGCATCGTTAAACACAAAGTGGATTGTAACAAAGTGAAACACATTCCTGAAGCTCAACTAAATTATCCATCATTCTCCATCACACTCGGAGACATCTCTCAGACATATACTAGAACAGTGACCAACGTCGGGGGAGCTAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553415" ref_strand="+" ref_description="SGN-E553415 [cTSC-1-A23]">
      <seq>aaagacttacccactaaacagtgagtcaccaaaagatgaggctggacatggcacacacacctcgagcacagctgcaggaaattttgtgaaaggtgccaatgtgtatgggaacgctaaaggcactgcggttgggattgcccctcttgctcacctggccatgtataaggtctgtgataatgattgctcggaaagtgccattttagctggcatggatgaagcaattgatgatggagtagatatcatgtccctttccctgggtggatctagcaggccattctattatgatgtgattgcactcggggcatacagtgcagcaaaaagaggtattcttgtaagttgctctgcaggtaatggtggtccatcccatagcactttatcaaacgaagctccgtggattctgacagtaggtgcaagcactattgacagggagcttaaggccactgttatgcttggagaccaaaaactatttgagggtgaatcagtatttagtcctaaggttccggattcctcattttaccctttgattgacccttcactgaatgcaacccacataggcagccgtttttgcgaaccaggtactctgagtgaccccaaatttaaaggcaaaattgttgtgtgcatggcaggtggttatgtatccacgattggaaaaggacaagttgtaaaggatgctggaggagttggcatgattcttgttagtatccctgagtatggtttcagtaagtttgccgatcctcacgtccttccagctctgtatattacattccatgatggtatggagattccttcatacatcaactcaacatcaaaatcaactgccaagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="-" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="94689" stop="93265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94389" g_stop="93565" g_length="825"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="826" r_length="826" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="-" ref_id="SGN-E553415" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94389" e_stop="93565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACTTACCCACTAAACAGTGAGTCACCAAAAGATGAGGCTGGACATGGCACACACACCTCGAGCACAGCTGCAGGAAATTTTGTGAAAGGTGCCAATGTGTATGGGAACGCTAAAGGCACTGCGGTTGGGATTGCCCCTCTTGCTCACCTGGCCATGTATAAGGTCTGTGATAATGATTGCTCGGAAAGTGCCATTTTAGCTGGCATGGATGAAGCAATTGATGATGGAGTAGATATCATGTCCCTTTCCCTGGGTGGATCTAGCAGGCCATTCTATTATGATGTGATTGCACTCGGGGCATACAGTGCAGCAAAAAGAGGTATTCTTGTAAGTTGCTCTGCAGGTAATGGTGGTCCATCCCATAGCACTTTATCAAACGAAGCTCCGTGGATTCTGACAGTAGGTGCAAGCACTATTGACAGGGAGCTTAAGGCCACTGTTATGCTTGGAGACCAAAAACTATTTGAGGGTGAATCAGTATTTAGTCCTAAGGTTCCGGATTCCTCATTTTACCCTTTGATTGACCCTTCACTGAATGCAACCCACATAGGCAGCCGTTTTTGCGAACCAGGTACTCTGAGTGACCCCAAATTTAAAGGCAAAATTGTTGTGTGCATGGCAGGTGGTTATGTATCCACGATTGGAAAAGGACAAGTTGTAAAGGATGCTGGAGGAGTTGGCATGATTCTTGTTAGTATCCCTGAGTATGGTTTCAGTAAGTTTGCCGATCCTCACGTCCTTCCAGCTCTGTATATTACATTCAATGATGGTATGGAGATTCTTCAATACATCAACTCAACATCAGAACCAACTG-CAAGAAT</genome_strand>
        <mrna_strand>AAAGACTTACCCACTAAACAGTGAGTCACCAAAAGATGAGGCTGGACATGGCACACACACCTCGAGCACAGCTGCAGGAAATTTTGTGAAAGGTGCCAATGTGTATGGGAACGCTAAAGGCACTGCGGTTGGGATTGCCCCTCTTGCTCACCTGGCCATGTATAAGGTCTGTGATAATGATTGCTCGGAAAGTGCCATTTTAGCTGGCATGGATGAAGCAATTGATGATGGAGTAGATATCATGTCCCTTTCCCTGGGTGGATCTAGCAGGCCATTCTATTATGATGTGATTGCACTCGGGGCATACAGTGCAGCAAAAAGAGGTATTCTTGTAAGTTGCTCTGCAGGTAATGGTGGTCCATCCCATAGCACTTTATCAAACGAAGCTCCGTGGATTCTGACAGTAGGTGCAAGCACTATTGACAGGGAGCTTAAGGCCACTGTTATGCTTGGAGACCAAAAACTATTTGAGGGTGAATCAGTATTTAGTCCTAAGGTTCCGGATTCCTCATTTTACCCTTTGATTGACCCTTCACTGAATGCAACCCACATAGGCAGCCGTTTTTGCGAACCAGGTACTCTGAGTGACCCCAAATTTAAAGGCAAAATTGTTGTGTGCATGGCAGGTGGTTATGTATCCACGATTGGAAAAGGACAAGTTGTAAAGGATGCTGGAGGAGTTGGCATGATTCTTGTTAGTATCCCTGAGTATGGTTTCAGTAAGTTTGCCGATCCTCACGTCCTTCCAGCTCTGTATATTACATTCCATGATGGTATGGAGATTCCTTCATACATCAACTCAACATCAAAATCAACTGCCAAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553069" ref_strand="-" ref_description="SGN-E553069 [cTSB-5-O7]">
      <seq>cccccccaggggggaaagggggccgcccccccccccccatattttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttggtacaaattcatgtagtacttaaacattttgatattgtgaaactcgtacaagtgatgaaaatgtaatgtgaataacttgttgtcacatataattcaacaacttctattggaatcactgacataaaacattgtttcaataactaaaatcagtagaaagaaacacataactagaaaccaattgtagactctagcacaacagcaattggacttcttacagagtgcttctcactagtccatttcaagaatccttcaataacaccgccatttgttctgttgactcttttcgtaaacgtcactttgtatttcaacttctggttcaacttggagaatttcagagtagaaggcttgacagtcacggaaattccgggtggtgaagctacttccacactgtaagatgacttagcttccccgacgttagtcactgttcttgtatatgtctgagaaacttctccgagtgtgatggagaatgaaggataatttagttgtgcttcaggaatgcttttcacttccctacaatccactttgcgttgcaggaggttgcccacctgtcgatttgtgtaatttaaaccacacaggtaaggcaggtagtccttaaatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="65288" stop="96757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94230" g_stop="94263" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.588"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94264" i_stop="94348" i_length="85">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94349" g_stop="94379" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="65" r_length="31" r_score="0.516"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94380" i_stop="94756" i_length="377">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.240" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94757" g_stop="94774" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="83" r_length="18" r_score="0.500"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94775" i_stop="95307" i_length="533">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.230" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95308" g_stop="95321" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="97" r_length="14" r_score="0.429"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95322" i_stop="95846" i_length="525">
            <donor d_prob="0.752" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95847" g_stop="96457" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="708" r_length="611" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E553069" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553069" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94230" e_stop="94263"/>
          <exon e_start="94349" e_stop="94379"/>
          <exon e_start="94757" e_stop="94774"/>
          <exon e_start="95308" e_stop="95321"/>
          <exon e_start="95847" e_stop="96457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGCCAGGTGAGCAAGAGGGGCAATCCCAACCGCAGTGCCTTTAGCGTTCCCATACACATTGGCACCTTTCACAAAATTTCCTGCAGCTGTGCTCGAGGTGTGTGTGCCATGTCCAGCCTCATCTTTTGGTGACTCACTGTTTAGTGGGTAAGTCTTTGCACCAATGAGCTTGTTGTTACACTTTCCAGTGAAATTCGAATCACACTTTCCCTTCCATTTAGCAGGTGGAGGAGGCATTCCTTCGTCACTAAATGAAGGATGGTCAGGGGTAATCCCGGTGTCGAAGAGTCCAATAATCACACCTTCTCCATAGTTGTCATCGCTCCACAAGCCAACGTTCTGTTGCAATTCAAGAAAACTCGGACTATGAGTAGTGTGCAAGGACAATATCCTCTGAGGCCACGCAAATATAAATCCTGGTTTCTTCTCCATTTCCTTCACTTGCTTAGCTGACAATCTAGCAGCAAAGCCTATGATAACATTATGATACGAATATATCAACTGTGGCTTTTCATCTGAGCTAGCGGTTTCTATGGTCTTTGGCATGAAAGACTTGTACCAGCTCTCCAAATCCATTCTTGACGGTTGAGTGGAAATTTGGCTTTCTGGTGATTCGACTTGAACTATGTAAGTCTCCAAATCGCTCTGCATACTATGACATGAAAAACAAGCAAGTATAGAGAAAAAAAGAACAAAAAATATTTTCATTGTTGCAAATATTGAACTAATAATGTATACTTAGGAAAGTGGAGTTTGATGTTTTTTGCATTGTGACTACTACTAGTATTTATAGTGTACTTTGGCCTCTCAAATATTTGATTGTTTAATAAAGTATTATTGTGTGTTTAAGGAACTAAAGTTGAATCAGCAATTAAGAAAGTAATAAAAAGGAAAAGATGGTGATGTGAATTAGTTAGTCTAATTGAACATTTTCCTAGAAATAATTAGTGTTAATGACCATGTAACAAAGCTTAATTCTCATAAACTACTTCTTAATTAAGCACAAATGTCCACTTGTAAAGCTGTTAGTTTAACTATATTTGGGGTATTGCCAATGGTGATTGTTTTGATTAAGAACTTCTAATTCTGGTAATTTGATTTGACAAACACGCTCCAGAAGCTTTCAATATCTTTTGCTTGTTAAATCAGTTATCAATTATGATTTTTAGTGACCATTTCTTGTTGTCTTAATCAAAAATCACCCTTTATAGAATGTTAGTTAGTACGCGGTTTGATAATAATTGCACATTTTCCTAATAATGATTAGTATTAATGACCATACGCCAAAGCTTGATTCTCATAACAATCTTCTTAATTAAGAACAAATTTGCATTTGCAAAGCTACTAGTTTAACTAAATATTGGGCTACTAACATTACATGTTGATGAATGATGACTGTTATTAACACCTTTTACTTGTCAAAACAGTCCTTAGGGGATCGGATTCAGCTTTTATGATCACCGTCTTTTTGTCTTAGTCGATCATCACCCATTATTGAATGTAAATCAGTACACACTATGATACACCCTATAATAAGACTGTGTATAATAGATCCTTGTGGTCCGTCCCTTCCATACACTCACACACACAGAGAGGGCTTAGTGCACTGAGCTGCTCTTTTTTTGGTACAAATTCATGTAGTACTTAAACATTTTGATATTGTGAAACTCGTACAAGTGATGAAAATGTAATGTGAATAACTTGTTGTCACATATAATTCAACAACTTCTATTGGAATCACTGACATAAAACATTGTTTCAATAACTAAAATCAGTAGAAAGAAACACATAACTAGAAACCAATTGTAGACTCTAGCACAACAGCAATTGGACTTCTTACAGAGTGCTTCTCACTAGTCCATTTCAAGAATCCTTCAATAACACCGCCATTTGTTCTGTTGACTCTTTTCGTAAACGTCACTTTGTATTTCAACTTCTGGTTCAACTTGGAGAATTTCAGAGTAGAAGGCTTGACAGTCACGGAAATTCCGGGTGGTGAAGCTACTTCCACACTGTAAGATGACTTAGCTTCCCCGACGTTAGTCACTGTTCTTGTATATGTCTGAGAAACTTCTCCGAGTGTGATGGAGAATGAAGGATAATTTAGTTGTGCTTCAGGAATGCTTTTCACTTCCCTACAATCCACTTTGCGTTGCAGGAGGTTGCCCACCTGTCGATTTGTGTAATTTAAACCACACAGGTAAGGCAGGTAGTCCTTAAATGGG</genome_strand>
        <mrna_strand>CCCCCCCAGGGGGGAAAGGGGGCCGCCCCCCCCC.....................................................................................CCCCATATTTTTTTTTTTTTTTTTTTTTTTT.........................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTGGTACAAATTCATGTAGTACTTAAACATTTTGATATTGTGAAACTCGTACAAGTGATGAAAATGTAATGTGAATAACTTGTTGTCACATATAATTCAACAACTTCTATTGGAATCACTGACATAAAACATTGTTTCAATAACTAAAATCAGTAGAAAGAAACACATAACTAGAAACCAATTGTAGACTCTAGCACAACAGCAATTGGACTTCTTACAGAGTGCTTCTCACTAGTCCATTTCAAGAATCCTTCAATAACACCGCCATTTGTTCTGTTGACTCTTTTCGTAAACGTCACTTTGTATTTCAACTTCTGGTTCAACTTGGAGAATTTCAGAGTAGAAGGCTTGACAGTCACGGAAATTCCGGGTGGTGAAGCTACTTCCACACTGTAAGATGACTTAGCTTCCCCGACGTTAGTCACTGTTCTTGTATATGTCTGAGAAACTTCTCCGAGTGTGATGGAGAATGAAGGATAATTTAGTTGTGCTTCAGGAATGCTTTTCACTTCCCTACAATCCACTTTGCGTTGCAGGAGGTTGCCCACCTGTCGATTTGTGTAATTTAAACCACACAGGTAAGGCAGGTAGTCCTTAAATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576028" ref_strand="+" ref_description="SGN-E576028 [59181]">
      <seq>ctttatatctgcgttgcctcagaggatattgtctttgcacactacacatactccgagttttcttggattgcaacagaacattggcttgtggagggatgctaattatggaaaaggtgtgatcattggagtcttggacaccgggattgcccctgaccatccttcatttagcgacaaaggaatgcctcctccgcctgctaaatggaaaggcaagtgtgaatcgaatttcactaaaaagtgtaacaacaagctcattggtgcgaggactttcccattaggcagtgattcaccgatagatgattttggacatggtacacacaccgccagcacagctgctggtggtttcgtgaaaggtgccaatgtgaatggttatgctaaaggcactgctgttgggattgccccgcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="-" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="98269" stop="97265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97969" g_stop="97565" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="-" ref_id="SGN-E576028" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97969" e_stop="97565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATATCTGCGTGGCCTCAGAGGATATTGTCTTTGCACACTACACATACTCCAAGTTTTCTTGGATTGCAACAGAATGTTGGCTTGTGGAGGGATGCTAACTATGGAAAAGGTGTGATCATTGGAGTCATAGACACCGGGATTGATCCTGACCATCCTTCATTCAGCGACAAAGGAATGCCTCCTCCACCTGCTAAATGGAAGGGCAAATGTGAGTCGAATTTCACTAAAAAGTGTAACAACAAGCTCATTGGTGCGAGGACTTTCCCATTAGGCAGTGATTCACCGATAGATGAGGCTGGACATGGTACACACACAGCCAGCACAGCTGCTGGTGGTTTTGTGAAAGGTGCTAATGTGAACGGTAATGCTAAAGGTACTGCTGTTGGGGTTGCTCCGCTTGC</genome_strand>
        <mrna_strand>CTTTATATCTGCGTTGCCTCAGAGGATATTGTCTTTGCACACTACACATACTCCGAGTTTTCTTGGATTGCAACAGAACATTGGCTTGTGGAGGGATGCTAATTATGGAAAAGGTGTGATCATTGGAGTCTTGGACACCGGGATTGCCCCTGACCATCCTTCATTTAGCGACAAAGGAATGCCTCCTCCGCCTGCTAAATGGAAAGGCAAGTGTGAATCGAATTTCACTAAAAAGTGTAACAACAAGCTCATTGGTGCGAGGACTTTCCCATTAGGCAGTGATTCACCGATAGATGATTTTGGACATGGTACACACACCGCCAGCACAGCTGCTGGTGGTTTCGTGAAAGGTGCCAATGTGAATGGTTATGCTAAAGGCACTGCTGTTGGGATTGCCCCGCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576028" ref_strand="+" ref_description="SGN-E576028 [59181]">
      <seq>ctttatatctgcgttgcctcagaggatattgtctttgcacactacacatactccgagttttcttggattgcaacagaacattggcttgtggagggatgctaattatggaaaaggtgtgatcattggagtcttggacaccgggattgcccctgaccatccttcatttagcgacaaaggaatgcctcctccgcctgctaaatggaaaggcaagtgtgaatcgaatttcactaaaaagtgtaacaacaagctcattggtgcgaggactttcccattaggcagtgattcaccgatagatgattttggacatggtacacacaccgccagcacagctgctggtggtttcgtgaaaggtgccaatgtgaatggttatgctaaaggcactgctgttgggattgccccgcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="101810" stop="102811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102110" g_stop="102511" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E576028" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102110" e_stop="102511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATATCTGCGTGGCCTCAGAGGATATTGTCTTTGCATACTACACATACTCCGAGTTTTCTTGGTTTGCAACAGAACGTTGGCTTGTGGAGGGATGCTAACTATGGAAAAGGTGTGATCGTTGGAGTCTTGGACACCGGGATTTCCCCTGACCATCCTTCATTTAGCGACAAAGGAATGCCTCCTCCGCCTGCTAAATGGAAGGGAAAGTGTGAATCGAACTTCACTACAAAGTGTAACAACAAGCTCATTGGCGCGAGGACTTT--C-GTAAACAGTGATTCACCGATAGATGGTAATGGACATGGAACACACACAGCTAGTACAGCTGCTGGGGGGTTTGTGAAAGGTGCTAATGTGTATGGGAATGCTAAGGGTACCGCGGTTGGGATTGCCCCTCTTGC</genome_strand>
        <mrna_strand>CTTTATATCTGCGTTGCCTCAGAGGATATTGTCTTTGCACACTACACATACTCCGAGTTTTCTTGGATTGCAACAGAACATTGGCTTGTGGAGGGATGCTAATTATGGAAAAGGTGTGATCATTGGAGTCTTGGACACCGGGATTGCCCCTGACCATCCTTCATTTAGCGACAAAGGAATGCCTCCTCCGCCTGCTAAATGGAAAGGCAAGTGTGAATCGAATTTCACTAAAAAGTGTAACAACAAGCTCATTGGTGCGAGGACTTTCCCATTAGGCAGTGATTCACCGATAGATGATTTTGGACATGGTACACACACCGCCAGCACAGCTGCTGGTGGTTTCGTGAAAGGTGCCAATGTGAATGGTTATGCTAAAGGCACTGCTGTTGGGATTGCCCCGCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453027" ref_strand="+" ref_description="SGN-E453027 [cSTS-18-L19]">
      <seq>gtttctctcaaaatcaaaaactgaaaaaaaaattaaataaaaaatgagtattaaatttcttctttttcagcagaatcatcaaggcttcaagattcttgattctccttcacttcacaaatctctaccttgttttcatcaacatccaattgtttcttttcccaagaaatgcttccactcctcaggggtacgattggtggggtttccatcagctatacaatctacattgccaaatggtaattcaggactgttggttactagatgtatctcagaaagtttctcagatccgcttgggcctaatgactttgaatcacttgagaatttgaaacaaaaagagaacgcctttttgacaattttgaagggagcaaactctttcctgccccatgtggttcttgctagcacaattttggctcttatctatccaccttcttttacttggtttaccaacaggtactatgcccctgcattaggatttttaatgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="111470" stop="116205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111770" g_stop="111951" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111952" i_stop="113622" i_length="1671">
            <donor d_prob="0.985" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113623" g_stop="113670" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="230" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113671" i_stop="113756" i_length="86">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113757" g_stop="113842" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="316" r_length="86" r_score="0.930"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113843" i_stop="114648" i_length="806">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114649" g_stop="114779" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="447" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114780" i_stop="115870" i_length="1091">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115871" g_stop="115905" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="482" r_length="35" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E453027" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111770" e_stop="111951"/>
          <exon e_start="113623" e_stop="113670"/>
          <exon e_start="113757" e_stop="113842"/>
          <exon e_start="114649" e_stop="114779"/>
          <exon e_start="115871" e_stop="115905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTCTCAAAATCAAAAACTGAATTTTTTTTTAAATAAAAAATGAGTATTAAATTTCTTCTTTTTCAGCAGAATCATCAAGGCTTCAAGATTCTTGATTCTCCTTCACTTCACAAATCTCTACCTTGTTTTCATCAACACCCAGTTGTTTCTTTTACCAAGAAATGCTTCCACTCCTCAGGTTTGTTTGTTTTTATACTTACAAGTATTTATAAAAAAAAGGAGAGATTTTTATGATTGTTTTTCAATATTCATGTGTATTTATGCTTACCCTTTTGATAGTTTTGTCCAATTTGGGATTCTTGATGTGGTATCATTGATGAAAGAAAAAAGTGATTTTGTGAATTTTTTTGTAATATCAAGTGTATTTGTACTGCCCCTTTTTTAATGAATTAGTTCAACTTGTACTTGAGTTCTTGAAAGGAATTCCCTTAATTATACAATCTTTATTCTTTTTGGGGAAATTGACATAAATAGTTGCTGGCCCAAAAAAAAAAATTGCCATAATATTTGTATAGAGCATGTGTATTATCTATAGCTGATGTAGACATTTTTTGCTGAGCAACCAAATCTGTAACTTCCCTCTTTCTCTTTTTACCTCAATAGTGTATTATTTTGCTTAAAGTTTGAATCTTTTTGCTTCTCAAAGTAAAACTGTACTTCGGTAAATGGGTTCTTGAAGGGGGTATGATTGATGAAAGAAAAAAGAGATTTTGTGATATATTTTTCAGTATCAAGTGTATTTATAATGCTATTAGTGATGAATTAATCTAATTTGTACTTTTGTGCTTGAAGGAGTTTCCCCCATCTATACAACAGCAAGTAGGTGTGTTTTATTTTGCTCAATTGTAATCTATTTTCCTCAAAGTTTGAATCTTTTTGCTTCTCAACCGTGCAAAGTACTTAGTTCTTTTTGCTTCTCAATAGTCAAACTGTACTTAGGTTCTTGAAGGGGTATGATGTTGAAGGAAAAATAGATTTTTTTTTTTTTGTATAAAGTGTCGGTCGTAGTATTAGCATATTCATTTAGTCTTTGGTTTAGAGTTTCTGATTATCATATGTGGTTTATTGGGTTTAGGTGATTGCACCTTGTTGTTCATGTTATGGTTTCTTGCATATATGCTCTGTACTATTTGCTATTAGCTCTCATGTTTTTCTTTTTGATTACTGCTTTGATTTTCTTGAGCAAAGGGCCTTTCGGCAACAGCCTATCTACCTCGGAGAGGTAGGGGTAAGGTCTACGTACACCCTACCCTTCCTAGACCCCCCACTTTGTGGATTTCATTGGGGTTTTTTTGTTGTTTTTCATATCAAGTGTATTTTTACTGCCCCTTTAAAAAAAATTTAGTTCAATTGTAATCTATTTTGCTCAAATTTTGAATCTTTTTGCTTCTCAAAGTACAGTTGATAATGTGCTCTTTACTTTTAAGTATAAAAAGAAAAAAAGAAAAAAAATTATGATCTTTCTTCAATATCAAGTTTATTTCTACTGCCCCTTTTGATATATTAGTCCAACTTGTACTTGTGTTCCTTGATTCTTGAAGGGGTATGATTGGTGAGGGTTTCTTCAACTATAAAATCCACATTGCCAATTAGGTGTTTTTTCTGAAAATTCAATATGTTCTATTTTACTCAAAGTTGAGATCCTTTTGCTTCTCAAGTTTAGTTGATAATGTACTTTATTTAGGTCATGAATGTGATCTTTTTATATAGGTGGTAATTCAAGCGGTTGTTTAGTAGATGTATCTCAGAAAAGTTATCAGATTTTGTGATTGTTTTATTTTTCAGTATCAAGTGTGTTTCTACTATCCCTTTTAATGAATTAGTCCAATTTGTATTTGGGTTCTTGAAGGGGTACGATTGGTGGGGTTTCCATCAGCTATACAATCCACATTGCCAAGTAAGTGATTTCTAAACTCAATTGTAATACTTTGCTCAAAGTTTTAGTTGATAATGTCTTTTTTCTTGCTCATGAATGTGATCTTTTTCGGTATTCAGGACTATTGGTTACTAGATGTATCTCAGAAAGTTTCTCAGATCCACTTGGGCCTAATGACTTTGAATCACTTGAGGTTTTCCATTTTTACATCTGGAGCCATTTACTCAAAGTTCAATTATATGCTTTTGTGAATTTGACTTGTATTTGTATGTGGAATCGAGCAACGAAAGACTTGTTAATTTATTGGTGACAACCATTTTTCTTTGAGAGGTATGGCTATGAATACTATCATTGCATAAAAAAACGAGTTTGATATAGAAAATTCTCTAGCATCCAAGGGTGTGGTCTAGCGGACAATAAAATGGGAGAGCTAGAAGATACCTTACGTGATTTTTTCCCCCATTTATTTAAGCCTTAGCCAGCAGAGTTATCCGATACTTGTCTTGGTGAGAGGTAGAAGATACTGAGTGGAATAGTCGAGGTGTGTGAGGTGTGTGCAAGCTTTCCCAGACATCACCCTTATAAAACATAGAAAAAAGTAATAGAAAATTCTCTATGTATGTGGATAAAGTTCCAGATATGAGAAGTAGTTGATATAGGAAGCAATTTGTTTTGGTTCCTAGCCATTTCAAGCTGATGTACTGACTGTTATTACTAATTGAAGACATTTCGATGTGAGGGCAATGTTCTCTGGTTTGATTACATTTCTAATGTTTCCAATGCTTCTTTCCCTTGAGATTGTGAATCAAAGAGGTTGATTGGCTCATATTTTAATTCTTAAACCTCTCGATATTTTTGAAAAGGAAAAGAAACATAATAGGGAAAAGGGGGTTATGTTGTTTCCTTGAATGTTTCGAAGCCGACATTTGATTTGTTGGATTTGAAGTATTTGCATTTAAGTTTTGTTTTTTTTTAACAATAGACATTTTGTTATTACAGAATTTGAAACAAAAAGAGAACGCCTTTTTGACAATTTTGAAGGGAGCAAACTCTTTTCTGCCCCATGTGGTTCTTGCTAGCACAATTTTGGCTCTTATCTATCCACCTTCTTTTACTTGGTTTACCAACAGGTTTGTCTATCATCCAATTGGTGCTTATTTTCTCATCTATTTTGTTCTATCCCTCTAGCATCTCATGCTATCTTACTTTTCACCTTGCAAAAAGTTTTGCGATAGGTCTGATAACTCTTTCAGAAGTTCGCAGGGACACATAACGCTTGTTTCTGTATTTTGATCTTATTAATTGATACTGTTGTCTGTTAGACAAAGAATTCAATTGACAAGTAATCATTTTCCCTGTTTGACGTATTAAGTAACATTGGTTACTGCATGAAGCAAGTGCATTTATATTTTGTTAAAAGCAAGCAAGATCATTTTTAATTCTAATTTGGAGCTTAAGTTCTACTTTTGGAGGTGTTATATACTGTCTATGCAAATTAGTTAGAATAGAAGAAAATATTTCCTATGTATTCGTGAACTAGGTGGCATCTTTATGTTGTTGAACTACATAAATTAACAGTTGTAAGATACTTTTGAGTCTTGTAATACACATTATTAAAGCTAATAATTCGAAGAATTTCAAAATGTATGCATTTGATCACTTTCTGAAAGAAGAGTTTTGTTCAGACTTTTGTTTGTTTGGATTACTTATCATGTATACTAGAATCAACAACTCATTCCAAGGAGAAACTCGTATAAATTTTGCCGGGACAAATCATTAATTGCATTCTAGAGGACTTATATCTCTCTGCTAGACTTGGTCAAAGTATCGTGGCTTGATCAGGTCATTTGAATTTATCCTTATAAATGTATACTGAGGCTTCTATAACTAAACCAATTGGCATTAGTTGTAGCAGGAGGTGTGGTAGAGACCCGTGCCAGAGGTCAGAGTAATTCCTTTATTGAAAGTTTTCCGTGGATATATCTATTTCTTTTACCAATTTATCCCCTCTAGAAAAGGATGGAGGTGTAGAATTGGATCTTGGCAAAAGTCTGTCATTCAATATTTGCACCGATTTGGTCTCACGTTGTCTATCTAGGATAGTTAGAGAAAGGTATTATGTGACAAATAGTTGCAGAGTGCATACCAAAAAGTCTAAACTGCTTAGTTTTTCACCTCATCGTATGGTCTCATTTTTAACCGTGATGTTTGCCGTTTCTAGGTACTATGCCCCTGCATTAGGATTTTTAATGTTCG</genome_strand>
        <mrna_strand>GTTTCTCTCAAAATCAAAAACTGAAAAAAAAATTAAATAAAAAATGAGTATTAAATTTCTTCTTTTTCAGCAGAATCATCAAGGCTTCAAGATTCTTGATTCTCCTTCACTTCACAAATCTCTACCTTGTTTTCATCAACATCCAATTGTTTCTTTTCCCAAGAAATGCTTCCACTCCTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTACGATTGGTGGGGTTTCCATCAGCTATACAATCTACATTGCCAA......................................................................................ATGGTAATTCAGGACTGTTGGTTACTAGATGTATCTCAGAAAGTTTCTCAGATCCGCTTGGGCCTAATGACTTTGAATCACTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGAAACAAAAAGAGAACGCCTTTTTGACAATTTTGAAGGGAGCAAACTCTTTCCTGCCCCATGTGGTTCTTGCTAGCACAATTTTGGCTCTTATCTATCCACCTTCTTTTACTTGGTTTACCAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTATGCCCCTGCATTAGGATTTTTAATGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204749" ref_strand="+" ref_description="SGN-E204749 [cLEC-14-N14]">
      <seq>ttctctcaaaatcaaaaactgaatttttttttaaataaaaaatgagtattaaatttcttctttttcagcagaatcatcaaggcttcaagattcttgattctccttcacttcacaaatctctaccttgttttcatcaacacccagttgtttcttttaccaagaaatgcttccactcctcaggggtacgattggtggggtttccatcagctatacaatccacattgccaagactattggttactagatgtatctcagaaagtttctcagatccacttgggcctaatgactttgaatcacttgaggttttccatttttacatctggagccatttactcaaagttcaattatatgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="111472" stop="114194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111772" g_stop="111951" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111952" i_stop="113622" i_length="1671">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113623" g_stop="113670" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="228" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113671" i_stop="113768" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113769" g_stop="113894" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="354" r_length="126" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E204749" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111772" e_stop="111951"/>
          <exon e_start="113623" e_stop="113670"/>
          <exon e_start="113769" e_stop="113894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCAAAATCAAAAACTGAATTTTTTTTTAAATAAAAAATGAGTATTAAATTTCTTCTTTTTCAGCAGAATCATCAAGGCTTCAAGATTCTTGATTCTCCTTCACTTCACAAATCTCTACCTTGTTTTCATCAACACCCAGTTGTTTCTTTTACCAAGAAATGCTTCCACTCCTCAGGTTTGTTTGTTTTTATACTTACAAGTATTTATAAAAAAAAGGAGAGATTTTTATGATTGTTTTTCAATATTCATGTGTATTTATGCTTACCCTTTTGATAGTTTTGTCCAATTTGGGATTCTTGATGTGGTATCATTGATGAAAGAAAAAAGTGATTTTGTGAATTTTTTTGTAATATCAAGTGTATTTGTACTGCCCCTTTTTTAATGAATTAGTTCAACTTGTACTTGAGTTCTTGAAAGGAATTCCCTTAATTATACAATCTTTATTCTTTTTGGGGAAATTGACATAAATAGTTGCTGGCCCAAAAAAAAAAATTGCCATAATATTTGTATAGAGCATGTGTATTATCTATAGCTGATGTAGACATTTTTTGCTGAGCAACCAAATCTGTAACTTCCCTCTTTCTCTTTTTACCTCAATAGTGTATTATTTTGCTTAAAGTTTGAATCTTTTTGCTTCTCAAAGTAAAACTGTACTTCGGTAAATGGGTTCTTGAAGGGGGTATGATTGATGAAAGAAAAAAGAGATTTTGTGATATATTTTTCAGTATCAAGTGTATTTATAATGCTATTAGTGATGAATTAATCTAATTTGTACTTTTGTGCTTGAAGGAGTTTCCCCCATCTATACAACAGCAAGTAGGTGTGTTTTATTTTGCTCAATTGTAATCTATTTTCCTCAAAGTTTGAATCTTTTTGCTTCTCAACCGTGCAAAGTACTTAGTTCTTTTTGCTTCTCAATAGTCAAACTGTACTTAGGTTCTTGAAGGGGTATGATGTTGAAGGAAAAATAGATTTTTTTTTTTTTGTATAAAGTGTCGGTCGTAGTATTAGCATATTCATTTAGTCTTTGGTTTAGAGTTTCTGATTATCATATGTGGTTTATTGGGTTTAGGTGATTGCACCTTGTTGTTCATGTTATGGTTTCTTGCATATATGCTCTGTACTATTTGCTATTAGCTCTCATGTTTTTCTTTTTGATTACTGCTTTGATTTTCTTGAGCAAAGGGCCTTTCGGCAACAGCCTATCTACCTCGGAGAGGTAGGGGTAAGGTCTACGTACACCCTACCCTTCCTAGACCCCCCACTTTGTGGATTTCATTGGGGTTTTTTTGTTGTTTTTCATATCAAGTGTATTTTTACTGCCCCTTTAAAAAAAATTTAGTTCAATTGTAATCTATTTTGCTCAAATTTTGAATCTTTTTGCTTCTCAAAGTACAGTTGATAATGTGCTCTTTACTTTTAAGTATAAAAAGAAAAAAAGAAAAAAAATTATGATCTTTCTTCAATATCAAGTTTATTTCTACTGCCCCTTTTGATATATTAGTCCAACTTGTACTTGTGTTCCTTGATTCTTGAAGGGGTATGATTGGTGAGGGTTTCTTCAACTATAAAATCCACATTGCCAATTAGGTGTTTTTTCTGAAAATTCAATATGTTCTATTTTACTCAAAGTTGAGATCCTTTTGCTTCTCAAGTTTAGTTGATAATGTACTTTATTTAGGTCATGAATGTGATCTTTTTATATAGGTGGTAATTCAAGCGGTTGTTTAGTAGATGTATCTCAGAAAAGTTATCAGATTTTGTGATTGTTTTATTTTTCAGTATCAAGTGTGTTTCTACTATCCCTTTTAATGAATTAGTCCAATTTGTATTTGGGTTCTTGAAGGGGTACGATTGGTGGGGTTTCCATCAGCTATACAATCCACATTGCCAAGTAAGTGATTTCTAAACTCAATTGTAATACTTTGCTCAAAGTTTTAGTTGATAATGTCTTTTTTCTTGCTCATGAATGTGATCTTTTTCGGTATTCAGGACTATTGGTTACTAGATGTATCTCAGAAAGTTTCTCAGATCCACTTGGGCCTAATGACTTTGAATCACTTGAGGTTTTCCATTTTTACATCTGGAGCCATTTACTCAAAGTTCAATTATATGCTT</genome_strand>
        <mrna_strand>TTCTCTCAAAATCAAAAACTGAATTTTTTTTTAAATAAAAAATGAGTATTAAATTTCTTCTTTTTCAGCAGAATCATCAAGGCTTCAAGATTCTTGATTCTCCTTCACTTCACAAATCTCTACCTTGTTTTCATCAACACCCAGTTGTTTCTTTTACCAAGAAATGCTTCCACTCCTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTACGATTGGTGGGGTTTCCATCAGCTATACAATCCACATTGCCAA..................................................................................................GACTATTGGTTACTAGATGTATCTCAGAAAGTTTCTCAGATCCACTTGGGCCTAATGACTTTGAATCACTTGAGGTTTTCCATTTTTACATCTGGAGCCATTTACTCAAAGTTCAATTATATGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419012" ref_strand="+" ref_description="SGN-E419012 [STM-28-F14]">
      <seq>ctcaaaatcaaaaactgaaaaaaaaaattaaataaaaaatgagtattaaatttcttctttttcagcagaatcatcaaggcttcaagattcttgattctccttcacttcacaaatctctaccttgttttcatcaacacccaattgtttcttttcccaagaaatgcttccactcctcaggggtacgattggtggggtttccatcagctatacaatctacattgccaaatggtaattcaggactgttggttactagatgtatctcagaaagtttctcagatccgcttgggcctaatgactttgaatcacttgagaatttgaaacaaaaagagaacgcctttttgacaattttgaagggagcaaactctttcctgccccatgtggttcttgctagcacaattttggctcttatctatccaccttcttttacttggtttaccaacaggtactatgcccctgcattaggatttttaatgtttgctgttggagtcaattcaagtgaaaaggactttcttgaagctttcaagaaacccgctgccatttttgctggttatatcggtcaatttgctctgaagccactacttgggtatctttttggcacagttgcaatggccgtatttggtcttccaacttccttagctgcagggattatgttgacctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="111502" stop="116459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111776" g_stop="111951" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111952" i_stop="113622" i_length="1671">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113623" g_stop="113670" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="225" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113671" i_stop="113756" i_length="86">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113757" g_stop="113842" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="311" r_length="86" r_score="0.930"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113843" i_stop="114648" i_length="806">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114649" g_stop="114779" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="442" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114780" i_stop="115870" i_length="1091">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115871" g_stop="116064" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="636" r_length="194" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="116065" i_stop="116135" i_length="71">
            <donor d_prob="0.885" d_score="0.94"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="116136" g_stop="116159" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="660" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E419012" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111776" e_stop="111951"/>
          <exon e_start="113623" e_stop="113670"/>
          <exon e_start="113757" e_stop="113842"/>
          <exon e_start="114649" e_stop="114779"/>
          <exon e_start="115871" e_stop="116064"/>
          <exon e_start="116136" e_stop="116159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAAATCAAAAACTG-AATTTTTTTTTAAATAAAAAATGAGTATTAAATTTCTTCTTTTTCAGCAGAATCATCAAGGCTTCAAGATTCTTGATTCTCCTTCACTTCACAAATCTCTACCTTGTTTTCATCAACACCCAGTTGTTTCTTTTACCAAGAAATGCTTCCACTCCTCAGGTTTGTTTGTTTTTATACTTACAAGTATTTATAAAAAAAAGGAGAGATTTTTATGATTGTTTTTCAATATTCATGTGTATTTATGCTTACCCTTTTGATAGTTTTGTCCAATTTGGGATTCTTGATGTGGTATCATTGATGAAAGAAAAAAGTGATTTTGTGAATTTTTTTGTAATATCAAGTGTATTTGTACTGCCCCTTTTTTAATGAATTAGTTCAACTTGTACTTGAGTTCTTGAAAGGAATTCCCTTAATTATACAATCTTTATTCTTTTTGGGGAAATTGACATAAATAGTTGCTGGCCCAAAAAAAAAAATTGCCATAATATTTGTATAGAGCATGTGTATTATCTATAGCTGATGTAGACATTTTTTGCTGAGCAACCAAATCTGTAACTTCCCTCTTTCTCTTTTTACCTCAATAGTGTATTATTTTGCTTAAAGTTTGAATCTTTTTGCTTCTCAAAGTAAAACTGTACTTCGGTAAATGGGTTCTTGAAGGGGGTATGATTGATGAAAGAAAAAAGAGATTTTGTGATATATTTTTCAGTATCAAGTGTATTTATAATGCTATTAGTGATGAATTAATCTAATTTGTACTTTTGTGCTTGAAGGAGTTTCCCCCATCTATACAACAGCAAGTAGGTGTGTTTTATTTTGCTCAATTGTAATCTATTTTCCTCAAAGTTTGAATCTTTTTGCTTCTCAACCGTGCAAAGTACTTAGTTCTTTTTGCTTCTCAATAGTCAAACTGTACTTAGGTTCTTGAAGGGGTATGATGTTGAAGGAAAAATAGATTTTTTTTTTTTTGTATAAAGTGTCGGTCGTAGTATTAGCATATTCATTTAGTCTTTGGTTTAGAGTTTCTGATTATCATATGTGGTTTATTGGGTTTAGGTGATTGCACCTTGTTGTTCATGTTATGGTTTCTTGCATATATGCTCTGTACTATTTGCTATTAGCTCTCATGTTTTTCTTTTTGATTACTGCTTTGATTTTCTTGAGCAAAGGGCCTTTCGGCAACAGCCTATCTACCTCGGAGAGGTAGGGGTAAGGTCTACGTACACCCTACCCTTCCTAGACCCCCCACTTTGTGGATTTCATTGGGGTTTTTTTGTTGTTTTTCATATCAAGTGTATTTTTACTGCCCCTTTAAAAAAAATTTAGTTCAATTGTAATCTATTTTGCTCAAATTTTGAATCTTTTTGCTTCTCAAAGTACAGTTGATAATGTGCTCTTTACTTTTAAGTATAAAAAGAAAAAAAGAAAAAAAATTATGATCTTTCTTCAATATCAAGTTTATTTCTACTGCCCCTTTTGATATATTAGTCCAACTTGTACTTGTGTTCCTTGATTCTTGAAGGGGTATGATTGGTGAGGGTTTCTTCAACTATAAAATCCACATTGCCAATTAGGTGTTTTTTCTGAAAATTCAATATGTTCTATTTTACTCAAAGTTGAGATCCTTTTGCTTCTCAAGTTTAGTTGATAATGTACTTTATTTAGGTCATGAATGTGATCTTTTTATATAGGTGGTAATTCAAGCGGTTGTTTAGTAGATGTATCTCAGAAAAGTTATCAGATTTTGTGATTGTTTTATTTTTCAGTATCAAGTGTGTTTCTACTATCCCTTTTAATGAATTAGTCCAATTTGTATTTGGGTTCTTGAAGGGGTACGATTGGTGGGGTTTCCATCAGCTATACAATCCACATTGCCAAGTAAGTGATTTCTAAACTCAATTGTAATACTTTGCTCAAAGTTTTAGTTGATAATGTCTTTTTTCTTGCTCATGAATGTGATCTTTTTCGGTATTCAGGACTATTGGTTACTAGATGTATCTCAGAAAGTTTCTCAGATCCACTTGGGCCTAATGACTTTGAATCACTTGAGGTTTTCCATTTTTACATCTGGAGCCATTTACTCAAAGTTCAATTATATGCTTTTGTGAATTTGACTTGTATTTGTATGTGGAATCGAGCAACGAAAGACTTGTTAATTTATTGGTGACAACCATTTTTCTTTGAGAGGTATGGCTATGAATACTATCATTGCATAAAAAAACGAGTTTGATATAGAAAATTCTCTAGCATCCAAGGGTGTGGTCTAGCGGACAATAAAATGGGAGAGCTAGAAGATACCTTACGTGATTTTTTCCCCCATTTATTTAAGCCTTAGCCAGCAGAGTTATCCGATACTTGTCTTGGTGAGAGGTAGAAGATACTGAGTGGAATAGTCGAGGTGTGTGAGGTGTGTGCAAGCTTTCCCAGACATCACCCTTATAAAACATAGAAAAAAGTAATAGAAAATTCTCTATGTATGTGGATAAAGTTCCAGATATGAGAAGTAGTTGATATAGGAAGCAATTTGTTTTGGTTCCTAGCCATTTCAAGCTGATGTACTGACTGTTATTACTAATTGAAGACATTTCGATGTGAGGGCAATGTTCTCTGGTTTGATTACATTTCTAATGTTTCCAATGCTTCTTTCCCTTGAGATTGTGAATCAAAGAGGTTGATTGGCTCATATTTTAATTCTTAAACCTCTCGATATTTTTGAAAAGGAAAAGAAACATAATAGGGAAAAGGGGGTTATGTTGTTTCCTTGAATGTTTCGAAGCCGACATTTGATTTGTTGGATTTGAAGTATTTGCATTTAAGTTTTGTTTTTTTTTAACAATAGACATTTTGTTATTACAGAATTTGAAACAAAAAGAGAACGCCTTTTTGACAATTTTGAAGGGAGCAAACTCTTTTCTGCCCCATGTGGTTCTTGCTAGCACAATTTTGGCTCTTATCTATCCACCTTCTTTTACTTGGTTTACCAACAGGTTTGTCTATCATCCAATTGGTGCTTATTTTCTCATCTATTTTGTTCTATCCCTCTAGCATCTCATGCTATCTTACTTTTCACCTTGCAAAAAGTTTTGCGATAGGTCTGATAACTCTTTCAGAAGTTCGCAGGGACACATAACGCTTGTTTCTGTATTTTGATCTTATTAATTGATACTGTTGTCTGTTAGACAAAGAATTCAATTGACAAGTAATCATTTTCCCTGTTTGACGTATTAAGTAACATTGGTTACTGCATGAAGCAAGTGCATTTATATTTTGTTAAAAGCAAGCAAGATCATTTTTAATTCTAATTTGGAGCTTAAGTTCTACTTTTGGAGGTGTTATATACTGTCTATGCAAATTAGTTAGAATAGAAGAAAATATTTCCTATGTATTCGTGAACTAGGTGGCATCTTTATGTTGTTGAACTACATAAATTAACAGTTGTAAGATACTTTTGAGTCTTGTAATACACATTATTAAAGCTAATAATTCGAAGAATTTCAAAATGTATGCATTTGATCACTTTCTGAAAGAAGAGTTTTGTTCAGACTTTTGTTTGTTTGGATTACTTATCATGTATACTAGAATCAACAACTCATTCCAAGGAGAAACTCGTATAAATTTTGCCGGGACAAATCATTAATTGCATTCTAGAGGACTTATATCTCTCTGCTAGACTTGGTCAAAGTATCGTGGCTTGATCAGGTCATTTGAATTTATCCTTATAAATGTATACTGAGGCTTCTATAACTAAACCAATTGGCATTAGTTGTAGCAGGAGGTGTGGTAGAGACCCGTGCCAGAGGTCAGAGTAATTCCTTTATTGAAAGTTTTCCGTGGATATATCTATTTCTTTTACCAATTTATCCCCTCTAGAAAAGGATGGAGGTGTAGAATTGGATCTTGGCAAAAGTCTGTCATTCAATATTTGCACCGATTTGGTCTCACGTTGTCTATCTAGGATAGTTAGAGAAAGGTATTATGTGACAAATAGTTGCAGAGTGCATACCAAAAAGTCTAAACTGCTTAGTTTTTCACCTCATCGTATGGTCTCATTTTTAACCGTGATGTTTGCCGTTTCTAGGTACTATGCCCCTGCATTAGGATTTTTAATGTTCGCTGTTGGAGTCAATTCAAGTGAAAAGGACTTTCTTGAAGCTTTCAAGAAACCTGCTGCCATTTTTGCTGGTTATATCGGTCAATTTGCTTTGAAGCCACTACTCGGGTATCTTTTTGGCACAGTTGCAATGTCTGTATTGGGTCTTCCAACTTCCTTAGGTAAAATCTCAGACCCCTTTTTCAGGAAAGAAAATAGTATGCTGACTAAAGTTTTGTTATCTGTGTATCAGCTGCAGGGATTATGTTGACCTCTT</genome_strand>
        <mrna_strand>CTCAAAATCAAAAACTGAAAAAAAAAATTAAATAAAAAATGAGTATTAAATTTCTTCTTTTTCAGCAGAATCATCAAGGCTTCAAGATTCTTGATTCTCCTTCACTTCACAAATCTCTACCTTGTTTTCATCAACACCCAATTGTTTCTTTTCCCAAGAAATGCTTCCACTCCTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTACGATTGGTGGGGTTTCCATCAGCTATACAATCTACATTGCCAA......................................................................................ATGGTAATTCAGGACTGTTGGTTACTAGATGTATCTCAGAAAGTTTCTCAGATCCGCTTGGGCCTAATGACTTTGAATCACTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGAAACAAAAAGAGAACGCCTTTTTGACAATTTTGAAGGGAGCAAACTCTTTCCTGCCCCATGTGGTTCTTGCTAGCACAATTTTGGCTCTTATCTATCCACCTTCTTTTACTTGGTTTACCAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTATGCCCCTGCATTAGGATTTTTAATGTTTGCTGTTGGAGTCAATTCAAGTGAAAAGGACTTTCTTGAAGCTTTCAAGAAACCCGCTGCCATTTTTGCTGGTTATATCGGTCAATTTGCTCTGAAGCCACTACTTGGGTATCTTTTTGGCACAGTTGCAATGGCCGTATTTGGTCTTCCAACTTCCTTAG.......................................................................CTGCAGGGATTATGTTGACCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325965" ref_strand="+" ref_description="SGN-E325965 [cTOC-12-J8]">
      <seq>tgaatttttttttaaataaaaaatgagtattaaatttctggctttttgggcagaatcatcaaggcttcaagattcttgattctccttcacttcacaaatctctaccttgttttcatcaacacccagttgtttcttttaccaagaaatgcttccactcctcaggggtacgattggtggggtttccatcagctatacaatccacattgccaagactattggttactagatgtatctcagaaagtttctcagatccacttgggcctaatgactttgaatcacttgagaatttgaaacaaaaagagaacgcctttttgacaattttgaagggagcaaactcttttctgccccatgtggttcttgctagcacaattttggctcttatctatccaccttcttttacttggtttaccaacaggtactatgcccctgcattaggatttttaatgttcgctgttggagtcaattcaagtgaaaaggactttcttgaagctttcaagaaacctgctgccatttttgctggttatatcggtcaatttgctttgaagccactactcgggtatctttttggcacagttgcaatgtctgtattgggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="111491" stop="116350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111791" g_stop="111951" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111952" i_stop="113622" i_length="1671">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113623" g_stop="113670" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="210" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113671" i_stop="113768" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113769" g_stop="113842" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="284" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113843" i_stop="114648" i_length="806">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114649" g_stop="114779" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="415" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114780" i_stop="115870" i_length="1091">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115871" g_stop="116050" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="595" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E325965" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111791" e_stop="111951"/>
          <exon e_start="113623" e_stop="113670"/>
          <exon e_start="113769" e_stop="113842"/>
          <exon e_start="114649" e_stop="114779"/>
          <exon e_start="115871" e_stop="116050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTTTTTTTTAAATAAAAAATGAGTATTAAATTTCT-TCTTTTTCAGCAGAATCATCAAGGCTTCAAGATTCTTGATTCTCCTTCACTTCACAAATCTCTACCTTGTTTTCATCAACACCCAGTTGTTTCTTTTACCAAGAAATGCTTCCACTCCTCAGGTTTGTTTGTTTTTATACTTACAAGTATTTATAAAAAAAAGGAGAGATTTTTATGATTGTTTTTCAATATTCATGTGTATTTATGCTTACCCTTTTGATAGTTTTGTCCAATTTGGGATTCTTGATGTGGTATCATTGATGAAAGAAAAAAGTGATTTTGTGAATTTTTTTGTAATATCAAGTGTATTTGTACTGCCCCTTTTTTAATGAATTAGTTCAACTTGTACTTGAGTTCTTGAAAGGAATTCCCTTAATTATACAATCTTTATTCTTTTTGGGGAAATTGACATAAATAGTTGCTGGCCCAAAAAAAAAAATTGCCATAATATTTGTATAGAGCATGTGTATTATCTATAGCTGATGTAGACATTTTTTGCTGAGCAACCAAATCTGTAACTTCCCTCTTTCTCTTTTTACCTCAATAGTGTATTATTTTGCTTAAAGTTTGAATCTTTTTGCTTCTCAAAGTAAAACTGTACTTCGGTAAATGGGTTCTTGAAGGGGGTATGATTGATGAAAGAAAAAAGAGATTTTGTGATATATTTTTCAGTATCAAGTGTATTTATAATGCTATTAGTGATGAATTAATCTAATTTGTACTTTTGTGCTTGAAGGAGTTTCCCCCATCTATACAACAGCAAGTAGGTGTGTTTTATTTTGCTCAATTGTAATCTATTTTCCTCAAAGTTTGAATCTTTTTGCTTCTCAACCGTGCAAAGTACTTAGTTCTTTTTGCTTCTCAATAGTCAAACTGTACTTAGGTTCTTGAAGGGGTATGATGTTGAAGGAAAAATAGATTTTTTTTTTTTTGTATAAAGTGTCGGTCGTAGTATTAGCATATTCATTTAGTCTTTGGTTTAGAGTTTCTGATTATCATATGTGGTTTATTGGGTTTAGGTGATTGCACCTTGTTGTTCATGTTATGGTTTCTTGCATATATGCTCTGTACTATTTGCTATTAGCTCTCATGTTTTTCTTTTTGATTACTGCTTTGATTTTCTTGAGCAAAGGGCCTTTCGGCAACAGCCTATCTACCTCGGAGAGGTAGGGGTAAGGTCTACGTACACCCTACCCTTCCTAGACCCCCCACTTTGTGGATTTCATTGGGGTTTTTTTGTTGTTTTTCATATCAAGTGTATTTTTACTGCCCCTTTAAAAAAAATTTAGTTCAATTGTAATCTATTTTGCTCAAATTTTGAATCTTTTTGCTTCTCAAAGTACAGTTGATAATGTGCTCTTTACTTTTAAGTATAAAAAGAAAAAAAGAAAAAAAATTATGATCTTTCTTCAATATCAAGTTTATTTCTACTGCCCCTTTTGATATATTAGTCCAACTTGTACTTGTGTTCCTTGATTCTTGAAGGGGTATGATTGGTGAGGGTTTCTTCAACTATAAAATCCACATTGCCAATTAGGTGTTTTTTCTGAAAATTCAATATGTTCTATTTTACTCAAAGTTGAGATCCTTTTGCTTCTCAAGTTTAGTTGATAATGTACTTTATTTAGGTCATGAATGTGATCTTTTTATATAGGTGGTAATTCAAGCGGTTGTTTAGTAGATGTATCTCAGAAAAGTTATCAGATTTTGTGATTGTTTTATTTTTCAGTATCAAGTGTGTTTCTACTATCCCTTTTAATGAATTAGTCCAATTTGTATTTGGGTTCTTGAAGGGGTACGATTGGTGGGGTTTCCATCAGCTATACAATCCACATTGCCAAGTAAGTGATTTCTAAACTCAATTGTAATACTTTGCTCAAAGTTTTAGTTGATAATGTCTTTTTTCTTGCTCATGAATGTGATCTTTTTCGGTATTCAGGACTATTGGTTACTAGATGTATCTCAGAAAGTTTCTCAGATCCACTTGGGCCTAATGACTTTGAATCACTTGAGGTTTTCCATTTTTACATCTGGAGCCATTTACTCAAAGTTCAATTATATGCTTTTGTGAATTTGACTTGTATTTGTATGTGGAATCGAGCAACGAAAGACTTGTTAATTTATTGGTGACAACCATTTTTCTTTGAGAGGTATGGCTATGAATACTATCATTGCATAAAAAAACGAGTTTGATATAGAAAATTCTCTAGCATCCAAGGGTGTGGTCTAGCGGACAATAAAATGGGAGAGCTAGAAGATACCTTACGTGATTTTTTCCCCCATTTATTTAAGCCTTAGCCAGCAGAGTTATCCGATACTTGTCTTGGTGAGAGGTAGAAGATACTGAGTGGAATAGTCGAGGTGTGTGAGGTGTGTGCAAGCTTTCCCAGACATCACCCTTATAAAACATAGAAAAAAGTAATAGAAAATTCTCTATGTATGTGGATAAAGTTCCAGATATGAGAAGTAGTTGATATAGGAAGCAATTTGTTTTGGTTCCTAGCCATTTCAAGCTGATGTACTGACTGTTATTACTAATTGAAGACATTTCGATGTGAGGGCAATGTTCTCTGGTTTGATTACATTTCTAATGTTTCCAATGCTTCTTTCCCTTGAGATTGTGAATCAAAGAGGTTGATTGGCTCATATTTTAATTCTTAAACCTCTCGATATTTTTGAAAAGGAAAAGAAACATAATAGGGAAAAGGGGGTTATGTTGTTTCCTTGAATGTTTCGAAGCCGACATTTGATTTGTTGGATTTGAAGTATTTGCATTTAAGTTTTGTTTTTTTTTAACAATAGACATTTTGTTATTACAGAATTTGAAACAAAAAGAGAACGCCTTTTTGACAATTTTGAAGGGAGCAAACTCTTTTCTGCCCCATGTGGTTCTTGCTAGCACAATTTTGGCTCTTATCTATCCACCTTCTTTTACTTGGTTTACCAACAGGTTTGTCTATCATCCAATTGGTGCTTATTTTCTCATCTATTTTGTTCTATCCCTCTAGCATCTCATGCTATCTTACTTTTCACCTTGCAAAAAGTTTTGCGATAGGTCTGATAACTCTTTCAGAAGTTCGCAGGGACACATAACGCTTGTTTCTGTATTTTGATCTTATTAATTGATACTGTTGTCTGTTAGACAAAGAATTCAATTGACAAGTAATCATTTTCCCTGTTTGACGTATTAAGTAACATTGGTTACTGCATGAAGCAAGTGCATTTATATTTTGTTAAAAGCAAGCAAGATCATTTTTAATTCTAATTTGGAGCTTAAGTTCTACTTTTGGAGGTGTTATATACTGTCTATGCAAATTAGTTAGAATAGAAGAAAATATTTCCTATGTATTCGTGAACTAGGTGGCATCTTTATGTTGTTGAACTACATAAATTAACAGTTGTAAGATACTTTTGAGTCTTGTAATACACATTATTAAAGCTAATAATTCGAAGAATTTCAAAATGTATGCATTTGATCACTTTCTGAAAGAAGAGTTTTGTTCAGACTTTTGTTTGTTTGGATTACTTATCATGTATACTAGAATCAACAACTCATTCCAAGGAGAAACTCGTATAAATTTTGCCGGGACAAATCATTAATTGCATTCTAGAGGACTTATATCTCTCTGCTAGACTTGGTCAAAGTATCGTGGCTTGATCAGGTCATTTGAATTTATCCTTATAAATGTATACTGAGGCTTCTATAACTAAACCAATTGGCATTAGTTGTAGCAGGAGGTGTGGTAGAGACCCGTGCCAGAGGTCAGAGTAATTCCTTTATTGAAAGTTTTCCGTGGATATATCTATTTCTTTTACCAATTTATCCCCTCTAGAAAAGGATGGAGGTGTAGAATTGGATCTTGGCAAAAGTCTGTCATTCAATATTTGCACCGATTTGGTCTCACGTTGTCTATCTAGGATAGTTAGAGAAAGGTATTATGTGACAAATAGTTGCAGAGTGCATACCAAAAAGTCTAAACTGCTTAGTTTTTCACCTCATCGTATGGTCTCATTTTTAACCGTGATGTTTGCCGTTTCTAGGTACTATGCCCCTGCATTAGGATTTTTAATGTTCGCTGTTGGAGTCAATTCAAGTGAAAAGGACTTTCTTGAAGCTTTCAAGAAACCTGCTGCCATTTTTGCTGGTTATATCGGTCAATTTGCTTTGAAGCCACTACTCGGGTATCTTTTTGGCACAGTTGCAATGTCTGTATTGGGTCT</genome_strand>
        <mrna_strand>TGAATTTTTTTTTAAATAAAAAATGAGTATTAAATTTCTGGCTTTTTGGGCAGAATCATCAAGGCTTCAAGATTCTTGATTCTCCTTCACTTCACAAATCTCTACCTTGTTTTCATCAACACCCAGTTGTTTCTTTTACCAAGAAATGCTTCCACTCCTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTACGATTGGTGGGGTTTCCATCAGCTATACAATCCACATTGCCAA..................................................................................................GACTATTGGTTACTAGATGTATCTCAGAAAGTTTCTCAGATCCACTTGGGCCTAATGACTTTGAATCACTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGAAACAAAAAGAGAACGCCTTTTTGACAATTTTGAAGGGAGCAAACTCTTTTCTGCCCCATGTGGTTCTTGCTAGCACAATTTTGGCTCTTATCTATCCACCTTCTTTTACTTGGTTTACCAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTATGCCCCTGCATTAGGATTTTTAATGTTCGCTGTTGGAGTCAATTCAAGTGAAAAGGACTTTCTTGAAGCTTTCAAGAAACCTGCTGCCATTTTTGCTGGTTATATCGGTCAATTTGCTTTGAAGCCACTACTCGGGTATCTTTTTGGCACAGTTGCAATGTCTGTATTGGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376677" ref_strand="+" ref_description="SGN-E376677 [TUS-18-O16](-)">
      <seq>tgactgctctcgctgtaggagctccactcgctattaacatagattccctcatgtccccttctggaatgtctgttttgttcctagtgattgcatttcatttatcagctttcatcttggcctattttctttccggcctagccttccacaaagcacccgatgtcaaagctctacaaagaacactgtcatacgaaacaggcatgcagagcagtcttttggcccttgctcttgccaataagttttttcaagatccccttgttagtgtcccaccagctatatcagttgtgatcatgtcattaatgggcttcacactagtgatgctgtggactaagaaaaaagaaactgttatggagtgataaaaattatcattcatcgagtttcgaatcgtctgttgactgatcctcgaaaatttctcgattatcaaaaaaaaaaaatccacacattatctgtcctaacagtgcttgtaatgtcaagaacctaatggtacaactaaagacggcatcaccaaatgttgtgtggaattttattttctatatgtaattttcagtagaaataaatgtgtactacatttttcttttgctataggtaggtcaagtgttatttagtcttttttttaattagtgttgtcttttttaactctcatataatataaatttttaaaaatttagtattaccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="116227" stop="117906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116527" g_stop="116721" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116722" i_stop="116812" i_length="91">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116813" g_stop="116895" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="278" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116896" i_stop="117211" i_length="316">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117212" g_stop="117605" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="672" r_length="394" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="673" polyA_stop="683"/>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E376677" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116527" e_stop="116721"/>
          <exon e_start="116813" e_stop="116895"/>
          <exon e_start="117212" e_stop="117605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTGCTCTCGCTGTAGGAGCTCCACTCGCTATTAACATAGATTCCCTCATGTCCCCTTCTGGAATGTCTGTTTTGTTCCTAGTGATTGCATTTCATTTATCAGCTTTCATCTTGGCCTATTTTCTTTCCGGCCTAGCCTTCCACAAAGCACCCGATGTCAAAGCTCTACAAAGAACACTGTCATACGAAACAGGTTTGGAGACTACATAATATTATCACCGTGCACGAGATGCATATATTATTGAAACTTGATTGACGTTGTCATTTTCAAATTGCGTTTGCAGGCATGCAGAGCAGTCTTTTGGCCCTTGCTCTTGCCAATAAGTTTTTTCAAGATCCCCTTGTTAGTGTCCCACCAGCTATATCAGTAAGTCATCTATCAATTTTATAGCTTTATATGCGTTCATCTGAAATATGGTATCAGAGTCGAATCTTTTGCCCTCCGTTAATAGTTTGGATGCTTTTTGCCCCTGTCGTTACCAAAAGGTAGCATTTTTGTCCTTTCAGGTTCGGAATCTTTAAAAAAAACATACGGATAAAGGAAAAAGTGTTTAACCGTACAGTTTAGGGGCAATTTTGATCCTTTTCCGTTCTCTCATCCTATTCATTTTTCATTCTATTTTTTTTTCTTCAGTTTTTAACTTTTAGTCACATTTTAACATTTGCTTGGTACATTTTTGCAGGTTGTGATCATGTCATTAATGGGCTTCACACTAGTGATGCTGTGGACTAAGAAAAAAGAAACTGTTATGGAGTGATAAAAATTATCATTCATCGAGTTTCGAATCGTCTGTTGACTGATCCTCGAAAATTTCTCGATTATCAAAAAAAAAAAATCCACACATTATCTGTCCTAACAGTGCTTGTAATGTCAAGAACCTAATGGTACAACTAAAGACGGCATCACCAAATGTTGTGTGGAATTTTATTTTCTATATGTAATTTTCAGTAGAAATAAATGTGTACTACATTTTTCTTTTGCTATAGGTAGGTCAAGTGTTATTTAGTCTTTTTTTTAATTAGTGTTGTCTTTTTTAACTCTCATATAATATAAATTTTTAAAAATTTAGTATTACC</genome_strand>
        <mrna_strand>TGACTGCTCTCGCTGTAGGAGCTCCACTCGCTATTAACATAGATTCCCTCATGTCCCCTTCTGGAATGTCTGTTTTGTTCCTAGTGATTGCATTTCATTTATCAGCTTTCATCTTGGCCTATTTTCTTTCCGGCCTAGCCTTCCACAAAGCACCCGATGTCAAAGCTCTACAAAGAACACTGTCATACGAAACAG...........................................................................................GCATGCAGAGCAGTCTTTTGGCCCTTGCTCTTGCCAATAAGTTTTTTCAAGATCCCCTTGTTAGTGTCCCACCAGCTATATCA............................................................................................................................................................................................................................................................................................................................GTTGTGATCATGTCATTAATGGGCTTCACACTAGTGATGCTGTGGACTAAGAAAAAAGAAACTGTTATGGAGTGATAAAAATTATCATTCATCGAGTTTCGAATCGTCTGTTGACTGATCCTCGAAAATTTCTCGATTATCAAAAAAAAAAAATCCACACATTATCTGTCCTAACAGTGCTTGTAATGTCAAGAACCTAATGGTACAACTAAAGACGGCATCACCAAATGTTGTGTGGAATTTTATTTTCTATATGTAATTTTCAGTAGAAATAAATGTGTACTACATTTTTCTTTTGCTATAGGTAGGTCAAGTGTTATTTAGTCTTTTTTTTAATTAGTGTTGTCTTTTTTAACTCTCATATAATATAAATTTTTAAAAATTTAGTATTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376678" ref_strand="+" ref_description="SGN-E376678 [TUS-18-O16]">
      <seq>gactgctctcgctgtaggagctccactcgctattaacatagattccctcatgtccccttctggaatgtctgttttgttcctagtgattgcatttcatttatcagctttcatcttggcctattttctttccggcctagccttccacaaagcacccgatgtcaaagctctacaaagaacactgtcatacgaaacaggcatgcagagcagtcttttggcccttgctcttgccaataagttttttcaagatccccttgttagtgtcccaccagctatatcagttgtgatcatgtcattaatgggcttcacactagtgatgctgtggactaagaaaaaagaaactgttatggagtgataaaaattatcattcatcgagtttcgaatcgtctgttgactgatcctcgaaaatttctcgattatcaaaaaaaaaaaatccacacattatctgtcctaacagtgcttgtaatgtcaagaacctaatggtacaactaaagacggcatcaccaaatgttgtgtggaattttattttctatatgtaattttcagtagaaataaatgtgtactacatttttcttttgctataggtaggtcaagtgttatttagtcttttttttaattagtgttgtcttttttaactctcatataatataaatttttaaaatttagtattaccaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="116228" stop="117906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116528" g_stop="116721" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116722" i_stop="116812" i_length="91">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116813" g_stop="116895" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="277" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116896" i_stop="117211" i_length="316">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117212" g_stop="117605" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="670" r_length="393" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E376678" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116528" e_stop="116721"/>
          <exon e_start="116813" e_stop="116895"/>
          <exon e_start="117212" e_stop="117605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGCTCTCGCTGTAGGAGCTCCACTCGCTATTAACATAGATTCCCTCATGTCCCCTTCTGGAATGTCTGTTTTGTTCCTAGTGATTGCATTTCATTTATCAGCTTTCATCTTGGCCTATTTTCTTTCCGGCCTAGCCTTCCACAAAGCACCCGATGTCAAAGCTCTACAAAGAACACTGTCATACGAAACAGGTTTGGAGACTACATAATATTATCACCGTGCACGAGATGCATATATTATTGAAACTTGATTGACGTTGTCATTTTCAAATTGCGTTTGCAGGCATGCAGAGCAGTCTTTTGGCCCTTGCTCTTGCCAATAAGTTTTTTCAAGATCCCCTTGTTAGTGTCCCACCAGCTATATCAGTAAGTCATCTATCAATTTTATAGCTTTATATGCGTTCATCTGAAATATGGTATCAGAGTCGAATCTTTTGCCCTCCGTTAATAGTTTGGATGCTTTTTGCCCCTGTCGTTACCAAAAGGTAGCATTTTTGTCCTTTCAGGTTCGGAATCTTTAAAAAAAACATACGGATAAAGGAAAAAGTGTTTAACCGTACAGTTTAGGGGCAATTTTGATCCTTTTCCGTTCTCTCATCCTATTCATTTTTCATTCTATTTTTTTTTCTTCAGTTTTTAACTTTTAGTCACATTTTAACATTTGCTTGGTACATTTTTGCAGGTTGTGATCATGTCATTAATGGGCTTCACACTAGTGATGCTGTGGACTAAGAAAAAAGAAACTGTTATGGAGTGATAAAAATTATCATTCATCGAGTTTCGAATCGTCTGTTGACTGATCCTCGAAAATTTCTCGATTATCAAAAAAAAAAAATCCACACATTATCTGTCCTAACAGTGCTTGTAATGTCAAGAACCTAATGGTACAACTAAAGACGGCATCACCAAATGTTGTGTGGAATTTTATTTTCTATATGTAATTTTCAGTAGAAATAAATGTGTACTACATTTTTCTTTTGCTATAGGTAGGTCAAGTGTTATTTAGTCTTTTTTTTAATTAGTGTTGTCTTTTTTAACTCTCATATAATATAAATTTTTAAAAATTTAGTATTACC</genome_strand>
        <mrna_strand>GACTGCTCTCGCTGTAGGAGCTCCACTCGCTATTAACATAGATTCCCTCATGTCCCCTTCTGGAATGTCTGTTTTGTTCCTAGTGATTGCATTTCATTTATCAGCTTTCATCTTGGCCTATTTTCTTTCCGGCCTAGCCTTCCACAAAGCACCCGATGTCAAAGCTCTACAAAGAACACTGTCATACGAAACAG...........................................................................................GCATGCAGAGCAGTCTTTTGGCCCTTGCTCTTGCCAATAAGTTTTTTCAAGATCCCCTTGTTAGTGTCCCACCAGCTATATCA............................................................................................................................................................................................................................................................................................................................GTTGTGATCATGTCATTAATGGGCTTCACACTAGTGATGCTGTGGACTAAGAAAAAAGAAACTGTTATGGAGTGATAAAAATTATCATTCATCGAGTTTCGAATCGTCTGTTGACTGATCCTCGAAAATTTCTCGATTATCAAAAAAAAAAAATCCACACATTATCTGTCCTAACAGTGCTTGTAATGTCAAGAACCTAATGGTACAACTAAAGACGGCATCACCAAATGTTGTGTGGAATTTTATTTTCTATATGTAATTTTCAGTAGAAATAAATGTGTACTACATTTTTCTTTTGCTATAGGTAGGTCAAGTGTTATTTAGTCTTTTTTTTAATTAGTGTTGTCTTTTTTAACTCTCATATAATATAAATTTTT-AAAATTTAGTATTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375075" ref_strand="+" ref_description="SGN-E375075 [TUS-36-E15]">
      <seq>gactgctctcgctgtaggagctccactcgctattaacatagattccctcatgtccccttctggaatgtctgttttgttcctagtgattgcatttcatttatcagctttcatcttggcctattttctttccggcctagccttccacaaagcacccgatgtcaaagctctacaaagaacactgtcatacgaaacaggcatgcagagcagtcttttggcccttgctcttgccaataagttttttcaagatccccttgttagtgtcccaccagctatatcagttgtgatcatgtcattaatgggcttcacactagtgatgctgtggactaagaaaaaagaaactgttatggagtgataaaaattatcattcatcgagtttcgaatcgtctgttgactgatcctcgaaaatttctcgattatcaaaaaaaaaaaatccacacattatctgtcctaacagtgcttgtaatgtcaagaacctaatggtacaactaaagacggcatcaccaaatgttgtgtggaattttattttctatatgtaattttcagtagaaataaatgtgtactacatttttcttttgctataggtaggtcaagtgttatttagtccttttttttaattagtgttggctttttttaacctctcatataatataaaatttttaaaatttagtatttaccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="116228" stop="117906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116528" g_stop="116721" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116722" i_stop="116812" i_length="91">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116813" g_stop="116895" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="277" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116896" i_stop="117211" i_length="316">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117212" g_stop="117599" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="668" r_length="391" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="676" polyA_stop="688"/>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E375075" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116528" e_stop="116721"/>
          <exon e_start="116813" e_stop="116895"/>
          <exon e_start="117212" e_stop="117599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGCTCTCGCTGTAGGAGCTCCACTCGCTATTAACATAGATTCCCTCATGTCCCCTTCTGGAATGTCTGTTTTGTTCCTAGTGATTGCATTTCATTTATCAGCTTTCATCTTGGCCTATTTTCTTTCCGGCCTAGCCTTCCACAAAGCACCCGATGTCAAAGCTCTACAAAGAACACTGTCATACGAAACAGGTTTGGAGACTACATAATATTATCACCGTGCACGAGATGCATATATTATTGAAACTTGATTGACGTTGTCATTTTCAAATTGCGTTTGCAGGCATGCAGAGCAGTCTTTTGGCCCTTGCTCTTGCCAATAAGTTTTTTCAAGATCCCCTTGTTAGTGTCCCACCAGCTATATCAGTAAGTCATCTATCAATTTTATAGCTTTATATGCGTTCATCTGAAATATGGTATCAGAGTCGAATCTTTTGCCCTCCGTTAATAGTTTGGATGCTTTTTGCCCCTGTCGTTACCAAAAGGTAGCATTTTTGTCCTTTCAGGTTCGGAATCTTTAAAAAAAACATACGGATAAAGGAAAAAGTGTTTAACCGTACAGTTTAGGGGCAATTTTGATCCTTTTCCGTTCTCTCATCCTATTCATTTTTCATTCTATTTTTTTTTCTTCAGTTTTTAACTTTTAGTCACATTTTAACATTTGCTTGGTACATTTTTGCAGGTTGTGATCATGTCATTAATGGGCTTCACACTAGTGATGCTGTGGACTAAGAAAAAAGAAACTGTTATGGAGTGATAAAAATTATCATTCATCGAGTTTCGAATCGTCTGTTGACTGATCCTCGAAAATTTCTCGATTATCAAAAAAAAAAAATCCACACATTATCTGTCCTAACAGTGCTTGTAATGTCAAGAACCTAATGGTACAACTAAAGACGGCATCACCAAATGTTGTGTGGAATTTTATTTTCTATATGTAATTTTCAGTAGAAATAAATGTGTACTACATTTTTCTTTTGCTATAGGTAGGTCAAGTGTTATTTAGT-CTTTTTTTTAATTAGTGTTGTC-TTTTTTAA-CTCTCATATAATATAAATTTTTAAAAATTTAGT</genome_strand>
        <mrna_strand>GACTGCTCTCGCTGTAGGAGCTCCACTCGCTATTAACATAGATTCCCTCATGTCCCCTTCTGGAATGTCTGTTTTGTTCCTAGTGATTGCATTTCATTTATCAGCTTTCATCTTGGCCTATTTTCTTTCCGGCCTAGCCTTCCACAAAGCACCCGATGTCAAAGCTCTACAAAGAACACTGTCATACGAAACAG...........................................................................................GCATGCAGAGCAGTCTTTTGGCCCTTGCTCTTGCCAATAAGTTTTTTCAAGATCCCCTTGTTAGTGTCCCACCAGCTATATCA............................................................................................................................................................................................................................................................................................................................GTTGTGATCATGTCATTAATGGGCTTCACACTAGTGATGCTGTGGACTAAGAAAAAAGAAACTGTTATGGAGTGATAAAAATTATCATTCATCGAGTTTCGAATCGTCTGTTGACTGATCCTCGAAAATTTCTCGATTATCAAAAAAAAAAAATCCACACATTATCTGTCCTAACAGTGCTTGTAATGTCAAGAACCTAATGGTACAACTAAAGACGGCATCACCAAATGTTGTGTGGAATTTTATTTTCTATATGTAATTTTCAGTAGAAATAAATGTGTACTACATTTTTCTTTTGCTATAGGTAGGTCAAGTGTTATTTAGTCCTTTTTTTTAATTAGTGTTGGCTTTTTTTAACCTCTCATATAATATAAAATTTTTAAAATTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238270" ref_strand="+" ref_description="SGN-E238270 [cLED-22-H24]">
      <seq>gactgctctcgctgtaggagctccactcgctattaacatagattccctcatgtccccttctggaatgtctgttttgttcctagtgattgcatttcatttatcagctttcatcttggcctattttctttccggcctagccttccacaaagcacccgatgtcaaagctctacaaagaacactgtcatacgaaacaggcatgcagagcagtcttttggcccttgctcttgccaataagttttttcaagatccccttgttagtgtcccaccagctatatcagttgtgatcatgtcattaatgggcttcacactagtgatgctgtggactaagaaaaaagaaactgttatggagtgataaaaattatcattcatcgagtttcgaatcgtctgttgactgatcctcgaaaatttctcgattatcaaaaaaaaaaaatccacacattatctgtcctaacagtgcttgtaatgtcaagaacctaatggtacaactaaagacggcatcaccaaatgttgtgtggaattttattntctatatgtaaatttcagtagaaataaatgtgtactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="116228" stop="117798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116528" g_stop="116721" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116722" i_stop="116812" i_length="91">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116813" g_stop="116895" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="277" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116896" i_stop="117211" i_length="316">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117212" g_stop="117498" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="564" r_length="287" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E238270" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116528" e_stop="116721"/>
          <exon e_start="116813" e_stop="116895"/>
          <exon e_start="117212" e_stop="117498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGCTCTCGCTGTAGGAGCTCCACTCGCTATTAACATAGATTCCCTCATGTCCCCTTCTGGAATGTCTGTTTTGTTCCTAGTGATTGCATTTCATTTATCAGCTTTCATCTTGGCCTATTTTCTTTCCGGCCTAGCCTTCCACAAAGCACCCGATGTCAAAGCTCTACAAAGAACACTGTCATACGAAACAGGTTTGGAGACTACATAATATTATCACCGTGCACGAGATGCATATATTATTGAAACTTGATTGACGTTGTCATTTTCAAATTGCGTTTGCAGGCATGCAGAGCAGTCTTTTGGCCCTTGCTCTTGCCAATAAGTTTTTTCAAGATCCCCTTGTTAGTGTCCCACCAGCTATATCAGTAAGTCATCTATCAATTTTATAGCTTTATATGCGTTCATCTGAAATATGGTATCAGAGTCGAATCTTTTGCCCTCCGTTAATAGTTTGGATGCTTTTTGCCCCTGTCGTTACCAAAAGGTAGCATTTTTGTCCTTTCAGGTTCGGAATCTTTAAAAAAAACATACGGATAAAGGAAAAAGTGTTTAACCGTACAGTTTAGGGGCAATTTTGATCCTTTTCCGTTCTCTCATCCTATTCATTTTTCATTCTATTTTTTTTTCTTCAGTTTTTAACTTTTAGTCACATTTTAACATTTGCTTGGTACATTTTTGCAGGTTGTGATCATGTCATTAATGGGCTTCACACTAGTGATGCTGTGGACTAAGAAAAAAGAAACTGTTATGGAGTGATAAAAATTATCATTCATCGAGTTTCGAATCGTCTGTTGACTGATCCTCGAAAATTTCTCGATTATCAAAAAAAAAAAATCCACACATTATCTGTCCTAACAGTGCTTGTAATGTCAAGAACCTAATGGTACAACTAAAGACGGCATCACCAAATGTTGTGTGGAATTTTATTTTCTATATGTAATTTTCAGTAGAAATAAATGTGTACTACA</genome_strand>
        <mrna_strand>GACTGCTCTCGCTGTAGGAGCTCCACTCGCTATTAACATAGATTCCCTCATGTCCCCTTCTGGAATGTCTGTTTTGTTCCTAGTGATTGCATTTCATTTATCAGCTTTCATCTTGGCCTATTTTCTTTCCGGCCTAGCCTTCCACAAAGCACCCGATGTCAAAGCTCTACAAAGAACACTGTCATACGAAACAG...........................................................................................GCATGCAGAGCAGTCTTTTGGCCCTTGCTCTTGCCAATAAGTTTTTTCAAGATCCCCTTGTTAGTGTCCCACCAGCTATATCA............................................................................................................................................................................................................................................................................................................................GTTGTGATCATGTCATTAATGGGCTTCACACTAGTGATGCTGTGGACTAAGAAAAAAGAAACTGTTATGGAGTGATAAAAATTATCATTCATCGAGTTTCGAATCGTCTGTTGACTGATCCTCGAAAATTTCTCGATTATCAAAAAAAAAAAATCCACACATTATCTGTCCTAACAGTGCTTGTAATGTCAAGAACCTAATGGTACAACTAAAGACGGCATCACCAAATGTTGTGTGGAATTTTATTNTCTATATGTAAATTTCAGTAGAAATAAATGTGTACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231762" ref_strand="+" ref_description="SGN-E231762 [cLED-4-J22]">
      <seq>gactgctctcgctgtaggagctccactcgctattaacatagattccctcatgtccccttctggaatgtctgttttgttcctagtgattgcatttcatttatcagctttcatcttggcctattttctttccggcctagccttccacaaagcacccgatgtcaaagctctacaaagaacactgtcatacgaaacaggcatgcagagcagtcttttggcccttgctcttgccaataagttttttcaagatccccttgttagtgtcccaccagctatatcagttgtgatcatgtcattaatgggcttcacactagtgatgctgtggactaagaaaaaagaaactgttatggagtgataaaaattatcattcatcgagtttcgaatcgtctgttgactgatcctcgaaaatttctcgattatcaaaaaaaaaaaatccacacattatctgtcctaacagtgcttgtaatgtcaagaacctaatggtacaactaaagacggcatcaccaaatgttgtgtggaattttattttctatatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="116228" stop="117768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116528" g_stop="116721" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116722" i_stop="116812" i_length="91">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116813" g_stop="116895" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="277" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116896" i_stop="117211" i_length="316">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117212" g_stop="117468" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="534" r_length="257" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E231762" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116528" e_stop="116721"/>
          <exon e_start="116813" e_stop="116895"/>
          <exon e_start="117212" e_stop="117468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGCTCTCGCTGTAGGAGCTCCACTCGCTATTAACATAGATTCCCTCATGTCCCCTTCTGGAATGTCTGTTTTGTTCCTAGTGATTGCATTTCATTTATCAGCTTTCATCTTGGCCTATTTTCTTTCCGGCCTAGCCTTCCACAAAGCACCCGATGTCAAAGCTCTACAAAGAACACTGTCATACGAAACAGGTTTGGAGACTACATAATATTATCACCGTGCACGAGATGCATATATTATTGAAACTTGATTGACGTTGTCATTTTCAAATTGCGTTTGCAGGCATGCAGAGCAGTCTTTTGGCCCTTGCTCTTGCCAATAAGTTTTTTCAAGATCCCCTTGTTAGTGTCCCACCAGCTATATCAGTAAGTCATCTATCAATTTTATAGCTTTATATGCGTTCATCTGAAATATGGTATCAGAGTCGAATCTTTTGCCCTCCGTTAATAGTTTGGATGCTTTTTGCCCCTGTCGTTACCAAAAGGTAGCATTTTTGTCCTTTCAGGTTCGGAATCTTTAAAAAAAACATACGGATAAAGGAAAAAGTGTTTAACCGTACAGTTTAGGGGCAATTTTGATCCTTTTCCGTTCTCTCATCCTATTCATTTTTCATTCTATTTTTTTTTCTTCAGTTTTTAACTTTTAGTCACATTTTAACATTTGCTTGGTACATTTTTGCAGGTTGTGATCATGTCATTAATGGGCTTCACACTAGTGATGCTGTGGACTAAGAAAAAAGAAACTGTTATGGAGTGATAAAAATTATCATTCATCGAGTTTCGAATCGTCTGTTGACTGATCCTCGAAAATTTCTCGATTATCAAAAAAAAAAAATCCACACATTATCTGTCCTAACAGTGCTTGTAATGTCAAGAACCTAATGGTACAACTAAAGACGGCATCACCAAATGTTGTGTGGAATTTTATTTTCTATATGT</genome_strand>
        <mrna_strand>GACTGCTCTCGCTGTAGGAGCTCCACTCGCTATTAACATAGATTCCCTCATGTCCCCTTCTGGAATGTCTGTTTTGTTCCTAGTGATTGCATTTCATTTATCAGCTTTCATCTTGGCCTATTTTCTTTCCGGCCTAGCCTTCCACAAAGCACCCGATGTCAAAGCTCTACAAAGAACACTGTCATACGAAACAG...........................................................................................GCATGCAGAGCAGTCTTTTGGCCCTTGCTCTTGCCAATAAGTTTTTTCAAGATCCCCTTGTTAGTGTCCCACCAGCTATATCA............................................................................................................................................................................................................................................................................................................................GTTGTGATCATGTCATTAATGGGCTTCACACTAGTGATGCTGTGGACTAAGAAAAAAGAAACTGTTATGGAGTGATAAAAATTATCATTCATCGAGTTTCGAATCGTCTGTTGACTGATCCTCGAAAATTTCTCGATTATCAAAAAAAAAAAATCCACACATTATCTGTCCTAACAGTGCTTGTAATGTCAAGAACCTAATGGTACAACTAAAGACGGCATCACCAAATGTTGTGTGGAATTTTATTTTCTATATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243873" ref_strand="+" ref_description="SGN-E243873 [cLED-35-G10]">
      <seq>gactgctctcgctgtaggagctccactcgctattaacatagattccctcatgtccccttctggaatgtctgttttgttcctagtgattgcatttcatttatcagctttcatcttggcctattttctttccggcctagccttccacaaagcacccgatgtcaaagctctacaaagaacactgtcatacgaaacaggcatgcagagcagtcttttggcccttgctcttgccaataagttttttcaagatccccttgttagtgtcccaccagctatatcagttgtgatcatgtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="116228" stop="117527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116528" g_stop="116721" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116722" i_stop="116812" i_length="91">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116813" g_stop="116895" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="277" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116896" i_stop="117211" i_length="316">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117212" g_stop="117227" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="293" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E243873" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116528" e_stop="116721"/>
          <exon e_start="116813" e_stop="116895"/>
          <exon e_start="117212" e_stop="117227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGCTCTCGCTGTAGGAGCTCCACTCGCTATTAACATAGATTCCCTCATGTCCCCTTCTGGAATGTCTGTTTTGTTCCTAGTGATTGCATTTCATTTATCAGCTTTCATCTTGGCCTATTTTCTTTCCGGCCTAGCCTTCCACAAAGCACCCGATGTCAAAGCTCTACAAAGAACACTGTCATACGAAACAGGTTTGGAGACTACATAATATTATCACCGTGCACGAGATGCATATATTATTGAAACTTGATTGACGTTGTCATTTTCAAATTGCGTTTGCAGGCATGCAGAGCAGTCTTTTGGCCCTTGCTCTTGCCAATAAGTTTTTTCAAGATCCCCTTGTTAGTGTCCCACCAGCTATATCAGTAAGTCATCTATCAATTTTATAGCTTTATATGCGTTCATCTGAAATATGGTATCAGAGTCGAATCTTTTGCCCTCCGTTAATAGTTTGGATGCTTTTTGCCCCTGTCGTTACCAAAAGGTAGCATTTTTGTCCTTTCAGGTTCGGAATCTTTAAAAAAAACATACGGATAAAGGAAAAAGTGTTTAACCGTACAGTTTAGGGGCAATTTTGATCCTTTTCCGTTCTCTCATCCTATTCATTTTTCATTCTATTTTTTTTTCTTCAGTTTTTAACTTTTAGTCACATTTTAACATTTGCTTGGTACATTTTTGCAGGTTGTGATCATGTCAT</genome_strand>
        <mrna_strand>GACTGCTCTCGCTGTAGGAGCTCCACTCGCTATTAACATAGATTCCCTCATGTCCCCTTCTGGAATGTCTGTTTTGTTCCTAGTGATTGCATTTCATTTATCAGCTTTCATCTTGGCCTATTTTCTTTCCGGCCTAGCCTTCCACAAAGCACCCGATGTCAAAGCTCTACAAAGAACACTGTCATACGAAACAG...........................................................................................GCATGCAGAGCAGTCTTTTGGCCCTTGCTCTTGCCAATAAGTTTTTTCAAGATCCCCTTGTTAGTGTCCCACCAGCTATATCA............................................................................................................................................................................................................................................................................................................................GTTGTGATCATGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375074" ref_strand="+" ref_description="SGN-E375074 [TUS-36-E15](-)">
      <seq>aacactgtcatacgaaacaggcatgcagagcagtcttttggcccttgctcttgccaataagttttttcaagatccccttgttagtgtcccaccagctatatcagttgtgatcatgtcattaatgggcttcacactagtgatgctgtggactaagaaaaaagaaactgttatggagtgataaaaattatcattcatcgagtttcgaatcgtctgttgactgatcctcgaaaatttctcgattatcaaaaaaaaaaaatccacacattatctgtcctaacagtgcttgtaatgtcaagaacctaatggtacaactaaagacggcatcaccaaatgttgtgtggaattttattttctatatgtaattttcagtagaaataaatgtgtactacatttttcttttgctataggtaggtcaagtgttatttagtcttttttttaattagtgttgtcttttttaactctcatataatataaatttttaaaaatttagtattaccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="116402" stop="117906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116702" g_stop="116721" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116722" i_stop="116812" i_length="91">
            <donor d_prob="0.857" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116813" g_stop="116895" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="103" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116896" i_stop="117211" i_length="316">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117212" g_stop="117605" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="497" r_length="394" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="498" polyA_stop="508"/>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E375074" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116702" e_stop="116721"/>
          <exon e_start="116813" e_stop="116895"/>
          <exon e_start="117212" e_stop="117605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTGTCATACGAAACAGGTTTGGAGACTACATAATATTATCACCGTGCACGAGATGCATATATTATTGAAACTTGATTGACGTTGTCATTTTCAAATTGCGTTTGCAGGCATGCAGAGCAGTCTTTTGGCCCTTGCTCTTGCCAATAAGTTTTTTCAAGATCCCCTTGTTAGTGTCCCACCAGCTATATCAGTAAGTCATCTATCAATTTTATAGCTTTATATGCGTTCATCTGAAATATGGTATCAGAGTCGAATCTTTTGCCCTCCGTTAATAGTTTGGATGCTTTTTGCCCCTGTCGTTACCAAAAGGTAGCATTTTTGTCCTTTCAGGTTCGGAATCTTTAAAAAAAACATACGGATAAAGGAAAAAGTGTTTAACCGTACAGTTTAGGGGCAATTTTGATCCTTTTCCGTTCTCTCATCCTATTCATTTTTCATTCTATTTTTTTTTCTTCAGTTTTTAACTTTTAGTCACATTTTAACATTTGCTTGGTACATTTTTGCAGGTTGTGATCATGTCATTAATGGGCTTCACACTAGTGATGCTGTGGACTAAGAAAAAAGAAACTGTTATGGAGTGATAAAAATTATCATTCATCGAGTTTCGAATCGTCTGTTGACTGATCCTCGAAAATTTCTCGATTATCAAAAAAAAAAAATCCACACATTATCTGTCCTAACAGTGCTTGTAATGTCAAGAACCTAATGGTACAACTAAAGACGGCATCACCAAATGTTGTGTGGAATTTTATTTTCTATATGTAATTTTCAGTAGAAATAAATGTGTACTACATTTTTCTTTTGCTATAGGTAGGTCAAGTGTTATTTAGTCTTTTTTTTAATTAGTGTTGTCTTTTTTAACTCTCATATAATATAAATTTTTAAAAATTTAGTATTACC</genome_strand>
        <mrna_strand>AACACTGTCATACGAAACAG...........................................................................................GCATGCAGAGCAGTCTTTTGGCCCTTGCTCTTGCCAATAAGTTTTTTCAAGATCCCCTTGTTAGTGTCCCACCAGCTATATCA............................................................................................................................................................................................................................................................................................................................GTTGTGATCATGTCATTAATGGGCTTCACACTAGTGATGCTGTGGACTAAGAAAAAAGAAACTGTTATGGAGTGATAAAAATTATCATTCATCGAGTTTCGAATCGTCTGTTGACTGATCCTCGAAAATTTCTCGATTATCAAAAAAAAAAAATCCACACATTATCTGTCCTAACAGTGCTTGTAATGTCAAGAACCTAATGGTACAACTAAAGACGGCATCACCAAATGTTGTGTGGAATTTTATTTTCTATATGTAATTTTCAGTAGAAATAAATGTGTACTACATTTTTCTTTTGCTATAGGTAGGTCAAGTGTTATTTAGTCTTTTTTTTAATTAGTGTTGTCTTTTTTAACTCTCATATAATATAAATTTTTAAAAATTTAGTATTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338237" ref_strand="+" ref_description="SGN-E338237 [cTOE-13-I15]">
      <seq>aaagtgaaaaacttgactcaattcaatcaacaatggcagttccaatttcattatccctctcaaaacttcattctcttccaaatccaaaacaaacccagttctcttttacacataaagatccaaactttatcttctttacaagaaaaaagactcattttccagcacccattatcagtaatttgaaaaatgttgctgcaattttgggtttttctggacttgcttttacaacactaatggtgggctcagcttctggttctgagttaggtttaatgggttcttcttcttttcaattcaatgaaccttctaatgctctgtcattgcacacttgggctagtcatgtttccactattggtgaatgggtaactgctatggctctggtttggcaatatggagaaaagtcgggttatgaatcttggaagggactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="118326" stop="120587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118626" g_stop="118983" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118984" i_stop="120219" i_length="1236">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120220" g_stop="120287" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="426" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E338237" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118626" e_stop="118983"/>
          <exon e_start="120220" e_stop="120287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGAAAAACTTGACTCAATTCAATCAACAATGGCAGTTCCAATTTCATTATCCCTCTCAAAACTTCATTCTCTTCCAAATCCAAAACAAACCCAGTTCTCTTTTACACATAAAGATCCAAACTTTATCTTCTTTACAAGAAAAAAGACTCATTTTCCAGCACCCATTATCAGTAATTTGAAAAATGTTGCTGCAATTTTGGGTTTTTCTGGACTTGCTTTTACAACACTAATGGTGGGCTCAGCTTCTGGTTCTGAGTTAGGTTTAATGGGTTCTTCTTCTTTTCAATTCAATGAACCTTCTAATGCTCTGTCATTGCACACTTGGGCTAGTCATGTTTCCACTATTGTTGAATGGTAATTTCTCTGTTCCTATTTTGTCTCACATATTTGACTTAATGAGAGTTTAAGATGTTAAATTGTGTTTTTTAAGATGTTAATTTTGGATTATACTTACTCCGTTTTGTATTACTTGACCCTTGTTGACGCATGACATTTTGAAACTCTAAATTTGACTACTATTACTTTATGTTGTTATTTAATATTACTAAGGATGGTATGGGAAAAAGGATTTTCTTGGCTTGCTAAAATGGAGAAGTAAAATGAGATGGAGGGAATTTATTATATGAGGTGGATCAAGATTTGAACTTTGAATTGAGGGTCCATTGGGAACGGTCTCCCTATCTTCACAAGGTAGGGGTAAGGCTACATACACGCCATCCTCTTCAGACTCCACTTGTGGTATTACATTGCGTATGTTATTGTTGTTGATCAAGATTTGAACTTTATAAGTTTGAGTTTGAGTTTGGGTGCTACCATAAAGCATTTGATTTATTGGATTCAAAATCTAGTACTTCTAGTTATTTTGTGAGTTTTCTTAAGAGTTAATTGGTCAAAAACACACCTAGGATATACCCATTTTTTGAGTTTCATATAGGAAATATCATCATCGTTCAGGTAGGAAAAGTAAACAATTGATAGTTGAGGTGTGTTTTGATGAATAACGGTGATAGTTTAGGTAGGAAATTCGCACACATGATAGTTTAGGTTTGAAACTCGAAAAATCGGAGTACTTTAGGTGTGTTTTTGACCCTTCTTTCTTTTCTTAATACATATACAAGGTTTGAGCAAACTCTATTGTGGTTCAAACCTGTTACATATACTATGCATCCACGGTTCGCCACAGCATATTTATAGGGAAAATGTTCAAATTTATCCATCTGTTAGGCAGAATTTACCACTTCATTATAAGGTAGAGATAAGGCTACAGACACTCTCGCCCTCCTCAGACTCCATTTCTCAGAAAAATGTCCAAAATTATTCCTGGTTTAAAGTAATAGTTAAAATATTAGTTTAACAGATGCTAAAACATTACATCAAAGCTCAAATTTGAATTATCAAAAATTACGGAAGTTTTATAGAAAATGGAATGGCATCAACCAATTTCATGACGTCCTAAAATGGAAAGGGTGTTATGTAAATTTGGGCAGAGGGGGTATTGTAATGTGCAGTGCACTCTGTCACGGGGTGTTATTTGTTCATATGTTTTTTTGTGCAGAATGAAATGACATGATTTTTAACTTTGTTTGAAAGGGTAACTGCTATGGCTCTGGTTTGGCAATATGGAGAAAAGTCGGGTTATGAATCTTGGAAGGGACTCT</genome_strand>
        <mrna_strand>AAAGTGAAAAACTTGACTCAATTCAATCAACAATGGCAGTTCCAATTTCATTATCCCTCTCAAAACTTCATTCTCTTCCAAATCCAAAACAAACCCAGTTCTCTTTTACACATAAAGATCCAAACTTTATCTTCTTTACAAGAAAAAAGACTCATTTTCCAGCACCCATTATCAGTAATTTGAAAAATGTTGCTGCAATTTTGGGTTTTTCTGGACTTGCTTTTACAACACTAATGGTGGGCTCAGCTTCTGGTTCTGAGTTAGGTTTAATGGGTTCTTCTTCTTTTCAATTCAATGAACCTTCTAATGCTCTGTCATTGCACACTTGGGCTAGTCATGTTTCCACTATTGGTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAACTGCTATGGCTCTGGTTTGGCAATATGGAGAAAAGTCGGGTTATGAATCTTGGAAGGGACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721852" ref_strand="+" ref_description="SGN-E721852 [FC15CA01]">
      <seq>ggactcaattcaatcaccaatggcagttccaatttcattatccctctcaaaacttcattctcttccaaatccaaaacaaacccagttctcttttacacataaagatccaaactttatcttctttacaagaaaaaagactcattttccagcacccattatcagtaatttgaaaaatgttgctgcaattttgggtttttctggacttgcttttacaacactaatggtgggctcagcttctggttctgagttaggtttaatgggttcttcttcttttcaattcaatgaaccttctaatgctctgtcattgcacacttgggctagtcatgtttccactattgttgaatgggtaactgctatggctctggtttggcaatatggagaaaagtcgggttatgaatcttggaagggactctcctggggtatggtgcccctgcttggaggagcactctgtgcctgcacttggcatttcttttataactcggagtctcttgaggtagtagtggctctacaagcagctttgacagtaattggtaatgccacaatgtgctttgcagcattccggatatacagatcaacacagaaccagtcaaaagaactgtgatcatcgtctttgagtcatttcaccctactagattctccgtctaactcgtacataacgtaacgatcgttgctccatgctaagaaatggaagagtttttatagccagtgtagaccggagctctaagctaggtcaagaaagcggattcagaattttgaatttgtattgtttaacttttaaggttcttagactaaaactcactgtacatttttgaattcgtgtactcgagattcaaaatttataaatattgatggttaaaccaaattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="118340" stop="122911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118639" g_stop="118983" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118984" i_stop="120219" i_length="1236">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120220" g_stop="120298" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="424" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120299" i_stop="121947" i_length="1649">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121948" g_stop="122016" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="493" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122017" i_stop="122321" i_length="305">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122322" g_stop="122694" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="866" r_length="373" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E721852" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118639" e_stop="118983"/>
          <exon e_start="120220" e_stop="120298"/>
          <exon e_start="121948" e_stop="122016"/>
          <exon e_start="122322" e_stop="122694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTCAATTCAATCAACAATGGCAGTTCCAATTTCATTATCCCTCTCAAAACTTCATTCTCTTCCAAATCCAAAACAAACCCAGTTCTCTTTTACACATAAAGATCCAAACTTTATCTTCTTTACAAGAAAAAAGACTCATTTTCCAGCACCCATTATCAGTAATTTGAAAAATGTTGCTGCAATTTTGGGTTTTTCTGGACTTGCTTTTACAACACTAATGGTGGGCTCAGCTTCTGGTTCTGAGTTAGGTTTAATGGGTTCTTCTTCTTTTCAATTCAATGAACCTTCTAATGCTCTGTCATTGCACACTTGGGCTAGTCATGTTTCCACTATTGTTGAATGGTAATTTCTCTGTTCCTATTTTGTCTCACATATTTGACTTAATGAGAGTTTAAGATGTTAAATTGTGTTTTTTAAGATGTTAATTTTGGATTATACTTACTCCGTTTTGTATTACTTGACCCTTGTTGACGCATGACATTTTGAAACTCTAAATTTGACTACTATTACTTTATGTTGTTATTTAATATTACTAAGGATGGTATGGGAAAAAGGATTTTCTTGGCTTGCTAAAATGGAGAAGTAAAATGAGATGGAGGGAATTTATTATATGAGGTGGATCAAGATTTGAACTTTGAATTGAGGGTCCATTGGGAACGGTCTCCCTATCTTCACAAGGTAGGGGTAAGGCTACATACACGCCATCCTCTTCAGACTCCACTTGTGGTATTACATTGCGTATGTTATTGTTGTTGATCAAGATTTGAACTTTATAAGTTTGAGTTTGAGTTTGGGTGCTACCATAAAGCATTTGATTTATTGGATTCAAAATCTAGTACTTCTAGTTATTTTGTGAGTTTTCTTAAGAGTTAATTGGTCAAAAACACACCTAGGATATACCCATTTTTTGAGTTTCATATAGGAAATATCATCATCGTTCAGGTAGGAAAAGTAAACAATTGATAGTTGAGGTGTGTTTTGATGAATAACGGTGATAGTTTAGGTAGGAAATTCGCACACATGATAGTTTAGGTTTGAAACTCGAAAAATCGGAGTACTTTAGGTGTGTTTTTGACCCTTCTTTCTTTTCTTAATACATATACAAGGTTTGAGCAAACTCTATTGTGGTTCAAACCTGTTACATATACTATGCATCCACGGTTCGCCACAGCATATTTATAGGGAAAATGTTCAAATTTATCCATCTGTTAGGCAGAATTTACCACTTCATTATAAGGTAGAGATAAGGCTACAGACACTCTCGCCCTCCTCAGACTCCATTTCTCAGAAAAATGTCCAAAATTATTCCTGGTTTAAAGTAATAGTTAAAATATTAGTTTAACAGATGCTAAAACATTACATCAAAGCTCAAATTTGAATTATCAAAAATTACGGAAGTTTTATAGAAAATGGAATGGCATCAACCAATTTCATGACGTCCTAAAATGGAAAGGGTGTTATGTAAATTTGGGCAGAGGGGGTATTGTAATGTGCAGTGCACTCTGTCACGGGGTGTTATTTGTTCATATGTTTTTTTGTGCAGAATGAAATGACATGATTTTTAACTTTGTTTGAAAGGGTAACTGCTATGGCTCTGGTTTGGCAATATGGAGAAAAGTCGGGTTATGAATCTTGGAAGGGACTCTCCTGGGGTATGGTAAGTAATGTTGCTTAGTCGTGATCATTCATTTGTTGTGCAGATGCTTTTGCTTTTGGAAGTCATATTTTGATCAAAATTTCGTGCTCTAGGTTTGCAATATTGAATCTTCTTTCTGTCGATGAGCTTGACATGACTGTAAATACTTTTTGAAAATGACTTCTCTTAATATGTTGAAAATTTCAGTTTAATTGATGAATGTTATATTGTCCCTTCTCGATATCTATTTACCTATTGTTAAGTGAGATAGAAGCTTAAGTCTTTCCCTAAAAATGGCAGTTGAACTCAAAAACTCTAGAAAGAACAATTTTCGAAATATTTTTGTTGCTCAAAGGAAAAAACTTCCTATGGTATGTACTATAGAGAACTTGAAAAAAAATAAGTTGGCTGTTTACATATGTGAAATCTGTAAAGCGAGTCTAGTCTCAGGTTCAAAACTCATCAGAGGCAAAACACTGTTGTGATTTCTTTCCAATCTGCATAAACCTTGGTGGACAGAGTTATGAGGTACCTATGTTCGTAGGAGGTAAACGGTACCTGATGGAATTAGTCAAGGTGAACAAGTTGGCCCGAACACTGCTATCATAAGAAAAAAAAACTCTGTATGGTGAACTACATGCAAGCTTTGTGACATTTGTACATTCTTTCTTTGCGATATATTAGAGTCGCAGAACTCTGATCAGTGCCTATATCTGGTCCAATAGAAATGGCTGTTATGCATAAATAGCATTCTTCTGGAAGTAGAAAAGTAGATAACAGTCTTTCCTGTTAATTAAAAGTTCGTGTTCTCGTACATTTGATCAGACAATAGTCTAAATGTCTACTTCATTTAATTCTTGTTTATGGATTGGGATTGGGTTAACTTAATTAGTCGATCAACGTTTTACTACCATACAGTAATGAAAACAAATTATAAGAGGCTGAAATGAATATATTATCGCTGTCAGCCTATTATTGCAGTGAGTTTTTTCCTTCTTTGATGATTCCGATTATCTCCCACTAATCCATTTCCCCGATTCAACCAATCCCAAACCTTACGGGAAATAGTTGTGTCTTGATTGATTCATGACTAACTCTTTTAGGAAGAAGTATGAAGTCTTTTTTCCCCCTCTATTTTATTATGTTTTTCAATACTATCCTCAGCCAAAAGCAACAATAACAATTACGCCTCAATCCGAAACAGGTATTTTCAACCAAGATACACGATTTAAACTTGTTTATGACATGCTGTCCAACTGTGAAATGCTTCATAGAGAGCGGTGGCGGAAAACATGTACATGTGATATAATTTGTTGAGGTTACACTCCCATCACAGTGCTACTGTAATCCATATATATTGTTGGCGGCTATCCCGTGAAGTTTAGAACTTCTTGCTCTTCAGGTTTCTTTTTTCACTTTCTTACCTTTCTCATGTCATGGACAACGTAGTTCAAATGTCGAAATTTTGTTGATTTTGATTATTGAGTTTTTTGTTCTACTATTATCTAGTCAGTGACAAGACAGTAAAAATTAGAGCTTTTCAAGTTGTGAAAATGTTGTTTTTTCTTAACAAAGTGATGTACTTTTGTTTGACTGCTTATGCTGAGTTATCGCGTCACGCTTCTCTTTGATCATTTAGCAGTTATCTCCATTTCTTTTCTCCGATTTAGGTGCCCCTGCTTGGAGGAGCACTCTGTGCCTGCACTTGGCATTTCTTTTATAACTCGGAGTCTCTTGAGGTAAGTAGATGCAATTCTTTATCTAGAACGAAATTTATGAACTTCTCTTGGTAAAATATGATTGCGGATTCGCCCTAAACCATTCCCCTATGGGCAGCGGTTGATCTACTATGTTGGTTACAGGTTCAACTGAACTCAGTAGATCCTTATATTTAGAAATCTACTAAATCTATAAAGATATTTGACTGTGGACTCATTAGTATCGACTTGATATCACTGCAGGAGCTCGTAAACTTCAAATCCTGTAATCCACCTCTAATCGCGGAGATATGACTTAACGTTCCGTTTCCATGCATGATTTTCAGGTAGTAGTGGCTCTACAAGCAGCTTTGACAGTAATTGGTAATGCCACAATGTGCTTTGCAGCATTCCGGATATACAGATCAACACAGAACCAGTCAAAAGAACTGTGATCATCGTCTTTGAGTCATTTCACCCTACTAGATTCTCCGTCTAACTCGTACATAACGTAACGATCGTTGCTCCATGCTAAGAAATGGAAGAGTTTTTATAGCCAGTGTAGACCGGAGCTCTAAGCTAGGTCAAGAAAGCGGATTCAGAATTTTGAATTTGTATTGTTTAACTTTTAAGGTTCTTAGACTAAAACTCACTGTACATTTTTGAATTCGTGTACTCGAGATTCAAAATTTATAAATATTGATGGTTAAACCAAATTCT</genome_strand>
        <mrna_strand>GGACTCAATTCAATCACCAATGGCAGTTCCAATTTCATTATCCCTCTCAAAACTTCATTCTCTTCCAAATCCAAAACAAACCCAGTTCTCTTTTACACATAAAGATCCAAACTTTATCTTCTTTACAAGAAAAAAGACTCATTTTCCAGCACCCATTATCAGTAATTTGAAAAATGTTGCTGCAATTTTGGGTTTTTCTGGACTTGCTTTTACAACACTAATGGTGGGCTCAGCTTCTGGTTCTGAGTTAGGTTTAATGGGTTCTTCTTCTTTTCAATTCAATGAACCTTCTAATGCTCTGTCATTGCACACTTGGGCTAGTCATGTTTCCACTATTGTTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAACTGCTATGGCTCTGGTTTGGCAATATGGAGAAAAGTCGGGTTATGAATCTTGGAAGGGACTCTCCTGGGGTATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCCCTGCTTGGAGGAGCACTCTGTGCCTGCACTTGGCATTTCTTTTATAACTCGGAGTCTCTTGAG.................................................................................................................................................................................................................................................................................................................GTAGTAGTGGCTCTACAAGCAGCTTTGACAGTAATTGGTAATGCCACAATGTGCTTTGCAGCATTCCGGATATACAGATCAACACAGAACCAGTCAAAAGAACTGTGATCATCGTCTTTGAGTCATTTCACCCTACTAGATTCTCCGTCTAACTCGTACATAACGTAACGATCGTTGCTCCATGCTAAGAAATGGAAGAGTTTTTATAGCCAGTGTAGACCGGAGCTCTAAGCTAGGTCAAGAAAGCGGATTCAGAATTTTGAATTTGTATTGTTTAACTTTTAAGGTTCTTAGACTAAAACTCACTGTACATTTTTGAATTCGTGTACTCGAGATTCAAAATTTATAAATATTGATGGTTAAACCAAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256164" ref_strand="+" ref_description="SGN-E256164 [cLEG-37-K13]">
      <seq>aacaatggcagttccaatttcattatccctctcaaaacttcattctcttccaaatccaaaacaaacccagttctcttttacacataaagatccaaactttatcttctttacaagaaaaaagactcattttccagcacccattatcagtaatttgaaaaatgttgctgcaattttgggtttttctggacttgcttttacaacactaatggtgggctcagcttctggttctgagttaggtttaatgggttcttcttcttttcaattcaatgaaccttctaatgctctgtcattgcacacttgggctagtcatgtttccactattgttgaatgggtaactgctatggctctggtttggcaatatggagaaaagtcgggttatgaatcttggaagggactctcctggggtatggtattttcaaccaagatacacgatttaaacttgtttatgacatgctgtccaactgtgaaatgcttcatagagagcggtggcggaaaacatgtacatgtgatataatttgttgaggttacactcccatcacagtgctactgtaatccatatatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="118354" stop="121936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118654" g_stop="118983" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118984" i_stop="120219" i_length="1236">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120220" g_stop="120298" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="409" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120299" i_stop="121481" i_length="1183">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121482" g_stop="121636" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="564" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E256164" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118654" e_stop="118983"/>
          <exon e_start="120220" e_stop="120298"/>
          <exon e_start="121482" e_stop="121636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCAGTTCCAATTTCATTATCCCTCTCAAAACTTCATTCTCTTCCAAATCCAAAACAAACCCAGTTCTCTTTTACACATAAAGATCCAAACTTTATCTTCTTTACAAGAAAAAAGACTCATTTTCCAGCACCCATTATCAGTAATTTGAAAAATGTTGCTGCAATTTTGGGTTTTTCTGGACTTGCTTTTACAACACTAATGGTGGGCTCAGCTTCTGGTTCTGAGTTAGGTTTAATGGGTTCTTCTTCTTTTCAATTCAATGAACCTTCTAATGCTCTGTCATTGCACACTTGGGCTAGTCATGTTTCCACTATTGTTGAATGGTAATTTCTCTGTTCCTATTTTGTCTCACATATTTGACTTAATGAGAGTTTAAGATGTTAAATTGTGTTTTTTAAGATGTTAATTTTGGATTATACTTACTCCGTTTTGTATTACTTGACCCTTGTTGACGCATGACATTTTGAAACTCTAAATTTGACTACTATTACTTTATGTTGTTATTTAATATTACTAAGGATGGTATGGGAAAAAGGATTTTCTTGGCTTGCTAAAATGGAGAAGTAAAATGAGATGGAGGGAATTTATTATATGAGGTGGATCAAGATTTGAACTTTGAATTGAGGGTCCATTGGGAACGGTCTCCCTATCTTCACAAGGTAGGGGTAAGGCTACATACACGCCATCCTCTTCAGACTCCACTTGTGGTATTACATTGCGTATGTTATTGTTGTTGATCAAGATTTGAACTTTATAAGTTTGAGTTTGAGTTTGGGTGCTACCATAAAGCATTTGATTTATTGGATTCAAAATCTAGTACTTCTAGTTATTTTGTGAGTTTTCTTAAGAGTTAATTGGTCAAAAACACACCTAGGATATACCCATTTTTTGAGTTTCATATAGGAAATATCATCATCGTTCAGGTAGGAAAAGTAAACAATTGATAGTTGAGGTGTGTTTTGATGAATAACGGTGATAGTTTAGGTAGGAAATTCGCACACATGATAGTTTAGGTTTGAAACTCGAAAAATCGGAGTACTTTAGGTGTGTTTTTGACCCTTCTTTCTTTTCTTAATACATATACAAGGTTTGAGCAAACTCTATTGTGGTTCAAACCTGTTACATATACTATGCATCCACGGTTCGCCACAGCATATTTATAGGGAAAATGTTCAAATTTATCCATCTGTTAGGCAGAATTTACCACTTCATTATAAGGTAGAGATAAGGCTACAGACACTCTCGCCCTCCTCAGACTCCATTTCTCAGAAAAATGTCCAAAATTATTCCTGGTTTAAAGTAATAGTTAAAATATTAGTTTAACAGATGCTAAAACATTACATCAAAGCTCAAATTTGAATTATCAAAAATTACGGAAGTTTTATAGAAAATGGAATGGCATCAACCAATTTCATGACGTCCTAAAATGGAAAGGGTGTTATGTAAATTTGGGCAGAGGGGGTATTGTAATGTGCAGTGCACTCTGTCACGGGGTGTTATTTGTTCATATGTTTTTTTGTGCAGAATGAAATGACATGATTTTTAACTTTGTTTGAAAGGGTAACTGCTATGGCTCTGGTTTGGCAATATGGAGAAAAGTCGGGTTATGAATCTTGGAAGGGACTCTCCTGGGGTATGGTAAGTAATGTTGCTTAGTCGTGATCATTCATTTGTTGTGCAGATGCTTTTGCTTTTGGAAGTCATATTTTGATCAAAATTTCGTGCTCTAGGTTTGCAATATTGAATCTTCTTTCTGTCGATGAGCTTGACATGACTGTAAATACTTTTTGAAAATGACTTCTCTTAATATGTTGAAAATTTCAGTTTAATTGATGAATGTTATATTGTCCCTTCTCGATATCTATTTACCTATTGTTAAGTGAGATAGAAGCTTAAGTCTTTCCCTAAAAATGGCAGTTGAACTCAAAAACTCTAGAAAGAACAATTTTCGAAATATTTTTGTTGCTCAAAGGAAAAAACTTCCTATGGTATGTACTATAGAGAACTTGAAAAAAAATAAGTTGGCTGTTTACATATGTGAAATCTGTAAAGCGAGTCTAGTCTCAGGTTCAAAACTCATCAGAGGCAAAACACTGTTGTGATTTCTTTCCAATCTGCATAAACCTTGGTGGACAGAGTTATGAGGTACCTATGTTCGTAGGAGGTAAACGGTACCTGATGGAATTAGTCAAGGTGAACAAGTTGGCCCGAACACTGCTATCATAAGAAAAAAAAACTCTGTATGGTGAACTACATGCAAGCTTTGTGACATTTGTACATTCTTTCTTTGCGATATATTAGAGTCGCAGAACTCTGATCAGTGCCTATATCTGGTCCAATAGAAATGGCTGTTATGCATAAATAGCATTCTTCTGGAAGTAGAAAAGTAGATAACAGTCTTTCCTGTTAATTAAAAGTTCGTGTTCTCGTACATTTGATCAGACAATAGTCTAAATGTCTACTTCATTTAATTCTTGTTTATGGATTGGGATTGGGTTAACTTAATTAGTCGATCAACGTTTTACTACCATACAGTAATGAAAACAAATTATAAGAGGCTGAAATGAATATATTATCGCTGTCAGCCTATTATTGCAGTGAGTTTTTTCCTTCTTTGATGATTCCGATTATCTCCCACTAATCCATTTCCCCGATTCAACCAATCCCAAACCTTACGGGAAATAGTTGTGTCTTGATTGATTCATGACTAACTCTTTTAGGAAGAAGTATGAAGTCTTTTTTCCCCCTCTATTTTATTATGTTTTTCAATACTATCCTCAGCCAAAAGCAACAATAACAATTACGCCTCAATCCGAAACAGGTATTTTCAACCAAGATACACGATTTAAACTTGTTTATGACATGCTGTCCAACTGTGAAATGCTTCATAGAGAGCGGTGGCGGAAAACATGTACATGTGATATAATTTGTTGAGGTTACACTCCCATCACAGTGCTACTGTAATCCATATATATT</genome_strand>
        <mrna_strand>AACAATGGCAGTTCCAATTTCATTATCCCTCTCAAAACTTCATTCTCTTCCAAATCCAAAACAAACCCAGTTCTCTTTTACACATAAAGATCCAAACTTTATCTTCTTTACAAGAAAAAAGACTCATTTTCCAGCACCCATTATCAGTAATTTGAAAAATGTTGCTGCAATTTTGGGTTTTTCTGGACTTGCTTTTACAACACTAATGGTGGGCTCAGCTTCTGGTTCTGAGTTAGGTTTAATGGGTTCTTCTTCTTTTCAATTCAATGAACCTTCTAATGCTCTGTCATTGCACACTTGGGCTAGTCATGTTTCCACTATTGTTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAACTGCTATGGCTCTGGTTTGGCAATATGGAGAAAAGTCGGGTTATGAATCTTGGAAGGGACTCTCCTGGGGTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTCAACCAAGATACACGATTTAAACTTGTTTATGACATGCTGTCCAACTGTGAAATGCTTCATAGAGAGCGGTGGCGGAAAACATGTACATGTGATATAATTTGTTGAGGTTACACTCCCATCACAGTGCTACTGTAATCCATATATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546612" ref_strand="+" ref_description="SGN-E546612 [TUS-70-B2]">
      <seq>atccctctcaaagcttcattttcttccaaatccaaaacaaacccaattctcttttacacataaagatccaaactttatcttctttactagaaaaaagactcattttccagcacccattatcagtaatttgaaaaatgttgctgcaattttgggtttttctggacttgcttttacaacactaatggtgggctcagcttctggttctgagttaggtttaatgggttcttcttcttttcaattcaatgaaccttctaatgctctgtcattgcacacttgggctagtcatgtttccactattgttgaatggtaatttctctgttcctattttgtctcacatatttgacttgatgagagttcaagatgttaaattgtgttttttaagatgttaatttggattatacttactctgttcccttgttgacatgacattttgaaactctaaatctgactactattactttatgttgttatttaatactaccaaggatggtatgggaaaaaaggattttcttcgcttgctaaaatggagaagtaaaatgatatggagggaatttattatatgaggttgatcaagatttgaactttgaattgagggtccattgggaatcatctccctatcttcacaaggtaggggtaaggctgcatacacgccattctctccaacctcacttgtgagattacattgcaaatgttgttgatcaagatttgaactttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="118378" stop="119692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118678" g_stop="119415" g_length="738"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E546612" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.031" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118678" e_stop="119415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCTCTCAAAACTTCATTCTCTTCCAAATCCAAAACAAACCCAGTTCTCTTTTACACATAAAGATCCAAACTTTATCTTCTTTACAAGAAAAAAGACTCATTTTCCAGCACCCATTATCAGTAATTTGAAAAATGTTGCTGCAATTTTGGGTTTTTCTGGACTTGCTTTTACAACACTAATGGTGGGCTCAGCTTCTGGTTCTGAGTTAGGTTTAATGGGTTCTTCTTCTTTTCAATTCAATGAACCTTCTAATGCTCTGTCATTGCACACTTGGGCTAGTCATGTTTCCACTATTGTTGAATGGTAATTTCTCTGTTCCTATTTTGTCTCACATATTTGACTTAATGAGAGTTTAAGATGTTAAATTGTGTTTTTTAAGATGTTAATTTTGGATTATACTTACTCCGTTTTGTATTACTTGACCCTTGTTGACGCATGACATTTTGAAACTCTAAATTTGACTACTATTACTTTATGTTGTTATTTAATATTACTAAGGATGGTATGGG-AAAAAGGATTTTCTTGGCTTGCTAAAATGGAGAAGTAAAATGAGATGGAGGGAATTTATTATATGAGGTGGATCAAGATTTGAACTTTGAATTGAGGGTCCATTGGGAACGGTCTCCCTATCTTCACAAGGTAGGGGTAAGGCTACATACACGCCATCCTCTTCAGACTCCACTTGTGGTATTACATTGCGTATGTTATTGTTGTTGATCAAGATTTGAACTTTAT</genome_strand>
        <mrna_strand>ATCCCTCTCAAAGCTTCATTTTCTTCCAAATCCAAAACAAACCCAATTCTCTTTTACACATAAAGATCCAAACTTTATCTTCTTTACTAGAAAAAAGACTCATTTTCCAGCACCCATTATCAGTAATTTGAAAAATGTTGCTGCAATTTTGGGTTTTTCTGGACTTGCTTTTACAACACTAATGGTGGGCTCAGCTTCTGGTTCTGAGTTAGGTTTAATGGGTTCTTCTTCTTTTCAATTCAATGAACCTTCTAATGCTCTGTCATTGCACACTTGGGCTAGTCATGTTTCCACTATTGTTGAATGGTAATTTCTCTGTTCCTATTTTGTCTCACATATTTGACTTGATGAGAGTTCAAGATGTTAAATTGTGTTTTTTAAGATGTTAA-TTTGGATTATACTTACT-C----TG------TT--CCCTTGTTGA--CATGACATTTTGAAACTCTAAATCTGACTACTATTACTTTATGTTGTTATTTAATACTACCAAGGATGGTATGGGAAAAAAGGATTTTCTTCGCTTGCTAAAATGGAGAAGTAAAATGATATGGAGGGAATTTATTATATGAGGTTGATCAAGATTTGAACTTTGAATTGAGGGTCCATTGGGAATCATCTCCCTATCTTCACAAGGTAGGGGTAAGGCTGCATACACGCCATTCTCTCCA-ACCTCACTTGTGAGATTACATTGC--A----AATGTTGTTGATCAAGATTTGAACTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549413" ref_strand="+" ref_description="SGN-E549413 [TUS-70-D1]">
      <seq>atccctctcaaagcttcattttcttccaaatccaaaacaaacccaattctcttttacacataaagatccaaactttatcttctttactagaaaaaagactcattttccagcacccattatcagtaatttgaaaaatgttgctgcaattttgggtttttctggacttgcttttacaacactaatggtgggctcagcttctggttctgagttaggtttaatgggttcttcttcttttcaattcaatgaaccttctaatgctctgtcattgcacacttgggctagtcatgtttccactattgttgaatggtaatttctctgttcctattttgtctcacatatttgacttgatgagagttcaagatgttaaattgtgttttttaagatgttaatttggattatacttactctgttcccttgttgacatgacattttgaaactctaaatctgactactattactttatgttgttatttaatactaccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="118378" stop="119477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118678" g_stop="119177" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E549413" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.033" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118678" e_stop="119177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCTCTCAAAACTTCATTCTCTTCCAAATCCAAAACAAACCCAGTTCTCTTTTACACATAAAGATCCAAACTTTATCTTCTTTACAAGAAAAAAGACTCATTTTCCAGCACCCATTATCAGTAATTTGAAAAATGTTGCTGCAATTTTGGGTTTTTCTGGACTTGCTTTTACAACACTAATGGTGGGCTCAGCTTCTGGTTCTGAGTTAGGTTTAATGGGTTCTTCTTCTTTTCAATTCAATGAACCTTCTAATGCTCTGTCATTGCACACTTGGGCTAGTCATGTTTCCACTATTGTTGAATGGTAATTTCTCTGTTCCTATTTTGTCTCACATATTTGACTTAATGAGAGTTTAAGATGTTAAATTGTGTTTTTTAAGATGTTAATTTTGGATTATACTTACTCCGTTTTGTATTACTTGACCCTTGTTGACGCATGACATTTTGAAACTCTAAATTTGACTACTATTACTTTATGTTGTTATTTAATATTACTAA</genome_strand>
        <mrna_strand>ATCCCTCTCAAAGCTTCATTTTCTTCCAAATCCAAAACAAACCCAATTCTCTTTTACACATAAAGATCCAAACTTTATCTTCTTTACTAGAAAAAAGACTCATTTTCCAGCACCCATTATCAGTAATTTGAAAAATGTTGCTGCAATTTTGGGTTTTTCTGGACTTGCTTTTACAACACTAATGGTGGGCTCAGCTTCTGGTTCTGAGTTAGGTTTAATGGGTTCTTCTTCTTTTCAATTCAATGAACCTTCTAATGCTCTGTCATTGCACACTTGGGCTAGTCATGTTTCCACTATTGTTGAATGGTAATTTCTCTGTTCCTATTTTGTCTCACATATTTGACTTGATGAGAGTTCAAGATGTTAAATTGTGTTTTTTAAGATGTTAA-TTTGGATTATACTTACT-C----TG------TT--CCCTTGTTGA--CATGACATTTTGAAACTCTAAATCTGACTACTATTACTTTATGTTGTTATTTAATACTACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359490" ref_strand="+" ref_description="SGN-E359490 [cLHT-31-P1]">
      <seq>tccctctcaaagcttcattttcttccaaatccaaaacaaacgcaattctctggtacacataaagatccaaactttatcttctttactagaaaaaagactcattttccagcacccattatcagtaatttgaaaaatgttgctgcaattttgggtttttctggacttgcttttacaacactaatggtgggctcagcttctggttctgagttaggtttaatgggttcttcttcttttcaattcaatgaaccttctaatgctctgtcattgcacacttgggctagtcatgtttccactattgttgaatggtaatttctctgttcctattttgtctcacatatttgacttgatgagagttcaagatgttaaattgtgttttttaagatgttaatttggattatacttactctgttcccttgttgacatgacattttgaaactctaaatctgactactattactttatgttgttatttaatactaccaaggatggtatgggaaaaaaggattttcttcgcttgctaaaatggagaagtgaaatgatatggagggaatctattatatgacgttgatcaagatttgaactttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="118379" stop="119580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118679" g_stop="119280" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E359490" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.026" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118679" e_stop="119280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTCTCAAAACTTCATTCTCTTCCAAATCCAAAACAAACCCAGTTCTCTTTTACACATAAAGATCCAAACTTTATCTTCTTTACAAGAAAAAAGACTCATTTTCCAGCACCCATTATCAGTAATTTGAAAAATGTTGCTGCAATTTTGGGTTTTTCTGGACTTGCTTTTACAACACTAATGGTGGGCTCAGCTTCTGGTTCTGAGTTAGGTTTAATGGGTTCTTCTTCTTTTCAATTCAATGAACCTTCTAATGCTCTGTCATTGCACACTTGGGCTAGTCATGTTTCCACTATTGTTGAATGGTAATTTCTCTGTTCCTATTTTGTCTCACATATTTGACTTAATGAGAGTTTAAGATGTTAAATTGTGTTTTTTAAGATGTTAATTTTGGATTATACTTACTCCGTTTTGTATTACTTGACCCTTGTTGACGCATGACATTTTGAAACTCTAAATTTGACTACTATTACTTTATGTTGTTATTTAATATTACTAAGGATGGTATGGG-AAAAAGGATTTTCTTGGCTTGCTAAAATGGAGAAGTAAAATGAGATGGAGGGAATTTATTATATGAGGTGGATCAAGATTTGAACTTTGAA</genome_strand>
        <mrna_strand>TCCCTCTCAAAGCTTCATTTTCTTCCAAATCCAAAACAAACGCAATTCTCTGGTACACATAAAGATCCAAACTTTATCTTCTTTACTAGAAAAAAGACTCATTTTCCAGCACCCATTATCAGTAATTTGAAAAATGTTGCTGCAATTTTGGGTTTTTCTGGACTTGCTTTTACAACACTAATGGTGGGCTCAGCTTCTGGTTCTGAGTTAGGTTTAATGGGTTCTTCTTCTTTTCAATTCAATGAACCTTCTAATGCTCTGTCATTGCACACTTGGGCTAGTCATGTTTCCACTATTGTTGAATGGTAATTTCTCTGTTCCTATTTTGTCTCACATATTTGACTTGATGAGAGTTCAAGATGTTAAATTGTGTTTTTTAAGATGTTAA-TTTGGATTATACTTACT-C----TG------TT--CCCTTGTTGA--CATGACATTTTGAAACTCTAAATCTGACTACTATTACTTTATGTTGTTATTTAATACTACCAAGGATGGTATGGGAAAAAAGGATTTTCTTCGCTTGCTAAAATGGAGAAGTGAAATGATATGGAGGGAATCTATTATATGACGTTGATCAAGATTTGAACTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357710" ref_strand="+" ref_description="SGN-E357710 [cTOS-24-J17]">
      <seq>tggaagggactctcctggggtatggtgcccctgcttggaggagcactctgtgcctgcacttggcatttcttttataactcggagtctcttgaggtagtagtggctctacaagcagctttgacagtaattggtaatgccacaatgtgctttgcagcattccggatatacagatcaacacagaaccagtcaaaagaactgtgatcatcgtctttgagtcatttcaccctactagattctccgtctaactcgtacataacgtaacgatcgttgctccatgctaagaaatggaagagtttttatagccagtgtagaccggagctctaagctaggtcaagaaagcggattcagaattttgaatttgtattgtttaacttttaaggttcttagactaaaactcactgtacatttttgaattcgtgtactcgagattcaaaatttataaatattgatggttaaaccaaaanaaaaaaaaaaaaaaaaaaaanaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="119975" stop="122911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120275" g_stop="120298" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120299" i_stop="121947" i_length="1649">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121948" g_stop="122016" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="93" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122017" i_stop="122321" i_length="305">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122322" g_stop="122689" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="461" r_length="368" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="462" polyA_stop="484"/>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E357710" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120275" e_stop="120298"/>
          <exon e_start="121948" e_stop="122016"/>
          <exon e_start="122322" e_stop="122689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGGGACTCTCCTGGGGTATGGTAAGTAATGTTGCTTAGTCGTGATCATTCATTTGTTGTGCAGATGCTTTTGCTTTTGGAAGTCATATTTTGATCAAAATTTCGTGCTCTAGGTTTGCAATATTGAATCTTCTTTCTGTCGATGAGCTTGACATGACTGTAAATACTTTTTGAAAATGACTTCTCTTAATATGTTGAAAATTTCAGTTTAATTGATGAATGTTATATTGTCCCTTCTCGATATCTATTTACCTATTGTTAAGTGAGATAGAAGCTTAAGTCTTTCCCTAAAAATGGCAGTTGAACTCAAAAACTCTAGAAAGAACAATTTTCGAAATATTTTTGTTGCTCAAAGGAAAAAACTTCCTATGGTATGTACTATAGAGAACTTGAAAAAAAATAAGTTGGCTGTTTACATATGTGAAATCTGTAAAGCGAGTCTAGTCTCAGGTTCAAAACTCATCAGAGGCAAAACACTGTTGTGATTTCTTTCCAATCTGCATAAACCTTGGTGGACAGAGTTATGAGGTACCTATGTTCGTAGGAGGTAAACGGTACCTGATGGAATTAGTCAAGGTGAACAAGTTGGCCCGAACACTGCTATCATAAGAAAAAAAAACTCTGTATGGTGAACTACATGCAAGCTTTGTGACATTTGTACATTCTTTCTTTGCGATATATTAGAGTCGCAGAACTCTGATCAGTGCCTATATCTGGTCCAATAGAAATGGCTGTTATGCATAAATAGCATTCTTCTGGAAGTAGAAAAGTAGATAACAGTCTTTCCTGTTAATTAAAAGTTCGTGTTCTCGTACATTTGATCAGACAATAGTCTAAATGTCTACTTCATTTAATTCTTGTTTATGGATTGGGATTGGGTTAACTTAATTAGTCGATCAACGTTTTACTACCATACAGTAATGAAAACAAATTATAAGAGGCTGAAATGAATATATTATCGCTGTCAGCCTATTATTGCAGTGAGTTTTTTCCTTCTTTGATGATTCCGATTATCTCCCACTAATCCATTTCCCCGATTCAACCAATCCCAAACCTTACGGGAAATAGTTGTGTCTTGATTGATTCATGACTAACTCTTTTAGGAAGAAGTATGAAGTCTTTTTTCCCCCTCTATTTTATTATGTTTTTCAATACTATCCTCAGCCAAAAGCAACAATAACAATTACGCCTCAATCCGAAACAGGTATTTTCAACCAAGATACACGATTTAAACTTGTTTATGACATGCTGTCCAACTGTGAAATGCTTCATAGAGAGCGGTGGCGGAAAACATGTACATGTGATATAATTTGTTGAGGTTACACTCCCATCACAGTGCTACTGTAATCCATATATATTGTTGGCGGCTATCCCGTGAAGTTTAGAACTTCTTGCTCTTCAGGTTTCTTTTTTCACTTTCTTACCTTTCTCATGTCATGGACAACGTAGTTCAAATGTCGAAATTTTGTTGATTTTGATTATTGAGTTTTTTGTTCTACTATTATCTAGTCAGTGACAAGACAGTAAAAATTAGAGCTTTTCAAGTTGTGAAAATGTTGTTTTTTCTTAACAAAGTGATGTACTTTTGTTTGACTGCTTATGCTGAGTTATCGCGTCACGCTTCTCTTTGATCATTTAGCAGTTATCTCCATTTCTTTTCTCCGATTTAGGTGCCCCTGCTTGGAGGAGCACTCTGTGCCTGCACTTGGCATTTCTTTTATAACTCGGAGTCTCTTGAGGTAAGTAGATGCAATTCTTTATCTAGAACGAAATTTATGAACTTCTCTTGGTAAAATATGATTGCGGATTCGCCCTAAACCATTCCCCTATGGGCAGCGGTTGATCTACTATGTTGGTTACAGGTTCAACTGAACTCAGTAGATCCTTATATTTAGAAATCTACTAAATCTATAAAGATATTTGACTGTGGACTCATTAGTATCGACTTGATATCACTGCAGGAGCTCGTAAACTTCAAATCCTGTAATCCACCTCTAATCGCGGAGATATGACTTAACGTTCCGTTTCCATGCATGATTTTCAGGTAGTAGTGGCTCTACAAGCAGCTTTGACAGTAATTGGTAATGCCACAATGTGCTTTGCAGCATTCCGGATATACAGATCAACACAGAACCAGTCAAAAGAACTGTGATCATCGTCTTTGAGTCATTTCACCCTACTAGATTCTCCGTCTAACTCGTACATAACGTAACGATCGTTGCTCCATGCTAAGAAATGGAAGAGTTTTTATAGCCAGTGTAGACCGGAGCTCTAAGCTAGGTCAAGAAAGCGGATTCAGAATTTTGAATTTGTATTGTTTAACTTTTAAGGTTCTTAGACTAAAACTCACTGTACATTTTTGAATTCGTGTACTCGAGATTCAAAATTTATAAATATTGATGGTTAAACCAA</genome_strand>
        <mrna_strand>TGGAAGGGACTCTCCTGGGGTATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCCCTGCTTGGAGGAGCACTCTGTGCCTGCACTTGGCATTTCTTTTATAACTCGGAGTCTCTTGAG.................................................................................................................................................................................................................................................................................................................GTAGTAGTGGCTCTACAAGCAGCTTTGACAGTAATTGGTAATGCCACAATGTGCTTTGCAGCATTCCGGATATACAGATCAACACAGAACCAGTCAAAAGAACTGTGATCATCGTCTTTGAGTCATTTCACCCTACTAGATTCTCCGTCTAACTCGTACATAACGTAACGATCGTTGCTCCATGCTAAGAAATGGAAGAGTTTTTATAGCCAGTGTAGACCGGAGCTCTAAGCTAGGTCAAGAAAGCGGATTCAGAATTTTGAATTTGTATTGTTTAACTTTTAAGGTTCTTAGACTAAAACTCACTGTACATTTTTGAATTCGTGTACTCGAGATTCAAAATTTATAAATATTGATGGTTAAACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378256" ref_strand="+" ref_description="SGN-E378256 [TUS-20-H7]">
      <seq>caaattataagaggctgaaatgaatatattatcgctgtcagcctattattgcagtgagttttttccttctttgatgattccgattatctcccactaatccatttccccgattcaaccaatcccaaaccttacgggaaatagttgtgtcttgattgattcatgactaactcttttaggaagaagtatgaagtcttttttccccctctattttattatgtttttcaatactatcctcagccaaaagcaacaataacaattacgcctcaatccgaaacaggtattttcaaccaagatacacgatttaaacttgtttatgacatgctgtccaactgtgaaatgcttcatagagagcggtggcggaaaacatgtacatgtgatataatttgttgaggttacactcccatcacagtgctactgtaatccatatatattgttggcggctatcccgtgaagtttagaacttcttgctcttcaggtttcttttttcactttcttacctttctcatgtcatggacaacgtagttcaaatgtcgaaattttgttgattttgattattgagtttttttgttctactattatctagtcagtgacaagacagtaaaaattagagcttttcaagttgtgaaaatgttgttttttcttaacaaagtgatgtacttttgtttgactgcttatgctgagttatcgcgtcacgcttctctttgatcatttagcagttatctccatttcttttctccgatttaggtgcccctgcttggnagagcactctgtgcctgcacttggcatttcttttataactcggagtctcttgaggtagtagtggctctacaagcagctttgacagtaattggtaatgccacaatgtgctttgcagcattccggatatacagatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="120905" stop="122703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121205" g_stop="122016" g_length="812"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="813" r_length="813" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122017" i_stop="122321" i_length="305">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122322" g_stop="122403" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="814" r_stop="895" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E378256" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121205" e_stop="122016"/>
          <exon e_start="122322" e_stop="122403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTATAAGAGGCTGAAATGAATATATTATCGCTGTCAGCCTATTATTGCAGTGAGTTTTTTCCTTCTTTGATGATTCCGATTATCTCCCACTAATCCATTTCCCCGATTCAACCAATCCCAAACCTTACGGGAAATAGTTGTGTCTTGATTGATTCATGACTAACTCTTTTAGGAAGAAGTATGAAGTCTTTTTTCCCCCTCTATTTTATTATGTTTTTCAATACTATCCTCAGCCAAAAGCAACAATAACAATTACGCCTCAATCCGAAACAGGTATTTTCAACCAAGATACACGATTTAAACTTGTTTATGACATGCTGTCCAACTGTGAAATGCTTCATAGAGAGCGGTGGCGGAAAACATGTACATGTGATATAATTTGTTGAGGTTACACTCCCATCACAGTGCTACTGTAATCCATATATATTGTTGGCGGCTATCCCGTGAAGTTTAGAACTTCTTGCTCTTCAGGTTTCTTTTTTCACTTTCTTACCTTTCTCATGTCATGGACAACGTAGTTCAAATGTCGAAATTTTGTTGATTTTGATTATTGAG-TTTTTTGTTCTACTATTATCTAGTCAGTGACAAGACAGTAAAAATTAGAGCTTTTCAAGTTGTGAAAATGTTGTTTTTTCTTAACAAAGTGATGTACTTTTGTTTGACTGCTTATGCTGAGTTATCGCGTCACGCTTCTCTTTGATCATTTAGCAGTTATCTCCATTTCTTTTCTCCGATTTAGGTGCCCCTGCTTGGAGGAGCACTCTGTGCCTGCACTTGGCATTTCTTTTATAACTCGGAGTCTCTTGAGGTAAGTAGATGCAATTCTTTATCTAGAACGAAATTTATGAACTTCTCTTGGTAAAATATGATTGCGGATTCGCCCTAAACCATTCCCCTATGGGCAGCGGTTGATCTACTATGTTGGTTACAGGTTCAACTGAACTCAGTAGATCCTTATATTTAGAAATCTACTAAATCTATAAAGATATTTGACTGTGGACTCATTAGTATCGACTTGATATCACTGCAGGAGCTCGTAAACTTCAAATCCTGTAATCCACCTCTAATCGCGGAGATATGACTTAACGTTCCGTTTCCATGCATGATTTTCAGGTAGTAGTGGCTCTACAAGCAGCTTTGACAGTAATTGGTAATGCCACAATGTGCTTTGCAGCATTCCGGATATACAGATCAA</genome_strand>
        <mrna_strand>CAAATTATAAGAGGCTGAAATGAATATATTATCGCTGTCAGCCTATTATTGCAGTGAGTTTTTTCCTTCTTTGATGATTCCGATTATCTCCCACTAATCCATTTCCCCGATTCAACCAATCCCAAACCTTACGGGAAATAGTTGTGTCTTGATTGATTCATGACTAACTCTTTTAGGAAGAAGTATGAAGTCTTTTTTCCCCCTCTATTTTATTATGTTTTTCAATACTATCCTCAGCCAAAAGCAACAATAACAATTACGCCTCAATCCGAAACAGGTATTTTCAACCAAGATACACGATTTAAACTTGTTTATGACATGCTGTCCAACTGTGAAATGCTTCATAGAGAGCGGTGGCGGAAAACATGTACATGTGATATAATTTGTTGAGGTTACACTCCCATCACAGTGCTACTGTAATCCATATATATTGTTGGCGGCTATCCCGTGAAGTTTAGAACTTCTTGCTCTTCAGGTTTCTTTTTTCACTTTCTTACCTTTCTCATGTCATGGACAACGTAGTTCAAATGTCGAAATTTTGTTGATTTTGATTATTGAGTTTTTTTGTTCTACTATTATCTAGTCAGTGACAAGACAGTAAAAATTAGAGCTTTTCAAGTTGTGAAAATGTTGTTTTTTCTTAACAAAGTGATGTACTTTTGTTTGACTGCTTATGCTGAGTTATCGCGTCACGCTTCTCTTTGATCATTTAGCAGTTATCTCCATTTCTTTTCTCCGATTTAGGTGCCCCTGCTTGGNAGAGCACTCTGTGCCTGCACTTGGCATTTCTTTTATAACTCGGAGTCTCTTGAG.................................................................................................................................................................................................................................................................................................................GTAGTAGTGGCTCTACAAGCAGCTTTGACAGTAATTGGTAATGCCACAATGTGCTTTGCAGCATTCCGGATATACAGATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235419" ref_strand="+" ref_description="SGN-E235419 [cLED-11-N16]">
      <seq>caaattataagaggctgaaatgaatatattatcgctgtcagcctattattgcagtgagttttttccttctttgatgattccgattatctcccactaatccatttccccgattcaaccaatcccaaaccttacgggaaatagttgtgtcttgattgattcatgactaactcttttaggaagaagtatgaagtcttttttccccctctattttattatgtttttcaatactatcctcagccaaaagcaacaataacaattacgcctcaatccgaaacaggtattttcaaccaagatacacgatttaaacttgtttatgacatgctgtccaactgtgaaatgcttcatagagagcggtggcggaaaacatgtacatgtgatataatttgttgaggttacactcccatcacagtgctactgtaatccatatatattgttggcggctatcccgtgaagtttagaacttcttgctcttcaggtttcttttttcactttcttacctttctcatgtcatggacaacgtagttcaaatgtcgaaattttgttgattttgattattgagtttttttgttctactattatctagtcagtgacaagacagtaaaaattagagcttttcaagttgtgaaaatgttgttttttcttaacaaagtgatgtacttttgtttgactgcttatgctgagttatcgcgtcacgcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="120905" stop="122202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121205" g_stop="121902" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E235419" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121205" e_stop="121902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTATAAGAGGCTGAAATGAATATATTATCGCTGTCAGCCTATTATTGCAGTGAGTTTTTTCCTTCTTTGATGATTCCGATTATCTCCCACTAATCCATTTCCCCGATTCAACCAATCCCAAACCTTACGGGAAATAGTTGTGTCTTGATTGATTCATGACTAACTCTTTTAGGAAGAAGTATGAAGTCTTTTTTCCCCCTCTATTTTATTATGTTTTTCAATACTATCCTCAGCCAAAAGCAACAATAACAATTACGCCTCAATCCGAAACAGGTATTTTCAACCAAGATACACGATTTAAACTTGTTTATGACATGCTGTCCAACTGTGAAATGCTTCATAGAGAGCGGTGGCGGAAAACATGTACATGTGATATAATTTGTTGAGGTTACACTCCCATCACAGTGCTACTGTAATCCATATATATTGTTGGCGGCTATCCCGTGAAGTTTAGAACTTCTTGCTCTTCAGGTTTCTTTTTTCACTTTCTTACCTTTCTCATGTCATGGACAACGTAGTTCAAATGTCGAAATTTTGTTGATTTTGATTATTGAG-TTTTTTGTTCTACTATTATCTAGTCAGTGACAAGACAGTAAAAATTAGAGCTTTTCAAGTTGTGAAAATGTTGTTTTTTCTTAACAAAGTGATGTACTTTTGTTTGACTGCTTATGCTGAGTTATCGCGTCACGCTTCT</genome_strand>
        <mrna_strand>CAAATTATAAGAGGCTGAAATGAATATATTATCGCTGTCAGCCTATTATTGCAGTGAGTTTTTTCCTTCTTTGATGATTCCGATTATCTCCCACTAATCCATTTCCCCGATTCAACCAATCCCAAACCTTACGGGAAATAGTTGTGTCTTGATTGATTCATGACTAACTCTTTTAGGAAGAAGTATGAAGTCTTTTTTCCCCCTCTATTTTATTATGTTTTTCAATACTATCCTCAGCCAAAAGCAACAATAACAATTACGCCTCAATCCGAAACAGGTATTTTCAACCAAGATACACGATTTAAACTTGTTTATGACATGCTGTCCAACTGTGAAATGCTTCATAGAGAGCGGTGGCGGAAAACATGTACATGTGATATAATTTGTTGAGGTTACACTCCCATCACAGTGCTACTGTAATCCATATATATTGTTGGCGGCTATCCCGTGAAGTTTAGAACTTCTTGCTCTTCAGGTTTCTTTTTTCACTTTCTTACCTTTCTCATGTCATGGACAACGTAGTTCAAATGTCGAAATTTTGTTGATTTTGATTATTGAGTTTTTTTGTTCTACTATTATCTAGTCAGTGACAAGACAGTAAAAATTAGAGCTTTTCAAGTTGTGAAAATGTTGTTTTTTCTTAACAAAGTGATGTACTTTTGTTTGACTGCTTATGCTGAGTTATCGCGTCACGCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377849" ref_strand="+" ref_description="SGN-E377849 [TUS-21-L11]">
      <seq>caaattataagaggctgaaatgaatatattatcgctgtcagcctattattgcagtgagttttttccttctttgatgattccgattatctcccactaatccatttccccgattcaaccaatcccaaaccttacgggaaatagttgtgtcttgattgattcatgactaactcttttaggaagaagtatgaagtcttttttccccctctattttattatgtttttcaatactatcctcagccaaaagcaacaataacaattacgcctcaatccgaaacaggtattttcaaccaagatacacgatttaaacttgtttatgacatgctgtccaactgtgaaatgcttcatagagagcggtggcggaaaacatgtacatgtgatataatttgttgaggttacactcccatcacagtgctactgtaatccatatatattgttggcggctatcccgtgaagtttagaacttcttgctcttcaggtttcttttttcactttcttacctttctcatgtcatggacaacgtagttcaaatgtcgaaattttgttgattttgattattgagtttttttgttctactattatctagtcagtgacaagacagtaaaaattagagcttttcaagttgtgaaaatgttgttttttcttaacaaagtgatgtacttttgtttgactgcttatgctgagttatcgcgtcacgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="120905" stop="122199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121205" g_stop="121899" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="696" r_length="696" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E377849" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121205" e_stop="121899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTATAAGAGGCTGAAATGAATATATTATCGCTGTCAGCCTATTATTGCAGTGAGTTTTTTCCTTCTTTGATGATTCCGATTATCTCCCACTAATCCATTTCCCCGATTCAACCAATCCCAAACCTTACGGGAAATAGTTGTGTCTTGATTGATTCATGACTAACTCTTTTAGGAAGAAGTATGAAGTCTTTTTTCCCCCTCTATTTTATTATGTTTTTCAATACTATCCTCAGCCAAAAGCAACAATAACAATTACGCCTCAATCCGAAACAGGTATTTTCAACCAAGATACACGATTTAAACTTGTTTATGACATGCTGTCCAACTGTGAAATGCTTCATAGAGAGCGGTGGCGGAAAACATGTACATGTGATATAATTTGTTGAGGTTACACTCCCATCACAGTGCTACTGTAATCCATATATATTGTTGGCGGCTATCCCGTGAAGTTTAGAACTTCTTGCTCTTCAGGTTTCTTTTTTCACTTTCTTACCTTTCTCATGTCATGGACAACGTAGTTCAAATGTCGAAATTTTGTTGATTTTGATTATTGAG-TTTTTTGTTCTACTATTATCTAGTCAGTGACAAGACAGTAAAAATTAGAGCTTTTCAAGTTGTGAAAATGTTGTTTTTTCTTAACAAAGTGATGTACTTTTGTTTGACTGCTTATGCTGAGTTATCGCGTCACGCT</genome_strand>
        <mrna_strand>CAAATTATAAGAGGCTGAAATGAATATATTATCGCTGTCAGCCTATTATTGCAGTGAGTTTTTTCCTTCTTTGATGATTCCGATTATCTCCCACTAATCCATTTCCCCGATTCAACCAATCCCAAACCTTACGGGAAATAGTTGTGTCTTGATTGATTCATGACTAACTCTTTTAGGAAGAAGTATGAAGTCTTTTTTCCCCCTCTATTTTATTATGTTTTTCAATACTATCCTCAGCCAAAAGCAACAATAACAATTACGCCTCAATCCGAAACAGGTATTTTCAACCAAGATACACGATTTAAACTTGTTTATGACATGCTGTCCAACTGTGAAATGCTTCATAGAGAGCGGTGGCGGAAAACATGTACATGTGATATAATTTGTTGAGGTTACACTCCCATCACAGTGCTACTGTAATCCATATATATTGTTGGCGGCTATCCCGTGAAGTTTAGAACTTCTTGCTCTTCAGGTTTCTTTTTTCACTTTCTTACCTTTCTCATGTCATGGACAACGTAGTTCAAATGTCGAAATTTTGTTGATTTTGATTATTGAGTTTTTTTGTTCTACTATTATCTAGTCAGTGACAAGACAGTAAAAATTAGAGCTTTTCAAGTTGTGAAAATGTTGTTTTTTCTTAACAAAGTGATGTACTTTTGTTTGACTGCTTATGCTGAGTTATCGCGTCACGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377774" ref_strand="+" ref_description="SGN-E377774 [TUS-21-J7]">
      <seq>caaattataagaggctgaaatgaatatattatcgctgtcagcctattattgcagtgagttttttccttctttgatgattccgattatctcccactaatccatttccccgattcaaccaatcccaaaccttacgggaaatagttgtgtcttgattgattcatgactaactcttttaggaagaagtatgaagtcttttttccccctctattttattatgtttttcaatactatcctcagccaaaagcaacaataacaattacgcctcaatccgaaacaggtattttcaaccaagatacacgatttaaacttgtttatgacatgctgtccaactgtgaaatgcttcatagagagcggtggcggaaaacatgtacatgtgatataatttgttgaggttacactcccatcacagtgctactgtaatccatatatattgttggcggctatcccgtgaagtttagaacttcttgctcttcaggtttcttttttcactttcttacctttctcatgtcatggacaacgtagttcaaatgtcgaaattttgttgattttgattattgagtttttttgttctactattatctagtcagtgacaagacagtaaaaattagagcttttcaagttgtgaaaatgttgttttttcttacaaagtgatgtacttttgtttgactgcttatgctgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="120905" stop="122185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121205" g_stop="121885" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E377774" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121205" e_stop="121885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTATAAGAGGCTGAAATGAATATATTATCGCTGTCAGCCTATTATTGCAGTGAGTTTTTTCCTTCTTTGATGATTCCGATTATCTCCCACTAATCCATTTCCCCGATTCAACCAATCCCAAACCTTACGGGAAATAGTTGTGTCTTGATTGATTCATGACTAACTCTTTTAGGAAGAAGTATGAAGTCTTTTTTCCCCCTCTATTTTATTATGTTTTTCAATACTATCCTCAGCCAAAAGCAACAATAACAATTACGCCTCAATCCGAAACAGGTATTTTCAACCAAGATACACGATTTAAACTTGTTTATGACATGCTGTCCAACTGTGAAATGCTTCATAGAGAGCGGTGGCGGAAAACATGTACATGTGATATAATTTGTTGAGGTTACACTCCCATCACAGTGCTACTGTAATCCATATATATTGTTGGCGGCTATCCCGTGAAGTTTAGAACTTCTTGCTCTTCAGGTTTCTTTTTTCACTTTCTTACCTTTCTCATGTCATGGACAACGTAGTTCAAATGTCGAAATTTTGTTGATTTTGATTATTGAG-TTTTTTGTTCTACTATTATCTAGTCAGTGACAAGACAGTAAAAATTAGAGCTTTTCAAGTTGTGAAAATGTTGTTTTTTCTTAACAAAGTGATGTACTTTTGTTTGACTGCTTATGCTGAGT</genome_strand>
        <mrna_strand>CAAATTATAAGAGGCTGAAATGAATATATTATCGCTGTCAGCCTATTATTGCAGTGAGTTTTTTCCTTCTTTGATGATTCCGATTATCTCCCACTAATCCATTTCCCCGATTCAACCAATCCCAAACCTTACGGGAAATAGTTGTGTCTTGATTGATTCATGACTAACTCTTTTAGGAAGAAGTATGAAGTCTTTTTTCCCCCTCTATTTTATTATGTTTTTCAATACTATCCTCAGCCAAAAGCAACAATAACAATTACGCCTCAATCCGAAACAGGTATTTTCAACCAAGATACACGATTTAAACTTGTTTATGACATGCTGTCCAACTGTGAAATGCTTCATAGAGAGCGGTGGCGGAAAACATGTACATGTGATATAATTTGTTGAGGTTACACTCCCATCACAGTGCTACTGTAATCCATATATATTGTTGGCGGCTATCCCGTGAAGTTTAGAACTTCTTGCTCTTCAGGTTTCTTTTTTCACTTTCTTACCTTTCTCATGTCATGGACAACGTAGTTCAAATGTCGAAATTTTGTTGATTTTGATTATTGAGTTTTTTTGTTCTACTATTATCTAGTCAGTGACAAGACAGTAAAAATTAGAGCTTTTCAAGTTGTGAAAATGTTGTTTTTTCTT-ACAAAGTGATGTACTTTTGTTTGACTGCTTATGCTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377477" ref_strand="+" ref_description="SGN-E377477 [TUS-20-H7]">
      <seq>caaattataagaggctgaaatgaatatattatcgctgtcagcctattattgcagtgagttttttccttctttgatgattccgattatctcccactaatccatttccccgattcaaccaatcccaaaccttacgggaaatagttgtgtcttgattgattcatgactaactcttttaggaagaagtatgaagtcttttttccccctctattttattatgtttttcaatactatcctcagccaaaagcaacaataacaattacgcctcaatccgaaacaggtattttcaaccaagatacacgatttaaacttgtttatgacatgctgtccaactgtgaaatgcttcatagagagcggtggcggaaaacatgtacatgtgatataatttgttgaggttacactcccatcacagtgctactgtaatccatatatattgttggcggctatcccgtgaagtttagaacttcttgctcttcaggtttcttttttcactttcttacctttctcatgtcatggacaacgtagttcaaatgtcgaaattttgttgattttgattattgagtttttttgttctactattatctagtcagtgacaagacagtaaaaattagagcttttcaagttgtgaaaatgttgttttttcttaacaaagtgatgtacttttgtttgactgcttatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="120905" stop="122181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121205" g_stop="121881" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="678" r_length="678" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E377477" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121205" e_stop="121881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTATAAGAGGCTGAAATGAATATATTATCGCTGTCAGCCTATTATTGCAGTGAGTTTTTTCCTTCTTTGATGATTCCGATTATCTCCCACTAATCCATTTCCCCGATTCAACCAATCCCAAACCTTACGGGAAATAGTTGTGTCTTGATTGATTCATGACTAACTCTTTTAGGAAGAAGTATGAAGTCTTTTTTCCCCCTCTATTTTATTATGTTTTTCAATACTATCCTCAGCCAAAAGCAACAATAACAATTACGCCTCAATCCGAAACAGGTATTTTCAACCAAGATACACGATTTAAACTTGTTTATGACATGCTGTCCAACTGTGAAATGCTTCATAGAGAGCGGTGGCGGAAAACATGTACATGTGATATAATTTGTTGAGGTTACACTCCCATCACAGTGCTACTGTAATCCATATATATTGTTGGCGGCTATCCCGTGAAGTTTAGAACTTCTTGCTCTTCAGGTTTCTTTTTTCACTTTCTTACCTTTCTCATGTCATGGACAACGTAGTTCAAATGTCGAAATTTTGTTGATTTTGATTATTGAG-TTTTTTGTTCTACTATTATCTAGTCAGTGACAAGACAGTAAAAATTAGAGCTTTTCAAGTTGTGAAAATGTTGTTTTTTCTTAACAAAGTGATGTACTTTTGTTTGACTGCTTATGCT</genome_strand>
        <mrna_strand>CAAATTATAAGAGGCTGAAATGAATATATTATCGCTGTCAGCCTATTATTGCAGTGAGTTTTTTCCTTCTTTGATGATTCCGATTATCTCCCACTAATCCATTTCCCCGATTCAACCAATCCCAAACCTTACGGGAAATAGTTGTGTCTTGATTGATTCATGACTAACTCTTTTAGGAAGAAGTATGAAGTCTTTTTTCCCCCTCTATTTTATTATGTTTTTCAATACTATCCTCAGCCAAAAGCAACAATAACAATTACGCCTCAATCCGAAACAGGTATTTTCAACCAAGATACACGATTTAAACTTGTTTATGACATGCTGTCCAACTGTGAAATGCTTCATAGAGAGCGGTGGCGGAAAACATGTACATGTGATATAATTTGTTGAGGTTACACTCCCATCACAGTGCTACTGTAATCCATATATATTGTTGGCGGCTATCCCGTGAAGTTTAGAACTTCTTGCTCTTCAGGTTTCTTTTTTCACTTTCTTACCTTTCTCATGTCATGGACAACGTAGTTCAAATGTCGAAATTTTGTTGATTTTGATTATTGAGTTTTTTTGTTCTACTATTATCTAGTCAGTGACAAGACAGTAAAAATTAGAGCTTTTCAAGTTGTGAAAATGTTGTTTTTTCTTAACAAAGTGATGTACTTTTGTTTGACTGCTTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233505" ref_strand="+" ref_description="SGN-E233505 [cLED-9-M15]">
      <seq>caaattataagaggctgaaatgaatatattatcgctgtcagcctattattgcagtgagttttttccttctttgatgattccgattatctcccactaatccatttccccgattcaaccaatcccaaaccttacgggaaatagttgtgtcttgattgattcatgactaactcttttaggaagaagtatgaagtcttttttccccctctattttattatgtttttcaatactatcctcagccaaaagcaacaataacaattacgcctcaatccgaaacaggtattttcaaccaagatacacgatttaaacttgtttatgacatgctgtccaactgtgaaatgcttcatagagagcggtggcggaaaacatgtacatgtgatataatttgttgaggttacactcccatcacagtgctactgtaatccatatatattgttggcggctatcccgtgaagtttagaacttcttgctcttcaggtttcttttttcactttcttacctttctcatgtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="120905" stop="122015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121205" g_stop="121715" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E233505" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121205" e_stop="121715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTATAAGAGGCTGAAATGAATATATTATCGCTGTCAGCCTATTATTGCAGTGAGTTTTTTCCTTCTTTGATGATTCCGATTATCTCCCACTAATCCATTTCCCCGATTCAACCAATCCCAAACCTTACGGGAAATAGTTGTGTCTTGATTGATTCATGACTAACTCTTTTAGGAAGAAGTATGAAGTCTTTTTTCCCCCTCTATTTTATTATGTTTTTCAATACTATCCTCAGCCAAAAGCAACAATAACAATTACGCCTCAATCCGAAACAGGTATTTTCAACCAAGATACACGATTTAAACTTGTTTATGACATGCTGTCCAACTGTGAAATGCTTCATAGAGAGCGGTGGCGGAAAACATGTACATGTGATATAATTTGTTGAGGTTACACTCCCATCACAGTGCTACTGTAATCCATATATATTGTTGGCGGCTATCCCGTGAAGTTTAGAACTTCTTGCTCTTCAGGTTTCTTTTTTCACTTTCTTACCTTTCTCATGTCAT</genome_strand>
        <mrna_strand>CAAATTATAAGAGGCTGAAATGAATATATTATCGCTGTCAGCCTATTATTGCAGTGAGTTTTTTCCTTCTTTGATGATTCCGATTATCTCCCACTAATCCATTTCCCCGATTCAACCAATCCCAAACCTTACGGGAAATAGTTGTGTCTTGATTGATTCATGACTAACTCTTTTAGGAAGAAGTATGAAGTCTTTTTTCCCCCTCTATTTTATTATGTTTTTCAATACTATCCTCAGCCAAAAGCAACAATAACAATTACGCCTCAATCCGAAACAGGTATTTTCAACCAAGATACACGATTTAAACTTGTTTATGACATGCTGTCCAACTGTGAAATGCTTCATAGAGAGCGGTGGCGGAAAACATGTACATGTGATATAATTTGTTGAGGTTACACTCCCATCACAGTGCTACTGTAATCCATATATATTGTTGGCGGCTATCCCGTGAAGTTTAGAACTTCTTGCTCTTCAGGTTTCTTTTTTCACTTTCTTACCTTTCTCATGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231306" ref_strand="+" ref_description="SGN-E231306 [cLED-10-C18]">
      <seq>caaattataagaggctgaaatgagtatattatcgctgccagcctattattgcagtgagttttttccttctttgatgattccgattatctcccactaatccatttccccgattcaaccaatcccaaaccttacgggaaatagttgcgtcttgattgattcatgactaactcttttaggaagaagtatgaagtcttttttccccctctattttattatgtttttcaatactatcctcagccaaaagcaacaataacaattacgcctcaatccgaaacaggtcttttcaaccaagatacacgatttaaacttgtttatgacatgctgtccaactgtgaaatgcttcatagagagcggtggcggaaaacatgtacatgtgatataatttgtcgaggttacactcccatcacagtgctactgtaatccatatatattgttggcggctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="120905" stop="121948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121205" g_stop="121648" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E231306" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121205" e_stop="121648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTATAAGAGGCTGAAATGAATATATTATCGCTGTCAGCCTATTATTGCAGTGAGTTTTTTCCTTCTTTGATGATTCCGATTATCTCCCACTAATCCATTTCCCCGATTCAACCAATCCCAAACCTTACGGGAAATAGTTGTGTCTTGATTGATTCATGACTAACTCTTTTAGGAAGAAGTATGAAGTCTTTTTTCCCCCTCTATTTTATTATGTTTTTCAATACTATCCTCAGCCAAAAGCAACAATAACAATTACGCCTCAATCCGAAACAGGTATTTTCAACCAAGATACACGATTTAAACTTGTTTATGACATGCTGTCCAACTGTGAAATGCTTCATAGAGAGCGGTGGCGGAAAACATGTACATGTGATATAATTTGTTGAGGTTACACTCCCATCACAGTGCTACTGTAATCCATATATATTGTTGGCGGCTAT</genome_strand>
        <mrna_strand>CAAATTATAAGAGGCTGAAATGAGTATATTATCGCTGCCAGCCTATTATTGCAGTGAGTTTTTTCCTTCTTTGATGATTCCGATTATCTCCCACTAATCCATTTCCCCGATTCAACCAATCCCAAACCTTACGGGAAATAGTTGCGTCTTGATTGATTCATGACTAACTCTTTTAGGAAGAAGTATGAAGTCTTTTTTCCCCCTCTATTTTATTATGTTTTTCAATACTATCCTCAGCCAAAAGCAACAATAACAATTACGCCTCAATCCGAAACAGGTCTTTTCAACCAAGATACACGATTTAAACTTGTTTATGACATGCTGTCCAACTGTGAAATGCTTCATAGAGAGCGGTGGCGGAAAACATGTACATGTGATATAATTTGTCGAGGTTACACTCCCATCACAGTGCTACTGTAATCCATATATATTGTTGGCGGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232951" ref_strand="+" ref_description="SGN-E232951 [cLED-6-M19]">
      <seq>caaattataagaggctgaaatgaatatattatcgctgtcagcctattattgcagtgagttttttccttctttgatgattccgattatctcccactaatccatttccccgattcaaccaatcccaaaccttacgggaaatagttgtgtcttgattgattcatgactaactcttttaggaagaagtatgaagtcttttttccccctctattttattatgtttttcaatactatcctcagccaaaagcaacaataacaattacgcctcaatccgaaacaggtattttcaaccaagatacacgatttaaacttgtttatgacatgctgtccaactgtgaaatgcttcatagagagcggtggcggaaaacatgtacatgtgatataatttgttgaggttacactcccatcacagtgctactgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="120905" stop="121923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121205" g_stop="121623" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E232951" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121205" e_stop="121623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTATAAGAGGCTGAAATGAATATATTATCGCTGTCAGCCTATTATTGCAGTGAGTTTTTTCCTTCTTTGATGATTCCGATTATCTCCCACTAATCCATTTCCCCGATTCAACCAATCCCAAACCTTACGGGAAATAGTTGTGTCTTGATTGATTCATGACTAACTCTTTTAGGAAGAAGTATGAAGTCTTTTTTCCCCCTCTATTTTATTATGTTTTTCAATACTATCCTCAGCCAAAAGCAACAATAACAATTACGCCTCAATCCGAAACAGGTATTTTCAACCAAGATACACGATTTAAACTTGTTTATGACATGCTGTCCAACTGTGAAATGCTTCATAGAGAGCGGTGGCGGAAAACATGTACATGTGATATAATTTGTTGAGGTTACACTCCCATCACAGTGCTACTGTA</genome_strand>
        <mrna_strand>CAAATTATAAGAGGCTGAAATGAATATATTATCGCTGTCAGCCTATTATTGCAGTGAGTTTTTTCCTTCTTTGATGATTCCGATTATCTCCCACTAATCCATTTCCCCGATTCAACCAATCCCAAACCTTACGGGAAATAGTTGTGTCTTGATTGATTCATGACTAACTCTTTTAGGAAGAAGTATGAAGTCTTTTTTCCCCCTCTATTTTATTATGTTTTTCAATACTATCCTCAGCCAAAAGCAACAATAACAATTACGCCTCAATCCGAAACAGGTATTTTCAACCAAGATACACGATTTAAACTTGTTTATGACATGCTGTCCAACTGTGAAATGCTTCATAGAGAGCGGTGGCGGAAAACATGTACATGTGATATAATTTGTTGAGGTTACACTCCCATCACAGTGCTACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373512" ref_strand="+" ref_description="SGN-E373512 [TUS-31-H8](-)">
      <seq>ataataaaatagagggggaaaacagccttcatacctcttcctaaaagagttagtcatgaatcaatcaagacacaattatttcccgtaaggtttgggattggttgaatcggggaaatggattagtgggagataatgggaatcatcaaagaaggaaagaactcactgcaataataggctgacagcgataatatattcatttcagcctcttataatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="-" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="121720" stop="120905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121420" g_stop="121205" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="-" ref_id="SGN-E373512" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>216</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121420" e_stop="121205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATAAAATAGAGGGGGAAAAAAGACTTCATACTTCTTCCTAAAAGAGTTAGTCATGAATCAATCAAGACACAACTATTTCCCGTAAGGTTTGGGATTGGTTGAATCGGGGAAATGGATTAGTGGGAGATAATCGGAATCATCAAAGAAGGAAAAAACTCACTGCAATAATAGGCTGACAGCGATAATATATTCATTTCAGCCTCTTATAATTTG</genome_strand>
        <mrna_strand>ATAATAAAATAGAGGGGGAAAACAGCCTTCATACCTCTTCCTAAAAGAGTTAGTCATGAATCAATCAAGACACAATTATTTCCCGTAAGGTTTGGGATTGGTTGAATCGGGGAAATGGATTAGTGGGAGATAATGGGAATCATCAAAGAAGGAAAGAACTCACTGCAATAATAGGCTGACAGCGATAATATATTCATTTCAGCCTCTTATAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240120" ref_strand="+" ref_description="SGN-E240120 [cLED-32-M24]">
      <seq>gagaggctgaaatgaatatattatcgctgtcagcctattattgcagcgagttttttccttctttgatgattccgattatctcccactaatccatttccccgattcaaccaatcccaaaccttacgggaaatagttgtgtcttgattgattcatgactaactcttttaggaagaagtatgaagtcttttttccccctctattttattatgtttttcaatactatcctcagccaaaagcaacaataacaattacgcctcaatccgaaacaggtattttcaaccaagatacacgatttaaacttgtttatgacatgctgtccaactgtgaaatgcttcatagagagcggtggcggaaaacatgtacatgtgatataatttgttgaggttacactcccatcacagtgctactgtaatccatatatattgttggcggctatcccgtgaagtttagaacttcttgctcttcaggtttcttttttcactttcttacctttctcatgtcatggacaacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="120914" stop="122024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121213" g_stop="121724" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E240120" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121213" e_stop="121724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGCTGAAATGAATATATTATCGCTGTCAGCCTATTATTGCAGTGAGTTTTTTCCTTCTTTGATGATTCCGATTATCTCCCACTAATCCATTTCCCCGATTCAACCAATCCCAAACCTTACGGGAAATAGTTGTGTCTTGATTGATTCATGACTAACTCTTTTAGGAAGAAGTATGAAGTCTTTTTTCCCCCTCTATTTTATTATGTTTTTCAATACTATCCTCAGCCAAAAGCAACAATAACAATTACGCCTCAATCCGAAACAGGTATTTTCAACCAAGATACACGATTTAAACTTGTTTATGACATGCTGTCCAACTGTGAAATGCTTCATAGAGAGCGGTGGCGGAAAACATGTACATGTGATATAATTTGTTGAGGTTACACTCCCATCACAGTGCTACTGTAATCCATATATATTGTTGGCGGCTATCCCGTGAAGTTTAGAACTTCTTGCTCTTCAGGTTTCTTTTTTCACTTTCTTACCTTTCTCATGTCATGGACAACGT</genome_strand>
        <mrna_strand>GAGAGGCTGAAATGAATATATTATCGCTGTCAGCCTATTATTGCAGCGAGTTTTTTCCTTCTTTGATGATTCCGATTATCTCCCACTAATCCATTTCCCCGATTCAACCAATCCCAAACCTTACGGGAAATAGTTGTGTCTTGATTGATTCATGACTAACTCTTTTAGGAAGAAGTATGAAGTCTTTTTTCCCCCTCTATTTTATTATGTTTTTCAATACTATCCTCAGCCAAAAGCAACAATAACAATTACGCCTCAATCCGAAACAGGTATTTTCAACCAAGATACACGATTTAAACTTGTTTATGACATGCTGTCCAACTGTGAAATGCTTCATAGAGAGCGGTGGCGGAAAACATGTACATGTGATATAATTTGTTGAGGTTACACTCCCATCACAGTGCTACTGTAATCCATATATATTGTTGGCGGCTATCCCGTGAAGTTTAGAACTTCTTGCTCTTCAGGTTTCTTTTTTCACTTTCTTACCTTTCTCATGTCATGGACAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377848" ref_strand="+" ref_description="SGN-E377848 [TUS-21-L11](-)">
      <seq>caggtttcttttttcactttcttacctttctcatgtcatggacaacgtagttcaaatgtcgaaattttgttgattttgattattgagtttttttgttctactattatctagtcagtgacaagacagtaaaaattagagcttttcaagttgtgaaaatgttgttttttcttaacaaagtgatgtacttttgtttgactgcttatgctgagttatcgcgtcacgcttctctttgatcatttagcagttatctccatttcttttctccgatttaggtgcccctgcttggaggagcactctgtgcctgcacttggcatttcttttataactcggagtctcttgaggtagtagtggctctacaagcagctttgacagtaattggtaatgccacaatgtgctttgcagcattccggatatacagatcaacacagaaccagtcaaaagaactgtgatcatcgtctttgagtcatttcaccctactagattctccgtctaactcgtacataacgtaacgatcgttgctccatgctaagaaatggaagagtttttatagccagtgtagaccggagctctaagctaggtcaagaaagcggattcagaattttgaatttgtattgtttaacttttaaggttcttagactaaaactcactgtacatttttgaattcgtgtactcgagattcaaaatttataaatattgatggttaaaccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="121377" stop="122911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121677" g_stop="122016" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122017" i_stop="122321" i_length="305">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122322" g_stop="122689" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="709" r_length="368" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="710" polyA_stop="722"/>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E377848" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121677" e_stop="122016"/>
          <exon e_start="122322" e_stop="122689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTTTCTTTTTTCACTTTCTTACCTTTCTCATGTCATGGACAACGTAGTTCAAATGTCGAAATTTTGTTGATTTTGATTATTGAG-TTTTTTGTTCTACTATTATCTAGTCAGTGACAAGACAGTAAAAATTAGAGCTTTTCAAGTTGTGAAAATGTTGTTTTTTCTTAACAAAGTGATGTACTTTTGTTTGACTGCTTATGCTGAGTTATCGCGTCACGCTTCTCTTTGATCATTTAGCAGTTATCTCCATTTCTTTTCTCCGATTTAGGTGCCCCTGCTTGGAGGAGCACTCTGTGCCTGCACTTGGCATTTCTTTTATAACTCGGAGTCTCTTGAGGTAAGTAGATGCAATTCTTTATCTAGAACGAAATTTATGAACTTCTCTTGGTAAAATATGATTGCGGATTCGCCCTAAACCATTCCCCTATGGGCAGCGGTTGATCTACTATGTTGGTTACAGGTTCAACTGAACTCAGTAGATCCTTATATTTAGAAATCTACTAAATCTATAAAGATATTTGACTGTGGACTCATTAGTATCGACTTGATATCACTGCAGGAGCTCGTAAACTTCAAATCCTGTAATCCACCTCTAATCGCGGAGATATGACTTAACGTTCCGTTTCCATGCATGATTTTCAGGTAGTAGTGGCTCTACAAGCAGCTTTGACAGTAATTGGTAATGCCACAATGTGCTTTGCAGCATTCCGGATATACAGATCAACACAGAACCAGTCAAAAGAACTGTGATCATCGTCTTTGAGTCATTTCACCCTACTAGATTCTCCGTCTAACTCGTACATAACGTAACGATCGTTGCTCCATGCTAAGAAATGGAAGAGTTTTTATAGCCAGTGTAGACCGGAGCTCTAAGCTAGGTCAAGAAAGCGGATTCAGAATTTTGAATTTGTATTGTTTAACTTTTAAGGTTCTTAGACTAAAACTCACTGTACATTTTTGAATTCGTGTACTCGAGATTCAAAATTTATAAATATTGATGGTTAAACCAA</genome_strand>
        <mrna_strand>CAGGTTTCTTTTTTCACTTTCTTACCTTTCTCATGTCATGGACAACGTAGTTCAAATGTCGAAATTTTGTTGATTTTGATTATTGAGTTTTTTTGTTCTACTATTATCTAGTCAGTGACAAGACAGTAAAAATTAGAGCTTTTCAAGTTGTGAAAATGTTGTTTTTTCTTAACAAAGTGATGTACTTTTGTTTGACTGCTTATGCTGAGTTATCGCGTCACGCTTCTCTTTGATCATTTAGCAGTTATCTCCATTTCTTTTCTCCGATTTAGGTGCCCCTGCTTGGAGGAGCACTCTGTGCCTGCACTTGGCATTTCTTTTATAACTCGGAGTCTCTTGAG.................................................................................................................................................................................................................................................................................................................GTAGTAGTGGCTCTACAAGCAGCTTTGACAGTAATTGGTAATGCCACAATGTGCTTTGCAGCATTCCGGATATACAGATCAACACAGAACCAGTCAAAAGAACTGTGATCATCGTCTTTGAGTCATTTCACCCTACTAGATTCTCCGTCTAACTCGTACATAACGTAACGATCGTTGCTCCATGCTAAGAAATGGAAGAGTTTTTATAGCCAGTGTAGACCGGAGCTCTAAGCTAGGTCAAGAAAGCGGATTCAGAATTTTGAATTTGTATTGTTTAACTTTTAAGGTTCTTAGACTAAAACTCACTGTACATTTTTGAATTCGTGTACTCGAGATTCAAAATTTATAAATATTGATGGTTAAACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377476" ref_strand="+" ref_description="SGN-E377476 [TUS-20-H7](-)">
      <seq>tttttcactttcttacctttctcatgtcatggacaacgtagttcaaatgtcgaaattttgttgattttgattattgagtttttttgttctactattatctagtcagtgacaagacagtaaaaattagagcttttcaagttgtgaaaatgttgttttttcttaacaaagtgatgtacttttgtttgactgcttatgctgagttatcgcgtcacgcttctctttgatcatttagcagttatctccatttcttttctccgatttaggtgcccctgcttggaggagcactctgtgcctgcacttggcatttcttttataactcggagtctcttgaggtagtagtggctctacaagcagctttgacagtaattggtaatgccacaatgtgctttgcagcattccggatatacagatcaacacagaaccagtcaaaagaactgtgatcatcgtctttgagtcatttcaccctactagattctccgtctaactcgtacataacgtaacgatcgttgctccatgctaagaaatggaagagtttttatagccagtgtagaccggagctctaagctaggtcaagaaagcggattcagaattttgaatttgtattgtttaacttttaaggttcttagactaaaactcactgtacatttttgaattcgtgtactcgagattcaaaatttataaatattgatggttaaaccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="121386" stop="122911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121686" g_stop="122016" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122017" i_stop="122321" i_length="305">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122322" g_stop="122689" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="700" r_length="368" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="701" polyA_stop="713"/>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E377476" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121686" e_stop="122016"/>
          <exon e_start="122322" e_stop="122689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCACTTTCTTACCTTTCTCATGTCATGGACAACGTAGTTCAAATGTCGAAATTTTGTTGATTTTGATTATTGAG-TTTTTTGTTCTACTATTATCTAGTCAGTGACAAGACAGTAAAAATTAGAGCTTTTCAAGTTGTGAAAATGTTGTTTTTTCTTAACAAAGTGATGTACTTTTGTTTGACTGCTTATGCTGAGTTATCGCGTCACGCTTCTCTTTGATCATTTAGCAGTTATCTCCATTTCTTTTCTCCGATTTAGGTGCCCCTGCTTGGAGGAGCACTCTGTGCCTGCACTTGGCATTTCTTTTATAACTCGGAGTCTCTTGAGGTAAGTAGATGCAATTCTTTATCTAGAACGAAATTTATGAACTTCTCTTGGTAAAATATGATTGCGGATTCGCCCTAAACCATTCCCCTATGGGCAGCGGTTGATCTACTATGTTGGTTACAGGTTCAACTGAACTCAGTAGATCCTTATATTTAGAAATCTACTAAATCTATAAAGATATTTGACTGTGGACTCATTAGTATCGACTTGATATCACTGCAGGAGCTCGTAAACTTCAAATCCTGTAATCCACCTCTAATCGCGGAGATATGACTTAACGTTCCGTTTCCATGCATGATTTTCAGGTAGTAGTGGCTCTACAAGCAGCTTTGACAGTAATTGGTAATGCCACAATGTGCTTTGCAGCATTCCGGATATACAGATCAACACAGAACCAGTCAAAAGAACTGTGATCATCGTCTTTGAGTCATTTCACCCTACTAGATTCTCCGTCTAACTCGTACATAACGTAACGATCGTTGCTCCATGCTAAGAAATGGAAGAGTTTTTATAGCCAGTGTAGACCGGAGCTCTAAGCTAGGTCAAGAAAGCGGATTCAGAATTTTGAATTTGTATTGTTTAACTTTTAAGGTTCTTAGACTAAAACTCACTGTACATTTTTGAATTCGTGTACTCGAGATTCAAAATTTATAAATATTGATGGTTAAACCAA</genome_strand>
        <mrna_strand>TTTTTCACTTTCTTACCTTTCTCATGTCATGGACAACGTAGTTCAAATGTCGAAATTTTGTTGATTTTGATTATTGAGTTTTTTTGTTCTACTATTATCTAGTCAGTGACAAGACAGTAAAAATTAGAGCTTTTCAAGTTGTGAAAATGTTGTTTTTTCTTAACAAAGTGATGTACTTTTGTTTGACTGCTTATGCTGAGTTATCGCGTCACGCTTCTCTTTGATCATTTAGCAGTTATCTCCATTTCTTTTCTCCGATTTAGGTGCCCCTGCTTGGAGGAGCACTCTGTGCCTGCACTTGGCATTTCTTTTATAACTCGGAGTCTCTTGAG.................................................................................................................................................................................................................................................................................................................GTAGTAGTGGCTCTACAAGCAGCTTTGACAGTAATTGGTAATGCCACAATGTGCTTTGCAGCATTCCGGATATACAGATCAACACAGAACCAGTCAAAAGAACTGTGATCATCGTCTTTGAGTCATTTCACCCTACTAGATTCTCCGTCTAACTCGTACATAACGTAACGATCGTTGCTCCATGCTAAGAAATGGAAGAGTTTTTATAGCCAGTGTAGACCGGAGCTCTAAGCTAGGTCAAGAAAGCGGATTCAGAATTTTGAATTTGTATTGTTTAACTTTTAAGGTTCTTAGACTAAAACTCACTGTACATTTTTGAATTCGTGTACTCGAGATTCAAAATTTATAAATATTGATGGTTAAACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377773" ref_strand="+" ref_description="SGN-E377773 [TUS-21-J7](-)">
      <seq>catgtcatggacaacgtagttcaaatgtcgaaattttgttgattttgattattgagtttttttgttctactattatctagtcagtgacaagacagtaaaaattagagcttttcaagttgtgaaaatgttgttttttcttaacaaagtgatgtacttttgtttgactgcttatgctgagttatcgcgtcacgcttctctttgatcatttagcagttatctccatttcttttctccgatttaggtgcccctgcttggaggagcactctgtgcctgcacttggcatttcttttataactcggagtctcttgaggtagtagtggctctacaagcagctttgacagtaattggtaatgccacaatgtgctttgcagcattccggatatacagatcaacacagaaccagtcaaaagaactgtgatcatcgtctttgagtcatttcaccctactagattctccgtctaactcgtacataacgtaacgatcgttgctccatgctaagaaatggaagagtttttatagccagtgtagaccggagctctaagctaggtcaagaaagcggattcagaattttgaatttgtattgtttaacttttaaggttcttagactaaaactcactgtacatttttgaattcgtgtactcgagattcaaaatttataaatattgatggttaaaccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="121408" stop="122911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121708" g_stop="122016" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122017" i_stop="122321" i_length="305">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122322" g_stop="122689" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="678" r_length="368" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="679" polyA_stop="691"/>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-E377773" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121708" e_stop="122016"/>
          <exon e_start="122322" e_stop="122689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTCATGGACAACGTAGTTCAAATGTCGAAATTTTGTTGATTTTGATTATTGAG-TTTTTTGTTCTACTATTATCTAGTCAGTGACAAGACAGTAAAAATTAGAGCTTTTCAAGTTGTGAAAATGTTGTTTTTTCTTAACAAAGTGATGTACTTTTGTTTGACTGCTTATGCTGAGTTATCGCGTCACGCTTCTCTTTGATCATTTAGCAGTTATCTCCATTTCTTTTCTCCGATTTAGGTGCCCCTGCTTGGAGGAGCACTCTGTGCCTGCACTTGGCATTTCTTTTATAACTCGGAGTCTCTTGAGGTAAGTAGATGCAATTCTTTATCTAGAACGAAATTTATGAACTTCTCTTGGTAAAATATGATTGCGGATTCGCCCTAAACCATTCCCCTATGGGCAGCGGTTGATCTACTATGTTGGTTACAGGTTCAACTGAACTCAGTAGATCCTTATATTTAGAAATCTACTAAATCTATAAAGATATTTGACTGTGGACTCATTAGTATCGACTTGATATCACTGCAGGAGCTCGTAAACTTCAAATCCTGTAATCCACCTCTAATCGCGGAGATATGACTTAACGTTCCGTTTCCATGCATGATTTTCAGGTAGTAGTGGCTCTACAAGCAGCTTTGACAGTAATTGGTAATGCCACAATGTGCTTTGCAGCATTCCGGATATACAGATCAACACAGAACCAGTCAAAAGAACTGTGATCATCGTCTTTGAGTCATTTCACCCTACTAGATTCTCCGTCTAACTCGTACATAACGTAACGATCGTTGCTCCATGCTAAGAAATGGAAGAGTTTTTATAGCCAGTGTAGACCGGAGCTCTAAGCTAGGTCAAGAAAGCGGATTCAGAATTTTGAATTTGTATTGTTTAACTTTTAAGGTTCTTAGACTAAAACTCACTGTACATTTTTGAATTCGTGTACTCGAGATTCAAAATTTATAAATATTGATGGTTAAACCAA</genome_strand>
        <mrna_strand>CATGTCATGGACAACGTAGTTCAAATGTCGAAATTTTGTTGATTTTGATTATTGAGTTTTTTTGTTCTACTATTATCTAGTCAGTGACAAGACAGTAAAAATTAGAGCTTTTCAAGTTGTGAAAATGTTGTTTTTTCTTAACAAAGTGATGTACTTTTGTTTGACTGCTTATGCTGAGTTATCGCGTCACGCTTCTCTTTGATCATTTAGCAGTTATCTCCATTTCTTTTCTCCGATTTAGGTGCCCCTGCTTGGAGGAGCACTCTGTGCCTGCACTTGGCATTTCTTTTATAACTCGGAGTCTCTTGAG.................................................................................................................................................................................................................................................................................................................GTAGTAGTGGCTCTACAAGCAGCTTTGACAGTAATTGGTAATGCCACAATGTGCTTTGCAGCATTCCGGATATACAGATCAACACAGAACCAGTCAAAAGAACTGTGATCATCGTCTTTGAGTCATTTCACCCTACTAGATTCTCCGTCTAACTCGTACATAACGTAACGATCGTTGCTCCATGCTAAGAAATGGAAGAGTTTTTATAGCCAGTGTAGACCGGAGCTCTAAGCTAGGTCAAGAAAGCGGATTCAGAATTTTGAATTTGTATTGTTTAACTTTTAAGGTTCTTAGACTAAAACTCACTGTACATTTTTGAATTCGTGTACTCGAGATTCAAAATTTATAAATATTGATGGTTAAACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>84</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="9909" PGL_stop="18357"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9909" e_stop="10018"/>
            <exon e_start="13100" e_stop="13329"/>
            <exon e_start="13444" e_stop="13695"/>
            <exon e_start="13797" e_stop="13873"/>
            <exon e_start="14021" e_stop="14399"/>
            <exon e_start="15818" e_stop="15874"/>
            <exon e_start="16748" e_stop="16809"/>
            <exon e_start="16891" e_stop="17250"/>
            <exon e_start="18315" e_stop="18357"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.553" acc_prob="0.921" e_score="0.909"/>
          <exon-intron don_prob="0.999" acc_prob="0.635" e_score="0.961"/>
          <exon-intron don_prob="0.993" acc_prob="0.988" e_score="0.972"/>
          <exon-intron don_prob="0.569" acc_prob="0.969" e_score="0.961"/>
          <exon-intron don_prob="0.976" acc_prob="0.999" e_score="0.955"/>
          <exon-intron don_prob="1.000" acc_prob="0.911" e_score="0.982"/>
          <exon-intron don_prob="0.941" acc_prob="0.803" e_score="0.968"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.928"/>
          <exon-only e_score="0.581"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="9909" e_stop="10018" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.553" acc_prob="0.921">
            <gDNA_intron_boundary i_start="10019" i_stop="13099" i_length="3081"/>
          </intron>
          <exon e_serial="2" e_score="0.961">
            <gDNA_exon_boundary e_start="13100" e_stop="13329" e_length="230"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.635">
            <gDNA_intron_boundary i_start="13330" i_stop="13443" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="0.972">
            <gDNA_exon_boundary e_start="13444" e_stop="13695" e_length="252"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.988">
            <gDNA_intron_boundary i_start="13696" i_stop="13796" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="0.961">
            <gDNA_exon_boundary e_start="13797" e_stop="13873" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.569" acc_prob="0.969">
            <gDNA_intron_boundary i_start="13874" i_stop="14020" i_length="147"/>
          </intron>
          <exon e_serial="5" e_score="0.955">
            <gDNA_exon_boundary e_start="14021" e_stop="14399" e_length="379"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14400" i_stop="15817" i_length="1418"/>
          </intron>
          <exon e_serial="6" e_score="0.982">
            <gDNA_exon_boundary e_start="15818" e_stop="15874" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.911">
            <gDNA_intron_boundary i_start="15875" i_stop="16747" i_length="873"/>
          </intron>
          <exon e_serial="7" e_score="0.968">
            <gDNA_exon_boundary e_start="16748" e_stop="16809" e_length="62"/>
          </exon>
          <intron i_serial="7" don_prob="0.941" acc_prob="0.803">
            <gDNA_intron_boundary i_start="16810" i_stop="16890" i_length="81"/>
          </intron>
          <exon e_serial="8" e_score="0.928">
            <gDNA_exon_boundary e_start="16891" e_stop="17250" e_length="360"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17251" i_stop="18314" i_length="1064"/>
          </intron>
          <exon e_serial="9" e_score="0.581">
            <gDNA_exon_boundary e_start="18315" e_stop="18357" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9909" stop="10018"/>
              <exon start="13100" stop="13329"/>
              <exon start="13444" stop="13695"/>
              <exon start="13797" stop="13873"/>
              <exon start="14021" stop="14167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9909" stop="10018"/>
              <exon start="13100" stop="13329"/>
              <exon start="13444" stop="13695"/>
              <exon start="13797" stop="13873"/>
              <exon start="14021" stop="14117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9909" stop="10018"/>
              <exon start="13100" stop="13329"/>
              <exon start="13444" stop="13695"/>
              <exon start="13797" stop="13873"/>
              <exon start="14021" stop="14048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9909" stop="10018"/>
              <exon start="13100" stop="13329"/>
              <exon start="13444" stop="13624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9909" stop="10018"/>
              <exon start="13100" stop="13329"/>
              <exon start="13444" stop="13518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13178" stop="13329"/>
              <exon start="13444" stop="13695"/>
              <exon start="13797" stop="13873"/>
              <exon start="14021" stop="14168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13842" stop="13873"/>
              <exon start="14021" stop="14399"/>
              <exon start="15818" stop="15874"/>
              <exon start="16748" stop="16809"/>
              <exon start="16891" stop="17250"/>
              <exon start="18315" stop="18357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14321" stop="14399"/>
              <exon start="15818" stop="15874"/>
              <exon start="16748" stop="16809"/>
              <exon start="16891" stop="17222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413810" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16808" stop="16809"/>
              <exon start="16891" stop="17115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596271" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGGAGGTTGTAAGCAGATATGCCATCAGATACTGCAAGAAAAAATGCAGCTATAGCTAATTCCATAGTGACCGACTACAAAAATGAAAGAAGGAATTTTGACGGACCAG : ATAGTTCATGCCTCAGAGTAAATGAGGATACCAATCGTTCTATAGCAGAGGAGCTCACACTTTCATCTCCGCCGATTGGAATTTCAACTGCAATTGAAAAGGGTAAACTCTATAGCATAAGATATTTTGTAATCAAGAGTTTGAACCATGAAAATATCCAATTATCAGTAAACAGAGGGATTTGGGCTACTCAAGCCATGAATGAGGCCATTTTGGATGAAGCATTTCAT : AATTCCAGCAAGGTTATACTAATATTCAGTGTCAACACTAGTGGGTATTTCCAAGGGTATGCCCAAATGATTTCTTCTGTCGGTTTGAGAAGAGACCAAGTTTGGAGTCAAGGAAATGGTGGTCGTAATTCTTGGGGTCGAAGCTTTGAAGTGAATTGGCTGCGATTGTATGATCTGCCTTTTCAAAGAACTCTTCACCTTAAGAATCCATGGAATCAAAACAAACCAGTCAAAATTAGTAGAGATTGTCAG : GAGTTACCTCCAGATATTGGTGAAGCTTTATGTGAGCTCCTTGATGGACAGGATGCTTTGGATGTTAATTTGAAAAT : GGATGTCTTTGCAAGGAATGAGCTCTCTTCTAAAAGGCCATATGTAGAGCCTTCACTGCATCTTGGAGATCAAGACTATAATGCATCTCTGATACCTAATGGGACCATGTTTTCACCCTCTTTACTCTACCAACATCAAATTGATGCTAGTAGACTTCACGTAGCACCTCTGAGAATTAATGGTGTATTTTCTGCTGAGGAGTCAGCCATTGCATCAGGGGAATCAAAGTCGGGACAGTCGAGGCATTCACAGAGGAATAGAAGCTTTGCTAATCTCCATGTAGACACTGACATGGGTCCTCAAATTAACATGTGGGGCTTGCCGGCAGAAAGAAGCCCACTGGCTAGTAATTTGACTGAAGATGACATTCTTGAAATG : ACATATGAAGAGTATCTTGAAGCTTGTAGCAGAGGCAGCAAAAGATCGCCCCACCCT : GTTTCAGGACCATCACGGAGTACACAGAGGTCATTAGCCAGTCAAGAAAACTGTGAAGATTC : GCAATCAGGTCGCAGTTCAAAGAAAAGGAGAGGTCACTAAATCTCCCCATTGGTTGAATTGGTTTTCTTGGCGAGCAGGCTGATATGGTTGATAATTGTATTGTTGCAGTTGTCGCGAAGTGGTGGTTCTTGCGAAATTGTTTCTTTATTTTTGTAAAACTTAAAACTTAAAACTTAGGAGCATATATTGCTATAATGTTGGAGTATATCTGTACTGTATTATATGACCCTCTTGTCACCCTTCTCTCCTTCCTGTTTTCGAATGGAAACTTTTATACTGTTAATGGGAACTTGTACTGGAAATTAGCAAGTCTCTCTATACTCATATATTCATTCTTGATTCAGTCAAGTACTGTATAG : AAATTTATGATATGTTGGTAACATATGAAGTAATAGAAGTAAC</gDNA_template>
            <first_frame> Q  E  V  V  S  R  Y  A  I  R  Y  C  K  K  K  C  S  Y  S  *  F  H  S  D  R  L  Q  K  *  K  K  E  F  *  R  T  R :   *  F  M  P  Q  S  K  *  G  Y  Q  S  F  Y  S  R  G  A  H  T  F  I  S  A  D  W  N  F  N  C  N  *  K  G  *  T  L  *  H  K  I  F  C  N  Q  E  F  E  P  *  K  Y  P  I  I  S  K  Q  R  D  L  G  Y  S  S  H  E  *  G  H  F  G  *  S  I  S   : *  F  Q  Q  G  Y  T  N  I  Q  C  Q  H  *  W  V  F  P  R  V  C  P  N  D  F  F  C  R  F  E  K  R  P  S  L  E  S  R  K  W  W  S  *  F  L  G  S  K  L  *  S  E  L  A  A  I  V  *  S  A  F  S  K  N  S  S  P  *  E  S  M  E  S  K  Q  T  S  Q  N  *  *  R  L  S   : G  V  T  S  R  Y  W  *  S  F  M  *  A  P  *  W  T  G  C  F  G  C  *  F  E  N  :  G  C  L  C  K  E  *  A  L  F  *  K  A  I  C  R  A  F  T  A  S  W  R  S  R  L  *  C  I  S  D  T  *  W  D  H  V  F  T  L  F  T  L  P  T  S  N  *  C  *  *  T  S  R  S  T  S  E  N  *  W  C  I  F  C  *  G  V  S  H  C  I  R  G  I  K  V  G  T  V  E  A  F  T  E  E  *  K  L  C  *  S  P  C  R  H  *  H  G  S  S  N  *  H  V  G  L  A  G  R  K  K  P  T  G  *  *  F  D  *  R  *  H  S  *  N   : D  I  *  R  V  S  *  S  L  *  Q  R  Q  Q  K  I  A  P  P   : C  F  R  T  I  T  E  Y  T  E  V  I  S  Q  S  R  K  L  *  R  F  :  A  I  R  S  Q  F  K  E  K  E  R  S  L  N  L  P  I  G  *  I  G  F  L  G  E  Q  A  D  M  V  D  N  C  I  V  A  V  V  A  K  W  W  F  L  R  N  C  F  F  I  F  V  K  L  K  T  *  N  L  G  A  Y  I  A  I  M  L  E  Y  I  C  T  V  L  Y  D  P  L  V  T  L  L  S  F  L  F  S  N  G  N  F  Y  T  V  N  G  N  L  Y  W  K  L  A  S  L  S  I  L  I  Y  S  F  L  I  Q  S  S  T  V  *  :  K  F  M  I  C  W  *  H  M  K  *  *  K  *  </first_frame>
            <second_frame>  R  R  L  *  A  D  M  P  S  D  T  A  R  K  N  A  A  I  A  N  S  I  V  T  D  Y  K  N  E  R  R  N  F  D  G  P   : D  S  S  C  L  R  V  N  E  D  T  N  R  S  I  A  E  E  L  T  L  S  S  P  P  I  G  I  S  T  A  I  E  K  G  K  L  Y  S  I  R  Y  F  V  I  K  S  L  N  H  E  N  I  Q  L  S  V  N  R  G  I  W  A  T  Q  A  M  N  E  A  I  L  D  E  A  F  H  :  N  S  S  K  V  I  L  I  F  S  V  N  T  S  G  Y  F  Q  G  Y  A  Q  M  I  S  S  V  G  L  R  R  D  Q  V  W  S  Q  G  N  G  G  R  N  S  W  G  R  S  F  E  V  N  W  L  R  L  Y  D  L  P  F  Q  R  T  L  H  L  K  N  P  W  N  Q  N  K  P  V  K  I  S  R  D  C  Q  :  E  L  P  P  D  I  G  E  A  L  C  E  L  L  D  G  Q  D  A  L  D  V  N  L  K  M :   D  V  F  A  R  N  E  L  S  S  K  R  P  Y  V  E  P  S  L  H  L  G  D  Q  D  Y  N  A  S  L  I  P  N  G  T  M  F  S  P  S  L  L  Y  Q  H  Q  I  D  A  S  R  L  H  V  A  P  L  R  I  N  G  V  F  S  A  E  E  S  A  I  A  S  G  E  S  K  S  G  Q  S  R  H  S  Q  R  N  R  S  F  A  N  L  H  V  D  T  D  M  G  P  Q  I  N  M  W  G  L  P  A  E  R  S  P  L  A  S  N  L  T  E  D  D  I  L  E  M  :  T  Y  E  E  Y  L  E  A  C  S  R  G  S  K  R  S  P  H  P  :  V  S  G  P  S  R  S  T  Q  R  S  L  A  S  Q  E  N  C  E  D  S :   Q  S  G  R  S  S  K  K  R  R  G  H  *  I  S  P  L  V  E  L  V  F  L  A  S  R  L  I  W  L  I  I  V  L  L  Q  L  S  R  S  G  G  S  C  E  I  V  S  L  F  L  *  N  L  K  L  K  T  *  E  H  I  L  L  *  C  W  S  I  S  V  L  Y  Y  M  T  L  L  S  P  F  S  P  S  C  F  R  M  E  T  F  I  L  L  M  G  T  C  T  G  N  *  Q  V  S  L  Y  S  Y  I  H  S  *  F  S  Q  V  L  Y  R :   N  L  *  Y  V  G  N  I  *  S  N  R  S  N </second_frame>
            <third_frame>   G  G  C  K  Q  I  C  H  Q  I  L  Q  E  K  M  Q  L  *  L  I  P  *  *  P  T  T  K  M  K  E  G  I  L  T  D  Q  :  I  V  H  A  S  E  *  M  R  I  P  I  V  L  *  Q  R  S  S  H  F  H  L  R  R  L  E  F  Q  L  Q  L  K  R  V  N  S  I  A  *  D  I  L  *  S  R  V  *  T  M  K  I  S  N  Y  Q  *  T  E  G  F  G  L  L  K  P  *  M  R  P  F  W  M  K  H  F  I :   I  P  A  R  L  Y  *  Y  S  V  S  T  L  V  G  I  S  K  G  M  P  K  *  F  L  L  S  V  *  E  E  T  K  F  G  V  K  E  M  V  V  V  I  L  G  V  E  A  L  K  *  I  G  C  D  C  M  I  C  L  F  K  E  L  F  T  L  R  I  H  G  I  K  T  N  Q  S  K  L  V  E  I  V  R :   S  Y  L  Q  I  L  V  K  L  Y  V  S  S  L  M  D  R  M  L  W  M  L  I  *  K   : W  M  S  L  Q  G  M  S  S  L  L  K  G  H  M  *  S  L  H  C  I  L  E  I  K  T  I  M  H  L  *  Y  L  M  G  P  C  F  H  P  L  Y  S  T  N  I  K  L  M  L  V  D  F  T  *  H  L  *  E  L  M  V  Y  F  L  L  R  S  Q  P  L  H  Q  G  N  Q  S  R  D  S  R  G  I  H  R  G  I  E  A  L  L  I  S  M  *  T  L  T  W  V  L  K  L  T  C  G  A  C  R  Q  K  E  A  H  W  L  V  I  *  L  K  M  T  F  L  K  * :   H  M  K  S  I  L  K  L  V  A  E  A  A  K  D  R  P  T  L :   F  Q  D  H  H  G  V  H  R  G  H  *  P  V  K  K  T  V  K  I   : R  N  Q  V  A  V  Q  R  K  G  E  V  T  K  S  P  H  W  L  N  W  F  S  W  R  A  G  *  Y  G  *  *  L  Y  C  C  S  C  R  E  V  V  V  L  A  K  L  F  L  Y  F  C  K  T  *  N  L  K  L  R  S  I  Y  C  Y  N  V  G  V  Y  L  Y  C  I  I  *  P  S  C  H  P  S  L  L  P  V  F  E  W  K  L  L  Y  C  *  W  E  L  V  L  E  I  S  K  S  L  Y  T  H  I  F  I  L  D  S  V  K  Y  C  I   : E  I  Y  D  M  L  V  T  Y  E  V  I  E  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9922" stop="10018"/>
                    <exon start="13100" stop="13329"/>
                    <exon start="13444" stop="13695"/>
                    <exon start="13797" stop="13873"/>
                    <exon start="14021" stop="14399"/>
                    <exon start="15818" stop="15874"/>
                    <exon start="16748" stop="16809"/>
                    <exon start="16891" stop="16930"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1191</number_coding_nucleotides>
                  <number_encoded_amino_acids>397</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ADMPSDTARKNAAIANSIVTDYKNERRNFDGPDSSCLRVNEDTNRSIAEELTLSSPPIGISTAIEKGKLYSIRYFVIKSLNHENIQLSVNRGIWATQAMNEAILDEAFHNSSKVILIFSVNTSGYFQGYAQMISSVGLRRDQVWSQGNGGRNSWGRSFEVNWLRLYDLPFQRTLHLKNPWNQNKPVKISRDCQELPPDIGEALCELLDGQDALDVNLKMDVFARNELSSKRPYVEPSLHLGDQDYNASLIPNGTMFSPSLLYQHQIDASRLHVAPLRINGVFSAEESAIASGESKSGQSRHSQRNRSFANLHVDTDMGPQINMWGLPAERSPLASNLTEDDILEMTYEEYLEACSRGSKRSPHPVSGPSRSTQRSLASQENCEDSQSGRSSKKRRGH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9909" e_stop="10018"/>
            <exon e_start="13100" e_stop="13201"/>
            <exon e_start="13268" e_stop="13329"/>
            <exon e_start="13444" e_stop="13695"/>
            <exon e_start="13797" e_stop="13873"/>
            <exon e_start="14021" e_stop="14399"/>
            <exon e_start="15818" e_stop="15874"/>
            <exon e_start="16748" e_stop="16809"/>
            <exon e_start="16891" e_stop="17250"/>
            <exon e_start="18315" e_stop="18357"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.553" acc_prob="0.921" e_score="0.909"/>
          <exon-intron don_prob="0.918" acc_prob="0.731" e_score="0.902"/>
          <exon-intron don_prob="0.999" acc_prob="0.635" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.988" e_score="0.968"/>
          <exon-intron don_prob="0.569" acc_prob="0.969" e_score="0.961"/>
          <exon-intron don_prob="0.976" acc_prob="0.999" e_score="0.955"/>
          <exon-intron don_prob="1.000" acc_prob="0.911" e_score="0.982"/>
          <exon-intron don_prob="0.941" acc_prob="0.803" e_score="0.968"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.928"/>
          <exon-only e_score="0.581"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="9909" e_stop="10018" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.553" acc_prob="0.921">
            <gDNA_intron_boundary i_start="10019" i_stop="13099" i_length="3081"/>
          </intron>
          <exon e_serial="2" e_score="0.902">
            <gDNA_exon_boundary e_start="13100" e_stop="13201" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.918" acc_prob="0.731">
            <gDNA_intron_boundary i_start="13202" i_stop="13267" i_length="66"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13268" e_stop="13329" e_length="62"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.635">
            <gDNA_intron_boundary i_start="13330" i_stop="13443" i_length="114"/>
          </intron>
          <exon e_serial="4" e_score="0.968">
            <gDNA_exon_boundary e_start="13444" e_stop="13695" e_length="252"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.988">
            <gDNA_intron_boundary i_start="13696" i_stop="13796" i_length="101"/>
          </intron>
          <exon e_serial="5" e_score="0.961">
            <gDNA_exon_boundary e_start="13797" e_stop="13873" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.569" acc_prob="0.969">
            <gDNA_intron_boundary i_start="13874" i_stop="14020" i_length="147"/>
          </intron>
          <exon e_serial="6" e_score="0.955">
            <gDNA_exon_boundary e_start="14021" e_stop="14399" e_length="379"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14400" i_stop="15817" i_length="1418"/>
          </intron>
          <exon e_serial="7" e_score="0.982">
            <gDNA_exon_boundary e_start="15818" e_stop="15874" e_length="57"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.911">
            <gDNA_intron_boundary i_start="15875" i_stop="16747" i_length="873"/>
          </intron>
          <exon e_serial="8" e_score="0.968">
            <gDNA_exon_boundary e_start="16748" e_stop="16809" e_length="62"/>
          </exon>
          <intron i_serial="8" don_prob="0.941" acc_prob="0.803">
            <gDNA_intron_boundary i_start="16810" i_stop="16890" i_length="81"/>
          </intron>
          <exon e_serial="9" e_score="0.928">
            <gDNA_exon_boundary e_start="16891" e_stop="17250" e_length="360"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17251" i_stop="18314" i_length="1064"/>
          </intron>
          <exon e_serial="10" e_score="0.581">
            <gDNA_exon_boundary e_start="18315" e_stop="18357" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9909" stop="10018"/>
              <exon start="13100" stop="13201"/>
              <exon start="13268" stop="13329"/>
              <exon start="13444" stop="13695"/>
              <exon start="13797" stop="13873"/>
              <exon start="14021" stop="14168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13842" stop="13873"/>
              <exon start="14021" stop="14399"/>
              <exon start="15818" stop="15874"/>
              <exon start="16748" stop="16809"/>
              <exon start="16891" stop="17250"/>
              <exon start="18315" stop="18357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14321" stop="14399"/>
              <exon start="15818" stop="15874"/>
              <exon start="16748" stop="16809"/>
              <exon start="16891" stop="17222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413810" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16808" stop="16809"/>
              <exon start="16891" stop="17115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596271" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGGAGGTTGTAAGCAGATATGCCATCAGATACTGCAAGAAAAAATGCAGCTATAGCTAATTCCATAGTGACCGACTACAAAAATGAAAGAAGGAATTTTGACGGACCAG : ATAGTTCATGCCTCAGAGTAAATGAGGATACCAATCGTTCTATAGCAGAGGAGCTCACACTTTCATCTCCGCCGATTGGAATTTCAACTGCAATTGAAAAGG : TAAACAGAGGGATTTGGGCTACTCAAGCCATGAATGAGGCCATTTTGGATGAAGCATTTCAT : AATTCCAGCAAGGTTATACTAATATTCAGTGTCAACACTAGTGGGTATTTCCAAGGGTATGCCCAAATGATTTCTTCTGTCGGTTTGAGAAGAGACCAAGTTTGGAGTCAAGGAAATGGTGGTCGTAATTCTTGGGGTCGAAGCTTTGAAGTGAATTGGCTGCGATTGTATGATCTGCCTTTTCAAAGAACTCTTCACCTTAAGAATCCATGGAATCAAAACAAACCAGTCAAAATTAGTAGAGATTGTCAG : GAGTTACCTCCAGATATTGGTGAAGCTTTATGTGAGCTCCTTGATGGACAGGATGCTTTGGATGTTAATTTGAAAAT : GGATGTCTTTGCAAGGAATGAGCTCTCTTCTAAAAGGCCATATGTAGAGCCTTCACTGCATCTTGGAGATCAAGACTATAATGCATCTCTGATACCTAATGGGACCATGTTTTCACCCTCTTTACTCTACCAACATCAAATTGATGCTAGTAGACTTCACGTAGCACCTCTGAGAATTAATGGTGTATTTTCTGCTGAGGAGTCAGCCATTGCATCAGGGGAATCAAAGTCGGGACAGTCGAGGCATTCACAGAGGAATAGAAGCTTTGCTAATCTCCATGTAGACACTGACATGGGTCCTCAAATTAACATGTGGGGCTTGCCGGCAGAAAGAAGCCCACTGGCTAGTAATTTGACTGAAGATGACATTCTTGAAATG : ACATATGAAGAGTATCTTGAAGCTTGTAGCAGAGGCAGCAAAAGATCGCCCCACCCT : GTTTCAGGACCATCACGGAGTACACAGAGGTCATTAGCCAGTCAAGAAAACTGTGAAGATTC : GCAATCAGGTCGCAGTTCAAAGAAAAGGAGAGGTCACTAAATCTCCCCATTGGTTGAATTGGTTTTCTTGGCGAGCAGGCTGATATGGTTGATAATTGTATTGTTGCAGTTGTCGCGAAGTGGTGGTTCTTGCGAAATTGTTTCTTTATTTTTGTAAAACTTAAAACTTAAAACTTAGGAGCATATATTGCTATAATGTTGGAGTATATCTGTACTGTATTATATGACCCTCTTGTCACCCTTCTCTCCTTCCTGTTTTCGAATGGAAACTTTTATACTGTTAATGGGAACTTGTACTGGAAATTAGCAAGTCTCTCTATACTCATATATTCATTCTTGATTCAGTCAAGTACTGTATAG : AAATTTATGATATGTTGGTAACATATGAAGTAATAGAAGTAAC</gDNA_template>
            <first_frame> Q  E  V  V  S  R  Y  A  I  R  Y  C  K  K  K  C  S  Y  S  *  F  H  S  D  R  L  Q  K  *  K  K  E  F  *  R  T  R :   *  F  M  P  Q  S  K  *  G  Y  Q  S  F  Y  S  R  G  A  H  T  F  I  S  A  D  W  N  F  N  C  N  *  K  G :   K  Q  R  D  L  G  Y  S  S  H  E  *  G  H  F  G  *  S  I  S   : *  F  Q  Q  G  Y  T  N  I  Q  C  Q  H  *  W  V  F  P  R  V  C  P  N  D  F  F  C  R  F  E  K  R  P  S  L  E  S  R  K  W  W  S  *  F  L  G  S  K  L  *  S  E  L  A  A  I  V  *  S  A  F  S  K  N  S  S  P  *  E  S  M  E  S  K  Q  T  S  Q  N  *  *  R  L  S   : G  V  T  S  R  Y  W  *  S  F  M  *  A  P  *  W  T  G  C  F  G  C  *  F  E  N  :  G  C  L  C  K  E  *  A  L  F  *  K  A  I  C  R  A  F  T  A  S  W  R  S  R  L  *  C  I  S  D  T  *  W  D  H  V  F  T  L  F  T  L  P  T  S  N  *  C  *  *  T  S  R  S  T  S  E  N  *  W  C  I  F  C  *  G  V  S  H  C  I  R  G  I  K  V  G  T  V  E  A  F  T  E  E  *  K  L  C  *  S  P  C  R  H  *  H  G  S  S  N  *  H  V  G  L  A  G  R  K  K  P  T  G  *  *  F  D  *  R  *  H  S  *  N   : D  I  *  R  V  S  *  S  L  *  Q  R  Q  Q  K  I  A  P  P   : C  F  R  T  I  T  E  Y  T  E  V  I  S  Q  S  R  K  L  *  R  F  :  A  I  R  S  Q  F  K  E  K  E  R  S  L  N  L  P  I  G  *  I  G  F  L  G  E  Q  A  D  M  V  D  N  C  I  V  A  V  V  A  K  W  W  F  L  R  N  C  F  F  I  F  V  K  L  K  T  *  N  L  G  A  Y  I  A  I  M  L  E  Y  I  C  T  V  L  Y  D  P  L  V  T  L  L  S  F  L  F  S  N  G  N  F  Y  T  V  N  G  N  L  Y  W  K  L  A  S  L  S  I  L  I  Y  S  F  L  I  Q  S  S  T  V  *  :  K  F  M  I  C  W  *  H  M  K  *  *  K  *  </first_frame>
            <second_frame>  R  R  L  *  A  D  M  P  S  D  T  A  R  K  N  A  A  I  A  N  S  I  V  T  D  Y  K  N  E  R  R  N  F  D  G  P   : D  S  S  C  L  R  V  N  E  D  T  N  R  S  I  A  E  E  L  T  L  S  S  P  P  I  G  I  S  T  A  I  E  K   : V  N  R  G  I  W  A  T  Q  A  M  N  E  A  I  L  D  E  A  F  H  :  N  S  S  K  V  I  L  I  F  S  V  N  T  S  G  Y  F  Q  G  Y  A  Q  M  I  S  S  V  G  L  R  R  D  Q  V  W  S  Q  G  N  G  G  R  N  S  W  G  R  S  F  E  V  N  W  L  R  L  Y  D  L  P  F  Q  R  T  L  H  L  K  N  P  W  N  Q  N  K  P  V  K  I  S  R  D  C  Q  :  E  L  P  P  D  I  G  E  A  L  C  E  L  L  D  G  Q  D  A  L  D  V  N  L  K  M :   D  V  F  A  R  N  E  L  S  S  K  R  P  Y  V  E  P  S  L  H  L  G  D  Q  D  Y  N  A  S  L  I  P  N  G  T  M  F  S  P  S  L  L  Y  Q  H  Q  I  D  A  S  R  L  H  V  A  P  L  R  I  N  G  V  F  S  A  E  E  S  A  I  A  S  G  E  S  K  S  G  Q  S  R  H  S  Q  R  N  R  S  F  A  N  L  H  V  D  T  D  M  G  P  Q  I  N  M  W  G  L  P  A  E  R  S  P  L  A  S  N  L  T  E  D  D  I  L  E  M  :  T  Y  E  E  Y  L  E  A  C  S  R  G  S  K  R  S  P  H  P  :  V  S  G  P  S  R  S  T  Q  R  S  L  A  S  Q  E  N  C  E  D  S :   Q  S  G  R  S  S  K  K  R  R  G  H  *  I  S  P  L  V  E  L  V  F  L  A  S  R  L  I  W  L  I  I  V  L  L  Q  L  S  R  S  G  G  S  C  E  I  V  S  L  F  L  *  N  L  K  L  K  T  *  E  H  I  L  L  *  C  W  S  I  S  V  L  Y  Y  M  T  L  L  S  P  F  S  P  S  C  F  R  M  E  T  F  I  L  L  M  G  T  C  T  G  N  *  Q  V  S  L  Y  S  Y  I  H  S  *  F  S  Q  V  L  Y  R :   N  L  *  Y  V  G  N  I  *  S  N  R  S  N </second_frame>
            <third_frame>   G  G  C  K  Q  I  C  H  Q  I  L  Q  E  K  M  Q  L  *  L  I  P  *  *  P  T  T  K  M  K  E  G  I  L  T  D  Q  :  I  V  H  A  S  E  *  M  R  I  P  I  V  L  *  Q  R  S  S  H  F  H  L  R  R  L  E  F  Q  L  Q  L  K  R  :  *  T  E  G  F  G  L  L  K  P  *  M  R  P  F  W  M  K  H  F  I :   I  P  A  R  L  Y  *  Y  S  V  S  T  L  V  G  I  S  K  G  M  P  K  *  F  L  L  S  V  *  E  E  T  K  F  G  V  K  E  M  V  V  V  I  L  G  V  E  A  L  K  *  I  G  C  D  C  M  I  C  L  F  K  E  L  F  T  L  R  I  H  G  I  K  T  N  Q  S  K  L  V  E  I  V  R :   S  Y  L  Q  I  L  V  K  L  Y  V  S  S  L  M  D  R  M  L  W  M  L  I  *  K   : W  M  S  L  Q  G  M  S  S  L  L  K  G  H  M  *  S  L  H  C  I  L  E  I  K  T  I  M  H  L  *  Y  L  M  G  P  C  F  H  P  L  Y  S  T  N  I  K  L  M  L  V  D  F  T  *  H  L  *  E  L  M  V  Y  F  L  L  R  S  Q  P  L  H  Q  G  N  Q  S  R  D  S  R  G  I  H  R  G  I  E  A  L  L  I  S  M  *  T  L  T  W  V  L  K  L  T  C  G  A  C  R  Q  K  E  A  H  W  L  V  I  *  L  K  M  T  F  L  K  * :   H  M  K  S  I  L  K  L  V  A  E  A  A  K  D  R  P  T  L :   F  Q  D  H  H  G  V  H  R  G  H  *  P  V  K  K  T  V  K  I   : R  N  Q  V  A  V  Q  R  K  G  E  V  T  K  S  P  H  W  L  N  W  F  S  W  R  A  G  *  Y  G  *  *  L  Y  C  C  S  C  R  E  V  V  V  L  A  K  L  F  L  Y  F  C  K  T  *  N  L  K  L  R  S  I  Y  C  Y  N  V  G  V  Y  L  Y  C  I  I  *  P  S  C  H  P  S  L  L  P  V  F  E  W  K  L  L  Y  C  *  W  E  L  V  L  E  I  S  K  S  L  Y  T  H  I  F  I  L  D  S  V  K  Y  C  I   : E  I  Y  D  M  L  V  T  Y  E  V  I  E  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9922" stop="10018"/>
                    <exon start="13100" stop="13201"/>
                    <exon start="13268" stop="13329"/>
                    <exon start="13444" stop="13695"/>
                    <exon start="13797" stop="13873"/>
                    <exon start="14021" stop="14399"/>
                    <exon start="15818" stop="15874"/>
                    <exon start="16748" stop="16809"/>
                    <exon start="16891" stop="16930"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1125</number_coding_nucleotides>
                  <number_encoded_amino_acids>375</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ADMPSDTARKNAAIANSIVTDYKNERRNFDGPDSSCLRVNEDTNRSIAEELTLSSPPIGISTAIEKVNRGIWATQAMNEAILDEAFHNSSKVILIFSVNTSGYFQGYAQMISSVGLRRDQVWSQGNGGRNSWGRSFEVNWLRLYDLPFQRTLHLKNPWNQNKPVKISRDCQELPPDIGEALCELLDGQDALDVNLKMDVFARNELSSKRPYVEPSLHLGDQDYNASLIPNGTMFSPSLLYQHQIDASRLHVAPLRINGVFSAEESAIASGESKSGQSRHSQRNRSFANLHVDTDMGPQINMWGLPAERSPLASNLTEDDILEMTYEEYLEACSRGSKRSPHPVSGPSRSTQRSLASQENCEDSQSGRSSKKRRGH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="17912" e_stop="18054"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="17912" e_stop="18054" e_length="143"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17912" stop="18054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17912" stop="18054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17912" stop="18054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17912" stop="18054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17912" stop="18054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745041" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAATCTCTTGTTGATTATAATTGTTTATCATGTTTTAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTGCGAATAAGTATGCCCAGACTATACCATCCTAAAGTTGAAACCAATAGGCAAGAAGG</gDNA_template>
            <first_frame> I  I  S  C  *  L  *  L  F  I  M  F  *  *  C  Y  N  N  H  L  *  K  V  C  Y  R  N  I  L  R  I  S  M  P  R  L  Y  H  P  K  V  E  T  N  R  Q  E   </first_frame>
            <second_frame>  *  S  L  V  D  Y  N  C  L  S  C  F  N  N  V  I  I  T  I  F  R  K  F  A  T  E  I  F  C  E  *  V  C  P  D  Y  T  I  L  K  L  K  P  I  G  K  K  </second_frame>
            <third_frame>   N  L  L  L  I  I  I  V  Y  H  V  L  I  M  L  *  *  P  S  L  E  S  L  L  Q  K  Y  S  A  N  K  Y  A  Q  T  I  P  S  *  S  *  N  Q  *  A  R  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0190J03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="42051" PGL_stop="41568"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42051" e_stop="41568"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="42051" e_stop="41568" e_length="484"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42051" stop="41568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354702" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAACATAAGACAAAAGTAAAAATTGAACTAATAGATGAAAGTAGTATAATAACACAGAAACCATTAAAATATAACTTTGATGATTTAAAAGAATTCAAAATACATATAGATGAACTATTAGAAAATAATTACATACAAGAAAGTAATAGTAAACATACAATTCCAGCGTTTATAGTTATAAAAATAGTGAACAAAAAAGAGGTAAAAGCAGAATGGTTATAGATTATCGCAATTTAAATGCTAAAACTAAAACATATAATTACCCAATACCAAATAAAATACTAAAAATAGGACAGATACAAGGATATAATTATTTCAGTAAATTCGATTGTAAATCAGGATTTTATCACCTAAAACTAGAAGAAGAATCTAAACAGCTAACAGCATTCACAGTACCGCAAGGTTTCTATAAATGGAATGTATTACCATTTGGATATAAGAACGCACCAGGTAGATATCAACATTTTATGGACAACCACTTT</gDNA_template>
            <first_frame> K  N  I  R  Q  K  *  K  L  N  *  *  M  K  V  V  *  *  H  R  N  H  *  N  I  T  L  M  I  *  K  N  S  K  Y  I  *  M  N  Y  *  K  I  I  T  Y  K  K  V  I  V  N  I  Q  F  Q  R  L  *  L  *  K  *  *  T  K  K  R  *  K  Q  N  G  Y  R  L  S  Q  F  K  C  *  N  *  N  I  *  L  P  N  T  K  *  N  T  K  N  R  T  D  T  R  I  *  L  F  Q  *  I  R  L  *  I  R  I  L  S  P  K  T  R  R  R  I  *  T  A  N  S  I  H  S  T  A  R  F  L  *  M  E  C  I  T  I  W  I  *  E  R  T  R  *  I  S  T  F  Y  G  Q  P  L  </first_frame>
            <second_frame>  K  T  *  D  K  S  K  N  *  T  N  R  *  K  *  Y  N  N  T  E  T  I  K  I  *  L  *  *  F  K  R  I  Q  N  T  Y  R  *  T  I  R  K  *  L  H  T  R  K  *  *  *  T  Y  N  S  S  V  Y  S  Y  K  N  S  E  Q  K  R  G  K  S  R  M  V  I  D  Y  R  N  L  N  A  K  T  K  T  Y  N  Y  P  I  P  N  K  I  L  K  I  G  Q  I  Q  G  Y  N  Y  F  S  K  F  D  C  K  S  G  F  Y  H  L  K  L  E  E  E  S  K  Q  L  T  A  F  T  V  P  Q  G  F  Y  K  W  N  V  L  P  F  G  Y  K  N  A  P  G  R  Y  Q  H  F  M  D  N  H  F </second_frame>
            <third_frame>   K  H  K  T  K  V  K  I  E  L  I  D  E  S  S  I  I  T  Q  K  P  L  K  Y  N  F  D  D  L  K  E  F  K  I  H  I  D  E  L  L  E  N  N  Y  I  Q  E  S  N  S  K  H  T  I  P  A  F  I  V  I  K  I  V  N  K  K  E  V  K  A  E  W  L  *  I  I  A  I  *  M  L  K  L  K  H  I  I  T  Q  Y  Q  I  K  Y  *  K  *  D  R  Y  K  D  I  I  I  S  V  N  S  I  V  N  Q  D  F  I  T  *  N  *  K  K  N  L  N  S  *  Q  H  S  Q  Y  R  K  V  S  I  N  G  M  Y  Y  H  L  D  I  R  T  H  Q  V  D  I  N  I  L  W  T  T  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41897" stop="41568"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TYNSSVYSYKNSEQKRGKSRMVIDYRNLNAKTKTYNYPIPNKILKIGQIQGYNYFSKFDCKSGFYHLKLEEESKQLTAFTVPQGFYKWNVLPFGYKNAPGRYQHFMDNHF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="44164" PGL_stop="43405"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44164" e_stop="43405"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="44164" e_stop="43405" e_length="760"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44164" stop="43405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343544" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTATTATATAAAAAACTATAAAATAAAAAGACCATATAGACCAAAAAGAAAAATATCCCAATTTACTTGTTATAATTGCGGAAAGATAGGACATTTAGCTAGAGACTGTAAACTACCCAAAGATTCAAAAAGGAAGCAAATTGCAGAAGTAATTATAGATAATGATAAATATATGCAACTAGAATACATAGACTATGAATTAAGTGAAAACGATAGTATATATGAAGTATCAGATACAGAAACTAAAAATGAAGAAGAAAATATTAATCTAAATAATAATGAAACAGATGAAGAAATATAATGTCTGAGGATGAGATAAAAATAATATCTAAAGAAGATTATCAAAATGAAGAATTATCAGACCAAAAAATTATATTTGATAATACAATTTTTGAACAAATAAAAGGAAAAGAATTAGACTTAAGTGTTGAAAAAGTACTTGAAATACCTACTTTGAGAAATTGGTTTAAAAGAAAAGGAAGAATATTATGTAGTTAGTCAGAAAGAACATATTATAGATTGTAAATATACAAGAGGAAAAACATATATACCTATACTAAGTAAACGAATAATAAATAAAGAAATACAAGATATAAAAGCTAAAACACCTATAAAATATGTACATTTAGGAGGAACAGAAATATTAATAAAAGTTTGTTTTAGAGAAGAAATAGATACGCCTATTGAAATATACTTAGCAGATGACAGAATCATACACCCTATAGAAAAAAGTGTAATTAGTGCAGTAAAAGGAAACTTA</gDNA_template>
            <first_frame> V  L  Y  K  K  L  *  N  K  K  T  I  *  T  K  K  K  N  I  P  I  Y  L  L  *  L  R  K  D  R  T  F  S  *  R  L  *  T  T  Q  R  F  K  K  E  A  N  C  R  S  N  Y  R  *  *  *  I  Y  A  T  R  I  H  R  L  *  I  K  *  K  R  *  Y  I  *  S  I  R  Y  R  N  *  K  *  R  R  K  Y  *  S  K  *  *  *  N  R  *  R  N  I  M  S  E  D  E  I  K  I  I  S  K  E  D  Y  Q  N  E  E  L  S  D  Q  K  I  I  F  D  N  T  I  F  E  Q  I  K  G  K  E  L  D  L  S  V  E  K  V  L  E  I  P  T  L  R  N  W  F  K  R  K  G  R  I  L  C  S  *  S  E  R  T  Y  Y  R  L  *  I  Y  K  R  K  N  I  Y  T  Y  T  K  *  T  N  N  K  *  R  N  T  R  Y  K  S  *  N  T  Y  K  I  C  T  F  R  R  N  R  N  I  N  K  S  L  F  *  R  R  N  R  Y  A  Y  *  N  I  L  S  R  *  Q  N  H  T  P  Y  R  K  K  C  N  *  C  S  K  R  K  L  </first_frame>
            <second_frame>  Y  Y  I  K  N  Y  K  I  K  R  P  Y  R  P  K  R  K  I  S  Q  F  T  C  Y  N  C  G  K  I  G  H  L  A  R  D  C  K  L  P  K  D  S  K  R  K  Q  I  A  E  V  I  I  D  N  D  K  Y  M  Q  L  E  Y  I  D  Y  E  L  S  E  N  D  S  I  Y  E  V  S  D  T  E  T  K  N  E  E  E  N  I  N  L  N  N  N  E  T  D  E  E  I  *  C  L  R  M  R  *  K  *  Y  L  K  K  I  I  K  M  K  N  Y  Q  T  K  K  L  Y  L  I  I  Q  F  L  N  K  *  K  E  K  N  *  T  *  V  L  K  K  Y  L  K  Y  L  L  *  E  I  G  L  K  E  K  E  E  Y  Y  V  V  S  Q  K  E  H  I  I  D  C  K  Y  T  R  G  K  T  Y  I  P  I  L  S  K  R  I  I  N  K  E  I  Q  D  I  K  A  K  T  P  I  K  Y  V  H  L  G  G  T  E  I  L  I  K  V  C  F  R  E  E  I  D  T  P  I  E  I  Y  L  A  D  D  R  I  I  H  P  I  E  K  S  V  I  S  A  V  K  G  N  L </second_frame>
            <third_frame>   I  I  *  K  T  I  K  *  K  D  H  I  D  Q  K  E  K  Y  P  N  L  L  V  I  I  A  E  R  *  D  I  *  L  E  T  V  N  Y  P  K  I  Q  K  G  S  K  L  Q  K  *  L  *  I  M  I  N  I  C  N  *  N  T  *  T  M  N  *  V  K  T  I  V  Y  M  K  Y  Q  I  Q  K  L  K  M  K  K  K  I  L  I  *  I  I  M  K  Q  M  K  K  Y  N  V  *  G  *  D  K  N  N  I  *  R  R  L  S  K  *  R  I  I  R  P  K  N  Y  I  *  *  Y  N  F  *  T  N  K  R  K  R  I  R  L  K  C  *  K  S  T  *  N  T  Y  F  E  K  L  V  *  K  K  R  K  N  I  M  *  L  V  R  K  N  I  L  *  I  V  N  I  Q  E  E  K  H  I  Y  L  Y  *  V  N  E  *  *  I  K  K  Y  K  I  *  K  L  K  H  L  *  N  M  Y  I  *  E  E  Q  K  Y  *  *  K  F  V  L  E  K  K  *  I  R  L  L  K  Y  T  *  Q  M  T  E  S  Y  T  L  *  K  K  V  *  L  V  Q  *  K  E  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43707" stop="43405"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIGLKEKEEYYVVSQKEHIIDCKYTRGKTYIPILSKRIINKEIQDIKAKTPIKYVHLGGTEILIKVCFREEIDTPIEIYLADDRIIHPIEKSVISAVKGNL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44163" stop="43864"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYIKNYKIKRPYRPKRKISQFTCYNCGKIGHLARDCKLPKDSKRKQIAEVIIDNDKYMQLEYIDYELSENDSIYEVSDTETKNEEENINLNNNETDEEI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="45126" PGL_stop="44361"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45126" e_stop="44361"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="45126" e_stop="44361" e_length="766"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45126" stop="44361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578125" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATTAGAAATAAACACAGGAGATATGAATCGACCTAGTACGTCAAGAGTTAAAACTCCAGACAATAGTCCCAGAAATAGTCCTAGAATTAGTCCTAGATGGACACCACCAACTTATTATACAGAAAGTTATCAACAATCAGATAGAACTAACGCAATATGGAATAGTAGATTAAATAAAAATTGGACACCAAGACCAATAAACGAACAATATAATTTCTTAGATCTAGATTGTGTCACAGATACAAATAAAGCAATATTACTATGGATAGGAAATATATCTAAGCAACTAATAGATAACAAAATAAAACAACAGAAACACCAAGGTATATAGAAAGAACATTTGTAGGAACAACAAGATTATGGATAGAAAATCTACCCTTAGAAAGTTTAGAAGTACTTAGAAGTGACAAGAAAATGGATGGATCTCCATCATCAACAAATATAGATATACTAGATAAATATGAATCAGCAATAAGAAGTAAATTTGGAGGTATGACCACAGATATAAGAGAACAAAACAGAGAAAAAATAATAAATAGACAACTTATGACAAAATTAGCTATATGTAAAATGTGTTATATAGAAGAATACACATGTGCATTTAAGGAATACTATTACAAAGCAAAATACAATTTAGATGAAGCAAAAGAAATAAGACAACAATATTTTACAAAATTACCAGAACCATTTAGCACAAAAATAATTAAAGATTGGAATGATGAAGGATTAGTAGATACTTTATGAGGTAGAATAAAATTTTTAC</gDNA_template>
            <first_frame> K  I  R  N  K  H  R  R  Y  E  S  T  *  Y  V  K  S  *  N  S  R  Q  *  S  Q  K  *  S  *  N  *  S  *  M  D  T  T  N  L  L  Y  R  K  L  S  T  I  R  *  N  *  R  N  M  E  *  *  I  K  *  K  L  D  T  K  T  N  K  R  T  I  *  F  L  R  S  R  L  C  H  R  Y  K  *  S  N  I  T  M  D  R  K  Y  I  *  A  T  N  R  *  Q  N  K  T  T  E  T  P  R  Y  I  E  R  T  F  V  G  T  T  R  L  W  I  E  N  L  P  L  E  S  L  E  V  L  R  S  D  K  K  M  D  G  S  P  S  S  T  N  I  D  I  L  D  K  Y  E  S  A  I  R  S  K  F  G  G  M  T  T  D  I  R  E  Q  N  R  E  K  I  I  N  R  Q  L  M  T  K  L  A  I  C  K  M  C  Y  I  E  E  Y  T  C  A  F  K  E  Y  Y  Y  K  A  K  Y  N  L  D  E  A  K  E  I  R  Q  Q  Y  F  T  K  L  P  E  P  F  S  T  K  I  I  K  D  W  N  D  E  G  L  V  D  T  L  *  G  R  I  K  F  L  </first_frame>
            <second_frame>  K  L  E  I  N  T  G  D  M  N  R  P  S  T  S  R  V  K  T  P  D  N  S  P  R  N  S  P  R  I  S  P  R  W  T  P  P  T  Y  Y  T  E  S  Y  Q  Q  S  D  R  T  N  A  I  W  N  S  R  L  N  K  N  W  T  P  R  P  I  N  E  Q  Y  N  F  L  D  L  D  C  V  T  D  T  N  K  A  I  L  L  W  I  G  N  I  S  K  Q  L  I  D  N  K  I  K  Q  Q  K  H  Q  G  I  *  K  E  H  L  *  E  Q  Q  D  Y  G  *  K  I  Y  P  *  K  V  *  K  Y  L  E  V  T  R  K  W  M  D  L  H  H  Q  Q  I  *  I  Y  *  I  N  M  N  Q  Q  *  E  V  N  L  E  V  *  P  Q  I  *  E  N  K  T  E  K  K  *  *  I  D  N  L  *  Q  N  *  L  Y  V  K  C  V  I  *  K  N  T  H  V  H  L  R  N  T  I  T  K  Q  N  T  I  *  M  K  Q  K  K  *  D  N  N  I  L  Q  N  Y  Q  N  H  L  A  Q  K  *  L  K  I  G  M  M  K  D  *  *  I  L  Y  E  V  E  *  N  F  Y </second_frame>
            <third_frame>   N  *  K  *  T  Q  E  I  *  I  D  L  V  R  Q  E  L  K  L  Q  T  I  V  P  E  I  V  L  E  L  V  L  D  G  H  H  Q  L  I  I  Q  K  V  I  N  N  Q  I  E  L  T  Q  Y  G  I  V  D  *  I  K  I  G  H  Q  D  Q  *  T  N  N  I  I  S  *  I  *  I  V  S  Q  I  Q  I  K  Q  Y  Y  Y  G  *  E  I  Y  L  S  N  *  *  I  T  K  *  N  N  R  N  T  K  V  Y  R  K  N  I  C  R  N  N  K  I  M  D  R  K  S  T  L  R  K  F  R  S  T  *  K  *  Q  E  N  G  W  I  S  I  I  N  K  Y  R  Y  T  R  *  I  *  I  S  N  K  K  *  I  W  R  Y  D  H  R  Y  K  R  T  K  Q  R  K  N  N  K  *  T  T  Y  D  K  I  S  Y  M  *  N  V  L  Y  R  R  I  H  M  C  I  *  G  I  L  L  Q  S  K  I  Q  F  R  *  S  K  R  N  K  T  T  I  F  Y  K  I  T  R  T  I  *  H  K  N  N  *  R  L  E  *  *  R  I  S  R  Y  F  M  R  *  N  K  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44826" stop="44380"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNKTTETPRYIERTFVGTTRLWIENLPLESLEVLRSDKKMDGSPSSTNIDILDKYESAIRSKFGGMTTDIREQNREKIINRQLMTKLAICKMCYIEEYTCAFKEYYYKAKYNLDEAKEIRQQYFTKLPEPFSTKIIKDWNDEGLVDTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="46735" PGL_stop="46593"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46735" e_stop="46593"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="46735" e_stop="46593" e_length="143"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46735" stop="46593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46735" stop="46593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46735" stop="46593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46735" stop="46593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745041" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAATCTCTTGTTGATTATAATTGTTTATCATGTTTTAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTGCGAATAAATATGCCCAGACTATGTCATCCTAAAGTTGAAACCAATAGGCAAGAAGA</gDNA_template>
            <first_frame> I  I  S  C  *  L  *  L  F  I  M  F  *  *  C  Y  N  N  H  L  *  K  V  C  Y  R  N  I  L  R  I  N  M  P  R  L  C  H  P  K  V  E  T  N  R  Q  E   </first_frame>
            <second_frame>  *  S  L  V  D  Y  N  C  L  S  C  F  N  N  V  I  I  T  I  F  R  K  F  A  T  E  I  F  C  E  *  I  C  P  D  Y  V  I  L  K  L  K  P  I  G  K  K  </second_frame>
            <third_frame>   N  L  L  L  I  I  I  V  Y  H  V  L  I  M  L  *  *  P  S  L  E  S  L  L  Q  K  Y  S  A  N  K  Y  A  Q  T  M  S  S  *  S  *  N  Q  *  A  R  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0190J03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="48246" PGL_stop="54407"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48269" e_stop="48366"/>
            <exon e_start="51458" e_stop="51811"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.918" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48269" e_stop="48366" e_length="98"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.918">
            <gDNA_intron_boundary i_start="48367" i_stop="51457" i_length="3091"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="51458" e_stop="51811" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48269" stop="48366"/>
              <exon start="51458" stop="51811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48269" stop="48366"/>
              <exon start="51458" stop="51811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48270" stop="48366"/>
              <exon start="51458" stop="51811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278923" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAAAGGATAAGGGCTGAAGATGTAATATGTAAGCTCAAGGACGATGGCGATTTCGATAAACTTCGCCTCAAAATTGTTCGCCGAATGAAAGAAAAT : TTAGCCCGCTGTCATGTATTCGAACCCTGCTGCAGACTAAAGCCTGTTACTTAAGTGAAGAAGGGTACAAGCACTGGCCTATCGAGTTTTGCACCGTCCTCTGCTGACCCTGGAGGATTTCACGGTTATTTTAAAAACAAGCAAGAGAAGAAGGAGCATTTTATGCTAAAGTTTTGAATCAATGAAATATATTGTTTATATTGTTCAATATCTTTGGATCAATTAAGGCTGAATAAATTGTTTATCAATTTGTATTTTACTCGTGTCATGTCACTCTACTTTCAAAGTTTGTATCCTCCATAATGAGTTAATACTGAAAAAAGATGAATTGCTTTAACACCAAGAAAGAACCAT</gDNA_template>
            <first_frame> G  K  G  *  G  L  K  M  *  Y  V  S  S  R  T  M  A  I  S  I  N  F  A  S  K  L  F  A  E  *  K  K  I :   *  P  A  V  M  Y  S  N  P  A  A  D  *  S  L  L  L  K  *  R  R  V  Q  A  L  A  Y  R  V  L  H  R  P  L  L  T  L  E  D  F  T  V  I  L  K  T  S  K  R  R  R  S  I  L  C  *  S  F  E  S  M  K  Y  I  V  Y  I  V  Q  Y  L  W  I  N  *  G  *  I  N  C  L  S  I  C  I  L  L  V  S  C  H  S  T  F  K  V  C  I  L  H  N  E  L  I  L  K  K  D  E  L  L  *  H  Q  E  R  T   </first_frame>
            <second_frame>  E  K  D  K  G  *  R  C  N  M  *  A  Q  G  R  W  R  F  R  *  T  S  P  Q  N  C  S  P  N  E  R  K   : F  S  P  L  S  C  I  R  T  L  L  Q  T  K  A  C  Y  L  S  E  E  G  Y  K  H  W  P  I  E  F  C  T  V  L  C  *  P  W  R  I  S  R  L  F  *  K  Q  A  R  E  E  G  A  F  Y  A  K  V  L  N  Q  *  N  I  L  F  I  L  F  N  I  F  G  S  I  K  A  E  *  I  V  Y  Q  F  V  F  Y  S  C  H  V  T  L  L  S  K  F  V  S  S  I  M  S  *  Y  *  K  K  M  N  C  F  N  T  K  K  E  P  </second_frame>
            <third_frame>   K  R  I  R  A  E  D  V  I  C  K  L  K  D  D  G  D  F  D  K  L  R  L  K  I  V  R  R  M  K  E  N  :  L  A  R  C  H  V  F  E  P  C  C  R  L  K  P  V  T  *  V  K  K  G  T  S  T  G  L  S  S  F  A  P  S  S  A  D  P  G  G  F  H  G  Y  F  K  N  K  Q  E  K  K  E  H  F  M  L  K  F  *  I  N  E  I  Y  C  L  Y  C  S  I  S  L  D  Q  L  R  L  N  K  L  F  I  N  L  Y  F  T  R  V  M  S  L  Y  F  Q  S  L  Y  P  P  *  *  V  N  T  E  K  R  *  I  A  L  T  P  R  K  N  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0190J03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="48246" e_stop="48366"/>
            <exon e_start="53257" e_stop="53372"/>
            <exon e_start="53916" e_stop="54407"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="1.000" e_score="0.975"/>
          <exon-intron don_prob="0.728" acc_prob="0.808" e_score="0.991"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="48246" e_stop="48366" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="1.000">
            <gDNA_intron_boundary i_start="48367" i_stop="53256" i_length="4890"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="53257" e_stop="53372" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.728" acc_prob="0.808">
            <gDNA_intron_boundary i_start="53373" i_stop="53915" i_length="543"/>
          </intron>
          <exon e_serial="3" e_score="0.959">
            <gDNA_exon_boundary e_start="53916" e_stop="54407" e_length="492"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48246" stop="48366"/>
              <exon start="53257" stop="53372"/>
              <exon start="53916" stop="54407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48246" stop="48366"/>
              <exon start="53257" stop="53372"/>
              <exon start="53916" stop="54407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445557" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAGAATGGGGATGGAACAAATGGGAAAAGGATAAGGGCTGAAGATGTAATATGTAAGCTCAAGGACGATGGCGATTTCGATAAACTTCGCCTCAAAATTGTTCGCCGAATGAAAGAAAAT : GTAGAGTTGCGAAATAGCTTAAGAGCTACAGTGAAAGAATCAGCAGCACTTAACCGTCCAGGTGCAGAAAATATGAAACTAAGGCAACTGTCCGATGCTATATATCAAGAAGTTGG : GGAAAAAGCCATGAGTAAAATTTCAGATGATTTGTGGAATACAATCAGAACCGGTGATGGCATTCAAACGGAGATAACTGAAACGGTTCAATCAGTTTACAGTAAGTTATTGAACCCACAGCTAAATGAAGCAGGTGAATCGGCCTTTCATTCAGACTTGCAGCCAGCTCAGAATGGAGTTGAAAGTAATGGACATCTTGCTGTTTCTGACAGTTGTATTGATGCCACATTTTCTGCTGATGCGGAACCAAGTGAACCTCCTGGTTTTGCCCAATTAAGTTCAAATCGGAACGGGAAAAGTGACCATAAGGTATCACCGAAAGAAGTGTCAGGAATTCCTGTTCCTTCTGATGGAAAAGCAAAAGAAACATATACCCAGTCAGAGAACAACTGCTCACTTGACCCTTTGATACCCGAAAGTGTGGATGTGGGTGCGCCACCTGGCTTTGCTATAGGCACAATAGAGAAGAATCCAGATGATGTTAATGATGA</gDNA_template>
            <first_frame> G  E  W  G  W  N  K  W  E  K  D  K  G  *  R  C  N  M  *  A  Q  G  R  W  R  F  R  *  T  S  P  Q  N  C  S  P  N  E  R  K   : C  R  V  A  K  *  L  K  S  Y  S  E  R  I  S  S  T  *  P  S  R  C  R  K  Y  E  T  K  A  T  V  R  C  Y  I  S  R  S  W  :  G  K  S  H  E  *  N  F  R  *  F  V  E  Y  N  Q  N  R  *  W  H  S  N  G  D  N  *  N  G  S  I  S  L  Q  *  V  I  E  P  T  A  K  *  S  R  *  I  G  L  S  F  R  L  A  A  S  S  E  W  S  *  K  *  W  T  S  C  C  F  *  Q  L  Y  *  C  H  I  F  C  *  C  G  T  K  *  T  S  W  F  C  P  I  K  F  K  S  E  R  E  K  *  P  *  G  I  T  E  R  S  V  R  N  S  C  S  F  *  W  K  S  K  R  N  I  Y  P  V  R  E  Q  L  L  T  *  P  F  D  T  R  K  C  G  C  G  C  A  T  W  L  C  Y  R  H  N  R  E  E  S  R  *  C  *  *  * </first_frame>
            <second_frame>  E  N  G  D  G  T  N  G  K  R  I  R  A  E  D  V  I  C  K  L  K  D  D  G  D  F  D  K  L  R  L  K  I  V  R  R  M  K  E  N  :  V  E  L  R  N  S  L  R  A  T  V  K  E  S  A  A  L  N  R  P  G  A  E  N  M  K  L  R  Q  L  S  D  A  I  Y  Q  E  V  G :   E  K  A  M  S  K  I  S  D  D  L  W  N  T  I  R  T  G  D  G  I  Q  T  E  I  T  E  T  V  Q  S  V  Y  S  K  L  L  N  P  Q  L  N  E  A  G  E  S  A  F  H  S  D  L  Q  P  A  Q  N  G  V  E  S  N  G  H  L  A  V  S  D  S  C  I  D  A  T  F  S  A  D  A  E  P  S  E  P  P  G  F  A  Q  L  S  S  N  R  N  G  K  S  D  H  K  V  S  P  K  E  V  S  G  I  P  V  P  S  D  G  K  A  K  E  T  Y  T  Q  S  E  N  N  C  S  L  D  P  L  I  P  E  S  V  D  V  G  A  P  P  G  F  A  I  G  T  I  E  K  N  P  D  D  V  N  D   </second_frame>
            <third_frame>   R  M  G  M  E  Q  M  G  K  G  *  G  L  K  M  *  Y  V  S  S  R  T  M  A  I  S  I  N  F  A  S  K  L  F  A  E  *  K  K  M :   *  S  C  E  I  A  *  E  L  Q  *  K  N  Q  Q  H  L  T  V  Q  V  Q  K  I  *  N  *  G  N  C  P  M  L  Y  I  K  K  L   : G  K  K  P  *  V  K  F  Q  M  I  C  G  I  Q  S  E  P  V  M  A  F  K  R  R  *  L  K  R  F  N  Q  F  T  V  S  Y  *  T  H  S  *  M  K  Q  V  N  R  P  F  I  Q  T  C  S  Q  L  R  M  E  L  K  V  M  D  I  L  L  F  L  T  V  V  L  M  P  H  F  L  L  M  R  N  Q  V  N  L  L  V  L  P  N  *  V  Q  I  G  T  G  K  V  T  I  R  Y  H  R  K  K  C  Q  E  F  L  F  L  L  M  E  K  Q  K  K  H  I  P  S  Q  R  T  T  A  H  L  T  L  *  Y  P  K  V  W  M  W  V  R  H  L  A  L  L  *  A  Q  *  R  R  I  Q  M  M  L  M  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48247" stop="48366"/>
                    <exon start="53257" stop="53372"/>
                    <exon start="53916" stop="54405"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENGDGTNGKRIRAEDVICKLKDDGDFDKLRLKIVRRMKENVELRNSLRATVKESAALNRPGAENMKLRQLSDAIYQEVGEKAMSKISDDLWNTIRTGDGIQTEITETVQSVYSKLLNPQLNEAGESAFHSDLQPAQNGVESNGHLAVSDSCIDATFSADAEPSEPPGFAQLSSNRNGKSDHKVSPKEVSGIPVPSDGKAKETYTQSENNCSLDPLIPESVDVGAPPGFAIGTIEKNPDDVND</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="56722" PGL_stop="54180"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56722" e_stop="56700"/>
            <exon e_start="54817" e_stop="54180"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.739"/>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.739">
            <gDNA_exon_boundary e_start="56722" e_stop="56700" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="56699" i_stop="54818" i_length="1882"/>
          </intron>
          <exon e_serial="2" e_score="0.951">
            <gDNA_exon_boundary e_start="54817" e_stop="54180" e_length="638"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56722" stop="56700"/>
              <exon start="54817" stop="54180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415307" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCTTTAATATTTTTTATTTTTT : GGAGAAAAAAAATCCAACTTGAGCAGGTTAGGAAGAAATATTGCGGTTAACATCTAAAGAACCAACAAAATTAACTTAGTTTAGACTACATCTTACAACAAGACATCATGTCATCTCCAATGTTCATATTTGAAGACTATGAGTTTTGATAGTACTAATCTGTTATCCAAGATCATGCACAAGCGACATAGTTAAGGCTTCTAACCTTGGGAAATTGAAGAAAGAGAGGTCATGAGCTGCTAGTCGGTGCAGTGAAAGTTAAGTACTCTCTGCAAGTACCAACAAAAGCTTCTTGAACTTGATACAATAATGACCAACCAAATATGGCTAACCTTTCCCAAAAATATAAACAGAACTATATGAACAACTTAATAAGCCATCAGCCAAATCCTGGAGGCACTTCAGGATCTTCATCATTAACATCATCTGGATTCTTCTCTATTGTGCCTATAGCAAAGCCAGGTGGCGCACCCACATCCACACTTTCGGGTATCAAAGGGTCAAGTGAGCAGTTGTTCTCTGACTGGGTATATGTTTCTTTTGCTTTTCCATCAGAAGGAACAGGAATTCCTGACACTTCTTTCGGTGATACCTTATGGTCACTTTTCCCGTTCCGATTTGAACTTAATTGGGCAAAA</gDNA_template>
            <first_frame> S  F  N  I  F  Y  F  L :   E  K  K  N  P  T  *  A  G  *  E  E  I  L  R  L  T  S  K  E  P  T  K  L  T  *  F  R  L  H  L  T  T  R  H  H  V  I  S  N  V  H  I  *  R  L  *  V  L  I  V  L  I  C  Y  P  R  S  C  T  S  D  I  V  K  A  S  N  L  G  K  L  K  K  E  R  S  *  A  A  S  R  C  S  E  S  *  V  L  S  A  S  T  N  K  S  F  L  N  L  I  Q  *  *  P  T  K  Y  G  *  P  F  P  K  I  *  T  E  L  Y  E  Q  L  N  K  P  S  A  K  S  W  R  H  F  R  I  F  I  I  N  I  I  W  I  L  L  Y  C  A  Y  S  K  A  R  W  R  T  H  I  H  T  F  G  Y  Q  R  V  K  *  A  V  V  L  *  L  G  I  C  F  F  C  F  S  I  R  R  N  R  N  S  *  H  F  F  R  *  Y  L  M  V  T  F  P  V  P  I  *  T  *  L  G  K  </first_frame>
            <second_frame>  P  L  I  F  F  I  F   : W  R  K  K  I  Q  L  E  Q  V  R  K  K  Y  C  G  *  H  L  K  N  Q  Q  N  *  L  S  L  D  Y  I  L  Q  Q  D  I  M  S  S  P  M  F  I  F  E  D  Y  E  F  *  *  Y  *  S  V  I  Q  D  H  A  Q  A  T  *  L  R  L  L  T  L  G  N  *  R  K  R  G  H  E  L  L  V  G  A  V  K  V  K  Y  S  L  Q  V  P  T  K  A  S  *  T  *  Y  N  N  D  Q  P  N  M  A  N  L  S  Q  K  Y  K  Q  N  Y  M  N  N  L  I  S  H  Q  P  N  P  G  G  T  S  G  S  S  S  L  T  S  S  G  F  F  S  I  V  P  I  A  K  P  G  G  A  P  T  S  T  L  S  G  I  K  G  S  S  E  Q  L  F  S  D  W  V  Y  V  S  F  A  F  P  S  E  G  T  G  I  P  D  T  S  F  G  D  T  L  W  S  L  F  P  F  R  F  E  L  N  W  A  K </second_frame>
            <third_frame>   L  *  Y  F  L  F  F  :  G  E  K  K  S  N  L  S  R  L  G  R  N  I  A  V  N  I  *  R  T  N  K  I  N  L  V  *  T  T  S  Y  N  K  T  S  C  H  L  Q  C  S  Y  L  K  T  M  S  F  D  S  T  N  L  L  S  K  I  M  H  K  R  H  S  *  G  F  *  P  W  E  I  E  E  R  E  V  M  S  C  *  S  V  Q  *  K  L  S  T  L  C  K  Y  Q  Q  K  L  L  E  L  D  T  I  M  T  N  Q  I  W  L  T  F  P  K  N  I  N  R  T  I  *  T  T  *  *  A  I  S  Q  I  L  E  A  L  Q  D  L  H  H  *  H  H  L  D  S  S  L  L  C  L  *  Q  S  Q  V  A  H  P  H  P  H  F  R  V  S  K  G  Q  V  S  S  C  S  L  T  G  Y  M  F  L  L  L  F  H  Q  K  E  Q  E  F  L  T  L  L  S  V  I  P  Y  G  H  F  S  R  S  D  L  N  L  I  G  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54515" stop="54180"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YNNDQPNMANLSQKYKQNYMNNLISHQPNPGGTSGSSSLTSSGFFSIVPIAKPGGAPTSTLSGIKGSSEQLFSDWVYVSFAFPSEGTGIPDTSFGDTLWSLFPFRFELNWAK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="54698" PGL_stop="56096"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54698" e_stop="55072"/>
            <exon e_start="55974" e_stop="56096"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.943" e_score="0.963"/>
          <exon-only e_score="0.886"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="54698" e_stop="55072" e_length="375"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.943">
            <gDNA_intron_boundary i_start="55073" i_stop="55973" i_length="901"/>
          </intron>
          <exon e_serial="2" e_score="0.886">
            <gDNA_exon_boundary e_start="55974" e_stop="56096" e_length="123"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54698" stop="55072"/>
              <exon start="55974" stop="56096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607941" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGAGATGACATGATGTCTTGTTGTAAGATGTAGTCTAAACTAAGTTAATTTTGTTGGTTCTTTAGATGTTAACCGCAATATTTCTTCCTAACCTGCTCAAGTTGGATTTTTTTTCTCCCTTCTGCTTTGTCTTTTAAATGTTTTTCTTTAGCTGAACTAGTTCCTAGATAACAAGCCTAAAGGTTTTCTTATTGATGAGATTGACAATGCTGATAGTGACAATCTTGATGCTAGTGATGATATCAATCGTGACCTTGATACGGAGCTGGAACTGCTAAGTAGGATGAATGGGTTTGTTTTTCCTAAATTTTTAGGAGTTGATGCTGTGGATTGGACAAAGGAAAATTAGTTGGTCATACCATTTGGCAAGAAG : GTATGCAGCACACACTAACTTCAGGTGCAAGAAGTGTTATTTATTGGTTTTATTAAGTTCCAAGCATGTCTCTTTTGGATTCAGAATTTAGATTTGTTTGCCTAAAGACTCTTGTAATATGAT</gDNA_template>
            <first_frame> L  E  M  T  *  C  L  V  V  R  C  S  L  N  *  V  N  F  V  G  S  L  D  V  N  R  N  I  S  S  *  P  A  Q  V  G  F  F  F  S  L  L  L  C  L  L  N  V  F  L  *  L  N  *  F  L  D  N  K  P  K  G  F  L  I  D  E  I  D  N  A  D  S  D  N  L  D  A  S  D  D  I  N  R  D  L  D  T  E  L  E  L  L  S  R  M  N  G  F  V  F  P  K  F  L  G  V  D  A  V  D  W  T  K  E  N  *  L  V  I  P  F  G  K  K  :  V  C  S  T  H  *  L  Q  V  Q  E  V  L  F  I  G  F  I  K  F  Q  A  C  L  F  W  I  Q  N  L  D  L  F  A  *  R  L  L  *  Y  D </first_frame>
            <second_frame>  W  R  *  H  D  V  L  L  *  D  V  V  *  T  K  L  I  L  L  V  L  *  M  L  T  A  I  F  L  P  N  L  L  K  L  D  F  F  S  P  F  C  F  V  F  *  M  F  F  F  S  *  T  S  S  *  I  T  S  L  K  V  F  L  L  M  R  L  T  M  L  I  V  T  I  L  M  L  V  M  I  S  I  V  T  L  I  R  S  W  N  C  *  V  G  *  M  G  L  F  F  L  N  F  *  E  L  M  L  W  I  G  Q  R  K  I  S  W  S  Y  H  L  A  R  R :   Y  A  A  H  T  N  F  R  C  K  K  C  Y  L  L  V  L  L  S  S  K  H  V  S  F  G  F  R  I  *  I  C  L  P  K  D  S  C  N  M   </second_frame>
            <third_frame>   G  D  D  M  M  S  C  C  K  M  *  S  K  L  S  *  F  C  W  F  F  R  C  *  P  Q  Y  F  F  L  T  C  S  S  W  I  F  F  L  P  S  A  L  S  F  K  C  F  S  L  A  E  L  V  P  R  *  Q  A  *  R  F  S  Y  *  *  D  *  Q  C  *  *  *  Q  S  *  C  *  *  *  Y  Q  S  *  P  *  Y  G  A  G  T  A  K  *  D  E  W  V  C  F  S  *  I  F  R  S  *  C  C  G  L  D  K  G  K  L  V  G  H  T  I  W  Q  E   : G  M  Q  H  T  L  T  S  G  A  R  S  V  I  Y  W  F  Y  *  V  P  S  M  S  L  L  D  S  E  F  R  F  V  C  L  K  T  L  V  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0190J03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="63158" PGL_stop="62412"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63158" e_stop="62412"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="63158" e_stop="62412" e_length="747"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63158" stop="62606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62958" stop="62412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62958" stop="62460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGATCTTATTGCGGATCAGGTACGTTGAGTGACCGCGATGTTAAAGGAAAAATAGTGTTGTGTATGATAGGAGGCGATTATTCGAGAATTGAAAAAGGACAAACTGTTGAGGATGCTGGAGGTGTTGGCATGATTCTAATAAACGGGGCTGAAGATGGTTTCACTACCTCAGCTACCGCTCACGTCCTTCCAGCAATGGATGTAACTTATGCAGACGGAATGAAAATCATTGAGTATATGAATTCAACAAAGAAACCTGTTGCTCAGATTACATTCCAAGGCACTATACTCGGTGATCAAAATGCTCCGGTTGTTGCTGCATTTTCTTCCAGAGGGCCAAGCATAGCTAGTCGCGGAATCTTAAAGCCTGATATTATCGGTCCTGGTGTAAACATTCTTGCTGCTTGGCCTACCTCCATGGAGAATAACACCAACACAAAATCTACTTTCAACATTATTTCGGGAACTTCCATGTCTTGTCCTCACCTCAGTGGCGTGGCAGCATTGCTAAAAAGCGCTCATCCCACTTGGTCTCCTGCAGCTATCAAATCAGCAATCATGACAACCGCTGATACAACCAATCTTGCCAACGGTCCCATATTAGATGAGACACTTCTTCCTGCTAGCATCTTCGCGGTTGGTGCAGGACATGTCAATCCAGAAAGAGCAAATGATCCAGGATTAATTTATGATACCCCAGTCAAGGACTATGTACCTTATTTATGCGGTTTGAATTACACAAATC</gDNA_template>
            <first_frame> A  D  L  I  A  D  Q  V  R  *  V  T  A  M  L  K  E  K  *  C  C  V  *  *  E  A  I  I  R  E  L  K  K  D  K  L  L  R  M  L  E  V  L  A  *  F  *  *  T  G  L  K  M  V  S  L  P  Q  L  P  L  T  S  F  Q  Q  W  M  *  L  M  Q  T  E  *  K  S  L  S  I  *  I  Q  Q  R  N  L  L  L  R  L  H  S  K  A  L  Y  S  V  I  K  M  L  R  L  L  L  H  F  L  P  E  G  Q  A  *  L  V  A  E  S  *  S  L  I  L  S  V  L  V  *  T  F  L  L  L  G  L  P  P  W  R  I  T  P  T  Q  N  L  L  S  T  L  F  R  E  L  P  C  L  V  L  T  S  V  A  W  Q  H  C  *  K  A  L  I  P  L  G  L  L  Q  L  S  N  Q  Q  S  *  Q  P  L  I  Q  P  I  L  P  T  V  P  Y  *  M  R  H  F  F  L  L  A  S  S  R  L  V  Q  D  M  S  I  Q  K  E  Q  M  I  Q  D  *  F  M  I  P  Q  S  R  T  M  Y  L  I  Y  A  V  *  I  T  Q  I </first_frame>
            <second_frame>  Q  I  L  L  R  I  R  Y  V  E  *  P  R  C  *  R  K  N  S  V  V  Y  D  R  R  R  L  F  E  N  *  K  R  T  N  C  *  G  C  W  R  C  W  H  D  S  N  K  R  G  *  R  W  F  H  Y  L  S  Y  R  S  R  P  S  S  N  G  C  N  L  C  R  R  N  E  N  H  *  V  Y  E  F  N  K  E  T  C  C  S  D  Y  I  P  R  H  Y  T  R  *  S  K  C  S  G  C  C  C  I  F  F  Q  R  A  K  H  S  *  S  R  N  L  K  A  *  Y  Y  R  S  W  C  K  H  S  C  C  L  A  Y  L  H  G  E  *  H  Q  H  K  I  Y  F  Q  H  Y  F  G  N  F  H  V  L  S  S  P  Q  W  R  G  S  I  A  K  K  R  S  S  H  L  V  S  C  S  Y  Q  I  S  N  H  D  N  R  *  Y  N  Q  S  C  Q  R  S  H  I  R  *  D  T  S  S  C  *  H  L  R  G  W  C  R  T  C  Q  S  R  K  S  K  *  S  R  I  N  L  *  Y  P  S  Q  G  L  C  T  L  F  M  R  F  E  L  H  K   </second_frame>
            <third_frame>   R  S  Y  C  G  S  G  T  L  S  D  R  D  V  K  G  K  I  V  L  C  M  I  G  G  D  Y  S  R  I  E  K  G  Q  T  V  E  D  A  G  G  V  G  M  I  L  I  N  G  A  E  D  G  F  T  T  S  A  T  A  H  V  L  P  A  M  D  V  T  Y  A  D  G  M  K  I  I  E  Y  M  N  S  T  K  K  P  V  A  Q  I  T  F  Q  G  T  I  L  G  D  Q  N  A  P  V  V  A  A  F  S  S  R  G  P  S  I  A  S  R  G  I  L  K  P  D  I  I  G  P  G  V  N  I  L  A  A  W  P  T  S  M  E  N  N  T  N  T  K  S  T  F  N  I  I  S  G  T  S  M  S  C  P  H  L  S  G  V  A  A  L  L  K  S  A  H  P  T  W  S  P  A  A  I  K  S  A  I  M  T  T  A  D  T  T  N  L  A  N  G  P  I  L  D  E  T  L  L  P  A  S  I  F  A  V  G  A  G  H  V  N  P  E  R  A  N  D  P  G  L  I  Y  D  T  P  V  K  D  Y  V  P  Y  L  C  G  L  N  Y  T  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63156" stop="62413"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSYCGSGTLSDRDVKGKIVLCMIGGDYSRIEKGQTVEDAGGVGMILINGAEDGFTTSATAHVLPAMDVTYADGMKIIEYMNSTKKPVAQITFQGTILGDQNAPVVAAFSSRGPSIASRGILKPDIIGPGVNILAAWPTSMENNTNTKSTFNIISGTSMSCPHLSGVAALLKSAHPTWSPAAIKSAIMTTADTTNLANGPILDETLLPASIFAVGAGHVNPERANDPGLIYDTPVKDYVPYLCGLNYTN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="63595" PGL_stop="63396"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63595" e_stop="63396"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="63595" e_stop="63396" e_length="200"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63595" stop="63396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340856" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACTGCTGTTGGTGTTGCCCCTCTTGCTCACTTGGCTATTTATAAGGCCTGTGACTCTTTTGGTTGCATTGTCAGTAATGTTTTAGCTGCTATGGATGCAGCTATTGATGATGGCGTGGATATCATATCCCTTTCCCTTGGTGGATATACTAGTCCCTTCCACAGTGATTCTATTGCTCTCGGTGCATATAGCGCAACTG</gDNA_template>
            <first_frame> H  C  C  W  C  C  P  S  C  S  L  G  Y  L  *  G  L  *  L  F  W  L  H  C  Q  *  C  F  S  C  Y  G  C  S  Y  *  *  W  R  G  Y  H  I  P  F  P  W  W  I  Y  *  S  L  P  Q  *  F  Y  C  S  R  C  I  *  R  N   </first_frame>
            <second_frame>  T  A  V  G  V  A  P  L  A  H  L  A  I  Y  K  A  C  D  S  F  G  C  I  V  S  N  V  L  A  A  M  D  A  A  I  D  D  G  V  D  I  I  S  L  S  L  G  G  Y  T  S  P  F  H  S  D  S  I  A  L  G  A  Y  S  A  T  </second_frame>
            <third_frame>   L  L  L  V  L  P  L  L  L  T  W  L  F  I  R  P  V  T  L  L  V  A  L  S  V  M  F  *  L  L  W  M  Q  L  L  M  M  A  W  I  S  Y  P  F  P  L  V  D  I  L  V  P  S  T  V  I  L  L  L  S  V  H  I  A  Q  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63594" stop="63397"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TAVGVAPLAHLAIYKACDSFGCIVSNVLAAMDAAIDDGVDIISLSLGGYTSPFHSDSIALGAYSAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="76152" PGL_stop="75599"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76152" e_stop="75599"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="76152" e_stop="75599" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76152" stop="75599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246224" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCGGTGCAGGACATGTCAATCCATCGAGAGCTAATGATCCAGGACTAATCTACGACACCGAATTTAAGGACTACCTGCCTTACCTCTGCGGTTTGAATTACACAAATCGACAGGTTGGAAATCTCCTGCAACGCAAAGTGGAGTGTAAGGAAGTGAAACACATTCCTGAAGCACAACTAAATTATCCTTCATTCTCCATCGCACTCGGAGAAATTTCTCAGACTTATACGAGAACAGTGACTAACGTCGGGGAAGCTAAATCATCTTACAGTGTGGAAATAGCTTCCCCACCCGGAGTCTCTGTGATTGTTAAGCCCTCTACTCTAGAATTCTCCCAGTTGGACCAGAAGTTGAAATACCAAGTGACATTTACGAAAAGAAATAATAGCCCAAACAGTGGCATTGCTCAAGGATTCTTGAAATGGAGTAGTAAGAATTACTCAGTAAGAAGCCCAATTGCAGTTGTGCTACCGCCTACAATTGGTTTCTAGTTTTATTTTCTTCTCATTTTAATAATTGGAACAATATATAACAAGAGTGGTTCCAAAAGAAA</gDNA_template>
            <first_frame> I  G  A  G  H  V  N  P  S  R  A  N  D  P  G  L  I  Y  D  T  E  F  K  D  Y  L  P  Y  L  C  G  L  N  Y  T  N  R  Q  V  G  N  L  L  Q  R  K  V  E  C  K  E  V  K  H  I  P  E  A  Q  L  N  Y  P  S  F  S  I  A  L  G  E  I  S  Q  T  Y  T  R  T  V  T  N  V  G  E  A  K  S  S  Y  S  V  E  I  A  S  P  P  G  V  S  V  I  V  K  P  S  T  L  E  F  S  Q  L  D  Q  K  L  K  Y  Q  V  T  F  T  K  R  N  N  S  P  N  S  G  I  A  Q  G  F  L  K  W  S  S  K  N  Y  S  V  R  S  P  I  A  V  V  L  P  P  T  I  G  F  *  F  Y  F  L  L  I  L  I  I  G  T  I  Y  N  K  S  G  S  K  R   </first_frame>
            <second_frame>  S  V  Q  D  M  S  I  H  R  E  L  M  I  Q  D  *  S  T  T  P  N  L  R  T  T  C  L  T  S  A  V  *  I  T  Q  I  D  R  L  E  I  S  C  N  A  K  W  S  V  R  K  *  N  T  F  L  K  H  N  *  I  I  L  H  S  P  S  H  S  E  K  F  L  R  L  I  R  E  Q  *  L  T  S  G  K  L  N  H  L  T  V  W  K  *  L  P  H  P  E  S  L  *  L  L  S  P  L  L  *  N  S  P  S  W  T  R  S  *  N  T  K  *  H  L  R  K  E  I  I  A  Q  T  V  A  L  L  K  D  S  *  N  G  V  V  R  I  T  Q  *  E  A  Q  L  Q  L  C  Y  R  L  Q  L  V  S  S  F  I  F  F  S  F  *  *  L  E  Q  Y  I  T  R  V  V  P  K  E  </second_frame>
            <third_frame>   R  C  R  T  C  Q  S  I  E  S  *  *  S  R  T  N  L  R  H  R  I  *  G  L  P  A  L  P  L  R  F  E  L  H  K  S  T  G  W  K  S  P  A  T  Q  S  G  V  *  G  S  E  T  H  S  *  S  T  T  K  L  S  F  I  L  H  R  T  R  R  N  F  S  D  L  Y  E  N  S  D  *  R  R  G  S  *  I  I  L  Q  C  G  N  S  F  P  T  R  S  L  C  D  C  *  A  L  Y  S  R  I  L  P  V  G  P  E  V  E  I  P  S  D  I  Y  E  K  K  *  *  P  K  Q  W  H  C  S  R  I  L  E  M  E  *  *  E  L  L  S  K  K  P  N  C  S  C  A  T  A  Y  N  W  F  L  V  L  F  S  S  H  F  N  N  W  N  N  I  *  Q  E  W  F  Q  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76152" stop="75661"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGAGHVNPSRANDPGLIYDTEFKDYLPYLCGLNYTNRQVGNLLQRKVECKEVKHIPEAQLNYPSFSIALGEISQTYTRTVTNVGEAKSSYSVEIASPPGVSVIVKPSTLEFSQLDQKLKYQVTFTKRNNSPNSGIAQGFLKWSSKNYSVRSPIAVVLPPTIGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="80869" PGL_stop="80154"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80869" e_stop="80154"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="80869" e_stop="80154" e_length="716"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80869" stop="80154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213039" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAGAACGTTGGCTTGTGGAGGGATGACAACTATGGAGAAGGTGTGATCATTGGAGTCTTCTACACAGGGGTTACCCCTGATCATCCTTCATTCAGTGACGAAGGAATGCCTCCTCCACCTGCTAAATGGAAGGGAAAGTGTGATTCAAATTTCACTGGAAAGTGTAGCAACAAGCTCATTGGTGCAAAGACTTACCCACTAAAAAGTGAGTCACCAAAAGATGAGGCTGGACATGGCACACACACCTCGAGCACAGCTGCAGGAAGTTTTGTGAAAGGTGCCAATGTGTATGGGAACGCTAAAGGCACTGCGGTTGGGATTGCCCCTCTTGCTCACTTGGCCATGTATAAGGTCAGTCCATTATTTGGTTGCCCCGATGCTGAAATTTTAGCTGGCATGGATGAAGCTATTGATGATGGAGTAGATATCATGTCCCTTTCACTTGGTGGATCTAGCAGGCCATTCTATAATGATGTGATTGCACTCGGGGCGTACAGTGCAGCAAAAAGAGGTATTCTTGTAAGTTGCTCTGCGGGTAATGGTGGTCCATCCCATAGCACTTATCAAACGAAGCTCCGTGGTTTCTGACAGTAGGTGCAAGCACTATTGACAGGGAACTTAAGGTCACTGTTATGCTCGGAAACCAAAAACTATTTGAGGGTGAATCAGCATTTAGTCCTAAGGTTCCGGATTCCTCATTTTACCCTTTGATTGA</gDNA_template>
            <first_frame> T  E  R  W  L  V  E  G  *  Q  L  W  R  R  C  D  H  W  S  L  L  H  R  G  Y  P  *  S  S  F  I  Q  *  R  R  N  A  S  S  T  C  *  M  E  G  K  V  *  F  K  F  H  W  K  V  *  Q  Q  A  H  W  C  K  D  L  P  T  K  K  *  V  T  K  R  *  G  W  T  W  H  T  H  L  E  H  S  C  R  K  F  C  E  R  C  Q  C  V  W  E  R  *  R  H  C  G  W  D  C  P  S  C  S  L  G  H  V  *  G  Q  S  I  I  W  L  P  R  C  *  N  F  S  W  H  G  *  S  Y  *  *  W  S  R  Y  H  V  P  F  T  W  W  I  *  Q  A  I  L  *  *  C  D  C  T  R  G  V  Q  C  S  K  K  R  Y  S  C  K  L  L  C  G  *  W  W  S  I  P  *  H  L  S  N  E  A  P  W  F  L  T  V  G  A  S  T  I  D  R  E  L  K  V  T  V  M  L  G  N  Q  K  L  F  E  G  E  S  A  F  S  P  K  V  P  D  S  S  F  Y  P  L  I   </first_frame>
            <second_frame>  Q  N  V  G  L  W  R  D  D  N  Y  G  E  G  V  I  I  G  V  F  Y  T  G  V  T  P  D  H  P  S  F  S  D  E  G  M  P  P  P  P  A  K  W  K  G  K  C  D  S  N  F  T  G  K  C  S  N  K  L  I  G  A  K  T  Y  P  L  K  S  E  S  P  K  D  E  A  G  H  G  T  H  T  S  S  T  A  A  G  S  F  V  K  G  A  N  V  Y  G  N  A  K  G  T  A  V  G  I  A  P  L  A  H  L  A  M  Y  K  V  S  P  L  F  G  C  P  D  A  E  I  L  A  G  M  D  E  A  I  D  D  G  V  D  I  M  S  L  S  L  G  G  S  S  R  P  F  Y  N  D  V  I  A  L  G  A  Y  S  A  A  K  R  G  I  L  V  S  C  S  A  G  N  G  G  P  S  H  S  T  Y  Q  T  K  L  R  G  F  *  Q  *  V  Q  A  L  L  T  G  N  L  R  S  L  L  C  S  E  T  K  N  Y  L  R  V  N  Q  H  L  V  L  R  F  R  I  P  H  F  T  L  *  L  </second_frame>
            <third_frame>   R  T  L  A  C  G  G  M  T  T  M  E  K  V  *  S  L  E  S  S  T  Q  G  L  P  L  I  I  L  H  S  V  T  K  E  C  L  L  H  L  L  N  G  R  E  S  V  I  Q  I  S  L  E  S  V  A  T  S  S  L  V  Q  R  L  T  H  *  K  V  S  H  Q  K  M  R  L  D  M  A  H  T  P  R  A  Q  L  Q  E  V  L  *  K  V  P  M  C  M  G  T  L  K  A  L  R  L  G  L  P  L  L  L  T  W  P  C  I  R  S  V  H  Y  L  V  A  P  M  L  K  F  *  L  A  W  M  K  L  L  M  M  E  *  I  S  C  P  F  H  L  V  D  L  A  G  H  S  I  M  M  *  L  H  S  G  R  T  V  Q  Q  K  E  V  F  L  *  V  A  L  R  V  M  V  V  H  P  I  A  L  I  K  R  S  S  V  V  S  D  S  R  C  K  H  Y  *  Q  G  T  *  G  H  C  Y  A  R  K  P  K  T  I  *  G  *  I  S  I  *  S  *  G  S  G  F  L  I  L  P  F  D  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80868" stop="80281"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNVGLWRDDNYGEGVIIGVFYTGVTPDHPSFSDEGMPPPPAKWKGKCDSNFTGKCSNKLIGAKTYPLKSESPKDEAGHGTHTSSTAAGSFVKGANVYGNAKGTAVGIAPLAHLAMYKVSPLFGCPDAEILAGMDEAIDDGVDIMSLSLGGSSRPFYNDVIALGAYSAAKRGILVSCSAGNGGPSHSTYQTKLRGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="81352" PGL_stop="82654"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81352" e_stop="81383"/>
            <exon e_start="81618" e_stop="81996"/>
            <exon e_start="82324" e_stop="82654"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.719"/>
          <exon-intron don_prob="0.044" acc_prob="0.000" e_score="0.847"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.719">
            <gDNA_exon_boundary e_start="81352" e_stop="81383" e_length="32"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81384" i_stop="81617" i_length="234"/>
          </intron>
          <exon e_serial="2" e_score="0.847">
            <gDNA_exon_boundary e_start="81618" e_stop="81996" e_length="379"/>
          </exon>
          <intron i_serial="2" don_prob="0.044" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81997" i_stop="82323" i_length="327"/>
          </intron>
          <exon e_serial="3" e_score="0.973">
            <gDNA_exon_boundary e_start="82324" e_stop="82654" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81352" stop="81383"/>
              <exon start="81618" stop="81996"/>
              <exon start="82324" stop="82653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378105" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81925" stop="81996"/>
              <exon start="82324" stop="82654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390802" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTATTTTGGTTGTTATTTGAGTTTTTTTTT : TCCACTATAAAAATATATCAGTACTTCTTGGAGTTTACTCAACCATCGCGAGTTATAATTCTAATTTGATTTTCTGTACTTAAGTCTTACAAAATGAGTAGTAGTTGAGTCCCAAACATATTAACTAATCGAGTTTGTCAACTTACAAAAGAGGCTTGCACTGTAGCACTGGAAACATGAAATAGTATCAGCGGTACACTGATTGTAATCGCCCTTCTTTGATAGTCACATCTCAAAGACTTGCCTATAACAACAGACCTGAAAATTCACTGTGGACGACAAAATAGCTTTAGTGGAAAGATTTTTTAAAAAAAGGAACTCGGGAACACATGTAAAAATAGCAGCAGCACCTTAGAAACACTTCCTACGGACAATTGAT : TAAACATGGTGGCAATTGAGACGTGAATTAAAACACGGCAAGAGCATAAACCAATAAGCAATGAGAAATATAGAATTATATAACATGTGACAATGGAAGTTGCACTTATTTCCTAAAAACTTGTGATCGTTATCCTATAAAAAATTTAGATTCTCTATGGAGGTTAAATATAATGCTATGTGTTTGATGATGAGCTAGCACGGCATGATTAAAAATGAAAAGAAGTAACAAAAAAGCAAAGTGAAATAAAAAGCTTATGAGGGAAAAGAATAGCTTACATCAGTTGGGGAGTCATTCGTTTTAATCATTACATGCATTTCCAATCGATCTG</gDNA_template>
            <first_frame> L  Y  F  G  C  Y  L  S  F  F  F :   P  L  *  K  Y  I  S  T  S  W  S  L  L  N  H  R  E  L  *  F  *  F  D  F  L  Y  L  S  L  T  K  *  V  V  V  E  S  Q  T  Y  *  L  I  E  F  V  N  L  Q  K  R  L  A  L  *  H  W  K  H  E  I  V  S  A  V  H  *  L  *  S  P  F  F  D  S  H  I  S  K  T  C  L  *  Q  Q  T  *  K  F  T  V  D  D  K  I  A  L  V  E  R  F  F  K  K  R  N  S  G  T  H  V  K  I  A  A  A  P  *  K  H  F  L  R  T  I  D  :  *  T  W  W  Q  L  R  R  E  L  K  H  G  K  S  I  N  Q  *  A  M  R  N  I  E  L  Y  N  M  *  Q  W  K  L  H  L  F  P  K  N  L  *  S  L  S  Y  K  K  F  R  F  S  M  E  V  K  Y  N  A  M  C  L  M  M  S  *  H  G  M  I  K  N  E  K  K  *  Q  K  S  K  V  K  *  K  A  Y  E  G  K  E  *  L  T  S  V  G  E  S  F  V  L  I  I  T  C  I  S  N  R  S  </first_frame>
            <second_frame>  F  I  L  V  V  I  *  V  F  F   : F  H  Y  K  N  I  S  V  L  L  G  V  Y  S  T  I  A  S  Y  N  S  N  L  I  F  C  T  *  V  L  Q  N  E  *  *  L  S  P  K  H  I  N  *  S  S  L  S  T  Y  K  R  G  L  H  C  S  T  G  N  M  K  *  Y  Q  R  Y  T  D  C  N  R  P  S  L  I  V  T  S  Q  R  L  A  Y  N  N  R  P  E  N  S  L  W  T  T  K  *  L  *  W  K  D  F  L  K  K  G  T  R  E  H  M  *  K  *  Q  Q  H  L  R  N  T  S  Y  G  Q  L  I :   K  H  G  G  N  *  D  V  N  *  N  T  A  R  A  *  T  N  K  Q  *  E  I  *  N  Y  I  T  C  D  N  G  S  C  T  Y  F  L  K  T  C  D  R  Y  P  I  K  N  L  D  S  L  W  R  L  N  I  M  L  C  V  *  *  *  A  S  T  A  *  L  K  M  K  R  S  N  K  K  A  K  *  N  K  K  L  M  R  E  K  N  S  L  H  Q  L  G  S  H  S  F  *  S  L  H  A  F  P  I  D  L </second_frame>
            <third_frame>   L  F  W  L  L  F  E  F  F  F  :  S  T  I  K  I  Y  Q  Y  F  L  E  F  T  Q  P  S  R  V  I  I  L  I  *  F  S  V  L  K  S  Y  K  M  S  S  S  *  V  P  N  I  L  T  N  R  V  C  Q  L  T  K  E  A  C  T  V  A  L  E  T  *  N  S  I  S  G  T  L  I  V  I  A  L  L  *  *  S  H  L  K  D  L  P  I  T  T  D  L  K  I  H  C  G  R  Q  N  S  F  S  G  K  I  F  *  K  K  E  L  G  N  T  C  K  N  S  S  S  T  L  E  T  L  P  T  D  N  *   : L  N  M  V  A  I  E  T  *  I  K  T  R  Q  E  H  K  P  I  S  N  E  K  Y  R  I  I  *  H  V  T  M  E  V  A  L  I  S  *  K  L  V  I  V  I  L  *  K  I  *  I  L  Y  G  G  *  I  *  C  Y  V  F  D  D  E  L  A  R  H  D  *  K  *  K  E  V  T  K  K  Q  S  E  I  K  S  L  *  G  K  R  I  A  Y  I  S  W  G  V  I  R  F  N  H  Y  M  H  F  Q  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0190J03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="81886" e_stop="81996"/>
            <exon e_start="82323" e_stop="82653"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.044" acc_prob="0.000" e_score="0.838"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.838">
            <gDNA_exon_boundary e_start="81886" e_stop="81996" e_length="111"/>
          </exon>
          <intron i_serial="1" don_prob="0.044" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81997" i_stop="82322" i_length="326"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="82323" e_stop="82653" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81886" stop="81996"/>
              <exon start="82323" stop="82653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236523" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGTGGACGACAAAATAGCTTTAGTGGAAAGATTTTTTAAAAAAAGGAACTCGGGAACACATGTAAAAATAGCAGCAGCACCTTAGAAACACTTCCTACGGACAATTGAT : TTAAACATGGTGGCAATTGAGACGTGAATTAAAACACGGCAAGAGCATAAACCAATAAGCAATGAGAAATATAGAATTATATAACATGTGACAATGGAAGTTGCACTTATTTCCTAAAAACTTGTGATCGTTATCCTATAAAAAATTTAGATTCTCTATGGAGGTTAAATATAATGCTATGTGTTTGATGATGAGCTAGCACGGCATGATTAAAAATGAAAAGAAGTAACAAAAAAGCAAAGTGAAATAAAAAGCTTATGAGGGAAAAGAATAGCTTACATCAGTTGGGGAGTCATTCGTTTTAATCATTACATGCATTTCCAATCGATCT</gDNA_template>
            <first_frame> T  V  D  D  K  I  A  L  V  E  R  F  F  K  K  R  N  S  G  T  H  V  K  I  A  A  A  P  *  K  H  F  L  R  T  I  D  :  L  N  M  V  A  I  E  T  *  I  K  T  R  Q  E  H  K  P  I  S  N  E  K  Y  R  I  I  *  H  V  T  M  E  V  A  L  I  S  *  K  L  V  I  V  I  L  *  K  I  *  I  L  Y  G  G  *  I  *  C  Y  V  F  D  D  E  L  A  R  H  D  *  K  *  K  E  V  T  K  K  Q  S  E  I  K  S  L  *  G  K  R  I  A  Y  I  S  W  G  V  I  R  F  N  H  Y  M  H  F  Q  S  I  </first_frame>
            <second_frame>  L  W  T  T  K  *  L  *  W  K  D  F  L  K  K  G  T  R  E  H  M  *  K  *  Q  Q  H  L  R  N  T  S  Y  G  Q  L  I :   *  T  W  W  Q  L  R  R  E  L  K  H  G  K  S  I  N  Q  *  A  M  R  N  I  E  L  Y  N  M  *  Q  W  K  L  H  L  F  P  K  N  L  *  S  L  S  Y  K  K  F  R  F  S  M  E  V  K  Y  N  A  M  C  L  M  M  S  *  H  G  M  I  K  N  E  K  K  *  Q  K  S  K  V  K  *  K  A  Y  E  G  K  E  *  L  T  S  V  G  E  S  F  V  L  I  I  T  C  I  S  N  R  S </second_frame>
            <third_frame>   C  G  R  Q  N  S  F  S  G  K  I  F  *  K  K  E  L  G  N  T  C  K  N  S  S  S  T  L  E  T  L  P  T  D  N  *   : F  K  H  G  G  N  *  D  V  N  *  N  T  A  R  A  *  T  N  K  Q  *  E  I  *  N  Y  I  T  C  D  N  G  S  C  T  Y  F  L  K  T  C  D  R  Y  P  I  K  N  L  D  S  L  W  R  L  N  I  M  L  C  V  *  *  *  A  S  T  A  *  L  K  M  K  R  S  N  K  K  A  K  *  N  K  K  L  M  R  E  K  N  S  L  H  Q  L  G  S  H  S  F  *  S  L  H  A  F  P  I  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0190J03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="84579" PGL_stop="81642"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84579" e_stop="82602"/>
            <exon e_start="82034" e_stop="81968"/>
            <exon e_start="81886" e_stop="81642"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.997"/>
          <exon-intron don_prob="0.000" acc_prob="0.253" e_score="0.985"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="84579" e_stop="82602" e_length="1978"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="82601" i_stop="82035" i_length="567"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="82034" e_stop="81968" e_length="67"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.253">
            <gDNA_intron_boundary i_start="81967" i_stop="81887" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="81886" e_stop="81642" e_length="245"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84579" stop="83732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84262" stop="83381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84170" stop="82602"/>
              <exon start="82034" stop="81968"/>
              <exon start="81886" stop="81642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747665" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAATATTTGGGTGAAGCACAAAACTTGTATGGATCTCTATCAGTTGTAAATTTGGAAAATGTGGTTGATAGAAGGGAAGCTGTGAAGGCAAAGATGAGGGAGAAGAATCACGTTGACAAGTTATCTTTGGAGTGGAGTGAAAGCATTAGTGCTGACAATTCACAAACAGAAATAGACATACTTGATGAGCTACGCCCACATAAAAACATTAAAGAAGTCGAAATCAGTGGATACAGAGGGACAAACTTCCCCAATTGGGTAGCTGATCCTTTGTTTGTTAAGCTAGTGAAATTGTCTCTTAGAAACTGCAACAACTGTTATTCGTTGCCAGCACTAGGACAACTCCCTTGTTTGAAATTCCTTTCCGTTAAAGGGATGCATGGAATCACAGAGGCGATGGAAGAATTCTATGGCAGATTGTCCTCCAAAAAGCCTTTTAACTGTCTTGAGAAGCTTGAATTTGAAGATATGACGGGGTGGAAGCAATGGCACGCACTAGGAATTGGAGAGTTCCCTACACTTGAGAACCTTTCCATTAAAAATTGCCCTGAGCTCAGTTTGAAGATACCCATCCAATTTTCAAGTTTAAAAAGGTTACAAGTTAGAGGTTGTCCAGTTGTTTTTGATGATGCTCAACTGTTTAGATCCCAACTTGAAGCAATGAAGCAGATTGAAGCATTATATATACGTGATTGTAACTCTATTACCTCCTTTCCTTTTAGCATACTGCCAACTACCTTGAAGACAATAGAGATATCTGGTTGCCCAAAATTGAAATTCGAGGCGCCAGTTGGTGAGATGTTTGTGGAGTATTTGAGTGTGATTGATTGTGGTTGTGTAGATGATAATATCATTAGAGTTTCTCCCAGCAGCGTGTAAATTGAGTATTATGAGTTGCCACAACTTTACTAGGTTTTTGATTCCTACTGCAACTGAAACTCTCACTATTTCGAATTGTGAGAATGTTGAAAAACTATCGGTGGCATGTGGAGGAGCGGCCCAGATGACGTTACTGCATATTTTGAAGTGTAAGAAGCTCAAGTGTCTGCCAGAACGTATGCAGGAACTCCTTCCATCTCTCAAGGATTTGTATCTTTCCAATTGTCCAGAAATAGAAGGAGAATTGCCCTTCAATTTACATAAACTCCGTATCAGTGATTGCAAGAAACTGGTGAATGGCCGAAAGGAGTGGCATTTACAGAGACTCACAGAGTTAGTGATCCATCATGATGGGAGTGACGAAGATATTGAACATTGGGAGTTGCCTTGTTCTATTACAGAACTTGAGGTATACAATATGATAACATTAAGCAGCCAACATCTCAAAAGCCTCACCTCTCTTCAATGTCTAAGTATTGGTGGTAATTTATCTCAGATTGGCCGTCTTTCCTCCTTTTCTCACCTCACTTCGCTTCAAACTCTACAAATCAGGAATTTCGGTAATCTCCAATCACTTGCTGAATCAGCACTGCCATCCTCCCTCTCTCACCTGACCATCTCCCGTTGCCCGAATCTCCAATCACTTGCTGAATCAGCACTGCCCTCCTCCCTCTCTCACCTGAACATCTATGATTGCCCGAATCTCCAATTACTACCTGAATCAGCACTGCCCTCCTCCCTCTCTCACCTGGACATCTCCCATTGTCCTAATCTCCAATCACTACCTGAATCAGCACTGCTCTCCTCCCTCTCTCACCTGGACATCTCCCACTGTCCTAATCTCCAATCACTTGCTGAATCAGCACTGCCCTCCTCCCTCTCTCACCTGACCATCTCCCATTGCCCTAATCTCCATTCACTTTCAGAAAAAGGGATGCCCTCTTCCCTCTCTAAACTATCTATTTCCAAATGTTCATTGCTCACACCACTACTAGAATTTAACAAGGGGGAATACTGGACAAATATTGCTCATATCTCCACCATACAGATCGATTGGAAATGCATGTAATGATTAAAACGAATGACTCCCCAACTGAT : ATGTGGATTTAGAAGAGCGAGTACGACAAGTCTGGTACATCAATTGTCCGTAGGAAGTGTTTCTAAG : TGAATTTTCAGGTCTGTTGTTATAGGCAAGTCTTTGAGATGTGACTATCAAAGAAGGGCGATTACAATCAGTGTACCGCTGATACTATTTCATGTTTCCAGTGCTACAGTGCAAGCCTCTTTTGTAAGTTGACAAACTCGATTAGTTAATATGTTTGGGACTCAACTACTACTCATTTTGTAAGACTTAAGTACAGAAAATCAAATTAGAATTATAACTCGCGATGGTTGAGTAAACTCCAAGAA</gDNA_template>
            <first_frame> G  I  F  G  *  S  T  K  L  V  W  I  S  I  S  C  K  F  G  K  C  G  *  *  K  G  S  C  E  G  K  D  E  G  E  E  S  R  *  Q  V  I  F  G  V  E  *  K  H  *  C  *  Q  F  T  N  R  N  R  H  T  *  *  A  T  P  T  *  K  H  *  R  S  R  N  Q  W  I  Q  R  D  K  L  P  Q  L  G  S  *  S  F  V  C  *  A  S  E  I  V  S  *  K  L  Q  Q  L  L  F  V  A  S  T  R  T  T  P  L  F  E  I  P  F  R  *  R  D  A  W  N  H  R  G  D  G  R  I  L  W  Q  I  V  L  Q  K  A  F  *  L  S  *  E  A  *  I  *  R  Y  D  G  V  E  A  M  A  R  T  R  N  W  R  V  P  Y  T  *  E  P  F  H  *  K  L  P  *  A  Q  F  E  D  T  H  P  I  F  K  F  K  K  V  T  S  *  R  L  S  S  C  F  *  *  C  S  T  V  *  I  P  T  *  S  N  E  A  D  *  S  I  I  Y  T  *  L  *  L  Y  Y  L  L  S  F  *  H  T  A  N  Y  L  E  D  N  R  D  I  W  L  P  K  I  E  I  R  G  A  S  W  *  D  V  C  G  V  F  E  C  D  *  L  W  L  C  R  *  *  Y  H  *  S  F  S  Q  Q  R  V  N  *  V  L  *  V  A  T  T  L  L  G  F  *  F  L  L  Q  L  K  L  S  L  F  R  I  V  R  M  L  K  N  Y  R  W  H  V  E  E  R  P  R  *  R  Y  C  I  F  *  S  V  R  S  S  S  V  C  Q  N  V  C  R  N  S  F  H  L  S  R  I  C  I  F  P  I  V  Q  K  *  K  E  N  C  P  S  I  Y  I  N  S  V  S  V  I  A  R  N  W  *  M  A  E  R  S  G  I  Y  R  D  S  Q  S  *  *  S  I  M  M  G  V  T  K  I  L  N  I  G  S  C  L  V  L  L  Q  N  L  R  Y  T  I  *  *  H  *  A  A  N  I  S  K  A  S  P  L  F  N  V  *  V  L  V  V  I  Y  L  R  L  A  V  F  P  P  F  L  T  S  L  R  F  K  L  Y  K  S  G  I  S  V  I  S  N  H  L  L  N  Q  H  C  H  P  P  S  L  T  *  P  S  P  V  A  R  I  S  N  H  L  L  N  Q  H  C  P  P  P  S  L  T  *  T  S  M  I  A  R  I  S  N  Y  Y  L  N  Q  H  C  P  P  P  S  L  T  W  T  S  P  I  V  L  I  S  N  H  Y  L  N  Q  H  C  S  P  P  S  L  T  W  T  S  P  T  V  L  I  S  N  H  L  L  N  Q  H  C  P  P  P  S  L  T  *  P  S  P  I  A  L  I  S  I  H  F  Q  K  K  G  C  P  L  P  S  L  N  Y  L  F  P  N  V  H  C  S  H  H  Y  *  N  L  T  R  G  N  T  G  Q  I  L  L  I  S  P  P  Y  R  S  I  G  N  A  C  N  D  *  N  E  *  L  P  N  *   : Y  V  D  L  E  E  R  V  R  Q  V  W  Y  I  N  C  P  *  E  V  F  L  S :   E  F  S  G  L  L  L  *  A  S  L  *  D  V  T  I  K  E  G  R  L  Q  S  V  Y  R  *  Y  Y  F  M  F  P  V  L  Q  C  K  P  L  L  *  V  D  K  L  D  *  L  I  C  L  G  L  N  Y  Y  S  F  C  K  T  *  V  Q  K  I  K  L  E  L  *  L  A  M  V  E  *  T  P  R  </first_frame>
            <second_frame>  E  Y  L  G  E  A  Q  N  L  Y  G  S  L  S  V  V  N  L  E  N  V  V  D  R  R  E  A  V  K  A  K  M  R  E  K  N  H  V  D  K  L  S  L  E  W  S  E  S  I  S  A  D  N  S  Q  T  E  I  D  I  L  D  E  L  R  P  H  K  N  I  K  E  V  E  I  S  G  Y  R  G  T  N  F  P  N  W  V  A  D  P  L  F  V  K  L  V  K  L  S  L  R  N  C  N  N  C  Y  S  L  P  A  L  G  Q  L  P  C  L  K  F  L  S  V  K  G  M  H  G  I  T  E  A  M  E  E  F  Y  G  R  L  S  S  K  K  P  F  N  C  L  E  K  L  E  F  E  D  M  T  G  W  K  Q  W  H  A  L  G  I  G  E  F  P  T  L  E  N  L  S  I  K  N  C  P  E  L  S  L  K  I  P  I  Q  F  S  S  L  K  R  L  Q  V  R  G  C  P  V  V  F  D  D  A  Q  L  F  R  S  Q  L  E  A  M  K  Q  I  E  A  L  Y  I  R  D  C  N  S  I  T  S  F  P  F  S  I  L  P  T  T  L  K  T  I  E  I  S  G  C  P  K  L  K  F  E  A  P  V  G  E  M  F  V  E  Y  L  S  V  I  D  C  G  C  V  D  D  N  I  I  R  V  S  P  S  S  V  *  I  E  Y  Y  E  L  P  Q  L  Y  *  V  F  D  S  Y  C  N  *  N  S  H  Y  F  E  L  *  E  C  *  K  T  I  G  G  M  W  R  S  G  P  D  D  V  T  A  Y  F  E  V  *  E  A  Q  V  S  A  R  T  Y  A  G  T  P  S  I  S  Q  G  F  V  S  F  Q  L  S  R  N  R  R  R  I  A  L  Q  F  T  *  T  P  Y  Q  *  L  Q  E  T  G  E  W  P  K  G  V  A  F  T  E  T  H  R  V  S  D  P  S  *  W  E  *  R  R  Y  *  T  L  G  V  A  L  F  Y  Y  R  T  *  G  I  Q  Y  D  N  I  K  Q  P  T  S  Q  K  P  H  L  S  S  M  S  K  Y  W  W  *  F  I  S  D  W  P  S  F  L  L  F  S  P  H  F  A  S  N  S  T  N  Q  E  F  R  *  S  P  I  T  C  *  I  S  T  A  I  L  P  L  S  P  D  H  L  P  L  P  E  S  P  I  T  C  *  I  S  T  A  L  L  P  L  S  P  E  H  L  *  L  P  E  S  P  I  T  T  *  I  S  T  A  L  L  P  L  S  P  G  H  L  P  L  S  *  S  P  I  T  T  *  I  S  T  A  L  L  P  L  S  P  G  H  L  P  L  S  *  S  P  I  T  C  *  I  S  T  A  L  L  P  L  S  P  D  H  L  P  L  P  *  S  P  F  T  F  R  K  R  D  A  L  F  P  L  *  T  I  Y  F  Q  M  F  I  A  H  T  T  T  R  I  *  Q  G  G  I  L  D  K  Y  C  S  Y  L  H  H  T  D  R  L  E  M  H  V  M  I  K  T  N  D  S  P  T  D  :  M  W  I  *  K  S  E  Y  D  K  S  G  T  S  I  V  R  R  K  C  F  *   : V  N  F  Q  V  C  C  Y  R  Q  V  F  E  M  *  L  S  K  K  G  D  Y  N  Q  C  T  A  D  T  I  S  C  F  Q  C  Y  S  A  S  L  F  C  K  L  T  N  S  I  S  *  Y  V  W  D  S  T  T  T  H  F  V  R  L  K  Y  R  K  S  N  *  N  Y  N  S  R  W  L  S  K  L  Q  E </second_frame>
            <third_frame>   N  I  W  V  K  H  K  T  C  M  D  L  Y  Q  L  *  I  W  K  M  W  L  I  E  G  K  L  *  R  Q  R  *  G  R  R  I  T  L  T  S  Y  L  W  S  G  V  K  A  L  V  L  T  I  H  K  Q  K  *  T  Y  L  M  S  Y  A  H  I  K  T  L  K  K  S  K  S  V  D  T  E  G  Q  T  S  P  I  G  *  L  I  L  C  L  L  S  *  *  N  C  L  L  E  T  A  T  T  V  I  R  C  Q  H  *  D  N  S  L  V  *  N  S  F  P  L  K  G  C  M  E  S  Q  R  R  W  K  N  S  M  A  D  C  P  P  K  S  L  L  T  V  L  R  S  L  N  L  K  I  *  R  G  G  S  N  G  T  H  *  E  L  E  S  S  L  H  L  R  T  F  P  L  K  I  A  L  S  S  V  *  R  Y  P  S  N  F  Q  V  *  K  G  Y  K  L  E  V  V  Q  L  F  L  M  M  L  N  C  L  D  P  N  L  K  Q  *  S  R  L  K  H  Y  I  Y  V  I  V  T  L  L  P  P  F  L  L  A  Y  C  Q  L  P  *  R  Q  *  R  Y  L  V  A  Q  N  *  N  S  R  R  Q  L  V  R  C  L  W  S  I  *  V  *  L  I  V  V  V  *  M  I  I  S  L  E  F  L  P  A  A  C  K  L  S  I  M  S  C  H  N  F  T  R  F  L  I  P  T  A  T  E  T  L  T  I  S  N  C  E  N  V  E  K  L  S  V  A  C  G  G  A  A  Q  M  T  L  L  H  I  L  K  C  K  K  L  K  C  L  P  E  R  M  Q  E  L  L  P  S  L  K  D  L  Y  L  S  N  C  P  E  I  E  G  E  L  P  F  N  L  H  K  L  R  I  S  D  C  K  K  L  V  N  G  R  K  E  W  H  L  Q  R  L  T  E  L  V  I  H  H  D  G  S  D  E  D  I  E  H  W  E  L  P  C  S  I  T  E  L  E  V  Y  N  M  I  T  L  S  S  Q  H  L  K  S  L  T  S  L  Q  C  L  S  I  G  G  N  L  S  Q  I  G  R  L  S  S  F  S  H  L  T  S  L  Q  T  L  Q  I  R  N  F  G  N  L  Q  S  L  A  E  S  A  L  P  S  S  L  S  H  L  T  I  S  R  C  P  N  L  Q  S  L  A  E  S  A  L  P  S  S  L  S  H  L  N  I  Y  D  C  P  N  L  Q  L  L  P  E  S  A  L  P  S  S  L  S  H  L  D  I  S  H  C  P  N  L  Q  S  L  P  E  S  A  L  L  S  S  L  S  H  L  D  I  S  H  C  P  N  L  Q  S  L  A  E  S  A  L  P  S  S  L  S  H  L  T  I  S  H  C  P  N  L  H  S  L  S  E  K  G  M  P  S  S  L  S  K  L  S  I  S  K  C  S  L  L  T  P  L  L  E  F  N  K  G  E  Y  W  T  N  I  A  H  I  S  T  I  Q  I  D  W  K  C  M  *  *  L  K  R  M  T  P  Q  L  I :   C  G  F  R  R  A  S  T  T  S  L  V  H  Q  L  S  V  G  S  V  S  K  :  *  I  F  R  S  V  V  I  G  K  S  L  R  C  D  Y  Q  R  R  A  I  T  I  S  V  P  L  I  L  F  H  V  S  S  A  T  V  Q  A  S  F  V  S  *  Q  T  R  L  V  N  M  F  G  T  Q  L  L  L  I  L  *  D  L  S  T  E  N  Q  I  R  I  I  T  R  D  G  *  V  N  S  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83737" stop="82631"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1104</number_coding_nucleotides>
                  <number_encoded_amino_acids>368</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MIISLEFLPAACKLSIMSCHNFTRFLIPTATETLTISNCENVEKLSVACGGAAQMTLLHILKCKKLKCLPERMQELLPSLKDLYLSNCPEIEGELPFNLHKLRISDCKKLVNGRKEWHLQRLTELVIHHDGSDEDIEHWELPCSITELEVYNMITLSSQHLKSLTSLQCLSIGGNLSQIGRLSSFSHLTSLQTLQIRNFGNLQSLAESALPSSLSHLTISRCPNLQSLAESALPSSLSHLNIYDCPNLQLLPESALPSSLSHLDISHCPNLQSLPESALLSSLSHLDISHCPNLQSLAESALPSSLSHLTISHCPNLHSLSEKGMPSSLSKLSISKCSLLTPLLEFNKGEYWTNIAHISTIQIDWKCM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="85699" PGL_stop="84681"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85699" e_stop="84681"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="85699" e_stop="84681" e_length="1019"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85699" stop="85031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85541" stop="84681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738711" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGCCTTGATGATGGGAAATGAGCAAATTAGCATGGACAATTTGTCTACTGAAGCCTCTTGGTCTCTATTCAAAAGAAATGCATTTGAAAACATGGATCCTATGGAACATCCGGAACTTGAAGAGGTTGGAAAACAAATTGCAGCCAAGTGCAAAGGACTGCCCTTAGCTCTGAAGACGCTCGCTGGCATGTTACGCTCCAAATCAGAGGTTGAAGAGTGGAAATGTATTCTGAGAAGTGAAATATGGGAGCTGCGAGACAATGACATATTACCAGCGTTAATGTTGAGCTACAATGATCTTCCCGCACATTTAAAGCGATGCTTTTCTTTTTGTGCAATATTTCCTAAAGATTATCCATTTAGGAAAGAACAAGTTATTCATCTGTGGATTGCCAATGGTCTTGTACCTGTGGAAGATGAAATAATTCAAGATTTAGGCAACCAATACTTTCTCGAGTTGAGATCAAGATCATTATTAGAAAGTGTCCCAAATCCTTCTAAAGGGGACATAGAGAAATTCTTAATGCATGACCTTGTCAATGATTTGGCACAAATTGTATCTTCAAATCTTTGTATAAGGTTGGAAGAGAACAAAGGATCGCATATGTTGGAACAATGTCGGCACTTATCTTATTCTATAGGAGGAGATGGTGAGTTTGAGAAATTGACACCCCTCTACAAATTGGAGCAGCTGAGGACATTGCTTCCGATATATATTATTGGCGATTATCGTTATCACCCTCTAAGCAAGAGGGTGTTGCATAACATACTGCCTACACTAATATCCTTGAGGATGCTATCATTGTCTCATCATTACACGATTGTTGAGTTGCCAAATGAATTGTTTATCAAATTAAAGCTCCTCAGATTTTTGGACCTTTCTCAGACAAGGATAAAAAGGTTGCCAGATTCCATTTGTGGATTGTATAACTTGGAGACACTTCTCCTGTCATCTTGTTCTAAACTTGAGGAGCTACCGCTGCAGATGGAAAAGTTGATTAACTTGCGTCATCTTGAC</gDNA_template>
            <first_frame> L  P  *  *  W  E  M  S  K  L  A  W  T  I  C  L  L  K  P  L  G  L  Y  S  K  E  M  H  L  K  T  W  I  L  W  N  I  R  N  L  K  R  L  E  N  K  L  Q  P  S  A  K  D  C  P  *  L  *  R  R  S  L  A  C  Y  A  P  N  Q  R  L  K  S  G  N  V  F  *  E  V  K  Y  G  S  C  E  T  M  T  Y  Y  Q  R  *  C  *  A  T  M  I  F  P  H  I  *  S  D  A  F  L  F  V  Q  Y  F  L  K  I  I  H  L  G  K  N  K  L  F  I  C  G  L  P  M  V  L  Y  L  W  K  M  K  *  F  K  I  *  A  T  N  T  F  S  S  *  D  Q  D  H  Y  *  K  V  S  Q  I  L  L  K  G  T  *  R  N  S  *  C  M  T  L  S  M  I  W  H  K  L  Y  L  Q  I  F  V  *  G  W  K  R  T  K  D  R  I  C  W  N  N  V  G  T  Y  L  I  L  *  E  E  M  V  S  L  R  N  *  H  P  S  T  N  W  S  S  *  G  H  C  F  R  Y  I  L  L  A  I  I  V  I  T  L  *  A  R  G  C  C  I  T  Y  C  L  H  *  Y  P  *  G  C  Y  H  C  L  I  I  T  R  L  L  S  C  Q  M  N  C  L  S  N  *  S  S  S  D  F  W  T  F  L  R  Q  G  *  K  G  C  Q  I  P  F  V  D  C  I  T  W  R  H  F  S  C  H  L  V  L  N  L  R  S  Y  R  C  R  W  K  S  *  L  T  C  V  I  L   </first_frame>
            <second_frame>  C  L  D  D  G  K  *  A  N  *  H  G  Q  F  V  Y  *  S  L  L  V  S  I  Q  K  K  C  I  *  K  H  G  S  Y  G  T  S  G  T  *  R  G  W  K  T  N  C  S  Q  V  Q  R  T  A  L  S  S  E  D  A  R  W  H  V  T  L  Q  I  R  G  *  R  V  E  M  Y  S  E  K  *  N  M  G  A  A  R  Q  *  H  I  T  S  V  N  V  E  L  Q  *  S  S  R  T  F  K  A  M  L  F  F  L  C  N  I  S  *  R  L  S  I  *  E  R  T  S  Y  S  S  V  D  C  Q  W  S  C  T  C  G  R  *  N  N  S  R  F  R  Q  P  I  L  S  R  V  E  I  K  I  I  I  R  K  C  P  K  S  F  *  R  G  H  R  E  I  L  N  A  *  P  C  Q  *  F  G  T  N  C  I  F  K  S  L  Y  K  V  G  R  E  Q  R  I  A  Y  V  G  T  M  S  A  L  I  L  F  Y  R  R  R  W  *  V  *  E  I  D  T  P  L  Q  I  G  A  A  E  D  I  A  S  D  I  Y  Y  W  R  L  S  L  S  P  S  K  Q  E  G  V  A  *  H  T  A  Y  T  N  I  L  E  D  A  I  I  V  S  S  L  H  D  C  *  V  A  K  *  I  V  Y  Q  I  K  A  P  Q  I  F  G  P  F  S  D  K  D  K  K  V  A  R  F  H  L  W  I  V  *  L  G  D  T  S  P  V  I  L  F  *  T  *  G  A  T  A  A  D  G  K  V  D  *  L  A  S  S  *  </second_frame>
            <third_frame>   A  L  M  M  G  N  E  Q  I  S  M  D  N  L  S  T  E  A  S  W  S  L  F  K  R  N  A  F  E  N  M  D  P  M  E  H  P  E  L  E  E  V  G  K  Q  I  A  A  K  C  K  G  L  P  L  A  L  K  T  L  A  G  M  L  R  S  K  S  E  V  E  E  W  K  C  I  L  R  S  E  I  W  E  L  R  D  N  D  I  L  P  A  L  M  L  S  Y  N  D  L  P  A  H  L  K  R  C  F  S  F  C  A  I  F  P  K  D  Y  P  F  R  K  E  Q  V  I  H  L  W  I  A  N  G  L  V  P  V  E  D  E  I  I  Q  D  L  G  N  Q  Y  F  L  E  L  R  S  R  S  L  L  E  S  V  P  N  P  S  K  G  D  I  E  K  F  L  M  H  D  L  V  N  D  L  A  Q  I  V  S  S  N  L  C  I  R  L  E  E  N  K  G  S  H  M  L  E  Q  C  R  H  L  S  Y  S  I  G  G  D  G  E  F  E  K  L  T  P  L  Y  K  L  E  Q  L  R  T  L  L  P  I  Y  I  I  G  D  Y  R  Y  H  P  L  S  K  R  V  L  H  N  I  L  P  T  L  I  S  L  R  M  L  S  L  S  H  H  Y  T  I  V  E  L  P  N  E  L  F  I  K  L  K  L  L  R  F  L  D  L  S  Q  T  R  I  K  R  L  P  D  S  I  C  G  L  Y  N  L  E  T  L  L  L  S  S  C  S  K  L  E  E  L  P  L  Q  M  E  K  L  I  N  L  R  H  L  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85697" stop="84681"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1017</number_coding_nucleotides>
                  <number_encoded_amino_acids>339</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALMMGNEQISMDNLSTEASWSLFKRNAFENMDPMEHPELEEVGKQIAAKCKGLPLALKTLAGMLRSKSEVEEWKCILRSEIWELRDNDILPALMLSYNDLPAHLKRCFSFCAIFPKDYPFRKEQVIHLWIANGLVPVEDEIIQDLGNQYFLELRSRSLLESVPNPSKGDIEKFLMHDLVNDLAQIVSSNLCIRLEENKGSHMLEQCRHLSYSIGGDGEFEKLTPLYKLEQLRTLLPIYIIGDYRYHPLSKRVLHNILPTLISLRMLSLSHHYTIVELPNELFIKLKLLRFLDLSQTRIKRLPDSICGLYNLETLLLSSCSKLEELPLQMEKLINLRHLD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="86865" PGL_stop="86101"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86679" e_stop="86101"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="86679" e_stop="86101" e_length="579"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86679" stop="86101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86679" stop="86259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427534" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGATTTGAGAAATGGAGATTGGGTTAGCAGTTGGTGGTGCATTTCTCTCCTCAGCTTTGAATGTTCTGTTTGATAGGCTTGCTCCTCACGGTGATCTGCTCAACATGTTTCGTAAGCATAAGGATCATGTTAAGCTCTTAAAGAAGCTGAAAATGACTTTGCGTGGTCTTCAGATTGTGCTGAGTGATGCAGAGAATAAGCAAGCATCAAATCCATCTGTGAGCGACTGGCTTAATGAGCTTCGAGATACTGTTGACTCTGCTGAAAATTTAATAGAAGAAGTCAATTATGAAGCTTTGAGGCTTAAGGTGGAAGGCCAGCATCAAAATCTTGCAGAAACAAGCAACAAACAAGTAAGTGACCTCAACCTGTGCTTGAGTGATGATTTCTTTCGTAACATAAAGGATAAATTGGAAGAAACCATTGAAACGTTGGAGGTGTTGGAAAAGCAAATTGGTCGCCTTGGCTTAAAGGAGCATTTTATTTCGACCAAACAAGAAACTAGAACACCTTCAACTTCTTTGGTGGATGATTCTGGTATCTTTGGAAGGCAGAACGAAATAGAGAATTTGATTGG</gDNA_template>
            <first_frame> S  D  L  R  N  G  D  W  V  S  S  W  W  C  I  S  L  L  S  F  E  C  S  V  *  *  A  C  S  S  R  *  S  A  Q  H  V  S  *  A  *  G  S  C  *  A  L  K  E  A  E  N  D  F  A  W  S  S  D  C  A  E  *  C  R  E  *  A  S  I  K  S  I  C  E  R  L  A  *  *  A  S  R  Y  C  *  L  C  *  K  F  N  R  R  S  Q  L  *  S  F  E  A  *  G  G  R  P  A  S  K  S  C  R  N  K  Q  Q  T  S  K  *  P  Q  P  V  L  E  *  *  F  L  S  *  H  K  G  *  I  G  R  N  H  *  N  V  G  G  V  G  K  A  N  W  S  P  W  L  K  G  A  F  Y  F  D  Q  T  R  N  *  N  T  F  N  F  F  G  G  *  F  W  Y  L  W  K  A  E  R  N  R  E  F  D  W </first_frame>
            <second_frame>  Q  I  *  E  M  E  I  G  L  A  V  G  G  A  F  L  S  S  A  L  N  V  L  F  D  R  L  A  P  H  G  D  L  L  N  M  F  R  K  H  K  D  H  V  K  L  L  K  K  L  K  M  T  L  R  G  L  Q  I  V  L  S  D  A  E  N  K  Q  A  S  N  P  S  V  S  D  W  L  N  E  L  R  D  T  V  D  S  A  E  N  L  I  E  E  V  N  Y  E  A  L  R  L  K  V  E  G  Q  H  Q  N  L  A  E  T  S  N  K  Q  V  S  D  L  N  L  C  L  S  D  D  F  F  R  N  I  K  D  K  L  E  E  T  I  E  T  L  E  V  L  E  K  Q  I  G  R  L  G  L  K  E  H  F  I  S  T  K  Q  E  T  R  T  P  S  T  S  L  V  D  D  S  G  I  F  G  R  Q  N  E  I  E  N  L  I   </second_frame>
            <third_frame>   R  F  E  K  W  R  L  G  *  Q  L  V  V  H  F  S  P  Q  L  *  M  F  C  L  I  G  L  L  L  T  V  I  C  S  T  C  F  V  S  I  R  I  M  L  S  S  *  R  S  *  K  *  L  C  V  V  F  R  L  C  *  V  M  Q  R  I  S  K  H  Q  I  H  L  *  A  T  G  L  M  S  F  E  I  L  L  T  L  L  K  I  *  *  K  K  S  I  M  K  L  *  G  L  R  W  K  A  S  I  K  I  L  Q  K  Q  A  T  N  K  *  V  T  S  T  C  A  *  V  M  I  S  F  V  T  *  R  I  N  W  K  K  P  L  K  R  W  R  C  W  K  S  K  L  V  A  L  A  *  R  S  I  L  F  R  P  N  K  K  L  E  H  L  Q  L  L  W  W  M  I  L  V  S  L  E  G  R  T  K  *  R  I  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86669" stop="86103"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMEIGLAVGGAFLSSALNVLFDRLAPHGDLLNMFRKHKDHVKLLKKLKMTLRGLQIVLSDAENKQASNPSVSDWLNELRDTVDSAENLIEEVNYEALRLKVEGQHQNLAETSNKQVSDLNLCLSDDFFRNIKDKLEETIETLEVLEKQIGRLGLKEHFISTKQETRTPSTSLVDDSGIFGRQNEIENLI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="86865" e_stop="86762"/>
            <exon e_start="86675" e_stop="86325"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.995" e_score="0.894"/>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.894">
            <gDNA_exon_boundary e_start="86865" e_stop="86762" e_length="104"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.995">
            <gDNA_intron_boundary i_start="86761" i_stop="86676" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="0.906">
            <gDNA_exon_boundary e_start="86675" e_stop="86325" e_length="351"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86865" stop="86762"/>
              <exon start="86675" stop="86325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239430" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAAAGAGAAAAGAGGACTGTTTTGCTTCCTGAAAAATAGTTTTACTCATTTCAAGCAATCACTGATCATTCTTGTTTGCAAACTACTCTCAACATTCAACAG : ATTTGAGAAATGGAGATTGGGTTAGCAGTTGGTGGTGCATTTCTCTCCTCAGCTTTGAATGTTCTGTTTGATAGGCTTGCTCCTCACGGTGATCTGCTCAACATGTTTCGTAAGCATAAGGATCATGTTAAGCTCTTAAAGAAGCTGAAAATGACTTTGCGTGGTCTTCAGATTGTGCTGAGTGATGCAGAGAATAAGCAAGCATCAAATCCATCTGTGAGCGACTGGCTTAATGAGCTTCGAGATACTGTTGACTCTGCTGAAAATTTAATAGAAGAAGTCAATTATGAAGCTTTGAGGCTTAAGGTGGAAGGCCAGCATCAAAATCTTGCAGAAACAAGCAACAAACAA</gDNA_template>
            <first_frame> *  K  E  K  R  G  L  F  C  F  L  K  N  S  F  T  H  F  K  Q  S  L  I  I  L  V  C  K  L  L  S  T  F  N  R :   F  E  K  W  R  L  G  *  Q  L  V  V  H  F  S  P  Q  L  *  M  F  C  L  I  G  L  L  L  T  V  I  C  S  T  C  F  V  S  I  R  I  M  L  S  S  *  R  S  *  K  *  L  C  V  V  F  R  L  C  *  V  M  Q  R  I  S  K  H  Q  I  H  L  *  A  T  G  L  M  S  F  E  I  L  L  T  L  L  K  I  *  *  K  K  S  I  M  K  L  *  G  L  R  W  K  A  S  I  K  I  L  Q  K  Q  A  T  N   </first_frame>
            <second_frame>  K  K  R  K  E  D  C  F  A  S  *  K  I  V  L  L  I  S  S  N  H  *  S  F  L  F  A  N  Y  S  Q  H  S  T   : D  L  R  N  G  D  W  V  S  S  W  W  C  I  S  L  L  S  F  E  C  S  V  *  *  A  C  S  S  R  *  S  A  Q  H  V  S  *  A  *  G  S  C  *  A  L  K  E  A  E  N  D  F  A  W  S  S  D  C  A  E  *  C  R  E  *  A  S  I  K  S  I  C  E  R  L  A  *  *  A  S  R  Y  C  *  L  C  *  K  F  N  R  R  S  Q  L  *  S  F  E  A  *  G  G  R  P  A  S  K  S  C  R  N  K  Q  Q  T  </second_frame>
            <third_frame>   K  R  E  K  R  T  V  L  L  P  E  K  *  F  Y  S  F  Q  A  I  T  D  H  S  C  L  Q  T  T  L  N  I  Q  Q  :  I  *  E  M  E  I  G  L  A  V  G  G  A  F  L  S  S  A  L  N  V  L  F  D  R  L  A  P  H  G  D  L  L  N  M  F  R  K  H  K  D  H  V  K  L  L  K  K  L  K  M  T  L  R  G  L  Q  I  V  L  S  D  A  E  N  K  Q  A  S  N  P  S  V  S  D  W  L  N  E  L  R  D  T  V  D  S  A  E  N  L  I  E  E  V  N  Y  E  A  L  R  L  K  V  E  G  Q  H  Q  N  L  A  E  T  S  N  K  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86669" stop="86325"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMEIGLAVGGAFLSSALNVLFDRLAPHGDLLNMFRKHKDHVKLLKKLKMTLRGLQIVLSDAENKQASNPSVSDWLNELRDTVDSAENLIEEVNYEALRLKVEGQHQNLAETSNKQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="94389" PGL_stop="92625"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94389" e_stop="92625"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="94389" e_stop="92625" e_length="1765"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94389" stop="93565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93742" stop="92935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92961" stop="92625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553330" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGACTTACCCACTAAACAGTGAGTCACCAAAAGATGAGGCTGGACATGGCACACACACCTCGAGCACAGCTGCAGGAAATTTTGTGAAAGGTGCCAATGTGTATGGGAACGCTAAAGGCACTGCGGTTGGGATTGCCCCTCTTGCTCACCTGGCCATGTATAAGGTCTGTGATAATGATTGCTCGGAAAGTGCCATTTTAGCTGGCATGGATGAAGCAATTGATGATGGAGTAGATATCATGTCCCTTTCCCTGGGTGGATCTAGCAGGCCATTCTATTATGATGTGATTGCACTCGGGGCATACAGTGCAGCAAAAAGAGGTATTCTTGTAAGTTGCTCTGCAGGTAATGGTGGTCCATCCCATAGCACTTTATCAAACGAAGCTCCGTGGATTCTGACAGTAGGTGCAAGCACTATTGACAGGGAGCTTAAGGCCACTGTTATGCTTGGAGACCAAAAACTATTTGAGGGTGAATCAGTATTTAGTCCTAAGGTTCCGGATTCCTCATTTTACCCTTTGATTGACCCTTCACTGAATGCAACCCACATAGGCAGCCGTTTTTGCGAACCAGGTACTCTGAGTGACCCCAAATTTAAAGGCAAAATTGTTGTGTGCATGGCAGGTGGTTATGTATCCACGATTGGAAAAGGACAAGTTGTAAAGGATGCTGGAGGAGTTGGCATGATTCTTGTTAGTATCCCTGAGTATGGTTTCAGTAAGTTTGCCGATCCTCACGTCCTTCCAGCTCTGTATATTACATTCAATGATGGTATGGAGATTCTTCAATACATCAACTCAACATCAGAACCAACTGCAAGAATTATGTTCCATGGAACAATAATTGGAGATAAAGAAGCTCCGGTGGTTGCTGCATTTTCTTCTCGCGGACCAAGCTACGCTAGTCCTGGTATTTTGAAGCCTGATATAATTGGTCCTGGTAATAACATTCTTGCTGCTTGGCATACCTCCGTTGACTACGAAAAACACACAAAATCTGCCTTCAATATTATACAGGGCACCTCCATGTCTTGTCCTCACCTCAGTGGAGTTGCAGCATTGCTGAAAAGCTCACACCGCAATTGGTCCCCTTCAGCTATCAAATCAGCAATCATGACAACCGCTAACACACTGAACCTCGCCAATGTTCCCATCTTAGATGAAAGGCTCCTTCCGGCTGACATCTTTGCCATTGGTGCAGGACATGTCAATCCATTGAGAGCTAATGATCCAGGACTAATCTACGACATCTCAATTGAGGACTACCTGCCTTACCTGTGCGGTTTGAATTATACAAATCAACAGGTGGGAAGCATCGTTAAACACAAAGTGGATTGTAACAAAGTGAAACACATTCCTGAAGCTCAACTAAATTATCCATCATTCTCCATCACACTCGGAGACATCTCTCAGACATATACTAGAACAGTGACCAACGTCGGGGAAGCTAAATCATCTTACACAGTGGAAATAGATTCCCCACCCAGAGTCACTGTGATTGTTAAGCCCTCTACTCTGAAATTCTCCCAGTTGGACCAGAAGTTGAAATACCAGGTGACATTTACGAGAAGAGATGATAGCACAAGCAGTGGTATTGCTCAAGGATTCTTGAAATGGAGTAGTAAGAAGTACTCCGTAAGAAGTCCAATCGCAGTTGTGCTACAACCTACAATTGGTTTTTAGTTTTATATTTCTTCTCATTTTAGTAATTGGAACAATGTATGACAACACTATGTTTGTGGTTTCAATAAAAACCATTGAATA</gDNA_template>
            <first_frame> K  D  L  P  T  K  Q  *  V  T  K  R  *  G  W  T  W  H  T  H  L  E  H  S  C  R  K  F  C  E  R  C  Q  C  V  W  E  R  *  R  H  C  G  W  D  C  P  S  C  S  P  G  H  V  *  G  L  *  *  *  L  L  G  K  C  H  F  S  W  H  G  *  S  N  *  *  W  S  R  Y  H  V  P  F  P  G  W  I  *  Q  A  I  L  L  *  C  D  C  T  R  G  I  Q  C  S  K  K  R  Y  S  C  K  L  L  C  R  *  W  W  S  I  P  *  H  F  I  K  R  S  S  V  D  S  D  S  R  C  K  H  Y  *  Q  G  A  *  G  H  C  Y  A  W  R  P  K  T  I  *  G  *  I  S  I  *  S  *  G  S  G  F  L  I  L  P  F  D  *  P  F  T  E  C  N  P  H  R  Q  P  F  L  R  T  R  Y  S  E  *  P  Q  I  *  R  Q  N  C  C  V  H  G  R  W  L  C  I  H  D  W  K  R  T  S  C  K  G  C  W  R  S  W  H  D  S  C  *  Y  P  *  V  W  F  Q  *  V  C  R  S  S  R  P  S  S  S  V  Y  Y  I  Q  *  W  Y  G  D  S  S  I  H  Q  L  N  I  R  T  N  C  K  N  Y  V  P  W  N  N  N  W  R  *  R  S  S  G  G  C  C  I  F  F  S  R  T  K  L  R  *  S  W  Y  F  E  A  *  Y  N  W  S  W  *  *  H  S  C  C  L  A  Y  L  R  *  L  R  K  T  H  K  I  C  L  Q  Y  Y  T  G  H  L  H  V  L  S  S  P  Q  W  S  C  S  I  A  E  K  L  T  P  Q  L  V  P  F  S  Y  Q  I  S  N  H  D  N  R  *  H  T  E  P  R  Q  C  S  H  L  R  *  K  A  P  S  G  *  H  L  C  H  W  C  R  T  C  Q  S  I  E  S  *  *  S  R  T  N  L  R  H  L  N  *  G  L  P  A  L  P  V  R  F  E  L  Y  K  S  T  G  G  K  H  R  *  T  Q  S  G  L  *  Q  S  E  T  H  S  *  S  S  T  K  L  S  I  I  L  H  H  T  R  R  H  L  S  D  I  Y  *  N  S  D  Q  R  R  G  S  *  I  I  L  H  S  G  N  R  F  P  T  Q  S  H  C  D  C  *  A  L  Y  S  E  I  L  P  V  G  P  E  V  E  I  P  G  D  I  Y  E  K  R  *  *  H  K  Q  W  Y  C  S  R  I  L  E  M  E  *  *  E  V  L  R  K  K  S  N  R  S  C  A  T  T  Y  N  W  F  L  V  L  Y  F  F  S  F  *  *  L  E  Q  C  M  T  T  L  C  L  W  F  Q  *  K  P  L  N  </first_frame>
            <second_frame>  K  T  Y  P  L  N  S  E  S  P  K  D  E  A  G  H  G  T  H  T  S  S  T  A  A  G  N  F  V  K  G  A  N  V  Y  G  N  A  K  G  T  A  V  G  I  A  P  L  A  H  L  A  M  Y  K  V  C  D  N  D  C  S  E  S  A  I  L  A  G  M  D  E  A  I  D  D  G  V  D  I  M  S  L  S  L  G  G  S  S  R  P  F  Y  Y  D  V  I  A  L  G  A  Y  S  A  A  K  R  G  I  L  V  S  C  S  A  G  N  G  G  P  S  H  S  T  L  S  N  E  A  P  W  I  L  T  V  G  A  S  T  I  D  R  E  L  K  A  T  V  M  L  G  D  Q  K  L  F  E  G  E  S  V  F  S  P  K  V  P  D  S  S  F  Y  P  L  I  D  P  S  L  N  A  T  H  I  G  S  R  F  C  E  P  G  T  L  S  D  P  K  F  K  G  K  I  V  V  C  M  A  G  G  Y  V  S  T  I  G  K  G  Q  V  V  K  D  A  G  G  V  G  M  I  L  V  S  I  P  E  Y  G  F  S  K  F  A  D  P  H  V  L  P  A  L  Y  I  T  F  N  D  G  M  E  I  L  Q  Y  I  N  S  T  S  E  P  T  A  R  I  M  F  H  G  T  I  I  G  D  K  E  A  P  V  V  A  A  F  S  S  R  G  P  S  Y  A  S  P  G  I  L  K  P  D  I  I  G  P  G  N  N  I  L  A  A  W  H  T  S  V  D  Y  E  K  H  T  K  S  A  F  N  I  I  Q  G  T  S  M  S  C  P  H  L  S  G  V  A  A  L  L  K  S  S  H  R  N  W  S  P  S  A  I  K  S  A  I  M  T  T  A  N  T  L  N  L  A  N  V  P  I  L  D  E  R  L  L  P  A  D  I  F  A  I  G  A  G  H  V  N  P  L  R  A  N  D  P  G  L  I  Y  D  I  S  I  E  D  Y  L  P  Y  L  C  G  L  N  Y  T  N  Q  Q  V  G  S  I  V  K  H  K  V  D  C  N  K  V  K  H  I  P  E  A  Q  L  N  Y  P  S  F  S  I  T  L  G  D  I  S  Q  T  Y  T  R  T  V  T  N  V  G  E  A  K  S  S  Y  T  V  E  I  D  S  P  P  R  V  T  V  I  V  K  P  S  T  L  K  F  S  Q  L  D  Q  K  L  K  Y  Q  V  T  F  T  R  R  D  D  S  T  S  S  G  I  A  Q  G  F  L  K  W  S  S  K  K  Y  S  V  R  S  P  I  A  V  V  L  Q  P  T  I  G  F  *  F  Y  I  S  S  H  F  S  N  W  N  N  V  *  Q  H  Y  V  C  G  F  N  K  N  H  *  I </second_frame>
            <third_frame>   R  L  T  H  *  T  V  S  H  Q  K  M  R  L  D  M  A  H  T  P  R  A  Q  L  Q  E  I  L  *  K  V  P  M  C  M  G  T  L  K  A  L  R  L  G  L  P  L  L  L  T  W  P  C  I  R  S  V  I  M  I  A  R  K  V  P  F  *  L  A  W  M  K  Q  L  M  M  E  *  I  S  C  P  F  P  W  V  D  L  A  G  H  S  I  M  M  *  L  H  S  G  H  T  V  Q  Q  K  E  V  F  L  *  V  A  L  Q  V  M  V  V  H  P  I  A  L  Y  Q  T  K  L  R  G  F  *  Q  *  V  Q  A  L  L  T  G  S  L  R  P  L  L  C  L  E  T  K  N  Y  L  R  V  N  Q  Y  L  V  L  R  F  R  I  P  H  F  T  L  *  L  T  L  H  *  M  Q  P  T  *  A  A  V  F  A  N  Q  V  L  *  V  T  P  N  L  K  A  K  L  L  C  A  W  Q  V  V  M  Y  P  R  L  E  K  D  K  L  *  R  M  L  E  E  L  A  *  F  L  L  V  S  L  S  M  V  S  V  S  L  P  I  L  T  S  F  Q  L  C  I  L  H  S  M  M  V  W  R  F  F  N  T  S  T  Q  H  Q  N  Q  L  Q  E  L  C  S  M  E  Q  *  L  E  I  K  K  L  R  W  L  L  H  F  L  L  A  D  Q  A  T  L  V  L  V  F  *  S  L  I  *  L  V  L  V  I  T  F  L  L  L  G  I  P  P  L  T  T  K  N  T  Q  N  L  P  S  I  L  Y  R  A  P  P  C  L  V  L  T  S  V  E  L  Q  H  C  *  K  A  H  T  A  I  G  P  L  Q  L  S  N  Q  Q  S  *  Q  P  L  T  H  *  T  S  P  M  F  P  S  *  M  K  G  S  F  R  L  T  S  L  P  L  V  Q  D  M  S  I  H  *  E  L  M  I  Q  D  *  S  T  T  S  Q  L  R  T  T  C  L  T  C  A  V  *  I  I  Q  I  N  R  W  E  A  S  L  N  T  K  W  I  V  T  K  *  N  T  F  L  K  L  N  *  I  I  H  H  S  P  S  H  S  E  T  S  L  R  H  I  L  E  Q  *  P  T  S  G  K  L  N  H  L  T  Q  W  K  *  I  P  H  P  E  S  L  *  L  L  S  P  L  L  *  N  S  P  S  W  T  R  S  *  N  T  R  *  H  L  R  E  E  M  I  A  Q  A  V  V  L  L  K  D  S  *  N  G  V  V  R  S  T  P  *  E  V  Q  S  Q  L  C  Y  N  L  Q  L  V  F  S  F  I  F  L  L  I  L  V  I  G  T  M  Y  D  N  T  M  F  V  V  S  I  K  T  I  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94388" stop="92706"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1680</number_coding_nucleotides>
                  <number_encoded_amino_acids>560</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTYPLNSESPKDEAGHGTHTSSTAAGNFVKGANVYGNAKGTAVGIAPLAHLAMYKVCDNDCSESAILAGMDEAIDDGVDIMSLSLGGSSRPFYYDVIALGAYSAAKRGILVSCSAGNGGPSHSTLSNEAPWILTVGASTIDRELKATVMLGDQKLFEGESVFSPKVPDSSFYPLIDPSLNATHIGSRFCEPGTLSDPKFKGKIVVCMAGGYVSTIGKGQVVKDAGGVGMILVSIPEYGFSKFADPHVLPALYITFNDGMEILQYINSTSEPTARIMFHGTIIGDKEAPVVAAFSSRGPSYASPGILKPDIIGPGNNILAAWHTSVDYEKHTKSAFNIIQGTSMSCPHLSGVAALLKSSHRNWSPSAIKSAIMTTANTLNLANVPILDERLLPADIFAIGAGHVNPLRANDPGLIYDISIEDYLPYLCGLNYTNQQVGSIVKHKVDCNKVKHIPEAQLNYPSFSITLGDISQTYTRTVTNVGEAKSSYTVEIDSPPRVTVIVKPSTLKFSQLDQKLKYQVTFTRRDDSTSSGIAQGFLKWSSKKYSVRSPIAVVLQPTIGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="92648" PGL_stop="93406"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92648" e_stop="93406"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="92648" e_stop="93406" e_length="759"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92648" stop="93406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553411" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAAACATAGTGTTGTCATACATTGTTCCAATTACTAAAATGAGAAGAAATATAAAACTAAAAACCAATTGTAGGTTGTAGCACAACTGCGATTGGACTTCTTACGGAGTACTTCTTACTACTCCATTTCAAGAATCCTTGAGCAATACCACTGCTTGTGCTATCATCTCTTCTCGTAAATGTCACCTGGTATTTCAACTTCTGGTCCAACTGGGAGAATTTCAGAGTAGAGGGCTTAACAATCACAGTGACTCTGGGTGGGGAATCTATTTCCACTGTGTAAGATGATTTAGCTTCCCCGACGTTGGTCACTGTTCTAGTATATGTCTGAGAGATGTCTCCGAGTGTGATGGAGAATGATGGATAATTTAGTTGAGCTTCAGGAATGTGTTTCACTTTGTTACAATCCACTTTGTGTTTAACGATGCTTCCCACCTGTTGATTTGTATAATTCAAACCGCACAGGTAAGGCAGGTAGTCCTCAATTGAGATGTCGTAGATTAGTCCTGGATCATTAGCTCTCAATGGATTGACATGTCCTGCACCAATGGCAAAGATGTCAGCCGGAAGGAGCCTTTCATCTAAGATGGGAACATTGGCGAGGTTCAGTGTGTTAGCGGTTGTCATGATTGCTGATTTGATAGCTGAAGGGGACCAATTGCGGTGTGAGCTTTTCAGCAATGCTGCAACTCCACTGAGGTGAGGACAAGACATGGAGGTGCCCTGTATAATATTGAAGGCAGATTTTGTGTGTTTTT</gDNA_template>
            <first_frame> H  K  H  S  V  V  I  H  C  S  N  Y  *  N  E  K  K  Y  K  T  K  N  Q  L  *  V  V  A  Q  L  R  L  D  F  L  R  S  T  S  Y  Y  S  I  S  R  I  L  E  Q  Y  H  C  L  C  Y  H  L  F  S  *  M  S  P  G  I  S  T  S  G  P  T  G  R  I  S  E  *  R  A  *  Q  S  Q  *  L  W  V  G  N  L  F  P  L  C  K  M  I  *  L  P  R  R  W  S  L  F  *  Y  M  S  E  R  C  L  R  V  *  W  R  M  M  D  N  L  V  E  L  Q  E  C  V  S  L  C  Y  N  P  L  C  V  *  R  C  F  P  P  V  D  L  Y  N  S  N  R  T  G  K  A  G  S  P  Q  L  R  C  R  R  L  V  L  D  H  *  L  S  M  D  *  H  V  L  H  Q  W  Q  R  C  Q  P  E  G  A  F  H  L  R  W  E  H  W  R  G  S  V  C  *  R  L  S  *  L  L  I  *  *  L  K  G  T  N  C  G  V  S  F  S  A  M  L  Q  L  H  *  G  E  D  K  T  W  R  C  P  V  *  Y  *  R  Q  I  L  C  V  F </first_frame>
            <second_frame>  T  N  I  V  L  S  Y  I  V  P  I  T  K  M  R  R  N  I  K  L  K  T  N  C  R  L  *  H  N  C  D  W  T  S  Y  G  V  L  L  T  T  P  F  Q  E  S  L  S  N  T  T  A  C  A  I  I  S  S  R  K  C  H  L  V  F  Q  L  L  V  Q  L  G  E  F  Q  S  R  G  L  N  N  H  S  D  S  G  W  G  I  Y  F  H  C  V  R  *  F  S  F  P  D  V  G  H  C  S  S  I  C  L  R  D  V  S  E  C  D  G  E  *  W  I  I  *  L  S  F  R  N  V  F  H  F  V  T  I  H  F  V  F  N  D  A  S  H  L  L  I  C  I  I  Q  T  A  Q  V  R  Q  V  V  L  N  *  D  V  V  D  *  S  W  I  I  S  S  Q  W  I  D  M  S  C  T  N  G  K  D  V  S  R  K  E  P  F  I  *  D  G  N  I  G  E  V  Q  C  V  S  G  C  H  D  C  *  F  D  S  *  R  G  P  I  A  V  *  A  F  Q  Q  C  C  N  S  T  E  V  R  T  R  H  G  G  A  L  Y  N  I  E  G  R  F  C  V  F   </second_frame>
            <third_frame>   Q  T  *  C  C  H  T  L  F  Q  L  L  K  *  E  E  I  *  N  *  K  P  I  V  G  C  S  T  T  A  I  G  L  L  T  E  Y  F  L  L  L  H  F  K  N  P  *  A  I  P  L  L  V  L  S  S  L  L  V  N  V  T  W  Y  F  N  F  W  S  N  W  E  N  F  R  V  E  G  L  T  I  T  V  T  L  G  G  E  S  I  S  T  V  *  D  D  L  A  S  P  T  L  V  T  V  L  V  Y  V  *  E  M  S  P  S  V  M  E  N  D  G  *  F  S  *  A  S  G  M  C  F  T  L  L  Q  S  T  L  C  L  T  M  L  P  T  C  *  F  V  *  F  K  P  H  R  *  G  R  *  S  S  I  E  M  S  *  I  S  P  G  S  L  A  L  N  G  L  T  C  P  A  P  M  A  K  M  S  A  G  R  S  L  S  S  K  M  G  T  L  A  R  F  S  V  L  A  V  V  M  I  A  D  L  I  A  E  G  D  Q  L  R  C  E  L  F  S  N  A  A  T  P  L  R  *  G  Q  D  M  E  V  P  C  I  I  L  K  A  D  F  V  C  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92730" stop="92936"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HNCDWTSYGVLLTTPFQESLSNTTACAIISSRKCHLVFQLLVQLGEFQSRGLNNHSDSGWGIYFHCVR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93148" stop="93351"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISPGSLALNGLTCPAPMAKMSAGRSLSSKMGTLARFSVLAVVMIADLIAEGDQLRCELFSNAATPLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="94230" PGL_stop="96457"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94230" e_stop="94263"/>
            <exon e_start="94349" e_stop="94379"/>
            <exon e_start="94757" e_stop="94774"/>
            <exon e_start="95308" e_stop="95321"/>
            <exon e_start="95847" e_stop="96457"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.588"/>
          <exon-intron don_prob="0.967" acc_prob="0.240" e_score="0.516"/>
          <exon-intron don_prob="0.988" acc_prob="0.230" e_score="0.500"/>
          <exon-intron don_prob="0.752" acc_prob="0.000" e_score="0.429"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.588">
            <gDNA_exon_boundary e_start="94230" e_stop="94263" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="94264" i_stop="94348" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.516">
            <gDNA_exon_boundary e_start="94349" e_stop="94379" e_length="31"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.240">
            <gDNA_intron_boundary i_start="94380" i_stop="94756" i_length="377"/>
          </intron>
          <exon e_serial="3" e_score="0.500">
            <gDNA_exon_boundary e_start="94757" e_stop="94774" e_length="18"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.230">
            <gDNA_intron_boundary i_start="94775" i_stop="95307" i_length="533"/>
          </intron>
          <exon e_serial="4" e_score="0.429">
            <gDNA_exon_boundary e_start="95308" e_stop="95321" e_length="14"/>
          </exon>
          <intron i_serial="4" don_prob="0.752" acc_prob="0.000">
            <gDNA_intron_boundary i_start="95322" i_stop="95846" i_length="525"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="95847" e_stop="96457" e_length="611"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94230" stop="94263"/>
              <exon start="94349" stop="94379"/>
              <exon start="94757" stop="94774"/>
              <exon start="95308" stop="95321"/>
              <exon start="95847" stop="96457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553069" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATGGCCAGGTGAGCAAGAGGGGCAATCCCAACC : CCTCATCTTTTGGTGACTCACTGTTTAGTGG : CGGTTTCTATGGTCTTTG : AACTTCTAATTCTG : CTCTTTTTTTGGTACAAATTCATGTAGTACTTAAACATTTTGATATTGTGAAACTCGTACAAGTGATGAAAATGTAATGTGAATAACTTGTTGTCACATATAATTCAACAACTTCTATTGGAATCACTGACATAAAACATTGTTTCAATAACTAAAATCAGTAGAAAGAAACACATAACTAGAAACCAATTGTAGACTCTAGCACAACAGCAATTGGACTTCTTACAGAGTGCTTCTCACTAGTCCATTTCAAGAATCCTTCAATAACACCGCCATTTGTTCTGTTGACTCTTTTCGTAAACGTCACTTTGTATTTCAACTTCTGGTTCAACTTGGAGAATTTCAGAGTAGAAGGCTTGACAGTCACGGAAATTCCGGGTGGTGAAGCTACTTCCACACTGTAAGATGACTTAGCTTCCCCGACGTTAGTCACTGTTCTTGTATATGTCTGAGAAACTTCTCCGAGTGTGATGGAGAATGAAGGATAATTTAGTTGTGCTTCAGGAATGCTTTTCACTTCCCTACAATCCACTTTGCGTTGCAGGAGGTTGCCCACCTGTCGATTTGTGTAATTTAAACCACACAGGTAAGGCAGGTAGTCCTTAAATGGG</gDNA_template>
            <first_frame> H  G  Q  V  S  K  R  G  N  P  N   : P  S  S  F  G  D  S  L  F  S  G :   G  F  Y  G  L  * :   T  S  N  S   : A  L  F  L  V  Q  I  H  V  V  L  K  H  F  D  I  V  K  L  V  Q  V  M  K  M  *  C  E  *  L  V  V  T  Y  N  S  T  T  S  I  G  I  T  D  I  K  H  C  F  N  N  *  N  Q  *  K  E  T  H  N  *  K  P  I  V  D  S  S  T  T  A  I  G  L  L  T  E  C  F  S  L  V  H  F  K  N  P  S  I  T  P  P  F  V  L  L  T  L  F  V  N  V  T  L  Y  F  N  F  W  F  N  L  E  N  F  R  V  E  G  L  T  V  T  E  I  P  G  G  E  A  T  S  T  L  *  D  D  L  A  S  P  T  L  V  T  V  L  V  Y  V  *  E  T  S  P  S  V  M  E  N  E  G  *  F  S  C  A  S  G  M  L  F  T  S  L  Q  S  T  L  R  C  R  R  L  P  T  C  R  F  V  *  F  K  P  H  R  *  G  R  *  S  L  N  G </first_frame>
            <second_frame>  M  A  R  *  A  R  G  A  I  P  T  :  P  H  L  L  V  T  H  C  L  V   : A  V  S  M  V  F   : E  L  L  I  L  :  L  F  F  W  Y  K  F  M  *  Y  L  N  I  L  I  L  *  N  S  Y  K  *  *  K  C  N  V  N  N  L  L  S  H  I  I  Q  Q  L  L  L  E  S  L  T  *  N  I  V  S  I  T  K  I  S  R  K  K  H  I  T  R  N  Q  L  *  T  L  A  Q  Q  Q  L  D  F  L  Q  S  A  S  H  *  S  I  S  R  I  L  Q  *  H  R  H  L  F  C  *  L  F  S  *  T  S  L  C  I  S  T  S  G  S  T  W  R  I  S  E  *  K  A  *  Q  S  R  K  F  R  V  V  K  L  L  P  H  C  K  M  T  *  L  P  R  R  *  S  L  F  L  Y  M  S  E  K  L  L  R  V  *  W  R  M  K  D  N  L  V  V  L  Q  E  C  F  S  L  P  Y  N  P  L  C  V  A  G  G  C  P  P  V  D  L  C  N  L  N  H  T  G  K  A  G  S  P  *  M   </second_frame>
            <third_frame>   W  P  G  E  Q  E  G  Q  S  Q  P :   L  I  F  W  *  L  T  V  *  W  :  R  F  L  W  S  L  :  N  F  *  F  C :   S  F  F  G  T  N  S  C  S  T  *  T  F  *  Y  C  E  T  R  T  S  D  E  N  V  M  *  I  T  C  C  H  I  *  F  N  N  F  Y  W  N  H  *  H  K  T  L  F  Q  *  L  K  S  V  E  R  N  T  *  L  E  T  N  C  R  L  *  H  N  S  N  W  T  S  Y  R  V  L  L  T  S  P  F  Q  E  S  F  N  N  T  A  I  C  S  V  D  S  F  R  K  R  H  F  V  F  Q  L  L  V  Q  L  G  E  F  Q  S  R  R  L  D  S  H  G  N  S  G  W  *  S  Y  F  H  T  V  R  *  L  S  F  P  D  V  S  H  C  S  C  I  C  L  R  N  F  S  E  C  D  G  E  *  R  I  I  *  L  C  F  R  N  A  F  H  F  P  T  I  H  F  A  L  Q  E  V  A  H  L  S  I  C  V  I  *  T  T  Q  V  R  Q  V  V  L  K  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96029" stop="96250"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPIVDSSTTAIGLLTECFSLVHFKNPSITPPFVLLTLFVNVTLYFNFWFNLENFRVEGLTVTEIPGGEATSTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="97969" PGL_stop="97565"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97969" e_stop="97565"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="97969" e_stop="97565" e_length="405"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97969" stop="97565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576028" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTATATCTGCGTGGCCTCAGAGGATATTGTCTTTGCACACTACACATACTCCAAGTTTTCTTGGATTGCAACAGAATGTTGGCTTGTGGAGGGATGCTAACTATGGAAAAGGTGTGATCATTGGAGTCATAGACACCGGGATTGATCCTGACCATCCTTCATTCAGCGACAAAGGAATGCCTCCTCCACCTGCTAAATGGAAGGGCAAATGTGAGTCGAATTTCACTAAAAAGTGTAACAACAAGCTCATTGGTGCGAGGACTTTCCCATTAGGCAGTGATTCACCGATAGATGAGGCTGGACATGGTACACACACAGCCAGCACAGCTGCTGGTGGTTTTGTGAAAGGTGCTAATGTGAACGGTAATGCTAAAGGTACTGCTGTTGGGGTTGCTCCGCTTGC</gDNA_template>
            <first_frame> L  Y  I  C  V  A  S  E  D  I  V  F  A  H  Y  T  Y  S  K  F  S  W  I  A  T  E  C  W  L  V  E  G  C  *  L  W  K  R  C  D  H  W  S  H  R  H  R  D  *  S  *  P  S  F  I  Q  R  Q  R  N  A  S  S  T  C  *  M  E  G  Q  M  *  V  E  F  H  *  K  V  *  Q  Q  A  H  W  C  E  D  F  P  I  R  Q  *  F  T  D  R  *  G  W  T  W  Y  T  H  S  Q  H  S  C  W  W  F  C  E  R  C  *  C  E  R  *  C  *  R  Y  C  C  W  G  C  S  A  C </first_frame>
            <second_frame>  F  I  S  A  W  P  Q  R  I  L  S  L  H  T  T  H  T  P  S  F  L  G  L  Q  Q  N  V  G  L  W  R  D  A  N  Y  G  K  G  V  I  I  G  V  I  D  T  G  I  D  P  D  H  P  S  F  S  D  K  G  M  P  P  P  P  A  K  W  K  G  K  C  E  S  N  F  T  K  K  C  N  N  K  L  I  G  A  R  T  F  P  L  G  S  D  S  P  I  D  E  A  G  H  G  T  H  T  A  S  T  A  A  G  G  F  V  K  G  A  N  V  N  G  N  A  K  G  T  A  V  G  V  A  P  L   </second_frame>
            <third_frame>   L  Y  L  R  G  L  R  G  Y  C  L  C  T  L  H  I  L  Q  V  F  L  D  C  N  R  M  L  A  C  G  G  M  L  T  M  E  K  V  *  S  L  E  S  *  T  P  G  L  I  L  T  I  L  H  S  A  T  K  E  C  L  L  H  L  L  N  G  R  A  N  V  S  R  I  S  L  K  S  V  T  T  S  S  L  V  R  G  L  S  H  *  A  V  I  H  R  *  M  R  L  D  M  V  H  T  Q  P  A  Q  L  L  V  V  L  *  K  V  L  M  *  T  V  M  L  K  V  L  L  L  G  L  L  R  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97968" stop="97567"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FISAWPQRILSLHTTHTPSFLGLQQNVGLWRDANYGKGVIIGVIDTGIDPDHPSFSDKGMPPPPAKWKGKCESNFTKKCNNKLIGARTFPLGSDSPIDEAGHGTHTASTAAGGFVKGANVNGNAKGTAVGVAPL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="102110" PGL_stop="102511"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102110" e_stop="102511"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="102110" e_stop="102511" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102110" stop="102511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576028" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTATATCTGCGTGGCCTCAGAGGATATTGTCTTTGCATACTACACATACTCCGAGTTTTCTTGGTTTGCAACAGAACGTTGGCTTGTGGAGGGATGCTAACTATGGAAAAGGTGTGATCGTTGGAGTCTTGGACACCGGGATTTCCCCTGACCATCCTTCATTTAGCGACAAAGGAATGCCTCCTCCGCCTGCTAAATGGAAGGGAAAGTGTGAATCGAACTTCACTACAAAGTGTAACAACAAGCTCATTGGCGCGAGGACTTTCGTAAACAGTGATTCACCGATAGATGGTAATGGACATGGAACACACACAGCTAGTACAGCTGCTGGGGGGTTTGTGAAAGGTGCTAATGTGTATGGGAATGCTAAGGGTACCGCGGTTGGGATTGCCCCTCTTGC</gDNA_template>
            <first_frame> L  Y  I  C  V  A  S  E  D  I  V  F  A  Y  Y  T  Y  S  E  F  S  W  F  A  T  E  R  W  L  V  E  G  C  *  L  W  K  R  C  D  R  W  S  L  G  H  R  D  F  P  *  P  S  F  I  *  R  Q  R  N  A  S  S  A  C  *  M  E  G  K  V  *  I  E  L  H  Y  K  V  *  Q  Q  A  H  W  R  E  D  F  R  K  Q  *  F  T  D  R  W  *  W  T  W  N  T  H  S  *  Y  S  C  W  G  V  C  E  R  C  *  C  V  W  E  C  *  G  Y  R  G  W  D  C  P  S  C </first_frame>
            <second_frame>  F  I  S  A  W  P  Q  R  I  L  S  L  H  T  T  H  T  P  S  F  L  G  L  Q  Q  N  V  G  L  W  R  D  A  N  Y  G  K  G  V  I  V  G  V  L  D  T  G  I  S  P  D  H  P  S  F  S  D  K  G  M  P  P  P  P  A  K  W  K  G  K  C  E  S  N  F  T  T  K  C  N  N  K  L  I  G  A  R  T  F  V  N  S  D  S  P  I  D  G  N  G  H  G  T  H  T  A  S  T  A  A  G  G  F  V  K  G  A  N  V  Y  G  N  A  K  G  T  A  V  G  I  A  P  L   </second_frame>
            <third_frame>   L  Y  L  R  G  L  R  G  Y  C  L  C  I  L  H  I  L  R  V  F  L  V  C  N  R  T  L  A  C  G  G  M  L  T  M  E  K  V  *  S  L  E  S  W  T  P  G  F  P  L  T  I  L  H  L  A  T  K  E  C  L  L  R  L  L  N  G  R  E  S  V  N  R  T  S  L  Q  S  V  T  T  S  S  L  A  R  G  L  S  *  T  V  I  H  R  *  M  V  M  D  M  E  H  T  Q  L  V  Q  L  L  G  G  L  *  K  V  L  M  C  M  G  M  L  R  V  P  R  L  G  L  P  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102111" stop="102509"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FISAWPQRILSLHTTHTPSFLGLQQNVGLWRDANYGKGVIVGVLDTGISPDHPSFSDKGMPPPPAKWKGKCESNFTTKCNNKLIGARTFVNSDSPIDGNGHGTHTASTAAGGFVKGANVYGNAKGTAVGIAPL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="111770" PGL_stop="116159"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111770" e_stop="111951"/>
            <exon e_start="113623" e_stop="113670"/>
            <exon e_start="113757" e_stop="113842"/>
            <exon e_start="114649" e_stop="114779"/>
            <exon e_start="115871" e_stop="116064"/>
            <exon e_start="116136" e_stop="116159"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.997" e_score="0.945"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="0.979"/>
          <exon-intron don_prob="0.985" acc_prob="0.992" e_score="0.930"/>
          <exon-intron don_prob="0.978" acc_prob="0.944" e_score="0.992"/>
          <exon-intron don_prob="0.885" acc_prob="0.985" e_score="0.964"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="111770" e_stop="111951" e_length="182"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.997">
            <gDNA_intron_boundary i_start="111952" i_stop="113622" i_length="1671"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="113623" e_stop="113670" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="113671" i_stop="113756" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="0.930">
            <gDNA_exon_boundary e_start="113757" e_stop="113842" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.992">
            <gDNA_intron_boundary i_start="113843" i_stop="114648" i_length="806"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="114649" e_stop="114779" e_length="131"/>
          </exon>
          <intron i_serial="4" don_prob="0.978" acc_prob="0.944">
            <gDNA_intron_boundary i_start="114780" i_stop="115870" i_length="1091"/>
          </intron>
          <exon e_serial="5" e_score="0.964">
            <gDNA_exon_boundary e_start="115871" e_stop="116064" e_length="194"/>
          </exon>
          <intron i_serial="5" don_prob="0.885" acc_prob="0.985">
            <gDNA_intron_boundary i_start="116065" i_stop="116135" i_length="71"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="116136" e_stop="116159" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111770" stop="111951"/>
              <exon start="113623" stop="113670"/>
              <exon start="113757" stop="113842"/>
              <exon start="114649" stop="114779"/>
              <exon start="115871" stop="115905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111776" stop="111951"/>
              <exon start="113623" stop="113670"/>
              <exon start="113757" stop="113842"/>
              <exon start="114649" stop="114779"/>
              <exon start="115871" stop="116064"/>
              <exon start="116136" stop="116159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419012" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCTCTCAAAATCAAAAACTGAATTTTTTTTTAAATAAAAAATGAGTATTAAATTTCTTCTTTTTCAGCAGAATCATCAAGGCTTCAAGATTCTTGATTCTCCTTCACTTCACAAATCTCTACCTTGTTTTCATCAACACCCAGTTGTTTCTTTTACCAAGAAATGCTTCCACTCCTCAG : GGGTACGATTGGTGGGGTTTCCATCAGCTATACAATCCACATTGCCAA : TTCGGTATTCAGGACTATTGGTTACTAGATGTATCTCAGAAAGTTTCTCAGATCCACTTGGGCCTAATGACTTTGAATCACTTGAG : AATTTGAAACAAAAAGAGAACGCCTTTTTGACAATTTTGAAGGGAGCAAACTCTTTTCTGCCCCATGTGGTTCTTGCTAGCACAATTTTGGCTCTTATCTATCCACCTTCTTTTACTTGGTTTACCAACAG : GTACTATGCCCCTGCATTAGGATTTTTAATGTTCGCTGTTGGAGTCAATTCAAGTGAAAAGGACTTTCTTGAAGCTTTCAAGAAACCTGCTGCCATTTTTGCTGGTTATATCGGTCAATTTGCTTTGAAGCCACTACTCGGGTATCTTTTTGGCACAGTTGCAATGTCTGTATTGGGTCTTCCAACTTCCTTAG : CTGCAGGGATTATGTTGACCTCTT</gDNA_template>
            <first_frame> V  S  L  K  I  K  N  *  I  F  F  *  I  K  N  E  Y  *  I  S  S  F  S  A  E  S  S  R  L  Q  D  S  *  F  S  F  T  S  Q  I  S  T  L  F  S  S  T  P  S  C  F  F  Y  Q  E  M  L  P  L  L  R :   G  T  I  G  G  V  S  I  S  Y  T  I  H  I  A  N :   S  V  F  R  T  I  G  Y  *  M  Y  L  R  K  F  L  R  S  T  W  A  *  *  L  *  I  T  *   : E  F  E  T  K  R  E  R  L  F  D  N  F  E  G  S  K  L  F  S  A  P  C  G  S  C  *  H  N  F  G  S  Y  L  S  T  F  F  Y  L  V  Y  Q  Q  :  V  L  C  P  C  I  R  I  F  N  V  R  C  W  S  Q  F  K  *  K  G  L  S  *  S  F  Q  E  T  C  C  H  F  C  W  L  Y  R  S  I  C  F  E  A  T  T  R  V  S  F  W  H  S  C  N  V  C  I  G  S  S  N  F  L  S :   C  R  D  Y  V  D  L   </first_frame>
            <second_frame>  F  L  S  K  S  K  T  E  F  F  F  K  *  K  M  S  I  K  F  L  L  F  Q  Q  N  H  Q  G  F  K  I  L  D  S  P  S  L  H  K  S  L  P  C  F  H  Q  H  P  V  V  S  F  T  K  K  C  F  H  S  S   : G  V  R  L  V  G  F  P  S  A  I  Q  S  T  L  P   : I  R  Y  S  G  L  L  V  T  R  C  I  S  E  S  F  S  D  P  L  G  P  N  D  F  E  S  L  E  :  N  L  K  Q  K  E  N  A  F  L  T  I  L  K  G  A  N  S  F  L  P  H  V  V  L  A  S  T  I  L  A  L  I  Y  P  P  S  F  T  W  F  T  N  R :   Y  Y  A  P  A  L  G  F  L  M  F  A  V  G  V  N  S  S  E  K  D  F  L  E  A  F  K  K  P  A  A  I  F  A  G  Y  I  G  Q  F  A  L  K  P  L  L  G  Y  L  F  G  T  V  A  M  S  V  L  G  L  P  T  S  L   : A  A  G  I  M  L  T  S  </second_frame>
            <third_frame>   F  S  Q  N  Q  K  L  N  F  F  L  N  K  K  *  V  L  N  F  F  F  F  S  R  I  I  K  A  S  R  F  L  I  L  L  H  F  T  N  L  Y  L  V  F  I  N  T  Q  L  F  L  L  P  R  N  A  S  T  P  Q  :  G  Y  D  W  W  G  F  H  Q  L  Y  N  P  H  C  Q  :  F  G  I  Q  D  Y  W  L  L  D  V  S  Q  K  V  S  Q  I  H  L  G  L  M  T  L  N  H  L  R :   I  *  N  K  K  R  T  P  F  *  Q  F  *  R  E  Q  T  L  F  C  P  M  W  F  L  L  A  Q  F  W  L  L  S  I  H  L  L  L  L  G  L  P  T   : G  T  M  P  L  H  *  D  F  *  C  S  L  L  E  S  I  Q  V  K  R  T  F  L  K  L  S  R  N  L  L  P  F  L  L  V  I  S  V  N  L  L  *  S  H  Y  S  G  I  F  L  A  Q  L  Q  C  L  Y  W  V  F  Q  L  P  *  :  L  Q  G  L  C  *  P  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111810" stop="111951"/>
                    <exon start="113623" stop="113670"/>
                    <exon start="113757" stop="113842"/>
                    <exon start="114649" stop="114779"/>
                    <exon start="115871" stop="116064"/>
                    <exon start="116136" stop="116158"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMSIKFLLFQQNHQGFKILDSPSLHKSLPCFHQHPVVSFTKKCFHSSGVRLVGFPSAIQSTLPIRYSGLLVTRCISESFSDPLGPNDFESLENLKQKENAFLTILKGANSFLPHVVLASTILALIYPPSFTWFTNRYYAPALGFLMFAVGVNSSEKDFLEAFKKPAAIFAGYIGQFALKPLLGYLFGTVAMSVLGLPTSLAAGIMLTS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="111791" e_stop="111951"/>
            <exon e_start="113623" e_stop="113670"/>
            <exon e_start="113769" e_stop="113842"/>
            <exon e_start="114649" e_stop="114779"/>
            <exon e_start="115871" e_stop="116050"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.997" e_score="0.969"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.944" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="111791" e_stop="111951" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.997">
            <gDNA_intron_boundary i_start="111952" i_stop="113622" i_length="1671"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113623" e_stop="113670" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="113671" i_stop="113768" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113769" e_stop="113842" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.992">
            <gDNA_intron_boundary i_start="113843" i_stop="114648" i_length="806"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="114649" e_stop="114779" e_length="131"/>
          </exon>
          <intron i_serial="4" don_prob="0.978" acc_prob="0.944">
            <gDNA_intron_boundary i_start="114780" i_stop="115870" i_length="1091"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="115871" e_stop="116050" e_length="180"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111791" stop="111951"/>
              <exon start="113623" stop="113670"/>
              <exon start="113769" stop="113842"/>
              <exon start="114649" stop="114779"/>
              <exon start="115871" stop="116050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325965" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAATTTTTTTTTAAATAAAAAATGAGTATTAAATTTCTTCTTTTTCAGCAGAATCATCAAGGCTTCAAGATTCTTGATTCTCCTTCACTTCACAAATCTCTACCTTGTTTTCATCAACACCCAGTTGTTTCTTTTACCAAGAAATGCTTCCACTCCTCAG : GGGTACGATTGGTGGGGTTTCCATCAGCTATACAATCCACATTGCCAA : GACTATTGGTTACTAGATGTATCTCAGAAAGTTTCTCAGATCCACTTGGGCCTAATGACTTTGAATCACTTGAG : AATTTGAAACAAAAAGAGAACGCCTTTTTGACAATTTTGAAGGGAGCAAACTCTTTTCTGCCCCATGTGGTTCTTGCTAGCACAATTTTGGCTCTTATCTATCCACCTTCTTTTACTTGGTTTACCAACAG : GTACTATGCCCCTGCATTAGGATTTTTAATGTTCGCTGTTGGAGTCAATTCAAGTGAAAAGGACTTTCTTGAAGCTTTCAAGAAACCTGCTGCCATTTTTGCTGGTTATATCGGTCAATTTGCTTTGAAGCCACTACTCGGGTATCTTTTTGGCACAGTTGCAATGTCTGTATTGGGTCT</gDNA_template>
            <first_frame> *  I  F  F  *  I  K  N  E  Y  *  I  S  S  F  S  A  E  S  S  R  L  Q  D  S  *  F  S  F  T  S  Q  I  S  T  L  F  S  S  T  P  S  C  F  F  Y  Q  E  M  L  P  L  L  R :   G  T  I  G  G  V  S  I  S  Y  T  I  H  I  A  K :   T  I  G  Y  *  M  Y  L  R  K  F  L  R  S  T  W  A  *  *  L  *  I  T  *   : E  F  E  T  K  R  E  R  L  F  D  N  F  E  G  S  K  L  F  S  A  P  C  G  S  C  *  H  N  F  G  S  Y  L  S  T  F  F  Y  L  V  Y  Q  Q  :  V  L  C  P  C  I  R  I  F  N  V  R  C  W  S  Q  F  K  *  K  G  L  S  *  S  F  Q  E  T  C  C  H  F  C  W  L  Y  R  S  I  C  F  E  A  T  T  R  V  S  F  W  H  S  C  N  V  C  I  G  S </first_frame>
            <second_frame>  E  F  F  F  K  *  K  M  S  I  K  F  L  L  F  Q  Q  N  H  Q  G  F  K  I  L  D  S  P  S  L  H  K  S  L  P  C  F  H  Q  H  P  V  V  S  F  T  K  K  C  F  H  S  S   : G  V  R  L  V  G  F  P  S  A  I  Q  S  T  L  P   : R  L  L  V  T  R  C  I  S  E  S  F  S  D  P  L  G  P  N  D  F  E  S  L  E  :  N  L  K  Q  K  E  N  A  F  L  T  I  L  K  G  A  N  S  F  L  P  H  V  V  L  A  S  T  I  L  A  L  I  Y  P  P  S  F  T  W  F  T  N  R :   Y  Y  A  P  A  L  G  F  L  M  F  A  V  G  V  N  S  S  E  K  D  F  L  E  A  F  K  K  P  A  A  I  F  A  G  Y  I  G  Q  F  A  L  K  P  L  L  G  Y  L  F  G  T  V  A  M  S  V  L  G   </second_frame>
            <third_frame>   N  F  F  L  N  K  K  *  V  L  N  F  F  F  F  S  R  I  I  K  A  S  R  F  L  I  L  L  H  F  T  N  L  Y  L  V  F  I  N  T  Q  L  F  L  L  P  R  N  A  S  T  P  Q  :  G  Y  D  W  W  G  F  H  Q  L  Y  N  P  H  C  Q  :  D  Y  W  L  L  D  V  S  Q  K  V  S  Q  I  H  L  G  L  M  T  L  N  H  L  R :   I  *  N  K  K  R  T  P  F  *  Q  F  *  R  E  Q  T  L  F  C  P  M  W  F  L  L  A  Q  F  W  L  L  S  I  H  L  L  L  L  G  L  P  T   : G  T  M  P  L  H  *  D  F  *  C  S  L  L  E  S  I  Q  V  K  R  T  F  L  K  L  S  R  N  L  L  P  F  L  L  V  I  S  V  N  L  L  *  S  H  Y  S  G  I  F  L  A  Q  L  Q  C  L  Y  W  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111810" stop="111951"/>
                    <exon start="113623" stop="113670"/>
                    <exon start="113769" stop="113842"/>
                    <exon start="114649" stop="114779"/>
                    <exon start="115871" stop="116048"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMSIKFLLFQQNHQGFKILDSPSLHKSLPCFHQHPVVSFTKKCFHSSGVRLVGFPSAIQSTLPRLLVTRCISESFSDPLGPNDFESLENLKQKENAFLTILKGANSFLPHVVLASTILALIYPPSFTWFTNRYYAPALGFLMFAVGVNSSEKDFLEAFKKPAAIFAGYIGQFALKPLLGYLFGTVAMSVLG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="111772" e_stop="111951"/>
            <exon e_start="113623" e_stop="113670"/>
            <exon e_start="113769" e_stop="113894"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111772" e_stop="111951" e_length="180"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.997">
            <gDNA_intron_boundary i_start="111952" i_stop="113622" i_length="1671"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113623" e_stop="113670" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="113671" i_stop="113768" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113769" e_stop="113894" e_length="126"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111772" stop="111951"/>
              <exon start="113623" stop="113670"/>
              <exon start="113769" stop="113894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204749" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTCTCAAAATCAAAAACTGAATTTTTTTTTAAATAAAAAATGAGTATTAAATTTCTTCTTTTTCAGCAGAATCATCAAGGCTTCAAGATTCTTGATTCTCCTTCACTTCACAAATCTCTACCTTGTTTTCATCAACACCCAGTTGTTTCTTTTACCAAGAAATGCTTCCACTCCTCAG : GGGTACGATTGGTGGGGTTTCCATCAGCTATACAATCCACATTGCCAA : GACTATTGGTTACTAGATGTATCTCAGAAAGTTTCTCAGATCCACTTGGGCCTAATGACTTTGAATCACTTGAGGTTTTCCATTTTTACATCTGGAGCCATTTACTCAAAGTTCAATTATATGCTT</gDNA_template>
            <first_frame> F  S  Q  N  Q  K  L  N  F  F  L  N  K  K  *  V  L  N  F  F  F  F  S  R  I  I  K  A  S  R  F  L  I  L  L  H  F  T  N  L  Y  L  V  F  I  N  T  Q  L  F  L  L  P  R  N  A  S  T  P  Q  :  G  Y  D  W  W  G  F  H  Q  L  Y  N  P  H  C  Q  :  D  Y  W  L  L  D  V  S  Q  K  V  S  Q  I  H  L  G  L  M  T  L  N  H  L  R  F  S  I  F  T  S  G  A  I  Y  S  K  F  N  Y  M  L </first_frame>
            <second_frame>  S  L  K  I  K  N  *  I  F  F  *  I  K  N  E  Y  *  I  S  S  F  S  A  E  S  S  R  L  Q  D  S  *  F  S  F  T  S  Q  I  S  T  L  F  S  S  T  P  S  C  F  F  Y  Q  E  M  L  P  L  L  R :   G  T  I  G  G  V  S  I  S  Y  T  I  H  I  A  K :   T  I  G  Y  *  M  Y  L  R  K  F  L  R  S  T  W  A  *  *  L  *  I  T  *  G  F  P  F  L  H  L  E  P  F  T  Q  S  S  I  I  C   </second_frame>
            <third_frame>   L  S  K  S  K  T  E  F  F  F  K  *  K  M  S  I  K  F  L  L  F  Q  Q  N  H  Q  G  F  K  I  L  D  S  P  S  L  H  K  S  L  P  C  F  H  Q  H  P  V  V  S  F  T  K  K  C  F  H  S  S   : G  V  R  L  V  G  F  P  S  A  I  Q  S  T  L  P   : R  L  L  V  T  R  C  I  S  E  S  F  S  D  P  L  G  P  N  D  F  E  S  L  E  V  F  H  F  Y  I  W  S  H  L  L  K  V  Q  L  Y  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111810" stop="111951"/>
                    <exon start="113623" stop="113670"/>
                    <exon start="113769" stop="113893"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMSIKFLLFQQNHQGFKILDSPSLHKSLPCFHQHPVVSFTKKCFHSSGVRLVGFPSAIQSTLPRLLVTRCISESFSDPLGPNDFESLEVFHFYIWSHLLKVQLYA</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111817" stop="111951"/>
                    <exon start="113623" stop="113670"/>
                    <exon start="113769" stop="113894"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLNFFFFSRIIKASRFLILLHFTNLYLVFINTQLFLLPRNASTPQGYDWWGFHQLYNPHCQDYWLLDVSQKVSQIHLGLMTLNHLRFSIFTSGAIYSKFNYML</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="116527" PGL_stop="117605"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116527" e_stop="116721"/>
            <exon e_start="116813" e_stop="116895"/>
            <exon e_start="117212" e_stop="117605"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.857" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="116527" e_stop="116721" e_length="195"/>
          </exon>
          <intron i_serial="1" don_prob="0.857" acc_prob="0.995">
            <gDNA_intron_boundary i_start="116722" i_stop="116812" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="116813" e_stop="116895" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="116896" i_stop="117211" i_length="316"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="117212" e_stop="117605" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116527" stop="116721"/>
              <exon start="116813" stop="116895"/>
              <exon start="117212" stop="117605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116528" stop="116721"/>
              <exon start="116813" stop="116895"/>
              <exon start="117212" stop="117605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116528" stop="116721"/>
              <exon start="116813" stop="116895"/>
              <exon start="117212" stop="117599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116528" stop="116721"/>
              <exon start="116813" stop="116895"/>
              <exon start="117212" stop="117498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116528" stop="116721"/>
              <exon start="116813" stop="116895"/>
              <exon start="117212" stop="117468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116528" stop="116721"/>
              <exon start="116813" stop="116895"/>
              <exon start="117212" stop="117227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116702" stop="116721"/>
              <exon start="116813" stop="116895"/>
              <exon start="117212" stop="117605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375074" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGACTGCTCTCGCTGTAGGAGCTCCACTCGCTATTAACATAGATTCCCTCATGTCCCCTTCTGGAATGTCTGTTTTGTTCCTAGTGATTGCATTTCATTTATCAGCTTTCATCTTGGCCTATTTTCTTTCCGGCCTAGCCTTCCACAAAGCACCCGATGTCAAAGCTCTACAAAGAACACTGTCATACGAAACAG : GCATGCAGAGCAGTCTTTTGGCCCTTGCTCTTGCCAATAAGTTTTTTCAAGATCCCCTTGTTAGTGTCCCACCAGCTATATCA : GTTGTGATCATGTCATTAATGGGCTTCACACTAGTGATGCTGTGGACTAAGAAAAAAGAAACTGTTATGGAGTGATAAAAATTATCATTCATCGAGTTTCGAATCGTCTGTTGACTGATCCTCGAAAATTTCTCGATTATCAAAAAAAAAAAATCCACACATTATCTGTCCTAACAGTGCTTGTAATGTCAAGAACCTAATGGTACAACTAAAGACGGCATCACCAAATGTTGTGTGGAATTTTATTTTCTATATGTAATTTTCAGTAGAAATAAATGTGTACTACATTTTTCTTTTGCTATAGGTAGGTCAAGTGTTATTTAGTCTTTTTTTTAATTAGTGTTGTCTTTTTTAACTCTCATATAATATAAATTTTTAAAAATTTAGTATTACC</gDNA_template>
            <first_frame> *  L  L  S  L  *  E  L  H  S  L  L  T  *  I  P  S  C  P  L  L  E  C  L  F  C  S  *  *  L  H  F  I  Y  Q  L  S  S  W  P  I  F  F  P  A  *  P  S  T  K  H  P  M  S  K  L  Y  K  E  H  C  H  T  K  Q  :  A  C  R  A  V  F  W  P  L  L  L  P  I  S  F  F  K  I  P  L  L  V  S  H  Q  L  Y  Q :   L  *  S  C  H  *  W  A  S  H  *  *  C  C  G  L  R  K  K  K  L  L  W  S  D  K  N  Y  H  S  S  S  F  E  S  S  V  D  *  S  S  K  I  S  R  L  S  K  K  K  N  P  H  I  I  C  P  N  S  A  C  N  V  K  N  L  M  V  Q  L  K  T  A  S  P  N  V  V  W  N  F  I  F  Y  M  *  F  S  V  E  I  N  V  Y  Y  I  F  L  L  L  *  V  G  Q  V  L  F  S  L  F  F  N  *  C  C  L  F  *  L  S  Y  N  I  N  F  *  K  F  S  I  T </first_frame>
            <second_frame>  D  C  S  R  C  R  S  S  T  R  Y  *  H  R  F  P  H  V  P  F  W  N  V  C  F  V  P  S  D  C  I  S  F  I  S  F  H  L  G  L  F  S  F  R  P  S  L  P  Q  S  T  R  C  Q  S  S  T  K  N  T  V  I  R  N  R :   H  A  E  Q  S  F  G  P  C  S  C  Q  *  V  F  S  R  S  P  C  *  C  P  T  S  Y  I   : S  C  D  H  V  I  N  G  L  H  T  S  D  A  V  D  *  E  K  R  N  C  Y  G  V  I  K  I  I  I  H  R  V  S  N  R  L  L  T  D  P  R  K  F  L  D  Y  Q  K  K  K  I  H  T  L  S  V  L  T  V  L  V  M  S  R  T  *  W  Y  N  *  R  R  H  H  Q  M  L  C  G  I  L  F  S  I  C  N  F  Q  *  K  *  M  C  T  T  F  F  F  C  Y  R  *  V  K  C  Y  L  V  F  F  L  I  S  V  V  F  F  N  S  H  I  I  *  I  F  K  N  L  V  L   </second_frame>
            <third_frame>   T  A  L  A  V  G  A  P  L  A  I  N  I  D  S  L  M  S  P  S  G  M  S  V  L  F  L  V  I  A  F  H  L  S  A  F  I  L  A  Y  F  L  S  G  L  A  F  H  K  A  P  D  V  K  A  L  Q  R  T  L  S  Y  E  T   : G  M  Q  S  S  L  L  A  L  A  L  A  N  K  F  F  Q  D  P  L  V  S  V  P  P  A  I  S  :  V  V  I  M  S  L  M  G  F  T  L  V  M  L  W  T  K  K  K  E  T  V  M  E  *  *  K  L  S  F  I  E  F  R  I  V  C  *  L  I  L  E  N  F  S  I  I  K  K  K  K  S  T  H  Y  L  S  *  Q  C  L  *  C  Q  E  P  N  G  T  T  K  D  G  I  T  K  C  C  V  E  F  Y  F  L  Y  V  I  F  S  R  N  K  C  V  L  H  F  S  F  A  I  G  R  S  S  V  I  *  S  F  F  *  L  V  L  S  F  L  T  L  I  *  Y  K  F  L  K  I  *  Y  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116529" stop="116721"/>
                    <exon start="116813" stop="116895"/>
                    <exon start="117212" stop="117286"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TALAVGAPLAINIDSLMSPSGMSVLFLVIAFHLSAFILAYFLSGLAFHKAPDVKALQRTLSYETGMQSSLLALALANKFFQDPLVSVPPAISVVIMSLMGFTLVMLWTKKKETVME*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="118626" PGL_stop="122694"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121205" e_stop="122016"/>
            <exon e_start="122322" e_stop="122689"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.782" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="121205" e_stop="122016" e_length="812"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.782">
            <gDNA_intron_boundary i_start="122017" i_stop="122321" i_length="305"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="122322" e_stop="122689" e_length="368"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121205" stop="122016"/>
              <exon start="122322" stop="122403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121205" stop="121902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121205" stop="121899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121205" stop="121885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121205" stop="121881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121205" stop="121715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121205" stop="121648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121205" stop="121623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121213" stop="121724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121677" stop="122016"/>
              <exon start="122322" stop="122689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121686" stop="122016"/>
              <exon start="122322" stop="122689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121708" stop="122016"/>
              <exon start="122322" stop="122689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377773" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATTATAAGAGGCTGAAATGAATATATTATCGCTGTCAGCCTATTATTGCAGTGAGTTTTTTCCTTCTTTGATGATTCCGATTATCTCCCACTAATCCATTTCCCCGATTCAACCAATCCCAAACCTTACGGGAAATAGTTGTGTCTTGATTGATTCATGACTAACTCTTTTAGGAAGAAGTATGAAGTCTTTTTTCCCCCTCTATTTTATTATGTTTTTCAATACTATCCTCAGCCAAAAGCAACAATAACAATTACGCCTCAATCCGAAACAGGTATTTTCAACCAAGATACACGATTTAAACTTGTTTATGACATGCTGTCCAACTGTGAAATGCTTCATAGAGAGCGGTGGCGGAAAACATGTACATGTGATATAATTTGTTGAGGTTACACTCCCATCACAGTGCTACTGTAATCCATATATATTGTTGGCGGCTATCCCGTGAAGTTTAGAACTTCTTGCTCTTCAGGTTTCTTTTTTCACTTTCTTACCTTTCTCATGTCATGGACAACGTAGTTCAAATGTCGAAATTTTGTTGATTTTGATTATTGAGTTTTTTGTTCTACTATTATCTAGTCAGTGACAAGACAGTAAAAATTAGAGCTTTTCAAGTTGTGAAAATGTTGTTTTTTCTTAACAAAGTGATGTACTTTTGTTTGACTGCTTATGCTGAGTTATCGCGTCACGCTTCTCTTTGATCATTTAGCAGTTATCTCCATTTCTTTTCTCCGATTTAGGTGCCCCTGCTTGGAGGAGCACTCTGTGCCTGCACTTGGCATTTCTTTTATAACTCGGAGTCTCTTGAG : GTAGTAGTGGCTCTACAAGCAGCTTTGACAGTAATTGGTAATGCCACAATGTGCTTTGCAGCATTCCGGATATACAGATCAACACAGAACCAGTCAAAAGAACTGTGATCATCGTCTTTGAGTCATTTCACCCTACTAGATTCTCCGTCTAACTCGTACATAACGTAACGATCGTTGCTCCATGCTAAGAAATGGAAGAGTTTTTATAGCCAGTGTAGACCGGAGCTCTAAGCTAGGTCAAGAAAGCGGATTCAGAATTTTGAATTTGTATTGTTTAACTTTTAAGGTTCTTAGACTAAAACTCACTGTACATTTTTGAATTCGTGTACTCGAGATTCAAAATTTATAAATATTGATGGTTAAACCAA</gDNA_template>
            <first_frame> Q  I  I  R  G  *  N  E  Y  I  I  A  V  S  L  L  L  Q  *  V  F  S  F  F  D  D  S  D  Y  L  P  L  I  H  F  P  D  S  T  N  P  K  P  Y  G  K  *  L  C  L  D  *  F  M  T  N  S  F  R  K  K  Y  E  V  F  F  P  P  L  F  Y  Y  V  F  Q  Y  Y  P  Q  P  K  A  T  I  T  I  T  P  Q  S  E  T  G  I  F  N  Q  D  T  R  F  K  L  V  Y  D  M  L  S  N  C  E  M  L  H  R  E  R  W  R  K  T  C  T  C  D  I  I  C  *  G  Y  T  P  I  T  V  L  L  *  S  I  Y  I  V  G  G  Y  P  V  K  F  R  T  S  C  S  S  G  F  F  F  H  F  L  T  F  L  M  S  W  T  T  *  F  K  C  R  N  F  V  D  F  D  Y  *  V  F  C  S  T  I  I  *  S  V  T  R  Q  *  K  L  E  L  F  K  L  *  K  C  C  F  F  L  T  K  *  C  T  F  V  *  L  L  M  L  S  Y  R  V  T  L  L  F  D  H  L  A  V  I  S  I  S  F  L  R  F  R  C  P  C  L  E  E  H  S  V  P  A  L  G  I  S  F  I  T  R  S  L  L  R :   *  *  W  L  Y  K  Q  L  *  Q  *  L  V  M  P  Q  C  A  L  Q  H  S  G  Y  T  D  Q  H  R  T  S  Q  K  N  C  D  H  R  L  *  V  I  S  P  Y  *  I  L  R  L  T  R  T  *  R  N  D  R  C  S  M  L  R  N  G  R  V  F  I  A  S  V  D  R  S  S  K  L  G  Q  E  S  G  F  R  I  L  N  L  Y  C  L  T  F  K  V  L  R  L  K  L  T  V  H  F  *  I  R  V  L  E  I  Q  N  L  *  I  L  M  V  K  P  </first_frame>
            <second_frame>  K  L  *  E  A  E  M  N  I  L  S  L  S  A  Y  Y  C  S  E  F  F  P  S  L  M  I  P  I  I  S  H  *  S  I  S  P  I  Q  P  I  P  N  L  T  G  N  S  C  V  L  I  D  S  *  L  T  L  L  G  R  S  M  K  S  F  F  P  L  Y  F  I  M  F  F  N  T  I  L  S  Q  K  Q  Q  *  Q  L  R  L  N  P  K  Q  V  F  S  T  K  I  H  D  L  N  L  F  M  T  C  C  P  T  V  K  C  F  I  E  S  G  G  G  K  H  V  H  V  I  *  F  V  E  V  T  L  P  S  Q  C  Y  C  N  P  Y  I  L  L  A  A  I  P  *  S  L  E  L  L  A  L  Q  V  S  F  F  T  F  L  P  F  S  C  H  G  Q  R  S  S  N  V  E  I  L  L  I  L  I  I  E  F  F  V  L  L  L  S  S  Q  *  Q  D  S  K  N  *  S  F  S  S  C  E  N  V  V  F  S  *  Q  S  D  V  L  L  F  D  C  L  C  *  V  I  A  S  R  F  S  L  I  I  *  Q  L  S  P  F  L  F  S  D  L  G  A  P  A  W  R  S  T  L  C  L  H  L  A  F  L  L  *  L  G  V  S  *   : G  S  S  G  S  T  S  S  F  D  S  N  W  *  C  H  N  V  L  C  S  I  P  D  I  Q  I  N  T  E  P  V  K  R  T  V  I  I  V  F  E  S  F  H  P  T  R  F  S  V  *  L  V  H  N  V  T  I  V  A  P  C  *  E  M  E  E  F  L  *  P  V  *  T  G  A  L  S  *  V  K  K  A  D  S  E  F  *  I  C  I  V  *  L  L  R  F  L  D  *  N  S  L  Y  I  F  E  F  V  Y  S  R  F  K  I  Y  K  Y  *  W  L  N  Q </second_frame>
            <third_frame>   N  Y  K  R  L  K  *  I  Y  Y  R  C  Q  P  I  I  A  V  S  F  F  L  L  *  *  F  R  L  S  P  T  N  P  F  P  R  F  N  Q  S  Q  T  L  R  E  I  V  V  S  *  L  I  H  D  *  L  F  *  E  E  V  *  S  L  F  S  P  S  I  L  L  C  F  S  I  L  S  S  A  K  S  N  N  N  N  Y  A  S  I  R  N  R  Y  F  Q  P  R  Y  T  I  *  T  C  L  *  H  A  V  Q  L  *  N  A  S  *  R  A  V  A  E  N  M  Y  M  *  Y  N  L  L  R  L  H  S  H  H  S  A  T  V  I  H  I  Y  C  W  R  L  S  R  E  V  *  N  F  L  L  F  R  F  L  F  S  L  S  Y  L  S  H  V  M  D  N  V  V  Q  M  S  K  F  C  *  F  *  L  L  S  F  L  F  Y  Y  Y  L  V  S  D  K  T  V  K  I  R  A  F  Q  V  V  K  M  L  F  F  L  N  K  V  M  Y  F  C  L  T  A  Y  A  E  L  S  R  H  A  S  L  *  S  F  S  S  Y  L  H  F  F  S  P  I  *  V  P  L  L  G  G  A  L  C  A  C  T  W  H  F  F  Y  N  S  E  S  L  E  :  V  V  V  A  L  Q  A  A  L  T  V  I  G  N  A  T  M  C  F  A  A  F  R  I  Y  R  S  T  Q  N  Q  S  K  E  L  *  S  S  S  L  S  H  F  T  L  L  D  S  P  S  N  S  Y  I  T  *  R  S  L  L  H  A  K  K  W  K  S  F  Y  S  Q  C  R  P  E  L  *  A  R  S  R  K  R  I  Q  N  F  E  F  V  L  F  N  F  *  G  S  *  T  K  T  H  C  T  F  L  N  S  C  T  R  D  S  K  F  I  N  I  D  G  *  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121361" stop="121594"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FMTNSFRKKYEVFFPPLFYYVFQYYPQPKATITITPQSETGIFNQDTRFKLVYDMLSNCEMLHRERWRKTCTCDIIC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="118678" e_stop="119415"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="118678" e_stop="119415" e_length="738"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118678" stop="119415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118678" stop="119177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118679" stop="119280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359490" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCCCTCTCAAAACTTCATTCTCTTCCAAATCCAAAACAAACCCAGTTCTCTTTTACACATAAAGATCCAAACTTTATCTTCTTTACAAGAAAAAAGACTCATTTTCCAGCACCCATTATCAGTAATTTGAAAAATGTTGCTGCAATTTTGGGTTTTTCTGGACTTGCTTTTACAACACTAATGGTGGGCTCAGCTTCTGGTTCTGAGTTAGGTTTAATGGGTTCTTCTTCTTTTCAATTCAATGAACCTTCTAATGCTCTGTCATTGCACACTTGGGCTAGTCATGTTTCCACTATTGTTGAATGGTAATTTCTCTGTTCCTATTTTGTCTCACATATTTGACTTAATGAGAGTTTAAGATGTTAAATTGTGTTTTTTAAGATGTTAATTTTGGATTATACTTACTCCGTTTTGTATTACTTGACCCTTGTTGACGCATGACATTTTGAAACTCTAAATTTGACTACTATTACTTTATGTTGTTATTTAATATTACTAAGGATGGTATGGGAAAAAGGATTTTCTTGGCTTGCTAAAATGGAGAAGTAAAATGAGATGGAGGGAATTTATTATATGAGGTGGATCAAGATTTGAACTTTGAATTGAGGGTCCATTGGGAACGGTCTCCCTATCTTCACAAGGTAGGGGTAAGGCTACATACACGCCATCCTCTTCAGACTCCACTTGTGGTATTACATTGCGTATGTTATTGTTGTTGATCAAGATTTGAACTTTAT</gDNA_template>
            <first_frame> I  P  L  K  T  S  F  S  S  K  S  K  T  N  P  V  L  F  Y  T  *  R  S  K  L  Y  L  L  Y  K  K  K  D  S  F  S  S  T  H  Y  Q  *  F  E  K  C  C  C  N  F  G  F  F  W  T  C  F  Y  N  T  N  G  G  L  S  F  W  F  *  V  R  F  N  G  F  F  F  F  S  I  Q  *  T  F  *  C  S  V  I  A  H  L  G  *  S  C  F  H  Y  C  *  M  V  I  S  L  F  L  F  C  L  T  Y  L  T  *  *  E  F  K  M  L  N  C  V  F  *  D  V  N  F  G  L  Y  L  L  R  F  V  L  L  D  P  C  *  R  M  T  F  *  N  S  K  F  D  Y  Y  Y  F  M  L  L  F  N  I  T  K  D  G  M  G  K  R  I  F  L  A  C  *  N  G  E  V  K  *  D  G  G  N  L  L  Y  E  V  D  Q  D  L  N  F  E  L  R  V  H  W  E  R  S  P  Y  L  H  K  V  G  V  R  L  H  T  R  H  P  L  Q  T  P  L  V  V  L  H  C  V  C  Y  C  C  *  S  R  F  E  L  Y </first_frame>
            <second_frame>  S  L  S  K  L  H  S  L  P  N  P  K  Q  T  Q  F  S  F  T  H  K  D  P  N  F  I  F  F  T  R  K  K  T  H  F  P  A  P  I  I  S  N  L  K  N  V  A  A  I  L  G  F  S  G  L  A  F  T  T  L  M  V  G  S  A  S  G  S  E  L  G  L  M  G  S  S  S  F  Q  F  N  E  P  S  N  A  L  S  L  H  T  W  A  S  H  V  S  T  I  V  E  W  *  F  L  C  S  Y  F  V  S  H  I  *  L  N  E  S  L  R  C  *  I  V  F  F  K  M  L  I  L  D  Y  T  Y  S  V  L  Y  Y  L  T  L  V  D  A  *  H  F  E  T  L  N  L  T  T  I  T  L  C  C  Y  L  I  L  L  R  M  V  W  E  K  G  F  S  W  L  A  K  M  E  K  *  N  E  M  E  G  I  Y  Y  M  R  W  I  K  I  *  T  L  N  *  G  S  I  G  N  G  L  P  I  F  T  R  *  G  *  G  Y  I  H  A  I  L  F  R  L  H  L  W  Y  Y  I  A  Y  V  I  V  V  D  Q  D  L  N  F   </second_frame>
            <third_frame>   P  S  Q  N  F  I  L  F  Q  I  Q  N  K  P  S  S  L  L  H  I  K  I  Q  T  L  S  S  L  Q  E  K  R  L  I  F  Q  H  P  L  S  V  I  *  K  M  L  L  Q  F  W  V  F  L  D  L  L  L  Q  H  *  W  W  A  Q  L  L  V  L  S  *  V  *  W  V  L  L  L  F  N  S  M  N  L  L  M  L  C  H  C  T  L  G  L  V  M  F  P  L  L  L  N  G  N  F  S  V  P  I  L  S  H  I  F  D  L  M  R  V  *  D  V  K  L  C  F  L  R  C  *  F  W  I  I  L  T  P  F  C  I  T  *  P  L  L  T  H  D  I  L  K  L  *  I  *  L  L  L  L  Y  V  V  I  *  Y  Y  *  G  W  Y  G  K  K  D  F  L  G  L  L  K  W  R  S  K  M  R  W  R  E  F  I  I  *  G  G  S  R  F  E  L  *  I  E  G  P  L  G  T  V  S  L  S  S  Q  G  R  G  K  A  T  Y  T  P  S  S  S  D  S  T  C  G  I  T  L  R  M  L  L  L  L  I  K  I  *  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118679" stop="118987"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLSKLHSLPNPKQTQFSFTHKDPNFIFFTRKKTHFPAPIISNLKNVAAILGFSGLAFTTLMVGSASGSELGLMGSSSFQFNEPSNALSLHTWASHVSTIVEW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="118626" e_stop="118983"/>
            <exon e_start="120220" e_stop="120298"/>
            <exon e_start="121948" e_stop="122016"/>
            <exon e_start="122322" e_stop="122694"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.983" e_score="0.997"/>
          <exon-intron don_prob="0.991" acc_prob="0.783" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.782" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="118626" e_stop="118983" e_length="358"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.983">
            <gDNA_intron_boundary i_start="118984" i_stop="120219" i_length="1236"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120220" e_stop="120298" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.783">
            <gDNA_intron_boundary i_start="120299" i_stop="121947" i_length="1649"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121948" e_stop="122016" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.782">
            <gDNA_intron_boundary i_start="122017" i_stop="122321" i_length="305"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="122322" e_stop="122694" e_length="373"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118626" stop="118983"/>
              <exon start="120220" stop="120287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118639" stop="118983"/>
              <exon start="120220" stop="120298"/>
              <exon start="121948" stop="122016"/>
              <exon start="122322" stop="122694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120275" stop="120298"/>
              <exon start="121948" stop="122016"/>
              <exon start="122322" stop="122689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGTGAAAAACTTGACTCAATTCAATCAACAATGGCAGTTCCAATTTCATTATCCCTCTCAAAACTTCATTCTCTTCCAAATCCAAAACAAACCCAGTTCTCTTTTACACATAAAGATCCAAACTTTATCTTCTTTACAAGAAAAAAGACTCATTTTCCAGCACCCATTATCAGTAATTTGAAAAATGTTGCTGCAATTTTGGGTTTTTCTGGACTTGCTTTTACAACACTAATGGTGGGCTCAGCTTCTGGTTCTGAGTTAGGTTTAATGGGTTCTTCTTCTTTTCAATTCAATGAACCTTCTAATGCTCTGTCATTGCACACTTGGGCTAGTCATGTTTCCACTATTGTTGAATG : GGTAACTGCTATGGCTCTGGTTTGGCAATATGGAGAAAAGTCGGGTTATGAATCTTGGAAGGGACTCTCCTGGGGTATG : GTGCCCCTGCTTGGAGGAGCACTCTGTGCCTGCACTTGGCATTTCTTTTATAACTCGGAGTCTCTTGAG : GTAGTAGTGGCTCTACAAGCAGCTTTGACAGTAATTGGTAATGCCACAATGTGCTTTGCAGCATTCCGGATATACAGATCAACACAGAACCAGTCAAAAGAACTGTGATCATCGTCTTTGAGTCATTTCACCCTACTAGATTCTCCGTCTAACTCGTACATAACGTAACGATCGTTGCTCCATGCTAAGAAATGGAAGAGTTTTTATAGCCAGTGTAGACCGGAGCTCTAAGCTAGGTCAAGAAAGCGGATTCAGAATTTTGAATTTGTATTGTTTAACTTTTAAGGTTCTTAGACTAAAACTCACTGTACATTTTTGAATTCGTGTACTCGAGATTCAAAATTTATAAATATTGATGGTTAAACCAAATTCT</gDNA_template>
            <first_frame> K  V  K  N  L  T  Q  F  N  Q  Q  W  Q  F  Q  F  H  Y  P  S  Q  N  F  I  L  F  Q  I  Q  N  K  P  S  S  L  L  H  I  K  I  Q  T  L  S  S  L  Q  E  K  R  L  I  F  Q  H  P  L  S  V  I  *  K  M  L  L  Q  F  W  V  F  L  D  L  L  L  Q  H  *  W  W  A  Q  L  L  V  L  S  *  V  *  W  V  L  L  L  F  N  S  M  N  L  L  M  L  C  H  C  T  L  G  L  V  M  F  P  L  L  L  N   : G  *  L  L  W  L  W  F  G  N  M  E  K  S  R  V  M  N  L  G  R  D  S  P  G  V  W :   C  P  C  L  E  E  H  S  V  P  A  L  G  I  S  F  I  T  R  S  L  L  R :   *  *  W  L  Y  K  Q  L  *  Q  *  L  V  M  P  Q  C  A  L  Q  H  S  G  Y  T  D  Q  H  R  T  S  Q  K  N  C  D  H  R  L  *  V  I  S  P  Y  *  I  L  R  L  T  R  T  *  R  N  D  R  C  S  M  L  R  N  G  R  V  F  I  A  S  V  D  R  S  S  K  L  G  Q  E  S  G  F  R  I  L  N  L  Y  C  L  T  F  K  V  L  R  L  K  L  T  V  H  F  *  I  R  V  L  E  I  Q  N  L  *  I  L  M  V  K  P  N  S </first_frame>
            <second_frame>  K  *  K  T  *  L  N  S  I  N  N  G  S  S  N  F  I  I  P  L  K  T  S  F  S  S  K  S  K  T  N  P  V  L  F  Y  T  *  R  S  K  L  Y  L  L  Y  K  K  K  D  S  F  S  S  T  H  Y  Q  *  F  E  K  C  C  C  N  F  G  F  F  W  T  C  F  Y  N  T  N  G  G  L  S  F  W  F  *  V  R  F  N  G  F  F  F  F  S  I  Q  *  T  F  *  C  S  V  I  A  H  L  G  *  S  C  F  H  Y  C  *  M  :  G  N  C  Y  G  S  G  L  A  I  W  R  K  V  G  L  *  I  L  E  G  T  L  L  G  Y   : G  A  P  A  W  R  S  T  L  C  L  H  L  A  F  L  L  *  L  G  V  S  *   : G  S  S  G  S  T  S  S  F  D  S  N  W  *  C  H  N  V  L  C  S  I  P  D  I  Q  I  N  T  E  P  V  K  R  T  V  I  I  V  F  E  S  F  H  P  T  R  F  S  V  *  L  V  H  N  V  T  I  V  A  P  C  *  E  M  E  E  F  L  *  P  V  *  T  G  A  L  S  *  V  K  K  A  D  S  E  F  *  I  C  I  V  *  L  L  R  F  L  D  *  N  S  L  Y  I  F  E  F  V  Y  S  R  F  K  I  Y  K  Y  *  W  L  N  Q  I   </second_frame>
            <third_frame>   S  E  K  L  D  S  I  Q  S  T  M  A  V  P  I  S  L  S  L  S  K  L  H  S  L  P  N  P  K  Q  T  Q  F  S  F  T  H  K  D  P  N  F  I  F  F  T  R  K  K  T  H  F  P  A  P  I  I  S  N  L  K  N  V  A  A  I  L  G  F  S  G  L  A  F  T  T  L  M  V  G  S  A  S  G  S  E  L  G  L  M  G  S  S  S  F  Q  F  N  E  P  S  N  A  L  S  L  H  T  W  A  S  H  V  S  T  I  V  E  W :   V  T  A  M  A  L  V  W  Q  Y  G  E  K  S  G  Y  E  S  W  K  G  L  S  W  G  M  :  V  P  L  L  G  G  A  L  C  A  C  T  W  H  F  F  Y  N  S  E  S  L  E  :  V  V  V  A  L  Q  A  A  L  T  V  I  G  N  A  T  M  C  F  A  A  F  R  I  Y  R  S  T  Q  N  Q  S  K  E  L  *  S  S  S  L  S  H  F  T  L  L  D  S  P  S  N  S  Y  I  T  *  R  S  L  L  H  A  K  K  W  K  S  F  Y  S  Q  C  R  P  E  L  *  A  R  S  R  K  R  I  Q  N  F  E  F  V  L  F  N  F  *  G  S  *  T  K  T  H  C  T  F  L  N  S  C  T  R  D  S  K  F  I  N  I  D  G  *  T  K  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118628" stop="118983"/>
                    <exon start="120220" stop="120298"/>
                    <exon start="121948" stop="122016"/>
                    <exon start="122322" stop="122429"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEKLDSIQSTMAVPISLSLSKLHSLPNPKQTQFSFTHKDPNFIFFTRKKTHFPAPIISNLKNVAAILGFSGLAFTTLMVGSASGSELGLMGSSSFQFNEPSNALSLHTWASHVSTIVEWVTAMALVWQYGEKSGYESWKGLSWGMVPLLGGALCACTWHFFYNSESLEVVVALQAALTVIGNATMCFAAFRIYRSTQNQSKEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="118626" e_stop="118983"/>
            <exon e_start="120220" e_stop="120298"/>
            <exon e_start="121482" e_stop="121636"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="118626" e_stop="118983" e_length="358"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.983">
            <gDNA_intron_boundary i_start="118984" i_stop="120219" i_length="1236"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120220" e_stop="120298" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="120299" i_stop="121481" i_length="1183"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121482" e_stop="121636" e_length="155"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118626" stop="118983"/>
              <exon start="120220" stop="120287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118654" stop="118983"/>
              <exon start="120220" stop="120298"/>
              <exon start="121482" stop="121636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256164" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGTGAAAAACTTGACTCAATTCAATCAACAATGGCAGTTCCAATTTCATTATCCCTCTCAAAACTTCATTCTCTTCCAAATCCAAAACAAACCCAGTTCTCTTTTACACATAAAGATCCAAACTTTATCTTCTTTACAAGAAAAAAGACTCATTTTCCAGCACCCATTATCAGTAATTTGAAAAATGTTGCTGCAATTTTGGGTTTTTCTGGACTTGCTTTTACAACACTAATGGTGGGCTCAGCTTCTGGTTCTGAGTTAGGTTTAATGGGTTCTTCTTCTTTTCAATTCAATGAACCTTCTAATGCTCTGTCATTGCACACTTGGGCTAGTCATGTTTCCACTATTGTTGAATG : GGTAACTGCTATGGCTCTGGTTTGGCAATATGGAGAAAAGTCGGGTTATGAATCTTGGAAGGGACTCTCCTGGGGTATG : GTATTTTCAACCAAGATACACGATTTAAACTTGTTTATGACATGCTGTCCAACTGTGAAATGCTTCATAGAGAGCGGTGGCGGAAAACATGTACATGTGATATAATTTGTTGAGGTTACACTCCCATCACAGTGCTACTGTAATCCATATATATT</gDNA_template>
            <first_frame> K  V  K  N  L  T  Q  F  N  Q  Q  W  Q  F  Q  F  H  Y  P  S  Q  N  F  I  L  F  Q  I  Q  N  K  P  S  S  L  L  H  I  K  I  Q  T  L  S  S  L  Q  E  K  R  L  I  F  Q  H  P  L  S  V  I  *  K  M  L  L  Q  F  W  V  F  L  D  L  L  L  Q  H  *  W  W  A  Q  L  L  V  L  S  *  V  *  W  V  L  L  L  F  N  S  M  N  L  L  M  L  C  H  C  T  L  G  L  V  M  F  P  L  L  L  N   : G  *  L  L  W  L  W  F  G  N  M  E  K  S  R  V  M  N  L  G  R  D  S  P  G  V  W :   Y  F  Q  P  R  Y  T  I  *  T  C  L  *  H  A  V  Q  L  *  N  A  S  *  R  A  V  A  E  N  M  Y  M  *  Y  N  L  L  R  L  H  S  H  H  S  A  T  V  I  H  I  Y  </first_frame>
            <second_frame>  K  *  K  T  *  L  N  S  I  N  N  G  S  S  N  F  I  I  P  L  K  T  S  F  S  S  K  S  K  T  N  P  V  L  F  Y  T  *  R  S  K  L  Y  L  L  Y  K  K  K  D  S  F  S  S  T  H  Y  Q  *  F  E  K  C  C  C  N  F  G  F  F  W  T  C  F  Y  N  T  N  G  G  L  S  F  W  F  *  V  R  F  N  G  F  F  F  F  S  I  Q  *  T  F  *  C  S  V  I  A  H  L  G  *  S  C  F  H  Y  C  *  M  :  G  N  C  Y  G  S  G  L  A  I  W  R  K  V  G  L  *  I  L  E  G  T  L  L  G  Y   : G  I  F  N  Q  D  T  R  F  K  L  V  Y  D  M  L  S  N  C  E  M  L  H  R  E  R  W  R  K  T  C  T  C  D  I  I  C  *  G  Y  T  P  I  T  V  L  L  *  S  I  Y  I </second_frame>
            <third_frame>   S  E  K  L  D  S  I  Q  S  T  M  A  V  P  I  S  L  S  L  S  K  L  H  S  L  P  N  P  K  Q  T  Q  F  S  F  T  H  K  D  P  N  F  I  F  F  T  R  K  K  T  H  F  P  A  P  I  I  S  N  L  K  N  V  A  A  I  L  G  F  S  G  L  A  F  T  T  L  M  V  G  S  A  S  G  S  E  L  G  L  M  G  S  S  S  F  Q  F  N  E  P  S  N  A  L  S  L  H  T  W  A  S  H  V  S  T  I  V  E  W :   V  T  A  M  A  L  V  W  Q  Y  G  E  K  S  G  Y  E  S  W  K  G  L  S  W  G  M  :  V  F  S  T  K  I  H  D  L  N  L  F  M  T  C  C  P  T  V  K  C  F  I  E  S  G  G  G  K  H  V  H  V  I  *  F  V  E  V  T  L  P  S  Q  C  Y  C  N  P  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118628" stop="118983"/>
                    <exon start="120220" stop="120298"/>
                    <exon start="121482" stop="121586"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEKLDSIQSTMAVPISLSLSKLHSLPNPKQTQFSFTHKDPNFIFFTRKKTHFPAPIISNLKNVAAILGFSGLAFTTLMVGSASGSELGLMGSSSFQFNEPSNALSLHTWASHVSTIVEWVTAMALVWQYGEKSGYESWKGLSWGMVFSTKIHDLNLFMTCCPTVKCFIESGGGKHVHVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="121420" PGL_stop="121205"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121420" e_stop="121205"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="121420" e_stop="121205" e_length="216"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121420" stop="121205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373512" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAATAAAATAGAGGGGGAAAAAAGACTTCATACTTCTTCCTAAAAGAGTTAGTCATGAATCAATCAAGACACAACTATTTCCCGTAAGGTTTGGGATTGGTTGAATCGGGGAAATGGATTAGTGGGAGATAATCGGAATCATCAAAGAAGGAAAAAACTCACTGCAATAATAGGCTGACAGCGATAATATATTCATTTCAGCCTCTTATAATTTG</gDNA_template>
            <first_frame> I  I  K  *  R  G  K  K  D  F  I  L  L  P  K  R  V  S  H  E  S  I  K  T  Q  L  F  P  V  R  F  G  I  G  *  I  G  E  M  D  *  W  E  I  I  G  I  I  K  E  G  K  N  S  L  Q  *  *  A  D  S  D  N  I  F  I  S  A  S  Y  N  L </first_frame>
            <second_frame>  *  *  N  R  G  G  K  K  T  S  Y  F  F  L  K  E  L  V  M  N  Q  S  R  H  N  Y  F  P  *  G  L  G  L  V  E  S  G  K  W  I  S  G  R  *  S  E  S  S  K  K  E  K  T  H  C  N  N  R  L  T  A  I  I  Y  S  F  Q  P  L  I  I   </second_frame>
            <third_frame>   N  K  I  E  G  E  K  R  L  H  T  S  S  *  K  S  *  S  *  I  N  Q  D  T  T  I  S  R  K  V  W  D  W  L  N  R  G  N  G  L  V  G  D  N  R  N  H  Q  R  R  K  K  L  T  A  I  I  G  *  Q  R  *  Y  I  H  F  S  L  L  *  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0190J03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 261 chains have been computed
$ 
$ memory statistics:
$ 377792 bytes spliced alignments in total
$ 84 spliced alignments have been stored
$ 4497 bytes was the average size of a spliced alignment
$ 36392 bytes predicted gene locations in total
$ 25 predicted gene locations have been stored
$ 1455 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 310 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 05:42:06
-->
