<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 05:43:57"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8225" ref_strand="+" ref_description="SGN-M8225 C2_At4g11970 [cosii_markers]">
      <seq>tctcctttccaccggaattattgtgattttaaaggaggttgtaagcagatatgccatcagatactgcaagagaaaatgcatctatagctaattccattgagaccgactggaaaaatgaaagagggaatcttggcggaccagatagttcaagcctcagagttaatgaggacacgaatcgttctatagcagaggagctcacttcatctctgccaattggaatttcaagtgcaattgaaaagggtaaactctatagcataagatattttgtaatcaagagtttgaaccatgaaaatatccaattatcagtaaacagagggatttgggctactcaagccatgaatgaggccattttggatgaagcatttcataattccagcaaggttatactaatattcagtgtcaacatgagtgggtatttccaagggtacgcccaaatgatttcttcagtcggtttgagaagagaccaagtatggagtcaaggaaatggtggtcgtaatccttggggtcgaagctttgaagtgaattggctgcgattgtatgatctgcctttccaaagaactcttcaccttaagaatccatggaatcaatacaaaccagtcaaaattagtagagattgtcaggagttacctccagatattggtgaagctttatgtgagcttcttgatggaaaggatgctttggatgttgatttgaaaatggatatctttgcaaggaatgatttctcttctaaaggccatatgtagagccttcactgcatcttggatttcaagacagtaatgcatctctgatacctaatgggaccatgttttatccctcttcactctatctacatcaaattgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0190J03-rmn0T/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0190J03.1" temp_strand="+" temp_description="C11HBa0190J03.1  AC217003.1 htgs_phase:3 submitted_to_sgn_as:gi|166159197|gb|AC217003.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0190J03, complete sequence">
        <position start="9610" stop="14468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9909" g_stop="10018" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="141" r_length="110" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10019" i_stop="13099" i_length="3081">
            <donor d_prob="0.553" d_score="0.86"/>
            <acceptor a_prob="0.921" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13100" g_stop="13329" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="368" r_length="227" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13330" i_stop="13443" i_length="114">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.635" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13444" g_stop="13695" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="620" r_length="252" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13696" i_stop="13796" i_length="101">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13797" g_stop="13873" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="697" r_length="77" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13874" i_stop="14020" i_length="147">
            <donor d_prob="0.569" d_score="0.94"/>
            <acceptor a_prob="0.969" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14021" g_stop="14168" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="844" r_length="147" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0190J03.1" gen_strand="+" ref_id="SGN-M8225" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0190J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9909" e_stop="10018"/>
          <exon e_start="13100" e_stop="13329"/>
          <exon e_start="13444" e_stop="13695"/>
          <exon e_start="13797" e_stop="13873"/>
          <exon e_start="14021" e_stop="14168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAGGTTGTAAGCAGATATGCCATCAGATACTGCAAGAAAAAATGCAGCTATAGCTAATTCCATAGTGACCGACTACAAAAATGAAAGAAGGAATTTTGACGGACCAGGTAACTCTGATGCGAAATCTATTCAGAATTTAGCTATCTGTGTGGATTTTGTTTTGTTTGTATTTTTTTTTTTAGTAGTTTCTACTGAGATTTGTTACAAGGTTTCGTTGAATGTGTCTGCATGACAAAGACAAGGATGTGGTCATTTACACTGCCCACAATTTAATATTGGTGCAAAAGTTGTATGCTTCAAATAATCTTTTGGCTGGCTTTTCTATTCAACTGATGAGGAATGAGTATTCTTAAGCGTGTTAGGGATGGCAAAACAATTCCAGTCTTTTCTACTTTGACGGGAGCTTCACTTGAGAATTAGAAAGAGCTTGCTGAATTTGATAGAAAGGAGGTCCACTAGTTAGTAATTAGTGATGCCATGAAGAGTTCTAGTTACTTGCATGGTTTCTTGAGGCTGTAAGGTGGCTTGATATTATTAGGTCTTTCCACTAAACCACGAAAAAGTGAAACTAAGAGCCTGTTTGATTGGGCTTATAGCTTTTGACTTATAAGCCAAAATCCGTAAGTTAGGAGTTCTAACTTATGCTTTTGGCTTTTTTTTTTCCTATTTGGCTTAAGAAACTTAAAAACACTTTTTTATTTTACCCAAACACTACAAAAATGCTTAATAACACTTGAAATAAGTCAATCCGAACAGGCTCTAAATCTTTTCATAATTCAATTATGCGTGTTGTTCATTTGTATGAACAGTCATGGCTGTCTTTGAGATTGTGTAGAACAGTGTTGTGAAAAGCGCGCTTCAAAGCGAGGCGACCCATGTGCGCTTTTTTATCTTGAGGCGAGGCGATCTGAAAAAAGCTCTCGCTTCAGATGAAGAAGCGAGAAGCGACCCTAAGGCAAAAGCGCAATAAAGCGCGCTTTTTATAAAAAAAAGCGACAATTAGGGTTTTTTTTAAAAAAAAAAATTTAGGTTTTTTTTTTAAAAAATAATCTGAAATATAACCTTCTTTCTCCTCGCGACTCTTCTTTCACGACTCTTTGCCTTCTTTCTCTCCTCACGACTCTTCTTTCACAATACTTCTTTCCCTTCTTTCTCTCCTGACGATCTCGACTGAGGCTGCCTCTCTCTTCAACCTCCCGCGACTGCAGGTAACTTTTTGTTCATCTCTGTTTTAGCTAATGTTTATTAGTTCATCTCTATGAGTTCCTTTTCTCTTGAAATATTCAATCTTCGCCTGTGCTTCATCTCTTCATCTCTCTGAGTTTCGACTACTCTAGTTTTTTCTTCTCTTCTCTTCTTTTCTTCATCTCTGCTACCTGCGCTGTTTTTTTTTTTATTTTGTGATCAATCTAGCAGCCTTGTTGAAGAATAGGAGTTTGAATCTTTGTGATTTAATTATATTTTTTATTTTTTGCTTTATATGTTATGACTTATGAGTATTTTTGCCTATGTAATTTCTTTCAATCTAAGACTATATTACCTCTATTTAGTTGTTTAATATTTTTTTATTTTTATACTAAATGTCGCTTTTTTTAAAAAAGCGCGCGCTTCGCTTCACGCTTCTGTGAAGCAAGCCGTCGTCGCTTTTTTCCGCTTCTCGCTTACCAAAACACTGGTGTAGAAGTTTCACACCCTCCATGAATTTGTATGCACAAAAGCAGAGATGGTTTAGATGCACAACTTTTATTCCCTCGAATGAATGTGACACTTCAAGTATCTTTTGGTTGGAAATGCTATGAAGTTCATGGAGCAATTATATCATTTCAACACAATTTGTTGGAGAAACAAAGGGCAAAATCGAACTATAAATGTTACTTATTGATGAGAATAAACACTATGGTTTTTTCCTTTTCTTTTTGTGTTAAAACTCTGTTGTCAGCATCCTTTTCTAACATTCCATCAAGATTTTTGCCCTTGTCTCTAATTAGCCTAATAGTTCTTTTTTTCCACATAATGTCCCTCTTGAGATGCCTTAACTTCTTCATAAGGACATAATCTGGACTTCCAGTTACTTGATAATTTTGCCCCCGTTAATAAAATTACCTTATTCTATAAATAAATTAGTGACGATACAAGGAGTTCAGTTACTTGCATAGCTTATTGAGTATGTACAATCTGTCCTGGCCCCTGTCAGCTACAATCTGGCTTGGCATTAATTTGTTTACAATGTTGTAAAAAAGACATGCGATTGTTGAGAAAGTTGAACCTACAAATTTATGGAGTACTTTACTTATTAAGAATTGGAATCCAATTTCACGCCTTCATAATGAACCTGTGGTGTACATAAAGTTTAGAATCTAATGATAAAACTTTCAACCTGTTGTCTTATTGGATTTTAATATTGCAAATCCTCATAGATACCGTGTAGCATTTTTTGATGATCAGTGTTCAGGATCAGGAGCTAACTCCGTTTTTTTGAAATAGGTAACTTTGTATTATATCACAAAACAGTACATGGGTTGTACTGAAATCATTATATACAATTGTCTCCTTTTCCGCTTGTTTCAGTCTTTATTGAGCCTAAAACAACAATTGCCAATACAATGTCATTAGAGTATACCTGATTACACCAAAAACATAACAATAAAATGCTGTTTAACTTGACTTTCTGGACATAACAATAAATTGTAGTTTAACTTGACTTTTGTAATTATTACGTAGAAAATTCGCAGAAATAGGCTGTGTGCTCATTCATTTTCTTCTGAAAAATGTTTTGAGTTGTTGGAACTTGATGATTGAGTTTCTATGAACAAACAGTTCGAGTTAATTCCTATGCTTGCTATATTGTTTTGGTTGTGAATAATGCTTATTTTTCTTTACTGTGAGTTGTTTAGTATTTTCTGGGCTGTTATATATGCGAATCATCATAGATATCGTGTAGCATCCTTGACGATCAGTGTTCAGGAGCAAACTCCATTTTGTATAATTTCTTGTTAAATTCAACATCTCTCGACTGTAACCTTTATGAAGTTTCACGCTACCTGATCACAGGAATAAAAATTAAATAGAAGATATCTTGTAGCTTCGTTGTCCTTGACATGAATGTAGTGGTTAAATGATAAGTATATGAACTACTATATGCTGGTACATCAAAATGATTCAAATTTGAATATGGACTCTTCTCTCAGATAGTTCATGCCTCAGAGTAAATGAGGATACCAATCGTTCTATAGCAGAGGAGCTCACACTTTCATCTCCGCCGATTGGAATTTCAACTGCAATTGAAAAGGGTAAACTCTATAGCATAAGATATTTTGTAATCAAGAGTTTGAACCATGAAAATATCCAATTATCAGTAAACAGAGGGATTTGGGCTACTCAAGCCATGAATGAGGCCATTTTGGATGAAGCATTTCATGTAAGTCGATTTTCCTTTTATATCCCATGATTATTATAATATAATGCCCATCTGTAATATATATATGCATATAATCTTAAATACAACAAATGATTGTGTTTATTTTGGGAGCAGAATTCCAGCAAGGTTATACTAATATTCAGTGTCAACACTAGTGGGTATTTCCAAGGGTATGCCCAAATGATTTCTTCTGTCGGTTTGAGAAGAGACCAAGTTTGGAGTCAAGGAAATGGTGGTCGTAATTCTTGGGGTCGAAGCTTTGAAGTGAATTGGCTGCGATTGTATGATCTGCCTTTTCAAAGAACTCTTCACCTTAAGAATCCATGGAATCAAAACAAACCAGTCAAAATTAGTAGAGATTGTCAGGCATGGGTTATATTCTTGTCTTAGTACTATTCACTTAATTTTTCAATGTACTCTTGTTAGTAGAGAGGCTTTTATGACCCTGGTACATGTATTGCTAACAGGAGTTACCTCCAGATATTGGTGAAGCTTTATGTGAGCTCCTTGATGGACAGGATGCTTTGGATGTTAATTTGAAAATGTATAGCTCTTTCCTTGAAAACTTAAATAGTGCCCGTTCCATTATTTGGAAACATACAGCCTTTTTTCAAAATTGAATTAGTGCTAGAGTTGTGGAAAAATTGGTCCAAATGATTTTTCTCTTTACAATTGTTATTGGCTCATCCAGGGATGTCTTTGCAAGGAATGAGCTCTCTTCTAAAAGGCCATATGTAGAGCCTTCACTGCATCTTGGAGATCAAGACTATAATGCATCTCTGATACCTAATGGGACCATGTTTTCACCCTCTTTACTCTACCAACATCAAATTGATGCT</genome_strand>
        <mrna_strand>AAGGAGGTTGTAAGCAGATATGCCATCAGATACTGCAAGAGAAAATGCATCTATAGCTAATTCCATTGAGACCGACTGGAAAAATGAAAGAGGGAATCTTGGCGGACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTCAAGCCTCAGAGTTAATGAGGACACGAATCGTTCTATAGCAGAGGAGCT--CAC-TTCATCTCTGCCAATTGGAATTTCAAGTGCAATTGAAAAGGGTAAACTCTATAGCATAAGATATTTTGTAATCAAGAGTTTGAACCATGAAAATATCCAATTATCAGTAAACAGAGGGATTTGGGCTACTCAAGCCATGAATGAGGCCATTTTGGATGAAGCATTTCAT..................................................................................................................AATTCCAGCAAGGTTATACTAATATTCAGTGTCAACATGAGTGGGTATTTCCAAGGGTACGCCCAAATGATTTCTTCAGTCGGTTTGAGAAGAGACCAAGTATGGAGTCAAGGAAATGGTGGTCGTAATCCTTGGGGTCGAAGCTTTGAAGTGAATTGGCTGCGATTGTATGATCTGCCTTTCCAAAGAACTCTTCACCTTAAGAATCCATGGAATCAATACAAACCAGTCAAAATTAGTAGAGATTGTCAG.....................................................................................................GAGTTACCTCCAGATATTGGTGAAGCTTTATGTGAGCTTCTTGATGGAAAGGATGCTTTGGATGTTGATTTGAAAAT...................................................................................................................................................GGATATCTTTGCAAGGAATGATTTCTCTTCT-AAAGGCCATATGTAGAGCCTTCACTGCATCTTGGATTTCAAGACAGTAATGCATCTCTGATACCTAATGGGACCATGTTTTATCCCTCTTCACTCTATCTACATCAAATTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>1</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="9909" PGL_stop="14168"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9909" e_stop="10018"/>
            <exon e_start="13100" e_stop="13329"/>
            <exon e_start="13444" e_stop="13695"/>
            <exon e_start="13797" e_stop="13873"/>
            <exon e_start="14021" e_stop="14168"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.553" acc_prob="0.921" e_score="0.909"/>
          <exon-intron don_prob="0.999" acc_prob="0.635" e_score="0.957"/>
          <exon-intron don_prob="0.993" acc_prob="0.988" e_score="0.968"/>
          <exon-intron don_prob="0.569" acc_prob="0.969" e_score="0.961"/>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="9909" e_stop="10018" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.553" acc_prob="0.921">
            <gDNA_intron_boundary i_start="10019" i_stop="13099" i_length="3081"/>
          </intron>
          <exon e_serial="2" e_score="0.957">
            <gDNA_exon_boundary e_start="13100" e_stop="13329" e_length="230"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.635">
            <gDNA_intron_boundary i_start="13330" i_stop="13443" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="0.968">
            <gDNA_exon_boundary e_start="13444" e_stop="13695" e_length="252"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.988">
            <gDNA_intron_boundary i_start="13696" i_stop="13796" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="0.961">
            <gDNA_exon_boundary e_start="13797" e_stop="13873" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.569" acc_prob="0.969">
            <gDNA_intron_boundary i_start="13874" i_stop="14020" i_length="147"/>
          </intron>
          <exon e_serial="5" e_score="0.912">
            <gDNA_exon_boundary e_start="14021" e_stop="14168" e_length="148"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9909" stop="10018"/>
              <exon start="13100" stop="13329"/>
              <exon start="13444" stop="13695"/>
              <exon start="13797" stop="13873"/>
              <exon start="14021" stop="14168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8225" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGGAGGTTGTAAGCAGATATGCCATCAGATACTGCAAGAAAAAATGCAGCTATAGCTAATTCCATAGTGACCGACTACAAAAATGAAAGAAGGAATTTTGACGGACCAG : ATAGTTCATGCCTCAGAGTAAATGAGGATACCAATCGTTCTATAGCAGAGGAGCTCACACTTTCATCTCCGCCGATTGGAATTTCAACTGCAATTGAAAAGGGTAAACTCTATAGCATAAGATATTTTGTAATCAAGAGTTTGAACCATGAAAATATCCAATTATCAGTAAACAGAGGGATTTGGGCTACTCAAGCCATGAATGAGGCCATTTTGGATGAAGCATTTCAT : AATTCCAGCAAGGTTATACTAATATTCAGTGTCAACACTAGTGGGTATTTCCAAGGGTATGCCCAAATGATTTCTTCTGTCGGTTTGAGAAGAGACCAAGTTTGGAGTCAAGGAAATGGTGGTCGTAATTCTTGGGGTCGAAGCTTTGAAGTGAATTGGCTGCGATTGTATGATCTGCCTTTTCAAAGAACTCTTCACCTTAAGAATCCATGGAATCAAAACAAACCAGTCAAAATTAGTAGAGATTGTCAG : GAGTTACCTCCAGATATTGGTGAAGCTTTATGTGAGCTCCTTGATGGACAGGATGCTTTGGATGTTAATTTGAAAAT : GGATGTCTTTGCAAGGAATGAGCTCTCTTCTAAAAGGCCATATGTAGAGCCTTCACTGCATCTTGGAGATCAAGACTATAATGCATCTCTGATACCTAATGGGACCATGTTTTCACCCTCTTTACTCTACCAACATCAAATTGATGCT</gDNA_template>
            <first_frame> Q  E  V  V  S  R  Y  A  I  R  Y  C  K  K  K  C  S  Y  S  *  F  H  S  D  R  L  Q  K  *  K  K  E  F  *  R  T  R :   *  F  M  P  Q  S  K  *  G  Y  Q  S  F  Y  S  R  G  A  H  T  F  I  S  A  D  W  N  F  N  C  N  *  K  G  *  T  L  *  H  K  I  F  C  N  Q  E  F  E  P  *  K  Y  P  I  I  S  K  Q  R  D  L  G  Y  S  S  H  E  *  G  H  F  G  *  S  I  S   : *  F  Q  Q  G  Y  T  N  I  Q  C  Q  H  *  W  V  F  P  R  V  C  P  N  D  F  F  C  R  F  E  K  R  P  S  L  E  S  R  K  W  W  S  *  F  L  G  S  K  L  *  S  E  L  A  A  I  V  *  S  A  F  S  K  N  S  S  P  *  E  S  M  E  S  K  Q  T  S  Q  N  *  *  R  L  S   : G  V  T  S  R  Y  W  *  S  F  M  *  A  P  *  W  T  G  C  F  G  C  *  F  E  N  :  G  C  L  C  K  E  *  A  L  F  *  K  A  I  C  R  A  F  T  A  S  W  R  S  R  L  *  C  I  S  D  T  *  W  D  H  V  F  T  L  F  T  L  P  T  S  N  *  C  </first_frame>
            <second_frame>  R  R  L  *  A  D  M  P  S  D  T  A  R  K  N  A  A  I  A  N  S  I  V  T  D  Y  K  N  E  R  R  N  F  D  G  P   : D  S  S  C  L  R  V  N  E  D  T  N  R  S  I  A  E  E  L  T  L  S  S  P  P  I  G  I  S  T  A  I  E  K  G  K  L  Y  S  I  R  Y  F  V  I  K  S  L  N  H  E  N  I  Q  L  S  V  N  R  G  I  W  A  T  Q  A  M  N  E  A  I  L  D  E  A  F  H  :  N  S  S  K  V  I  L  I  F  S  V  N  T  S  G  Y  F  Q  G  Y  A  Q  M  I  S  S  V  G  L  R  R  D  Q  V  W  S  Q  G  N  G  G  R  N  S  W  G  R  S  F  E  V  N  W  L  R  L  Y  D  L  P  F  Q  R  T  L  H  L  K  N  P  W  N  Q  N  K  P  V  K  I  S  R  D  C  Q  :  E  L  P  P  D  I  G  E  A  L  C  E  L  L  D  G  Q  D  A  L  D  V  N  L  K  M :   D  V  F  A  R  N  E  L  S  S  K  R  P  Y  V  E  P  S  L  H  L  G  D  Q  D  Y  N  A  S  L  I  P  N  G  T  M  F  S  P  S  L  L  Y  Q  H  Q  I  D  A </second_frame>
            <third_frame>   G  G  C  K  Q  I  C  H  Q  I  L  Q  E  K  M  Q  L  *  L  I  P  *  *  P  T  T  K  M  K  E  G  I  L  T  D  Q  :  I  V  H  A  S  E  *  M  R  I  P  I  V  L  *  Q  R  S  S  H  F  H  L  R  R  L  E  F  Q  L  Q  L  K  R  V  N  S  I  A  *  D  I  L  *  S  R  V  *  T  M  K  I  S  N  Y  Q  *  T  E  G  F  G  L  L  K  P  *  M  R  P  F  W  M  K  H  F  I :   I  P  A  R  L  Y  *  Y  S  V  S  T  L  V  G  I  S  K  G  M  P  K  *  F  L  L  S  V  *  E  E  T  K  F  G  V  K  E  M  V  V  V  I  L  G  V  E  A  L  K  *  I  G  C  D  C  M  I  C  L  F  K  E  L  F  T  L  R  I  H  G  I  K  T  N  Q  S  K  L  V  E  I  V  R :   S  Y  L  Q  I  L  V  K  L  Y  V  S  S  L  M  D  R  M  L  W  M  L  I  *  K   : W  M  S  L  Q  G  M  S  S  L  L  K  G  H  M  *  S  L  H  C  I  L  E  I  K  T  I  M  H  L  *  Y  L  M  G  P  C  F  H  P  L  Y  S  T  N  I  K  L  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0190J03.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9922" stop="10018"/>
                    <exon start="13100" stop="13329"/>
                    <exon start="13444" stop="13695"/>
                    <exon start="13797" stop="13873"/>
                    <exon start="14021" stop="14168"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ADMPSDTARKNAAIANSIVTDYKNERRNFDGPDSSCLRVNEDTNRSIAEELTLSSPPIGISTAIEKGKLYSIRYFVIKSLNHENIQLSVNRGIWATQAMNEAILDEAFHNSSKVILIFSVNTSGYFQGYAQMISSVGLRRDQVWSQGNGGRNSWGRSFEVNWLRLYDLPFQRTLHLKNPWNQNKPVKISRDCQELPPDIGEALCELLDGQDALDVNLKMDVFARNELSSKRPYVEPSLHLGDQDYNASLIPNGTMFSPSLLYQHQIDA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 9 chains have been computed
$ 
$ memory statistics:
$ 2024 bytes spliced alignments in total
$ 1 spliced alignments have been stored
$ 2024 bytes was the average size of a spliced alignment
$ 5656 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5656 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 9 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 05:44:01
-->
