<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 21:00:05"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329740" ref_strand="+" ref_description="SGN-U329740        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | syntaxin 72 (SYP72), identical to syntaxin of plants 72 (SYP72) (GI:13811650)(Arabidopsis thaliana); identified as SYP72 in Sanderfoot, A.A., et al, Plant Physiology 124:1558-69(2000); syntaxin 8 - Homo sapiens, EMBL:AF115323 | chr3:16622398-16624325 REVERSE | Aliases: F18N11.40(evalue: 3e-44, score=174) genbank/nr: gi|18407953|ref|NP_566878.1| syntaxin SYP72 [Arabidopsis thaliana] gi|28380158|sp|Q94KK6|SY72_ARATH Syntaxin 72 (AtSYP72) gi|13811650|gb|AAK40226.1| syntaxin of plants 72 [Arabidopsis thaliana](evalue: 2e-42, score=174)">
      <seq>acgtttctctctccttcctttttcccgtccgccatcattttctacttctccgaaatcctccgtcaccgggaaaaataagttaaccggaaccgaaaatgagcgtcatcgacattatcttcagagtcgatacgatatgtaagaagtacgaaaagtacgatgtcgagaagcattcagctaatgattcccccggcgacgccttcgctcgcctttattcgtccttcgaatctcaaattgacgctacttctgagaaagcagagatggctgctatggaaactaacagagctaaagcggtggctatgaaggcggaagtacgacgaacaaaggctcgtttaatggatgaaatcaaaaaattgcacaaacttgctcagaaaaaggttaaaggactatcccaagaggaactggagactcgtggtgatttggtacatatgctatcggagagaattcaggcaatacctgatggaagtataaatgcagccaaaacaacaggaggtcgcgggacttcatcattcaacaaaaatataaaatttgactcagagggacagttcaacgagggtttctacgagcaaactgaagagggctctcattttagatctgagtatgagatgcggaaaatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="3889" stop="5893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4187" g_stop="4433" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4434" i_stop="4512" i_length="79">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4513" g_stop="4638" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="374" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4639" i_stop="5273" i_length="635">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5274" g_stop="5433" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="534" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5434" i_stop="5511" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5512" g_stop="5593" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="616" r_length="82" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-U329740" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4187" e_stop="4433"/>
          <exon e_start="4513" e_stop="4638"/>
          <exon e_start="5274" e_stop="5433"/>
          <exon e_start="5512" e_stop="5593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTCTCTCTCCTCCCTTTTTCCCGTCCGCCATCATTTTCTACTTCTCCGAAATCCTCCGTCACC-GGAAAAATAAGTTAACCGGCACCGAAAATGAGCGTTATCGACATTATCCTCAGAGTCGATACGATATGTAAGAAGTACGAAAAGTACGATGTCGAGAAGCATTCAGCTAATGATTCCCCCGGCGATGCCTTCGCTCGCCTTTATTCGTCCTTCGAATCTCAAATTGACGCTACTTCTGAGGTAATTTCTCGTTCCGATTTCAAAGTTGAATCGAATTTAGAGGTTTTTTTTTTGAGAAATTTGTTGTTCGATTTTGCAGAAAGCAGAGATGGCTGCTATGGAAACTAACAGAGCTAAAGCGGTGGCTATGAAGGCGGAGGTACGACGAACAAAGGCGCGTTTAATGGATGAAATCAAAAAATTGCACAAACTTGCTCAGAAAAAGGTAAAAATTTGTTTAAATTTTGGGTATTTTGGTGTTTTAATGTATGTATGTAATTGGAGAAGTTGTTCTTTTGTGTGTTTTCGAGAATTCTGTATTTTGCTCGTTGTTTTGGTTACCCATCCAACGTCTAGTACCTGTATTTGGACCCATTTAATGAAAGCGCTCTGTACCAGGATTTTTTCTATATCGAGGCTCGAACCTTAGACCTCTAGTTAAGTACGAAGCTCATCACAATTCTTGATAGTGCGTCAAGGCGAGCTTTGAATGTGATTTTGAACCATATGGTTTTCTTTTTATGTTTAGTAATGTCAAAATTAGTTGATAGGTTCTCCTGTTGTAAGTGTTATGTTGAGCAAAATGGTTGCTTCCAACATTCCCGAGTATCATGTTACTCATACTATCCAAAAATGCTCCCATAACCATGTTGGATCCTTCTAAATGCACTACTTTTGAAGAATCCAACATGCGCTTGTTGACGTTTCTTAAGAGTCCAAGCAACAAAGATATTAGGTATAAAGAAAGTTTAACTGCGGAATTTAATTACCCAAGGTGCTAGTTTTGATAACTTGTCTTTTGGTCGAGGTATATAGCTTTTTACATTGGGCAAATGTTAGTGATAACTAGATTACAATCAGGTTAAAGGACTATCCCAAGAGGAACTGGAGACTCGTGGTGATTTGGTACATATGCTATCGGAGAGAATTCAGGCAATACCTGATGGGAGTATAAATGCAGCCAAAACAACAGGAGGTCGCGGGACTTCATCATTCAACAAAAATATAAAATTTGACTCAGGTAATATATAATCAGTTCTCTTTGTTTTCGTTACAATGTAGTTTCTGGATTTCTCACGATGTCAAAAATGCATATTAGAGGGACAGTTCAACGAGGGTTTCTACGAGCAAACTGAAGAGGGCACTCATTTTAGATCTGAGTATGAGATACGGAAAATGAA</genome_strand>
        <mrna_strand>ACGTTTCTCTCTCCTTCCTTTTTCCCGTCCGCCATCATTTTCTACTTCTCCGAAATCCTCCGTCACCGGGAAAAATAAGTTAACCGGAACCGAAAATGAGCGTCATCGACATTATCTTCAGAGTCGATACGATATGTAAGAAGTACGAAAAGTACGATGTCGAGAAGCATTCAGCTAATGATTCCCCCGGCGACGCCTTCGCTCGCCTTTATTCGTCCTTCGAATCTCAAATTGACGCTACTTCTGAG...............................................................................AAAGCAGAGATGGCTGCTATGGAAACTAACAGAGCTAAAGCGGTGGCTATGAAGGCGGAAGTACGACGAACAAAGGCTCGTTTAATGGATGAAATCAAAAAATTGCACAAACTTGCTCAGAAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAGGACTATCCCAAGAGGAACTGGAGACTCGTGGTGATTTGGTACATATGCTATCGGAGAGAATTCAGGCAATACCTGATGGAAGTATAAATGCAGCCAAAACAACAGGAGGTCGCGGGACTTCATCATTCAACAAAAATATAAAATTTGACTCAG..............................................................................AGGGACAGTTCAACGAGGGTTTCTACGAGCAAACTGAAGAGGGCTCTCATTTTAGATCTGAGTATGAGATGCGGAAAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326707" ref_strand="+" ref_description="SGN-U326707        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | fasciclin-like arabinogalactan-protein (FLA11) | chr5:752775-753656 REVERSE | Aliases: F15A17.200, F15A17_200(evalue: 2e-56, score=215) genbank/nr: gi|47717925|gb|AAT37954.1| fasciclin-like AGP 11 [Populus alba x Populus tremula] (evalue: 1e-59, score=232)">
      <seq>aagaactacatcatttccttcttgaattttttttatttttttttaaaaaaatgaaacaccaaattatttttttaattattatcatcctccaattttcaaccttaacactatctcaaacacccccttctggtccaacaaacatcacacaaatcctagaaaaagcaggccaattcacaacattaattagactaatgaaagtatcacaagttagtgatcaaatcaacacacaattaaacaattcaaatcaagggaatgggatgactatttttgcaccaacagataatgcattttctagcctaaaatcaggcacaataaatacactaagtgcacaacaacaagttcaattggtgcaatttcatgttttaccaaatttcatttcaatgtcacaatttcaaactattagtaaccctttgagaacacaagctggtgattctactcccggagacttcccgttaaacgtaacgacgtccggtaatcaagtcaatgtctctaccggagttgatgatgctactattgctaacacaatttatactgatggtcagcttgctgtttatcaggttgataaagtgcttcaacctatgagtatctttgctgctccggctccggcaatggcaccgactccggcaacgttgaaaccaaagagcaagtctccggcaggattgaaccctacctccggcaacgacgacttgccggcggcggatgaattccggtgttgagaggattgccatgcacggcacaacgggntttgttttttggaatttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="23975" stop="21484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23675" g_stop="23119" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23118" i_stop="21990" i_length="1129">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21989" g_stop="21784" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="765" r_length="208" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-U326707" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23675" e_stop="23119"/>
          <exon e_start="21989" e_stop="21784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACTACATCATTTCCTTCTTGAATTTTTTTTATTTTTTTTTAAAAAAATGAAACACCAAATTATTTTTTTAATTATTATCATCCTCCAATTTTCAACCTTAACACTATCTCAAACACCCCCTTCTGGTCCAACAAACATCACACAAATCCTAGAAAAAGCAGGCCAATTCACAACATTAATTAGACTAATGAAAGTATCACAAGTTAGTGATCAAATCAACACACAATTAAACAATTCAAATCAAGGGAATGGGATGACTATTTTTGCACCAACAGATAATGCATTTTCTAGCCTAAAATCAGGCACAATAAATACACTAAGTGCACAACAACAAGTTCAATTGGTGCAATTTCATGTTTTACCAAATTTCATTTCAATGTCACAATTTCAAACTATTAGTAACCCTTTGAGAACACAAGCTGGTGATTCTACTCCCGGAGACTTCCCGTTAAACGTAACGACGTCCGGTAATCAAGTCAATGTCTCTACCGGAGTTGATGATGCTACTATTGCTAACACAATTTATACTGATGGTCAGCTTGCTGTTTATCAGGTAATCGTTTTACGTTTATTTGGTACGATGAAAAATATTTTTTTTTTTTTATGAAAAATAACTTCTCTATGTTACATTATAAGGTAGGGGTAAACATGTAATGTTACGATTAGGGTTACACTGAATATTTTCTTTTCGTTGTTGTTGTTCATTGTGAGAAAATGTTTTAAATTTTGGGGATAGGTCATTTTTTCAATTGATTGAACTCTTAAATATTATTTTAATTATTTTCAAGATCGAATTGTAGTTTTTTCTTACGTAGTGGAAACGCCCTACAATTTGAAGTTTTACGCTTCAGGCAAGAAATGTTTTTCTTTTAAAAAAAAAACTAAAAGTTTGCTAATTAATATTATTGTTTTGGATCCTTGAAGAAATGTTTTAGAGGGAAATATTTTTTTGCTTACCAATCAAATACCGAGAAACATTCTACCGGCGAATTAATAGTTTCAGAAAATAAGCTATGTTGCTCGAATTTTTTAATAATGTCGACAGATATGCATCGAATCCTCTAAAGATAATGTATTTTTGAAGAAAACAAGTTATGTTGCTCGAATTTTTCAATAATATCGACAGATATGCATCGAATCCTCTAAAGATAGTGTATTTTTAAAAGATCTGATACGAATATAACAACCTTGTGAAGAGTTCGAGCAATTTAAATTTAATAGATTGTTTTTAAAATAATCTTTTTCTAATTCAATGTTGACAATTAGTCAAAGGGTACAAGTGAGTCAATAATACAAATAGAGGATGATTGTTGCAAAACAGGTTAATGAAGGGTATTTTAGACCTTTTACAATAGCTTCAGGGCATTTTTGCTTTTTTCCGTTGATAAAAACATATTAATTGGACGTTAATATCGATAGATATAAATTCTTTAAGATTTTGTTGGACGTTAATACCCTTTTAAAAAAAGAACTAATTTATCTTTTCACATTAATTGACATGCAAAGATGTAATATTATAATGAGAGTATGTATATATAAGAATTTTTACACCATTATATGGTCCTTAACAATTTTAGTAGGAGATAACATGTTTTATTTTCGAGATAAATTTTTTTGACATTTTATAAGAACGTATATTTGTAAATATTTTTTCGATGATCTAATAGTGTAATAATTATTAGGTTGATAAAGTGCTTCAACCTATGAGTATCTTTGCTGCTCCGGCTCCGGCAATGGCACCGACTCCGGCAACGTTGAAACCAAAGAGCAAGTCTCCGGCAGGATTGAACCCTACCTCCGGCAACGACGACTTGCCGGCGGCGGATG-ATTCCGGTGTTGAGAGGATTGCCATGCACGGCACAAC-GGTTTTGTTTTTTGGAATTTCTTT</genome_strand>
        <mrna_strand>AAGAACTACATCATTTCCTTCTTGAATTTTTTTTATTTTTTTTTAAAAAAATGAAACACCAAATTATTTTTTTAATTATTATCATCCTCCAATTTTCAACCTTAACACTATCTCAAACACCCCCTTCTGGTCCAACAAACATCACACAAATCCTAGAAAAAGCAGGCCAATTCACAACATTAATTAGACTAATGAAAGTATCACAAGTTAGTGATCAAATCAACACACAATTAAACAATTCAAATCAAGGGAATGGGATGACTATTTTTGCACCAACAGATAATGCATTTTCTAGCCTAAAATCAGGCACAATAAATACACTAAGTGCACAACAACAAGTTCAATTGGTGCAATTTCATGTTTTACCAAATTTCATTTCAATGTCACAATTTCAAACTATTAGTAACCCTTTGAGAACACAAGCTGGTGATTCTACTCCCGGAGACTTCCCGTTAAACGTAACGACGTCCGGTAATCAAGTCAATGTCTCTACCGGAGTTGATGATGCTACTATTGCTAACACAATTTATACTGATGGTCAGCTTGCTGTTTATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAAAGTGCTTCAACCTATGAGTATCTTTGCTGCTCCGGCTCCGGCAATGGCACCGACTCCGGCAACGTTGAAACCAAAGAGCAAGTCTCCGGCAGGATTGAACCCTACCTCCGGCAACGACGACTTGCCGGCGGCGGATGAATTCCGGTGTTGAGAGGATTGCCATGCACGGCACAACGGGNTTTGTTTTTTGGAATTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326839" ref_strand="+" ref_description="SGN-U326839        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: EMB2751 | ABC transporter family protein, ABC-type transport protein sll1623 -Synechocystis,PIR2:S74812 | chr4:16098140-16100218 REVERSE | Aliases: F17M5.220, F17M5_220, EMB2751, EMBRYO DEFECTIVE 2751(evalue: 4e-43, score=171) genbank/nr: gi|53791369|dbj|BAD52721.1| putative cobalt transport ATP-binding protein cbiO [Oryza sativa (japonica cultivar-group)] (evalue: 2e-43, score=179)">
      <seq>gggagagattagcctcatcccctcccctcttattagtattagtagttttttctgatttctacttaacataagcgtgattaaatttaaattcaagctaacaaagtttacatgaattgataaatgctttcgaacatgtgcactttatacggacggaaaatagtagttactaatcactaaactttgctagctacctttactacgatagcaataaagttttttcgtgtttcaatttatttgacactcttattccgaacaccttcacataaaaaacatcataatttactataattttctttaaaaattgttcaaaaaagaagccatagacaagcttggagtcaagttttttgttgggtaaaaatgatacaatctgtttgtgttcgagcttcagctctgccattgccacccattgattctcacagaaatgccgcaatggcaaacagttttgcaattgatgctcaaaatcttagctattcagttgtctcaaaacaaggaaaaatacttccaattcttaaagattgttcactacaagttccttctggacaattctggatgcttttgggacctaatggttgtggaaaatcaacccttttaaagatattagcaggtctattgagtccatatgatggtttcttgtatgtggagaggccaaggagctttgtgtatcagaatcctgatcatcaggtcgtgatgccaacagtggaagctgatgtcgcttttggtcttggtaaattgaacttaacaccaaatgagattaagactagggtggcaaaagctttggatgcagttgggatgtatgaatattttaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="30810" stop="27051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30509" g_stop="30091" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30090" i_stop="29994" i_length="97">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29993" g_stop="29819" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="594" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29818" i_stop="28966" i_length="853">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28965" g_stop="28879" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="681" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28878" i_stop="27477" i_length="1402">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27476" g_stop="27351" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="807" r_length="126" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-U326839" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30509" e_stop="30091"/>
          <exon e_start="29993" e_stop="29819"/>
          <exon e_start="28965" e_stop="28879"/>
          <exon e_start="27476" e_stop="27351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGAGATTAGCCTCATCCCCTCCCCTCTTATTAGTATTAGTAGTTTTTTCTGATTTCTACTTAACATAAGCGTGATTAAATTTAAATTCAAGCTAACAAAGTTTACATGAATTGATAAATGCTTTCGAACATGTGCACTTTATACGGACGGAAAATAGTAGTTACTAATCACTAAACTTTGCTAGCTACCTTTACTACGATAGCAATAAAGTTTTTTCGTGTTTCAATTTATTTGACACTCTTATTCCGAACACCTTCACATAAAAAACATCATAATTTACTATAATTTTCTTTAAAAATTGTTCAAAAAAGAAGCCATAGACAAGCTTGGAGTCAAGTTTTTTGTTGGGTAAAAATGATACAATCTGTTTGTGTTCGAGCTTCAGCTCTGCCATTGCCACCCATTGATTCTCACAGGCAATTTCTATTTCCTCACATTTGTGTTAATTTTTTTTTTTTTGGGGAAATACCCATTTTTTATTGATACCATAATTTGCTTACTATGTGTTTGTAGAAATGCCGCAATGGCAAACAGTTTTGCAATTGATGCTCAAAATCTTAGCTATTCAGTTGTCTCAAAACAAGGAAAAATACTTCCAATTCTTAAAGATTGTTCACTACAAGTTCCTTCTGGACAATTCTGGATGCTTTTGGGACCTAATGGTTGTGGAAAATCAACCCTTTTAAAGGTATATATATCTAGGACCATTGTTTTTTGGTTGTTAGTATGTTAGAATAGATACGAATGTGTGGAGGTCGAGGATTAGCTTAGAAGACTAGTAGTAGGTAATTTCGCCTTTTTTTAAACCAGCAGTTTTAGTATTATTTGGGAAGATGTGATTATACATGACATGTCGCAGTTGAAGGTTATCGAGTATATGACATATGGAGATTGTGGATTACATAGATTAAGTTAGAACTTAGAAGTATAGCTAGTGGTTTAGCTTTTTCTCGCTTATCCTTCCGTACTAGTAGTCGTAGTAATTTTCCTGTAGTTTCTTGTCCTTCGATATATGTTAGTTACTTTCTATTGTCTCTTGTACTTTGATCATCACACTATTTTATTGTAGTTTATTTTTTTTGTTTGTGATGCTTTTTATAGTATCTTCTTCGATATGTTTTTTCATGAGCAGAGGGTCTATTGGATAAAACTTCTCTACCTCCCAAGGTAGAGGTAAGGTCTGCTTACACTCTACCTTCCCGAGCCCCACTTTTGGTATTATATTTGGGTATTTTAATGTATTTTTGTTATTTTATTATTTTCGTATTTCTCATTCTTAGTTTTCTAATACTACTTGTTGTCTCTTATGCTTTGATTTTTTCTTACTATCTTGCTGTTGTTACTACTTATGTTTTCATCAATGTTGTGTTTATATTTTTGTTGCTCCGAGGGTCTATCAGAAACTACCTATTTACCTGCACAAGGTAAGGGTAAGGTTTGCCTACCCTCGCCAAACCCCACTTGTGGAATTACATTGGTATGTTGTTGTAGTTTGTCAGAATTAATGGGTTTTGTTCTTTTTTTGGGTGAAATTGTTTCAGATATTAGCAGGTCTATTGAGTCCAGATGATGGTTTCTTGTATGTGGAGAGGCCAAGGAGCTTTGTGTATCAGAATCCTGATCATCAGGTGTACTTACTTGAAGCAATTTTCAGTTTTTTCGTTTTAAGTTGCCTTTAGGCTTTAGAGGGTAATGCTGCCTAATTATCAGTCGTCTTCGGATTTGTGGCCCTCTTTTGTGGGTTAAATTGGATGATTAAGCGAGAATGTTTGGATTCCCGTGTTGTGCTGATGAATGAATTGTAAGATTAATGGTGTAAAATTCGAGATTCAAGATACTTATCACAACAACAACAACAACAACAACTTATACACCTCAATTCCAATCTAGTCTGCCAGCTATATAAATCTTCACTATCCATGTCACTCTATTTAAACTCGTCTCGATCCAATCTTTGAAAAAAAAAGGGATTCCTATCAAACCAATTCAATAACTGAGAATTGGAGTTTAATGGAATCACTGCGAATGCATGTAAAACACTAGGGGAACCTAAAGATGTTGCCTAATGGTCAATTAAGAGGGTGAAAACCACGGAAGATAAGTTCAAAAATGAGCATAGACCAAAAAGAAGGCCTAGGTGATCTTTTTTCCTTTGCTTAAGCCAACGAGTTACTAGGTACCTGTGATGGTGTGAAATAACATGTACCTAGTGAAATAGTCGAGATGCGTATAAGTTGGCTCAGACACTGACATTATCACAAAGAGAATGTAAATCATGAGTGAACTACAAAAGATTGAGTGCTTCATCTTGTATAAGCTTGATTTCATATCAGAGAATCAAGTCCCCTTGATAACTATCCTACTGATGTAATTATGCTTTTGGGTTTTCTTGCTTTTGTTGAACTATATCTCAGTCGAGTTTAGATTTGGAAAGATCATACTTTTGAAGAAATTAGGCAATTTGCCATCATAAGGACTAAAATGTCATTATAGAACTTCTATTGTAGCCCTGTAAGTAGGCAGAATCTGGAAAGTTCTTAACTTTATACATCCGTATTGCTGATTATACTGGTTTGTAACTCTGCATGTCCATTACTTTGGGTTGATAGTGCAGTTTATCCATCTTTGTAAAACCTCCAGAATATGTGGTTGCAAAGTCCTCATCATTTTAGCTTTGCACTCATGAGTCATTTAGTAGCACAAGTGTCTGTCATGATTCCAAACTCTGCATTTACTGATTCGAGAATGCGAATCTATAGAGTTTTTATTACATTGGCCCATTTATTTTTTGTATGGTAATTCTACAAGGCTTCTTATCATAGACTCACATGCTTTTGGCATGATGAGTTCACGAGGTCTCTGCAAAACAGATGTTGTGCTTGGTGCGGCTAAAGCAGAGAGCCACATATGCCGTTATTTGTTATGTTATTTTGCCTGGATCGCTGGATGGTTTTTATGAATTGGACTTTCCATGACCACATATTATTCTGCTCTGAAATGCATGGCCTTCTTTATTTTTTGTGTTTACAGGTCGTGATGCCAACAGTGGAAGCTGATGTCGCTTTTGGTCTTGGTAAATTGAACTTAACACCAAATGAGATTAAGACTAGGGTGGCAAAAGCTTTGGATGCAGTTGGGATGTATGAATATTTGAAA</genome_strand>
        <mrna_strand>GGGAGAGATTAGCCTCATCCCCTCCCCTCTTATTAGTATTAGTAGTTTTTTCTGATTTCTACTTAACATAAGCGTGATTAAATTTAAATTCAAGCTAACAAAGTTTACATGAATTGATAAATGCTTTCGAACATGTGCACTTTATACGGACGGAAAATAGTAGTTACTAATCACTAAACTTTGCTAGCTACCTTTACTACGATAGCAATAAAGTTTTTTCGTGTTTCAATTTATTTGACACTCTTATTCCGAACACCTTCACATAAAAAACATCATAATTTACTATAATTTTCTTTAAAAATTGTTCAAAAAAGAAGCCATAGACAAGCTTGGAGTCAAGTTTTTTGTTGGGTAAAAATGATACAATCTGTTTGTGTTCGAGCTTCAGCTCTGCCATTGCCACCCATTGATTCTCACAG.................................................................................................AAATGCCGCAATGGCAAACAGTTTTGCAATTGATGCTCAAAATCTTAGCTATTCAGTTGTCTCAAAACAAGGAAAAATACTTCCAATTCTTAAAGATTGTTCACTACAAGTTCCTTCTGGACAATTCTGGATGCTTTTGGGACCTAATGGTTGTGGAAAATCAACCCTTTTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAGCAGGTCTATTGAGTCCATATGATGGTTTCTTGTATGTGGAGAGGCCAAGGAGCTTTGTGTATCAGAATCCTGATCATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTGATGCCAACAGTGGAAGCTGATGTCGCTTTTGGTCTTGGTAAATTGAACTTAACACCAAATGAGATTAAGACTAGGGTGGCAAAAGCTTTGGATGCAGTTGGGATGTATGAATATTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337670" ref_strand="+" ref_description="SGN-U337670        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>atttcatagaagaatattattactctgtttttatacattttcttatataatacccagaaatggctaaaatgtttgcttgcttagtgttttgagccgacaatactaaatactctgtatttattttcattatataattcatatgtattgaaaaaaattcatcatcatcatcagtataaagccgtccagtactgcagaaaaatgatgaacaaaacgacgatgacaacgtcattaggataattaattttaatttttttatttttacattattagttgtcgtgtcgtctccggcttatgataacttcatcttcatccttaacaatttgtttcctttttcagttttcatacttttaagcaaacttctaaaagctgcaaaagcaaaaaaaaaaaaactcaaaaagctctgtttctaacaaagtattactctgaacattgttttgggtataaataatttggggttttttttttttttggaataagtgaaccgaaaattaaaaattttttgcccgaaaaaggaaaaaaaaaagggggttttttttaccaataaaaatgtaagggttgggagggttttttttcctttgttggggaaaaaccctttttccccctatgggaacaaataacccccggctttggttttttaccaaaaaaaaaaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="37718" stop="38902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38018" g_stop="38671" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-U337670" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38018" e_stop="38671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATAGAAGAATATTATTACTCTGTTTTTATACATTTTCTTATATAATACCCAGAAATGGCTAAAATGTTTGCTTGCTTAGTGTTTTGAGCCGACAATACTAAATACTCTGTATTTATTTTCATTATATAATTCATATGTATTGAAAAAAATTCATCATCATCATCAGTATAAAGCCGTCCAGTACTGCAGAAAAATGATGAACAAAACGACGATGACAACGTCATTAGGATAATTAATTTTAATTTTTTTATTTTTACATTATTAGTTGTCGTGTCGTCTCCGGCTTATGATAACTTCATCTTCATCCTTAACAATTTGTTTCCTTTTTCAGTTTTCATACTTTTAAGCAAACTTCTAAAAGCTGCAAAAGCAAAAAAAAAAAAACTCAAAAAGCTCTGTTTCTAACAGAGTATTACTCTGTACATTGTTTTGGGTATAAATAATTTTGGGTTTTTTTTTTTTTTGTATTAGTTGATCGGAAAATTGAAGATTTTTGGCCGGAAAATGG-AAAGAAGAAGTGGGTATTGTTTATCAGTTATAATGTTAGTGTTTGGAGTGGTTTTCTTGCATTGTTTGGTGATGACGTCATTTGCCGCTAATGTGACGTATGATCACCGGGCATTGGTTGTTGACGGAAGGAGAAGAGTTT</genome_strand>
        <mrna_strand>ATTTCATAGAAGAATATTATTACTCTGTTTTTATACATTTTCTTATATAATACCCAGAAATGGCTAAAATGTTTGCTTGCTTAGTGTTTTGAGCCGACAATACTAAATACTCTGTATTTATTTTCATTATATAATTCATATGTATTGAAAAAAATTCATCATCATCATCAGTATAAAGCCGTCCAGTACTGCAGAAAAATGATGAACAAAACGACGATGACAACGTCATTAGGATAATTAATTTTAATTTTTTTATTTTTACATTATTAGTTGTCGTGTCGTCTCCGGCTTATGATAACTTCATCTTCATCCTTAACAATTTGTTTCCTTTTTCAGTTTTCATACTTTTAAGCAAACTTCTAAAAGCTGCAAAAGCAAAAAAAAAAAAACTCAAAAAGCTCTGTTTCTAACAAAGTATTACTCTGAACATTGTTTTGGGTATAAATAATTTGGGGTTTTTTTTTTTTTTGGAATAAGTGAACCGAAAATTAAAAATTTTTTGCCCGAAAAAGGAAAAAAAAAAGGGGGTTTTTTTTACCAATAAAAATGTAAGGGTTGGGAG-GGTTTTTTTTCCTTTGTTGGGGAAAAACCCTTTTTCCCCCTATGGGAACAAATAACCCCCGGCTTTGGTTTTTTACCAAAAAAAAAAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328864" ref_strand="+" ref_description="SGN-U328864        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | beta-galactosidase, putative / lactase, putative, similar to Beta-galactosidase precursor SP:P48980 from (Lycopersicon esculentum) | chr2:12175930-12180647 REVERSE | Aliases: T17D12.3, T17D12_3(evalue: 5e-161, score=563) genbank/nr: gi|7939623|gb|AAF70824.1| putative beta-galactosidase [Lycopersicon esculentum](evalue: 0, score=682)">
      <seq>cttttgatctccggttcaatacattatcctcggagtactcctgatatgtggccagaccctatacagaaatcaaaagatggaggattggatgttatagagacttatgttttctggaaccttcatgaacctgttcgaaatcagtatgattttgaaggaaggaaagatttgattaattttgtgaagttggtggagaaagctggcttatttgttcatataaggattgggccttatgtttgtgcagaatggaactatggtgggtttcctctttggttgcatttcattcctggaattgaatttcgaaccgacaatgaaccgttcaaggcagaaatgaagcgattcacagctaaaattgttgacatgatcaagcaagaaaatctatatgcatcccagggtgggccggttatcttgtctcagatagaaaatgagtatggcaatggtgatattgagtctcgttatggtcctcgtgccaaaccttacgtgaactgggcagcatcaatggctacgtctttaaatacgggagtgccatgggttatgtgtcagcaaccagatgcccctccttccgttattaacacttgcaatggattttattgtgaccaattcaagcaaaattccgataaaacacccaagatgtggactgagaattggaccggatggtttctgtcgtttggtggtcctgtcccttacagaccagtggaagacatcgctttcgctgtggctcgatttttccagcgaggcggaactttccagaactattacatgtaccacgggggaactaactttgggagaaccagtggtggaccgtttattgcaactagctatgactatgatgctcctttagatgagtacgggcttataaatcaaccaaaatggggtcacttgaaagatctccataaagccataaagctttgtgaggctgcaatggtggcaacagaaccaaacatcacttctctgggctctaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="38369" stop="41536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38668" g_stop="38712" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38713" i_stop="38788" i_length="76">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38789" g_stop="38884" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="141" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38885" i_stop="39691" i_length="807">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.698" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39692" g_stop="39804" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="254" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39805" i_stop="39894" i_length="90">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39895" g_stop="39961" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="321" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39962" i_stop="40042" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40043" g_stop="40135" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="414" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40136" i_stop="40243" i_length="108">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40244" g_stop="40393" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="564" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="40394" i_stop="40539" i_length="146">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.002" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40540" g_stop="40628" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="653" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40629" i_stop="40737" i_length="109">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="40738" g_stop="40843" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="759" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="40844" i_stop="40939" i_length="96">
            <donor d_prob="0.738" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="40940" g_stop="41027" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="760" r_stop="847" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="41028" i_stop="41121" i_length="94">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="41122" g_stop="41236" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="848" r_stop="962" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-U328864" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>962</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38668" e_stop="38712"/>
          <exon e_start="38789" e_stop="38884"/>
          <exon e_start="39692" e_stop="39804"/>
          <exon e_start="39895" e_stop="39961"/>
          <exon e_start="40043" e_stop="40135"/>
          <exon e_start="40244" e_stop="40393"/>
          <exon e_start="40540" e_stop="40628"/>
          <exon e_start="40738" e_stop="40843"/>
          <exon e_start="40940" e_stop="41027"/>
          <exon e_start="41122" e_stop="41236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGATCTCCGGTTCAATACATTATCCTCGGAGTACTCCTGATGTGAGTTTCTACTTTTTTTTTCCTCAAAATTTTTTAAAAAAATGTTTTTTTTAATCTAGTGTTTGTGATAATGCAGATGTGGCCAGACCTTATACAGAAATCAAAAGATGGAGGATTGGATGTTATAGAGACTTATGTTTTCTGGAACCTTCATGAACCTGTTCGAAATCAGGTAAAGCTTTGTTGTTGATCGGGATAAGGTCTGTGTACACACTGTCCTCCCTAGACACTACTTGGGATTATAGTGGATTGTTGTTGTTGTTGTAGTTGACTCTGGGGTGGAGCTAGGCGAGGCCAAGGGATTCATATGAACTCTCGTTGGGTGAAGAATTATACTGTTTATATATGATTAAAATGATGTTTTTAGGTATATGTAGTAGGTGTTGAACCTTGTTTGGCTTCTTCATAGGTTTACTTAGTCATATTTTGAACCGCTTTAGTGAAAATCTGTTCGATAATCTTCAACTCCTGACTTCGACTATGAGTGTTGTTGCAATTCTTTGCTTCAGTTATGGGCCAAGAATAGGAAAGAATGGAAATGTTCCTTCTTTTAGTGTTTCTTATGTTGAGTGTCTAGAAGTTTTGGATTGAGCAAATAAAGTAATGAGTTGTTTTCCTTTTTATAAAATTAGAAATCTTGAGCTAGACAAAAAATGAGTACGGAAAGTTCCCATTTTTACCTATGTTGCTCTGATTTTCCAAAAATGTTGTCGCACCTGGCTAGGATCCTCAGAAAATGCACAACTTTTGGAGGATCCTATTGCACCAACCGCATTTTTGAAGAATCCAACATAGATTTTTGCTGTTTCGAGTTCCAAGAACTTGATTGAACTAATAAAGTAATGAGGTTGTTTTCGTTTTAGTAAGTATCAAATCTTGAGCTAGACAAATTTGATTGAAATACTTGAGAATTCCATTTTGAGTGATGTGATGAACACGACGAAAAATGGAAGAACTGATGCGATGAAAACATTTGCAGTATGATTTTGAAGGAAGGAAAGATTTGATTAATTTTGTGAAGTTGGTGGAGAAAGCTGGCTTATTTGTTCATATAAGGATTGGGCCTTATGTTTGTGCAGAATGGAACTATGGGTAACTAACTCTTATACTTTTTTTGCTTTTCTCAAATATTAATGTTTTTGCTTTACTGATAATTGATGGTTTTGATCTATTTTGAGACAGTGGGTTTCCTCTTTGGTTGCATTTCATTCCTGGAATTGAATTTCGAACCGACAATGAACCGTTCAAGGTATTCCCATTTGTGCTATTAATTAGTTTTTCCTTGGGATACTGGTTTTGGAGTTCATGACACGAGGGATTTGTGTTGCAGGCAGAAATGAAGCGATTCACAGCTAAAATTGTTGACATGATCAAGCAAGAAAATCTATATGCATCCCAGGGTGGGCCGGTTATCTTGTCTCAGGTTAGCATCTTGTAGTGATTCACTACATTCGGAGTACTAAGAAACAAGTTGATATTAGTTGCTCTTTGTTATTGTTTGAGTAGTAAAGATGCTTTGTTGACCAAACAGATAGAAAATGAGTATGGCAATGGTGATATTGAGTCTCGTTATGGTCCTCGTGCCAAACCTTACGTGAACTGGGCAGCATCAATGGCTACGTCTTTAAATACGGGAGTGCCATGGGTTATGTGTCAGCAACCAGATGCCCCTCCTTCCGTTGTGAGTTTCTCATATATCACCTTGTGTTTAAGTGATTGAAAAAAACACCTTGAGAACCCCTGTAGACTATCCAACTTTTCTGACAATTAATACAGATTGCCACTAAGGTAATTGTTAACTTTCTGCGTGTGCTGAGATAATGACAGATTAACACTTGCAATGGATTTTATTGTGACCAATTCAAGCAAAATTCCGATAAAACACCCAAGATGTGGACTGAGAATTGGACCGGATGGTAGGCATTTGGATTTTTAGTTCTTTAATAAACAGATCATATTTGGTGCTATTCAAAATATCCCAAGTTTCTCTTACAATTCCACCTTTTTGAATTGTTTGGAACATAGGTTTCTGTCGTTTGGTGGTCCTGTCCCTTACAGACCAGTGGAAGACATCGCTTTCGCTGTGGCTCGATTTTTCCAGCGAGGCGGAACTTTCCAGAACTATTACATGGTACTCTATGAGTTTCTTGATTTATAGTTCCCTGCCTACAGAGACAGTTGACAGCTGAACTATGTCTTATAAATGATATTTACTGCTTCCGGACAGTACCACGGGGGAACTAACTTTGGGAGAACCAGTGGTGGACCGTTTATTGCAACTAGCTATGACTATGATGCTCCTTTAGATGAGTACGGTATGGTTCCTCACCCTCTTGACCAATCTTTATTTTCCTAGCTTGTTGTGGGCTTATCATTTCACTAGGTGAAAATCTCCATTGCGAAATGCAGGGCTTATAAATCAACCAAAATGGGGTCACTTGAAAGATCTCCATAAAGCCATAAAGCTTTGTGAGGCTGCAATGGTGGCAACAGAACCAAACATCACTTCTCTGGGCTCTAATAT</genome_strand>
        <mrna_strand>CTTTTGATCTCCGGTTCAATACATTATCCTCGGAGTACTCCTGAT............................................................................ATGTGGCCAGACCCTATACAGAAATCAAAAGATGGAGGATTGGATGTTATAGAGACTTATGTTTTCTGGAACCTTCATGAACCTGTTCGAAATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGATTTTGAAGGAAGGAAAGATTTGATTAATTTTGTGAAGTTGGTGGAGAAAGCTGGCTTATTTGTTCATATAAGGATTGGGCCTTATGTTTGTGCAGAATGGAACTATGG..........................................................................................TGGGTTTCCTCTTTGGTTGCATTTCATTCCTGGAATTGAATTTCGAACCGACAATGAACCGTTCAAG.................................................................................GCAGAAATGAAGCGATTCACAGCTAAAATTGTTGACATGATCAAGCAAGAAAATCTATATGCATCCCAGGGTGGGCCGGTTATCTTGTCTCAG............................................................................................................ATAGAAAATGAGTATGGCAATGGTGATATTGAGTCTCGTTATGGTCCTCGTGCCAAACCTTACGTGAACTGGGCAGCATCAATGGCTACGTCTTTAAATACGGGAGTGCCATGGGTTATGTGTCAGCAACCAGATGCCCCTCCTTCCGTT..................................................................................................................................................ATTAACACTTGCAATGGATTTTATTGTGACCAATTCAAGCAAAATTCCGATAAAACACCCAAGATGTGGACTGAGAATTGGACCGGATG.............................................................................................................GTTTCTGTCGTTTGGTGGTCCTGTCCCTTACAGACCAGTGGAAGACATCGCTTTCGCTGTGGCTCGATTTTTCCAGCGAGGCGGAACTTTCCAGAACTATTACATG................................................................................................TACCACGGGGGAACTAACTTTGGGAGAACCAGTGGTGGACCGTTTATTGCAACTAGCTATGACTATGATGCTCCTTTAGATGAGTACG..............................................................................................GGCTTATAAATCAACCAAAATGGGGTCACTTGAAAGATCTCCATAAAGCCATAAAGCTTTGTGAGGCTGCAATGGTGGCAACAGAACCAAACATCACTTCTCTGGGCTCTAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319056" ref_strand="+" ref_description="SGN-U319056        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: | Symbol: None | beta-galactosidase, putative / lactase, putative, similar to Beta-galactosidase precursor SP:P48980 from (Lycopersicon esculentum) | chr2:12175930-12180647 REVERSE | Aliases: T17D12.3, T17D12_3(evalue: 9e-179, score=623) genbank/nr: gi|7939623|gb|AAF70824.1| putative beta-galactosidase [Lycopersicon esculentum](evalue: 0, score=967)">
      <seq>taatatagaggtcagtgtttataaaactgattcacagtgtgctgcatttctcgccaatactgctacgcaatctgatgcggctgtgagcttcaatggaaactcatatcatttacctccatggtccgtcagcattttacctgactgcaagaatgttgcttttagtactgcaaagattaattctgcatcaaccatctcaacatttgttactcggtcttcggaagctgatgcatctggtggatccctatcaggttggacttcggtgaatgagcctgtaggcatctcaaatgaaaatgcattcacgagaatggggttgttggaacagataaatactacagctgataaaagcgattatctctggtactccctgagtgtcaatataaaaaatgatgagcctttccttcaagatggatctgcaacggtacttcatgtgaaaacacttggccatgttcttcatgcttatattaatggaaagctatcaggaagtggaaaaggcaacagtagacattctaactttacaattgaagttccagtcacacttgtgcctggagaaaacaaaattgacctgttgagtgcgactgtgggacttcagaactatggagcattctttgatctcaagggagcagggattacgggtccagtgcaattgaaaggtttcaaaaatggctctactactgatctttcatcaaagcagtggacatatcaggttggattgaaaggagaagatttgggcttatctaatggaggttctacactttggaagtcacaaactgcattgcctacaaaccaaccattaatatggtataaggcaagttttgatgctcctgctggtgatacccctctttcgatggattttactggaatggggaagggtgaggcatgggtgaatgggcaaagcatcggtcgattttggcctgcctatattgcaccgaatgacggttgtactgacccctgcaattatagaggaggatacaatgctgaaaaatgtctcaaaaattgtggaaaaccatcccagctgctataccacgttcctcgttcatggctgaaatccagtggaaatgtcttggtgttgtttgaggaaatgggcggggatcctacgaagctgtcttttgcaacaagagagatacaaagtgtatgctcaagaatatctgatgctcatccacttcctattgatatgtgggcttcggaagacgatgcacgaaaaaagtcagggccaactctatctcttgagtgccctcatcctaatcaagtcatctcatcaatcaaatttgcaagctttggcactcctcaaggaacatgcgggagctttatccatggtcgatgcagtagcagcaatgctctttcaattgtaaagaaggcttgcattggatcaaaaagctgtagtcttggagtttcaataaatgcatttggtgatccatgtaaaggagtcgcaaaaagtttagctgtagaagcttcttgtacatgatgcctcacgaaactaatgaaccgagaaggcacgttccttaagtgttaaagtagtataaggtcagataaaccattactaagttacagcttcagaaagatagtgcttagctacatatacatcatggagaggaagaccactttggcttccctcaccgatttgatgaaattataataaaagaaaactagcttcaataaaaaaaaaaaaaaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="41405" stop="107347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41707" g_stop="41868" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="172" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41869" i_stop="41954" i_length="86">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41955" g_stop="42151" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="369" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42152" i_stop="42310" i_length="159">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42420" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="479" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42421" i_stop="42697" i_length="277">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42698" g_stop="42807" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="589" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42808" i_stop="42971" i_length="164">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42972" g_stop="43085" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="703" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43086" i_stop="43237" i_length="152">
            <donor d_prob="0.815" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43238" g_stop="43339" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="805" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="43340" i_stop="43948" i_length="609">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="43949" g_stop="44160" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="806" r_stop="1017" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="44161" i_stop="44278" i_length="118">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="44279" g_stop="44615" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1018" r_stop="1354" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="44616" i_stop="44951" i_length="336">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="44952" g_stop="45252" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1355" r_stop="1655" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="45253" i_stop="47884" i_length="2632">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="47885" g_stop="47921" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1656" r_stop="1692" r_length="37" r_score="0.622"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="47922" i_stop="48889" i_length="968">
            <donor d_prob="0.762" d_score="0.00"/>
            <acceptor a_prob="0.739" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="48890" g_stop="48907" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1693" r_stop="1710" r_length="18" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-U319056" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1700</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41707" e_stop="41868"/>
          <exon e_start="41955" e_stop="42151"/>
          <exon e_start="42311" e_stop="42420"/>
          <exon e_start="42698" e_stop="42807"/>
          <exon e_start="42972" e_stop="43085"/>
          <exon e_start="43238" e_stop="43339"/>
          <exon e_start="43949" e_stop="44160"/>
          <exon e_start="44279" e_stop="44615"/>
          <exon e_start="44952" e_stop="45252"/>
          <exon e_start="47885" e_stop="47921"/>
          <exon e_start="48890" e_stop="48907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGTGTTTATAAAACTGATTCACAGTGTGCTGCATTTCTCGCCAATACTGCTACGCAATCTGATGCGGCTGTGAGCTTCAATGGAAACTCATATCATTTACCTCCATGGTCCGTCAGCATTTTACCTGACTGCAAGAATGTTGCTTTTAGTACTGCAAAGGTTTGGCTCATAATCTTGTCTAGTTTGAATCATAGATATGTGCTTGTTGCAGCTCAATCTAATGGTTTTACATTTCTCTGTGACAGATTAATTCTGCATCAACCATCTCAACATTTGTTACTCGGTCTTCGGAAGCTGATGCATCTGGTGGATCCCTATCAGGTTGGACTTCGGTGAATGAGCCTGTAGGCATCTCAAATGAAAATGCATTCACGAGAATGGGGTTGTTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAGGTAAAAACAGAAAAACATTACATCTAATTGCATCAGCTCCACTTTTTATGGTTTCTAATCAGCAGCATTTTATGAGAATAAGTAGGGTTCTCCGACTGCATGCATGATCGTTATCTGCTCTGAAGTTCACTTTTCTTACATCAATTCTAATTTTTCCAGTGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGTTCTTCATGCTTATATTAATGGAAAGCTATCAGGTAACGGAAATCAATGACACTTGATGACTACCTACTAGTTACCCGAAACAATGAGAAGATACTGTCTTGAGCTATTTAAGTTTACTGCAATGATTTATAGTAAGATTATTCAAGATGTCAAAGCAAAAGAAGTAGCCGAAGCATATTAAGTGGTGATATTGTATTTAGCATTTCTCTTGGTTGACGAAAGCATCAGATAATTCATCCTTGTTGGAACTATACATAGTTGTTCTTACAATGCTTAACATTTTTGCGTAAACTTTGTGATTGTTTGTAGGAAGTGGAAAAGGCAACAGTAGACATTCTAACTTTACAATTGAAGTTCCAGTCACACTTGTGCCTGGAGAAAACAAAATTGACCTGTTGAGTGCGACTGTGGGACTTCAGGTTTGAATTTTGGTTAATCCCATCATTTCATATCGAAGATTTGTTATCTGCCATATATTCTTTTGGTCCTTCAGTATTAATTTGTATCATCTATGAAGAACTTCACATTGTTATAAATTCCATTTTAGAAGCATGATCTAATGCACACCTGATATTGACTCCAGAACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATATCAGGTTAAGTTAATAGGTCCATAGGATTTCATTCCATTTTCGATCATTCATTTCCTTCTATATTTTGGACAAAATCTCTGGTAGCATAAGGTCTTTATTCTGAAGGATAATCACATTACATTGACGTTGCCTGTCATGTGTACTTTGTTGGTCAGGTTGGATTGAAAGGAGAAGATTTGGGCTTATCTAATGGAGGTTCTACACTTTGGAAGTCACAAACTGCATTGCCTACAAACCAACCATTAATATGGTATAAGGTAATATTCGTCTCAGATATGTGCAATTTAAGGATAAATGTGAACATTTTGACATTTGCTCTTTTGATATGCTCTTCCTTGAGTTGAGGGTCTACCGGAAGAAGCCTCTCTACCTCCCGAGGTAGGGGCAACGTCTACGTATACTCTACCCTCCCCAGACCCCACTTGTGAGTTTTACGCTGGGTATGTTGTTGTTGCACATCAGTTATGTAACCTTGTTTGAAGATTTTATTTGATGGAATAAATAGGCTACAAATGTTCCAGACAGATTTGCTAACAGAATCAGAATGGATTGGCCAAAGTTCCTAATGTTTACAAGTTATAATAGGCTAATGTTGATGAACTCAAATCAAAAGAACACACCATGGAGCAATATTATCAAAATGCTCGTTTCATCTGCTCGTATATTTTACTTGAAAGTAGGTTAACAATAAAAGAACTAGGGATTCTTTTCATGACAGTTGGTCTGGTATGTTAGCAATATGCCTCTTATAATGGACTGATATATCTTATTCTTTGTATGTTCATGTACCTGTATCTATCCTAAGGTAACAAATGTCCAAATCTTTTGATCAGTCGATAACTGAACTAGAACTTTTGTTCATTTAGGCAAGTTTTGATGCTCCTGCTGGTGATACCCCTCTTTCGATGGATTTTACTGGAATGGGGAAGGGTGAGGCATGGGTGAATGGGCAAAGCATCGGTCGATTTTGGCCTGCCTATATTGCACCGAATGACGGTTGTACTGACCCCTGCAATTATAGAGGAGGATACAATGCTGAAAAATGTCTCAAAAATTGTGGAAAACCATCCCAGCTGCTGTAAGTATTTAGGACATCTCAAGTATTTAAAAGTTTTCAGAGTATCTGGTGAAATGTTTTGGTATGTCAATCCTAGTTAAGAAATTTTGAATGTAACATTTGTATATAAACTTTGTAGATACCACGTTCCTCGTTCATGGCTGAAATCCAGTGGAAATGTCTTGGTGTTGTTTGAGGAAATGGGCGGGGATCCTACGAAGCTGTCTTTTGCAACAAGAGAGATACAAAGTGTATGCTCAAGAATATCTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAGGTTAGATCCATTTTATTTGATCTTAAGTATCCTAGTTTTTTGAGTTTCATGCCTGTATTATCAGGTGTGTGAGTTTTAAACTAAACTATCACCAAATATTTATCGAAACACACCTCAACTATTAGTTGTTCTCTTTTCCTACCTGAACGGTGGTGATAGTCCAGGTAGGAAAAGGGGGCAACTGATAGTTGAAGTGTGTTTTGAGAAATAGTTGATGATCATTCAAGTAGGAAAAGTGAACATCTAATAGTCCGAGTGGGAAACTCAAAATAACTGGGATACTTTAAGTGTGTTTTTGACCTGTCACTCTATAAAAGAATTCAACCATCTTTGCAGGCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTACTAAGTTACAGCTTCAGAAAGATAGTGCTTAGCTACATATACATCATGGAGAGGAAGACCACTTTGGCTTCCCTCACCGATTTGATGAAATTATAATAAAAGAAAACTAGCTTCAATACTTTTGCTTTGCTCTCCAACTTGATGAGATTATAGTTTAGAAAAAAGTTGCCTCATGGATGTTTTAATCAAGCAGAGTATAAGTCACATTAATAGATTGATGTATCATAGTAAACTCGAAAATTTCTTCGTAATTTTCGCATCCTTTATTCACATATTTAGTAACACATCCAAATACAATCAGATAAATAGCAATATTTTAGTCAATACACAATACACTTATTGGTTAATATCTTTATCAAGATTATCAAGCTGAGGCCACACTTGAGGGTCTTTGGAACCTGCAATTCTTGCAGATAGCTGAATGGAGTGATGGTGTCTGATACTTGTCTTCTCCGCCCATGATTGGCATCGGCACCCCTCTCTTGACTGGACTAACATATCCCGGCTGGTAAGTCTTGCCAAGAATTCCTTCGACGTCTTTAGATAGATTGAAAAACTTAAATTGTGTCTCTAAGTGAGCAAAAGCATCATCTGCTGGTAGCTGATAGTTGTGAACCTTGTTTTCTTTTTCTCCAATGGGGACTACCTTCACATCTAATTGCAACAGTCCAGAAACTGTGACCCTCACGCTGTTAAGATCATCTGTCCTTTCGACCACGACTGATCTCTCAGCAGTGTTAACACTCCATTCTACATCTCCATCTGTTGGGACATTAACTGTCTCACCATTCCACTGTACAATAAGAGCATCAACCTTATCATCCCAATGTGACACTTCCGTTGCTCCTACGACTAATGTATGGGTGTCAAACATGACTGACAATGTTTGCACCCATGTATAGTCGCGCTTCCTTCCCTGTGGTCGTGTCCCTATTAGATGTGCATTAATGTGGAGGTTGTCATCTGAAACAATGGCAAAGTCGGTTTCCTTTGCTCCGTGGAAGTAGAACATCACCCCGTCACCACCCACAAATCTTGGATCGTAGCATAGAGCACCATAACCATCACACCTAGGTAGTCTCCCTGTCAAAGAAGTGAAACAACAAAACTTTGAGTTCATTTAGAGAGTCGTCAAGAAAACAGTGTCATTTGACAGTATCAAGTTTTTCCTACAGTATACTCGAGTTGTTTCATACGTTCATTTAGACAGACTTTACACTCCGTGCATTGACGGTGTAAAAATGGTGACTAACTTGCTACCACACCGTTAAAATGCATAGATAGGCTATGTTGCTCAAACTCTTCAAAAGGTTATAGGTGCATGTCGGAGCACTATTTTTTGAAGATCCGACAGGTGTGGTGCGGTAGTGTGATGCTTGAGAAGCCTACTTGTATTACACTAGTATCTCTTGCAAAACTAGAAGATATGTAATACTCCCTCCTTTTCAGTTTGTTTTGACTTGGCACGGAGTTTAAGAAAGCAAAAAAGACTTAGATTTTGTGGTCTAAAACTACAGAGAGTGAGTATATAATGCTTACACTTGCAAGTTGCTTCACACTTGCTGCTGCAATCAATATAGCATCCCTTCTGCTTCTTGTTCTGTTTAGGCTTCCTTTGAGGACACTCTGTTGGACAGGTAAGAGTTCTGTAGTAACAAACTCCCTGAACGGTGCAGAACGCACGTTCTTGCCCCGTACCTGGTAATGGATCCAACACATTATAACCGGGATCCGTAGCAACTGCATTCACCTCCTTACCTTTGCCTTCTGGTTGATCAGCAATGGTTACTTGTGAAAAGATGGATAAGAGGAGCAGAGCTGCTATTAAGCACAAGTTTCTCTTATCCATCTCTACTATGACTGTTGTTGATATATTTTTTCTGTTTTTTGTTTGTTTGTTTGCTATTTAGACAGAAAATAAACACTTATTGCATGGAACAAGAGTTCATAGGGTTGTTATATATATGTTTAGATATTGGTGTTGGGACTTAAAGTAAGGCTTAAATCATGGGGTTTTTTTTAGCTTCATGCACATGATGAAACTACTAATGTTGCACAATTTGCAATGTGGTATGAGTTTGACCAAATGAATGGTGGATATAGATATAATTAACACAGGGTTAACATAGGCGTATTTAGGATTTAAGCTCTATGAGGTCGTGATTTCAGTAGATTTTTTCATATAAATTTATGTTACGCGTTGAAAGTAATATTAGTTCAGATGAACCCACAGCTAAATGATTGCATCCGCCCATGGTAAGTTATGGTTTTGTTTGGCATTAAATTTTCCATGTCTTATTGGAGATTCAGAAAAGTATTTGAAAACATTCATACACATAATGCGAATTGTTAATTTCTATCCCTGAATTATTGACAGCTTTAAAAATATTCATTTACTTGACTAACTGAATTTAAATACACGCCCGATTTCGCAAGATGAGTGAAATAGACCTCTAAATTCTCGTCAAGTTTAGGAGTGTTTCCAACACTTTTTTCGATTTTTTTATTAAGTGTCACATGCTCCTACAAAAATTTGAGACCACTTGCTATGTCTTGTGGAAGATCGGGGTGTGTCTAAGTTTAGCTAGTCAAGTAGAGGAGTGTTTTTAAGACTGACAATAGTTCGAGGACGAAACTAATAATTTGAGCCAAATTTAGGGGTGTTTTCAATACTTTATCTCTCTTGTAAATATATACTCTGATCTCTCCCATTCATTTTACTTGTCATATTTTTCTTCGACATGTCCCTTAAGAAAAAATTCAACTAAAAGAAAATTAACAATTACGGTAATATTCTTGATCTTTTAGAATGACAATTATTTTAATTTGGATCAGTTAGTTTTAGTAAGCACGATAACTAGAATGGATCCGAGGGAGTATTAGAGGTCAAATGTTATAGATTATAATTATTTATATATTTCAAATAGAACATTGTTTTGAATGTGAAACTTCTATTTTTCTTATGCAAGCATTCAAATAAAACTTTATTGTATAAAGGTTCTAAATTAGAGAAGAAAAATAAGTAACATACAAGAGTTCATTTGAAGACAAATCTTTGACTATGGAAACATTCTAAAAACTTGTTTATGCAATGGCCAGCACTTTGCTTAATGTACAATTGTTCAATAATACCTTTGTGCTTTTAGTGATTGTGACATTGTGATTGAGTGATAAGTATTCATTTATTTTTAATCAGAACTTTTCAGTTTGAATTTTGAGAATGAAGTTATCTGTTAGTGAATAGTTCTAGCATAGGGTTTTAAAGTTCGAAGCTTTGATAACTCGAACTCTAACACAAAATGTGATTGAGTTCGAAAAATTTCATGGAGTTATAAATGTAGTTCAAACTCTTTTTGAAATTTTTGGAGTTAAAATCGCAAAATATTCAAACTTTAGATTTTAAAATGGAGATTTTTCATGTTATAATTACTGTATTTTTGTCTAAAGTTTATTTTCACGTTAACGAACCACTAAATATAGCAAATTTGTGTATTGAATCTAAAATTCTAATCAACGACTCGAAAAGTGAAATTTGCCACCTTTCTTTCTCCTGCCTCACCGATTTAACCAGATTAATAAATTTCAAATATCAAATAATTAAACTAATAAATAAATAAAAATTATTTATTTTTAAGCCGATCACGTATTTTCTAAATGGGAAAAAAATTTAAAGTAAAAAAACAATATTGTGCTCTGATGGAAAATAAAAATTGTTAAAGTAATAATAAATAAATAATTTTCTTGAATGTCAAAAGGAAAAAAAAAAACTTAAA</genome_strand>
        <mrna_strand>GTCAGTGTTTATAAAACTGATTCACAGTGTGCTGCATTTCTCGCCAATACTGCTACGCAATCTGATGCGGCTGTGAGCTTCAATGGAAACTCATATCATTTACCTCCATGGTCCGTCAGCATTTTACCTGACTGCAAGAATGTTGCTTTTAGTACTGCAAAG......................................................................................ATTAATTCTGCATCAACCATCTCAACATTTGTTACTCGGTCTTCGGAAGCTGATGCATCTGGTGGATCCCTATCAGGTTGGACTTCGGTGAATGAGCCTGTAGGCATCTCAAATGAAAATGCATTCACGAGAATGGGGTTGTTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAG...............................................................................................................................................................TGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGTTCTTCATGCTTATATTAATGGAAAGCTATCAG.....................................................................................................................................................................................................................................................................................GAAGTGGAAAAGGCAACAGTAGACATTCTAACTTTACAATTGAAGTTCCAGTCACACTTGTGCCTGGAGAAAACAAAATTGACCTGTTGAGTGCGACTGTGGGACTTCAG....................................................................................................................................................................AACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATATCAG........................................................................................................................................................GTTGGATTGAAAGGAGAAGATTTGGGCTTATCTAATGGAGGTTCTACACTTTGGAAGTCACAAACTGCATTGCCTACAAACCAACCATTAATATGGTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTTTTGATGCTCCTGCTGGTGATACCCCTCTTTCGATGGATTTTACTGGAATGGGGAAGGGTGAGGCATGGGTGAATGGGCAAAGCATCGGTCGATTTTGGCCTGCCTATATTGCACCGAATGACGGTTGTACTGACCCCTGCAATTATAGAGGAGGATACAATGCTGAAAAATGTCTCAAAAATTGTGGAAAACCATCCCAGCTGCT......................................................................................................................ATACCACGTTCCTCGTTCATGGCTGAAATCCAGTGGAAATGTCTTGGTGTTGTTTGAGGAAATGGGCGGGGATCCTACGAAGCTGTCTTTTGCAACAAGAGAGATACAAAGTGTATGCTCAAGAATATCTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAG................................................................................................................................................................................................................................................................................................................................................GCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTACTAAGTTACAGCTTCAGAAAGATAGTGCTTAGCTACATATACATCATGGAGAGGAAGACCACTTTGGCTTCCCTCACCGATTTGATGAAATTATAATAAAAGAAAACTAGCTTCAATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321594" ref_strand="+" ref_description="SGN-U321594        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: ATPDX2 | Encodes a protein predicted to function in tandem with PDX1 to form glutamine amidotransferase complex with involved in vitamin B6 biosynthesis. PDX2 is predicted to function as glutaminase within the complex. | chr5:24353849-24356028 REVERSE | Aliases: MUF9.1, MUF9_1, EMB2407, EMBRYO DEFECTIVE 2407, ATPDX2(evalue: 2e-97, score=352) genbank/nr: gi|46399273|gb|AAS92257.1| putative pyridoxine biosynthesis protein [Nicotiana tabacum] (evalue: 6e-127, score=457)">
      <seq>gatcctttttttttcgattttcaaggaagtgtgacgcaggtggccgcctcttagccgccaacagatattatcagtgaagcaaaagcaaaacactcaccaaattcacccttttttccatacccttaaactccttagccgcaattgctgtttcaagattgtgttttttttagtacccttttgttaattttcattgtttcttgattttgcaacttgaaaaatggttgtgggtgttcttgctttacagggatctttcaatgaacacattgcagttttgaaaagattgggagtgaaaggtgtggaggtgagaaagccagagcagttgctgaatgttagctccctaatcatccctggtggggagagcaccaccatggccaagttggctgagctccacaatttgttccctgctttgcgtgagtttgttcaaatggggaagccagtatgggggacatgtgcaggtctcattttcttggcaaataaggccactgggcagaaaaccggaggacagaaactaattggaggccttgattgtactgtacaccgtaacttttttggaagccagattcaaagctttgagacagaacttcctattcctcaagtcgtagctgaagatggtggtcctccaagttttcgtgctgttttcatccgtgctccggcaatccttgatgtaggaccagacgttgaagtattgtcagacattcctctatcagccatagaaactcttaattccaatcctgctattcaaaaggaagaggaatctaccgagtctggaaagaaagtaattgttgctgtaaagcaagggaacttactagctactgcttttcatcccgaattaactgcagatactcgatggcacagttatttcttgaagatggtgcctgaaatcgaaggaggaacttctgatattgtgtcaacatccacctcaaatcaaagcttcggaacgcgttcaattattgattttcccatataccagtagcagaaaaaaaaattgcttcaaagaaatgcagatcatgttaaaaggtcaaatggctactcattgacattgttatgtttttatttttgttaattttcatttgcttatcatacattttaaatggtgttcatgttaagacatgaaatgttgaatgccattcattgttgtacataatattaaaggattttttttccccctcctcatccccaaatacaataataattacgtttcattccccttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="56666" stop="50066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56366" g_stop="56098" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56097" i_stop="56016" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56015" g_stop="55888" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="397" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55887" i_stop="54648" i_length="1240">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54647" g_stop="54560" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="485" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54559" i_stop="52504" i_length="2056">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52503" g_stop="52430" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="559" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52429" i_stop="51967" i_length="463">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51966" g_stop="51775" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="751" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51774" i_stop="51103" i_length="672">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51102" g_stop="51005" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="849" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="51004" i_stop="50730" i_length="275">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50729" g_stop="50372" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="850" r_stop="1207" r_length="358" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1211" polyA_stop="1244"/>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-U321594" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1207</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56366" e_stop="56098"/>
          <exon e_start="56015" e_stop="55888"/>
          <exon e_start="54647" e_stop="54560"/>
          <exon e_start="52503" e_stop="52430"/>
          <exon e_start="51966" e_stop="51775"/>
          <exon e_start="51102" e_stop="51005"/>
          <exon e_start="50729" e_stop="50372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCTTTTTTTTTCGATTTTCAAGGAAGTGTGACGCAGGTGGCCGCCTCTTAGCCGCCAACAGATATTATCAGTGAAGCAAAAGCAAAACACTCACCAAATTCACCCTTTTTTCTATACCCTTAAACTCCTTAGCCGCAATTGCTGTTTCAAGATTGTGTTTTTTTTAGTACCCTTTTGTTAATTTTCATTGTTTCTTGATTTTGCAACTTGAAAAATGGTTGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATTGCAGGTACCCTTTTTGTGCTTTTGATTGTGTAGATTTTTTTTGTGTTTGTTTTGGTTTTTTTCTTATGTGTTTTGGATTTTGATAGTTTTGAAAAGATTGGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCAGTTGCTGAATGTTAGCTCCCTAATCATCCCTGGTGGGGAGAGCACCACCATGGCCAAGTTGGCTGAGCTCCACAATTTGGTAACTCTCTTATGGTCGTTTGGTTGGGTGTATAAGAACAATACTGAATATGATGTATTACTAATGCATGCTGAGATTATCTCTTATCCATGGTTTGGTTTGGTGTATTAAAAACAATTTTGTATTTAACCATGCTTGTCCATGTTTTTAACGATCCTTGTAATACTAATATAGTTTGTTTTGTATTAGTTATACACTCTATAATATTGAATATGGCATGTTAGTTATGGATAGACTAAAAATCCTACCAAACAAAGGATTGAATATGTCGTGACTAATACATGTATGATTTTACTCTTGTACATTCTATTAACGATCCTTTACTTGCTGTTAATAGGCGAAAGGCAGGTCTCCTTGGCCTTTTTGGTTATTTATTGAACAAGGGTTATGGGTAGAAAATTGAAATTTTAGGTTTGTGTAGTAATAAATGTGAGATTTAGCAACCACGAAGCAGTGGAGTGGTAAGGTTGCGTATAACCACCTTCCCAAGACCGACTTGTGGGGTTACACGGGCTATGCTATTGTTGTTGAAGTGTATAGTGGGATGGGTACTATCACTCCACCCTTAACTAGCACGGTCTCTAGACCCCACTTGTGGGATTACACTTGCTATGTTGTTAACGTTGAAGCGGTGTAGTGGGATAGTTACTGTCACTCCACCCTTAACTAGCACGGCATCTGGTTCTAGCATGAGAATGGAAAACCTTTCAATAGCAGCTCCTTATCCATTAGAGTGGTTTACAAATATTAGGTGCTTAAAGAAAGAAAGAGAAAGGGTGTGAGATTTAGTGGAGTTGTTGATTTTGAGAATTCACGTAACAGCTCCCAATTAGTTTGAGATTGGGAGTAGTAGATTGATGGCTTGCAACCCTCCATAAACTGATGAATTATTATTGTTGAATTTGATTTGTGGAGCATCGTGAAAAGTGTTGAGCACGAAAGGTTGAATTTTGCAAAGTTCAAGTTATATACTCAGAAAACAGTACACAAAAGGCTTGCATTTTGTGTTCGAATCCTACTCACTCATGGTTTGGCTTCGTCTGTTAATTATTGGCGTTCATTTCTACTATTATTAGTTTATTACATAGTAAAATTTGTGATTTCATTAGTTGTTTGTTGTTGCATTGTTTCTTAGGGGCATCTTAGTTTAAGTTTGGATGCATAATTTTACTGATTGGTGTTAGTTATTATGTTTGGTATAATTTTGTCCATGTTAGTCTGATCGTGTTTCTAATTGCAGTTCCCTGCTTTGCGTGAGTTTGTTCAAATGGGGAAGCCAGTATGGGGGACATGTGCAGGTCTCATTTTCTTGGCAAATAAGGCCACTGGTGAGTGTCCAACTCCATATCTTACTATAAGTGTAGGATACACTTTGCAGAGTCCTTGCTGCTTATCTTATTAGTCATCTTATAAAGCAAGATTTTGGGGTCGTTTTTCCAAGAAAAAACTAATTCATGGTCGATATTATAGCCAATTTGGGTGTTTGCAGGTTTGAAATTGGTATGTATTTTGACTATTTTCTATAAACCATAGGAAGGGGAGCCTTGGCATAACTGGTAAAGTTATTGTCATGTGACCAGGAGGTCACGTGTTCAAGCCGTGGAAACAAACCTCTCGAGAAATGCAGGGTAAGGCGCATATAATAGGCCGTTATGGTCCGGTCCTTCCACGGATCCGCGCATAGTGGGAGCTTTAGTGCACCGGGCTGCTGGGCCCGTTCTGTAAACCATTGGAATTGCACGCTATGATTAAACAGAGCTTGAGTCAAGGATACTTTTCTCTTCTTAAAAGATCCACATCCACTTCTGTTCTTTGTTTTAATATCACATGAGAGCCATTTGATCTGGCTAACTCTACTTGATCAACAGCCTTTTAGTCGCCAACCGTCTGGCTTTTTATGGAGAAACAAATAATGTCATAATATAATCTTCCTAATTGACTACGAGATTGAATTTAAGAATTTATATGTAAAAATGTTAACTTTATTAGATTTATCTATAGTTGATAATAGTATATATCTTTGTTTAAAGATGAATTCTGAATATATCAAACGACAAAAGACTCATGTCACTCTTTAGTGTAGTATGATACAACTTATGCTTGTAGTACTGGAGATTATTCTAATCTCTTCTCTGGTTGCATTTGAGGGTCTATGTTGGTTACATATTCTTATATAAGAGCGCATATACTTGTCACGAGTTCTGAGACGATATATTACTATGTATATCTGTTATTGCTAGACTTTCTAGGGTAAGTAGTTGATTTTGTTCCCCGCTTCCTTTGCTCCACGCGCACCAATCGAGAATTCGAGATAGAAAGATAGATTGATTGGTGGGCCATTAAGCCTCATATCACTTTAAGGCAGATAATGGAAAGGTGAGCCAATGTAGCATGCTTGTTTACTCATCTGCTATAACTACGGGATCAATGAAATATACTCAATAGAGAACAACATTTGTGAACTTTTATATTTCATTTTGTCATGTCAAACTATCAGATTGAGCTTTTACTTGTAATCATTTTGTCATGTCAAACTTTCACATTAAGCTTTTACTTGTAACGGTAAAGCATTGCCACATCAACTGATGTCAATAACATTAGGCAATTAATCTAAAGGCACCTATTGAATCTCACAAATTTTGAGAAGTTGTTGTCTCACCTTGGAGGTTGTCTAGGACACAGATTAGGTACTAGGTTAGTAGGTAGTAGAGTGTTGTATTGCTTATCCTTCCATACTAGTAGTATTCGTATTCACCTGTAGATTCTTCTAGATTCTTGTCCTTTGCTTTCTGTTACTATCTATTGTCTCTTATCAGTATTCGCTCTGTGGTTTCTCATCCTTCGATTTGTTTAGGACACAAATTAGTGCACTAGTTTGTTGTAGTTATTGTACCTTCTTTCAGAATGCTTCGTCATGCTTCCTTAGTACTTTGCCATGATCTCTTCATTTCCACTTTTTCTTTTCTTGATATGCTTTCCCTTAGCCAAGGGTCTACTAGAAACACTCTCTACCTCCCAAGGTAGGGTTGAAGTTTGTGTTCACTGTACCCTCCCCAGACCCCACTCGTGGGATTACACTGGTTATCTTCTTGTTGTTATATTAGTTTTGCTACATCTACTGATCTCAACAACATTAGGCAATTAATCTGTCGACACCTATGATTTCACAAATTTTGAGAATTTGTTGTTTCTCCTTTTTCTCGGGGTTATTAATTTTGCTTTACTGTTCTAGTTACTTGTAGAGCACCCTCTCCACTTATCCAGAATAATATAAAGCTCACTTTGTCTGGACTAGTAATCACAAGCTCTTTTTGATGAACCTTCTTACTATTTTTACCATATTGAGGCGAGAAATTACACACATTTTGTGGCTTCTCTTCTCAGGGCAGAAAACCGGAGGACAGAAACTAATTGGAGGCCTTGATTGTACTGTACACCGTAACTTTTTTGGAAGCCAGGTAAACAAGTGGTTCTTTTCCAACATCTTAATAGATCAGCAAGAAAGGAAGGAATTCATTTACATAGATAAGCAAACACCCGTACTATGTTTATTAGTTATTAGGGAGTCGGGCAACATTGCCTTTATCAAAAAAAGAAAAAGAAGAGAGGGTGGCAGGGGTGAGTGAGGCATGCTTATGGGTTTTGTTTTCAAGTTAAAGACATTTTGCTACATAAGGTTCCTGTACCTCAATAAATAGCATGCAACCGAAGTAGTTAACGACTTAAAGGTCTATCTATAACTAAGAGCTCTTGCAAACACCATAAGAGAGATAACCACACACATTTTCTATATGATGACGGAGTTGTGGTTGTTATAGCAAACTTGTGAAGAAGTGCTCAATTTTGATGAATGAGTTGGAGTTGTTTTGTGTTATTAACCACAGTATGCTAATGTAGCTTTTTAATTATCAAATTGAACAGATTCAAAGCTTTGAGACAGAACTTCCTATTCCTCAAGTCGTAGCTGAAGATGGTGGTCCTCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGTCAGACATTCCTCTATCAGCCATAGAAACTCTTAATTCCAATCCTGCTATTCAAAAGGAAGAGGTTTACTTTGTCCTTCTGTCCATCTAGTGTCCTAACTGCAATATAGATGTGCCTTGTAAAAAATAAAGGCATAACACATAAACAAACACTCAAACTTGGCCTCATCTGGCAGGCAACTAAGCACTCCAACTTTAAGTATGCACACCTAGACACCTAAATGTGGTCTCAACTGACAACTAAATGCTCCAACTCGTCTCCACTGTGTCTTGTGGACATATGACGTTGATGCGTCACATAATTTTGGAGGTGTCTAAATGATCATTTGTATGTCGGAGTGTTCACCTGACACAGTGGAGACGAGTTGAGGTGTCTAGATGTGCATACTCAAAGTTAGAGTGCTTGCTTACCAACTGAGATCAAGTTTGAATGTAATGTTTATATATTATGCTTTTCCTAAAAGTTGGTGCATGTGTAAAGAATTTTTGTTTTCTAACACGTCTACATGTGTCAAAAGATTACACTAGCGAGTAAGACTTGATGGCCTGTTTTGCGATTGGAAAACAATGAATGTGATAACACACTAGTACACTACAAGTTAGTTTACAGACTCTAATTAAACCAAGTCTAACTCTTCGTAAAGGAGGAATATTGTCATAATGCTACTTAATTTTTTGCTTTCCTATCGGTTTAGAATATCAGCTCAGTGTGATATGATATCTTTTGATGCTTCAGGAATCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATGGTATGTTTCTTCTGCGACTAGTATGAATGTTATCTACTACCTCAGTGGCACTATGTACTACTATTATAACTTCACTTTGTTACGGCCCCTTGATATGGATCTAGTTATGGGACACTGCCAAATGAAATAACGTGTTTTCTTCCTACGACCTATGGTGCTAGTTCGTTAAGAAACAACCCATTTTTAGTACATAGTCTAAATCTCCCTGCCTCGAAAAGGTTGATAGCCTGTTTCCTATAGACCCTCGGCTCAAGTAACATCACTTTGTTTTACAGGCACAGTTATTTCTTGAAGATGGTGCCTGAAATCGAAGGAGGAACTTCTGATATTGTGTCAACATCCACCTCAAATCAAAGCTTCGGAACGCGTTCAATTATTGATTTTCCCATATACCAGTAGCAGAAAAAAAAATTGCTTCAAAGAAATGCAGATCATGTTAAAAGGTCAAATGGCTACTCATTGACATTGTTATGTTTTTATTTTTGTTAATTTTCATTTGCTTATCATACATTCTAAATGGTGTTCATGCTAAGACATGAAATGTTGAATGCCATTCATTGTTGTACATAATATTAAAGGATTTTCTCTCACACTCCTCATCCACAAATACAATAATAATTACGTCTCATTCCC</genome_strand>
        <mrna_strand>GATCCTTTTTTTTTCGATTTTCAAGGAAGTGTGACGCAGGTGGCCGCCTCTTAGCCGCCAACAGATATTATCAGTGAAGCAAAAGCAAAACACTCACCAAATTCACCCTTTTTTCCATACCCTTAAACTCCTTAGCCGCAATTGCTGTTTCAAGATTGTGTTTTTTTTAGTACCCTTTTGTTAATTTTCATTGTTTCTTGATTTTGCAACTTGAAAAATGGTTGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATTGCAG..................................................................................TTTTGAAAAGATTGGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCAGTTGCTGAATGTTAGCTCCCTAATCATCCCTGGTGGGGAGAGCACCACCATGGCCAAGTTGGCTGAGCTCCACAATTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCTGCTTTGCGTGAGTTTGTTCAAATGGGGAAGCCAGTATGGGGGACATGTGCAGGTCTCATTTTCTTGGCAAATAAGGCCACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAAACCGGAGGACAGAAACTAATTGGAGGCCTTGATTGTACTGTACACCGTAACTTTTTTGGAAGCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAAGCTTTGAGACAGAACTTCCTATTCCTCAAGTCGTAGCTGAAGATGGTGGTCCTCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGTCAGACATTCCTCTATCAGCCATAGAAACTCTTAATTCCAATCCTGCTATTCAAAAGGAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATG...................................................................................................................................................................................................................................................................................GCACAGTTATTTCTTGAAGATGGTGCCTGAAATCGAAGGAGGAACTTCTGATATTGTGTCAACATCCACCTCAAATCAAAGCTTCGGAACGCGTTCAATTATTGATTTTCCCATATACCAGTAGCAGAAAAAAAAATTGCTTCAAAGAAATGCAGATCATGTTAAAAGGTCAAATGGCTACTCATTGACATTGTTATGTTTTTATTTTTGTTAATTTTCATTTGCTTATCATACATTTTAAATGGTGTTCATGTTAAGACATGAAATGTTGAATGCCATTCATTGTTGTACATAATATTAAAGGATTTTTTTTCCCCCTCCTCATCCCCAAATACAATAATAATTACGTTTCATTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320628" ref_strand="+" ref_description="SGN-U320628        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: | Symbol: None | protein kinase family protein, contains eukaryotic protein kinase domain, INTERPRO:IPR000719 | chr3:16581463-16583887 REVERSE | Aliases: F18N11.1(evalue: 5e-145, score=511) genbank/nr: ATP(evalue: 4e-143, score=511)">
      <seq>tgatctttcccaactttaagaggtgtaatccatttgtgtgatgaggctccaactctggtgacgaatggaagattctggcctgacattgatctcttgtctgttgttattataaattggaactctcatgatgtcgtggttcaatcgcacaggaatcaatttgattaactgcttctttcattttgctgaatggcatccgattgaataacaaagttgaacccgggtggatgcccgaatagcgttttcctctttttaaggttcttgaatcaaattgttcgattgtgctgtatattagtgtactccactgggacgtattttctgttgttttggatgtctgtgatgatgcattctgttgatgaagttacagaaatggggtgctgtggatgttttggattctcttttgcaagaaaaccaaaaaaggaaattaggcctaataggggatatggaaacagctggtcacatgaaccattgttacaacaagaggctgaagaagtcgaagatgatggctttgatagtggcgatataattgatactggtagtgaggatgatgaagtgtgtcacagcccggttaaacgttatcaagagattctcatggaaagagctcagaatgggttaatttgcagggagatccctgtcaaggaaacacacaaagttgtgcgcacagaggatgaagatgggaacaagatggttaacgaatatgtccgtgaacacaaaattggtgctggtagctacggtaaagtggtactttatcgaagttgcactgatggaaaacattatgccattaaggcctttcacaagtctcacttatcaaagatgcgggtggcgccttcagaaactgctatgggtgatgttcttcgtgaggtttcgatcatgaaaatgctgtgccatcccaatatagttaatcttgttgaggtgattgatgatccagaaacagataacttctacatggttctcgagtacgtggaaggaaaatgggtttgtgaagattctggtcccccgtgtgttcttgaagaaaataaagcacggctgtacttgcgtgatatagtgtctggcttgatgtatctgcattctcataatatcatacatggggatattaagccagacaatcttttagtgtctgctgctggtaaggtgaagattggtgatttcagcgtcagccaagtttttgaggatgataatgataaactccgtcgatctcctggcactcctgttttcactgctcctgaatgctgcgtaggagatagatatcatggaaaatgtgctgacacgtgggcggttggtgttaccctttattgcatgatcttgggaaaatacccgtttctaggagaaactctccaggatacatatgacaagatagtaaataaccccatcattctccccgacgatatgaatccgttactgaagaatttattagaggggcttctctgcaaagatccaacacaaaggctaactctcgaaagtgtttgtcaacacgagtggttcctaggagatgaaggccccatccctcagttctcgtgttggtgccagcgccaaaagttgcagaaagacgtacaggatgggagcgcagaggatacccctacttgaattaactgcagagtgttctagtatgtttataacgttccgttctctcttctcagttcttgtaggaagataaaactaggatgtctttttttccccagcaaattgcacttgcaggagcaatcggatacatgttatgtgaacgatagtagaaaatgagacgttcgagtaaattttgtttggtttctgtcatactccgagagtactatttcagttgtaatggcagcgagacatcgcgatatgttttcgttgtttttttgttggtgatgaactgatgatggtacaagttttgtgttttgatacttagaagaaagccaacatatttgtttttgtggatatttgtatgtgttttttttatatgaagaagaattttcataaaaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="58108" stop="107354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58408" g_stop="58427" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58428" i_stop="59657" i_length="1230">
            <donor d_prob="0.805" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59658" g_stop="59891" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="254" r_length="234" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59892" i_stop="60385" i_length="494">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.707" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60386" g_stop="60794" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="663" r_length="409" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60795" i_stop="60965" i_length="171">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60966" g_stop="61040" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="738" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61041" i_stop="61129" i_length="89">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61130" g_stop="61174" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="739" r_stop="783" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61175" i_stop="61716" i_length="542">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61717" g_stop="61793" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="858" r_length="75" r_score="0.974"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="61794" i_stop="61925" i_length="132">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="61926" g_stop="62013" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="859" r_stop="946" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="62014" i_stop="62099" i_length="86">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.382" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="62100" g_stop="62224" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="947" r_stop="1071" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="62225" i_stop="63666" i_length="1442">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="63667" g_stop="63762" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1072" r_stop="1167" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="63763" i_stop="64084" i_length="322">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="64085" g_stop="64151" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1168" r_stop="1234" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="64152" i_stop="64287" i_length="136">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="64288" g_stop="64403" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1235" r_stop="1350" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="64404" i_stop="64487" i_length="84">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="64488" g_stop="64566" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1351" r_stop="1429" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="64567" i_stop="64873" i_length="307">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.227" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="64874" g_stop="65407" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1430" r_stop="1969" r_length="540" r_score="0.933"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="65408" i_stop="65610" i_length="203">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="65611" g_stop="65630" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1970" r_stop="1988" r_length="19" r_score="0.550"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-U320628" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>1985</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58408" e_stop="58427"/>
          <exon e_start="59658" e_stop="59891"/>
          <exon e_start="60386" e_stop="60794"/>
          <exon e_start="60966" e_stop="61040"/>
          <exon e_start="61130" e_stop="61174"/>
          <exon e_start="61717" e_stop="61793"/>
          <exon e_start="61926" e_stop="62013"/>
          <exon e_start="62100" e_stop="62224"/>
          <exon e_start="63667" e_stop="63762"/>
          <exon e_start="64085" e_stop="64151"/>
          <exon e_start="64288" e_stop="64403"/>
          <exon e_start="64488" e_stop="64566"/>
          <exon e_start="64874" e_stop="65407"/>
          <exon e_start="65611" e_stop="65630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTTTCCCAACTTTAAGGTAATGGGGTTTTTATTTCAGAAAGAATCTTGGAAAAAGATTGTGTTTTTAATTGATTTTGATTGTTGTTATGAACAATTATTAGGAGAAAGATTGAAGCTTTTGATGTTTTTAGATTTCTTTCAAAGAATCTTGGAAAAAGATTGTATTTTTATGAGCAATTGTTAGGAGAATGATTGAACCATTTGATGGTTTTGATTTCCTATAAAGAATATTGATAGAAGATTGTTTTTTATTGGGTTTGATTGTTTTATGAACAATTGTTAGGAGGATGATTGAACCTTTGAATGGTTTTGATTGTCCCCAAAGAATCTTGGAAAGAGATTGTATTTTTATTGGTTTTGATTGTTTTTATGGAAATTTGTATGGAGAATGACTGAACCCTTTGATGGTTTTGATTTACTATAAAGTGTCTTGGGAAATATATGGTTTTTATTGGTTTTGATCATTTTTCTGAAAACATTGTGATCCAAATGATAGAACCTTTTGATGTTTTTAATTTTCTACAAAGAATTTTGGGAAAATATTGTATTTTTGTAGGTTTTGATTGTTTTTATGAACAATGGTAGGAGAAAGATTGAACCTTTTGATGGTTTCTTATTTCCTACAAGGAATCTTGGAAAAAGAATGTATTTTTATTGGTTTTGATTGTTTTTATGGAAAATTGTTTGGAGAATGATTGAACCCTTTGATATTTTTGATTTCCTACAAAGGATCTTGGAAAAATATTGTATTTTTATTGTTTTTTTGAAAAAATTATTAGGAAAATGCTTGAACCTTTTGATGGTTTTGATTTCCTACAAAAAATATCTTGGGAAAAGATGGTAATGTTTTTCGGTTTTGATCATTTTTATGAAAAAAATTGTCAGGAAAATGATTGAACCTTTTGATGTTTTTGATTTCCTTCAAAGAATCTTGGAAAAAGATTGTATTTTTATTGGTTTTGATTGTTTTTATGGAAGTTCTTAGGAGAATGATTGAGCCTCTTGATGGTTTTGATTTTCTACAAAGAATCTTGGAAAAAGATTGTATTTTTATTGGTTTTGATTGTTTTTGTGGAAATTGATAGAAGAATTCCTTTTTGATGGTTTTGATTTTCTACGATGAATCTACAGAAAAGATTGTATTTTTTTGGTTTTGATGTTGTGGTATTTTGAGTTAATTTGATTCCAATATGTGGGTCAATACTCAAATGTGTTTTCTTTTTGTTGATTCTTTCAATTGTGGCAGAGGTGTAATCCATTTGTGTGATGAGGCTCCAACTCTGGTGACGAATGGAAGATTCTGGCCTGACATTGATCTCTTGTCTGTTGTTATTATAAATTGGAACTCTCATGATGTCGTGGTTCAATCGCACAGGAATCAATTTGATTAACTGCTTCTTTCATTTTGCTGAATGGCATCCGATTGAATAACAAAGTTGAACTCGGGTGGATGCCCGAATAGCGTTTTCCTCTTTTTAAGGTTGTTATCAGCTTTCGTTTTCAATTACGTGTTTTGACATACATTATATATTTCCTACTTTCGTTGAACCAATGACTATGAGAATGTTGGTTAGTGTTATCAAAGCAGTGTGCTTAAGCCAGGAAGCAAGACTCAATACTTATTGAGCTCTCCCCTTGCCTAATGTGCACTTCATTGTTTTTATCAAGGTTCTAAGGCATATTTTTCCTTGCCAATGAGCCTATTTCACTTTATCGTAATTCTTTTTCAATTTCCTTGTTCACATATTTGTTTTTCATGCCTATAGTAGTCTTGGCCAAACGTATATATTTTTCACTTTTTTCTCTCTGCGGCTTTTTTCATTAAAGTCCATGCTTTATTTGCACTTTGCACTGAAAGCCCCATTGGACTTAGAGTTTTTTTTTGCCTTTTGCTTTTGATAACACTGGTTTGGCTTATCATTTCGTTGTTGTCTAGTTGATTGATGTTAATAAGAGTTGTATGCTAATTTTCAGGTTCTTGAATCAAATTGTTCGATTGTGCTGTATATTAGTGTACTCCACTGGGACGTATTTTCTGTTATTTTGGATGTCTGTGATGATGCATTCTGTTGATGAAGTTACAGAAATGGGGTGCTGTGGATGTTTTGGATTCTCTTTTGCAAGAAAACCAAAAAAGGAAATTAGGCCTAATAGGGGATATGGAAACAGCTGGTCACATGAACCATTGTTACAACAAGAGGCTGAAGAAGTCGAAGATGATGGCTTTGATAGTGGCGATATAATTGATACTGGCAGTGAGGATGATGAAGTGTGTCACAGCCCGGTTAAACGTTATCAAGAGATTCTCATGGAAAGAGCTCAGAATGGGTTAATTTGCAGGGAGATCCCTGTCAAGGAAACACACAAAGTTGTGCGCACAGAGGTAACAGCAGGAAAACTCTTTCTTACATTCGCTGTGAAAATCCTCTACTCATAATTGAGACATGGATGGCTCAGACATACGTTTGTACAAGGATCACTAGTTTTGATTTGTCAGGGAACAAAAATGGGAGGTGTAACTTGACTGTTCTCCTCTGTTGTCATTTTGATTCAGGATGAAGATGGGAACAAGATGGTTAACGAATATGTCCGTGAACACAAAATTGGTGCTGGTAGCTACGGTAAAGTGGTGAGCTCAAAGATATCAATGTTATCTTTCTTTCTTTTTTTCGGTTGGAGGGATAAAAGTTGACATTTGATCACGTTGGGATGGCACAGGTACTTTATCGAAGTTGCACTGATGGAAAACATTATGCCATTAAGGTAAAAATTTTAACATATCCAGTTAGCACTGGGGAATTTACTTGGTCACAATATTTACTTAGGTTAATTGTACTAGTGGTATTCCCATATCAAAAAAAAATAAAATTGTTTCTTTATTTTTCCGATGAAGTTCAAACGCTAGACGTAAGAGTGGGATTTGAAACTTATTGTTTCTTTACTTAGTGATAGGAGTTTTTTTGCATTGTACTATTCTTAATGAGTTCCATTTAGGATTTTGCTGTTGTATTTATACTGGCATCTAGGGTATCTGATGTTGATTTGGAGTTATATTTTTGAATAATCAACAACCAGACTGCCCATTCCAATTCATTCATAGATACATCATACATGGAAGGGATAATTAGGTAGTTGAATTACTCTATGCTAGGGAAAATTGTATTTAGAGTCGTGGAGAAACAGCCGGAAAAGGGAAGTGGACAATAACACAGAGTCGCAGACAATTTTGTCCGCAAAGAACAATTAGTGTTGTTACTTGATTAAAGTTTTCAAATAGTGATAATGTTTGTTTTTATTGAATGCAGGCCTTTCACAAGTCTCACTTATCAAAGATGCGGGTGGCGCCTTCAGAAACTGCTATGGGTGATGTTCTTCGTGAGGAATGTCCTTTATTTCTTCCCTTGAGTTTCAATCTTCCTTTTGTGGGTTATCCGCAAATTTTATCCTGTAGTATTAGCTATTTGTCCGCTGAATTGTTTATTTGCTGTCCTAAAGTTTGTCAAGTTAATTGCAGGTTTCGATCATGAAAATGCTGTGCCATCCCAATATAGTTAATCTTGTTGAGGTGATTGATGATCCAGAAACAGATAACTTCTACATGGGTATTATCCAGTTTCTTTTTTGTGCAGTCGTCCAGCTTCTTCAATTATATGAATGTCAACTAACATTTCCCCCCTTTACTAAAAAGTTCTCGAGTACGTGGAAGGAAAATGGGTTTGTGAAGATTCTGGTCCCCCGTGTGTTCTTGAAGAAAATAAAGCACGGCTGTACTTGCGTGATATAGTGTCTGGCTTGATGTATCTGCATTCTCATGTAAGTCCCAATCGTTGGGATCTATGTATTTATTAATTATTTTTATATATTGCACACATATTTTTTTTACTTTCTTCTTCATTGCGCTTCTTTACTAAAGCCAACATTGTAATTGCACTTCGCATCCCCAACAGACCTCAGTTATACTCTTTTCGGTTTTGACAATGTTGTTACCTTTTAACGCTTATATGCAAGGATTCTAGATCATGTCCTCTATCAGTCTATAACTTACAAATCTCAATCACTTTAGTGAAGTGTTAAGTCTCTTGTAAAAGAGAAAAGATTGATCTGTATAAAATAACTCTGGATCCCTTATCCATTTCTAGAACAAGTTTCTGAAGACTCTGCTCCTGAAGAATTTACCCATGCATTGTCAATACTTTCATCTCAGTTTTCTACTCTTGCATTTTTTTCAAAACTGTACCGAAAAATGATTTCTTGGGACACGTGTATTGGAAACAACCTCCCTACTCCACAAAGGTAGGAGGTGTAAGGTCTATGCACACCATATTCTCCCCAAACTCCAATTGTGAGACTATACTGGGCATGTTGTTGTTGTAAGGTCATGAATATAAGTTGCTTGGTCAAGATAGGTAGTTTCCCGTTGATTTCCTGTAAAACTAAGATAGGATGGCGTGTGAAAAAATTCATTTGACGACTTTGTTGACGATGTGAATCTATTTCATTTATGTGATAATTTATGTAGCCGAGTCACCAGGATTTTCTTGGACTCCTTTTCTAGAGGATAGATAGACCCTGTTGAATAACAATGATCTCTTGCTTAGGGAGATGTTTTCCCTCCCTCTCTCCCGTTTTTAAAGGAAATATATGGGCCTGTAGTTAATTGATTTGCACTTATCGAAGACCAAAATGATATCTGTTTCATTCTATCGGTTGTTCCATCAGCTAGTTGTTTGGCTAGAGAGCTCGGGTGCCTTTGATGTCTTTTTCTTTCCTAATGAGCATTGAGATAGGACTGTAATGAACCGAGTGCAGTGTTGTGAAAGGCACGCTCAAGCCCTAAACCGAGGATCAAAATTTGTTGAGCGCTTCGTGTCACTTATGGACTATATATATATATTTGTATTTTTTTCCGTTTGTGCCTTTTTCAATTGAAGCTTATGTTTTGTTTGCGCTTAAAGGCCCATTGGGAACCTTTGGAGCTTTTTTGCATTTTTTGTTATTATCGAGTGTTCTGCTTTTCCTACAAAGCGGAAAGGTAGTTCTTTTAGCAGCATCGAAATCCCAATGGGATGTGGATTACTTGCTTTATCAAGTAAACTAGGACTTGAAACTTTAGAATTTAGTGTCTCCGCTGGGCATAAGAATTCATGCATTAGTAGTAATTTTACGCTTATCAGACACCTTATCTTTAATGCTTTACATTCCCGATCCACGCCATAGTGTTTTACCTATGTCCTTTCTTGTTTTGTGTTGAGCAGAATATCATACATGGGGATATTAAGCCAGACAATCTTTTAGTGTCTGCTGCTGGTAAGGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAGGTATGACCAAGCTCAACAATGTTCTGTTCTTTAAATAGAATTTCCAGCCCTAGTTTCTTATAATCTTACGACTAAGAATGTGTATATGAATAGAAATAGAGATTGGTTGTCATAGAGGTCGATAGTCTTTGTTTAGACGCACCTAGTTGGAATAATGTCCTAATGATAGGAAATTTATTTGTACTTGTTGGCTCTAAACTTTTGGGGCTTGAAGGGTTTGGTGGTGATTGCGTTAATTTAAGTTGTTTTCGTTTAATATTTGTTCTTTCCTGTTCTTTTCCGGTATATTACTAACTGTAGTTGGAACTATTCCTGTTTGTAGGATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGCGTAGGTCAGGACTTCTTGGCTCGTTGAATGCTGACATCTAAATTATCGTTAAACTTAGCTGACTACTTGTTTGGGACCAAGGCATAATTTTTCGTTGTTGTTGTTATTGAAGTGGTTTTTTCTGTATTCTTTATTAATAGGAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAGGTGCGAGTCTAATCGTATATCCGAGGTACAACATAGACTTTAGTCTTTCCTGCTTTCTTAACTGCCTGTATTTCGTCTTTCCAGATAGTAAATAACCCCATCATTCTCCCCGACGATATGAATCCGTTACTGAAGAATTTATTAGAGGGGCTTCTCTGCAAAGGTTTGTCTCTCGTCCTGCTTGATATCTTGACTCTGTGTAGTCTCCTATTCTTCTGTGTGTTGCTTCATTTGCTTTATATCTTGCTATTTGGTTGTCATATTTTCTTGCAATCCTTCTTCGATAACATTCCTTTTTGGCCGAGGGTCTATCGGAAACAACCTCTCTACTTGCCAAGGTAGGGGTTAAGGTCTGCGTACTTCCTACCCTCCCTCGTCCCCACTTTTCGGATTACACTCTGTATGTTGTTGTTGTTGGTAGCTTACTAATTTCTCCACCTATTTTCCTAACAAAAAGTCCTTTTGCATAGATCCAACACAAAGGCTAACTCTCGAAAGTGTTTGTCAACACGAGTGGTTCCTAGGAGATGAAGGCCCCATCCCTCAGTTCTCGTGTTGGTGCCAGCGCCAAAAGTTGCAGAAAGACGTACAGGATGGGAGCGCAGAGGATACCCCTACTTGAACTAACTGCAGAGTGTTTCTAGTATGTTTATAACGTTCCGTTCTCTCTTCTCAGTTCTTGTAGGAAGAT-AAACTAGGATGTCTTTTTTTCCCCGGCAAATTGCATCTTGCAGGAGCAATCGGATACATGTTATGTGAACGATAGTAGAAAATGAGGTGTTCGAGTAAATTTTGTTTGGTTTCTGTCATACTCCGAGAGTACTCGTTCAGTTGTAATGGCAGCGAGACATCGCGATATGTTTTCGTTG-TTTTTT-TT-GT--TG--GTAATGATGGTACAAGTTTTGTGTTTTGATGCTTAGAAGAAAGCCAACATATTTGTTTTTGTGGATATTTGTATGTGTTTTTTTTATATGAAGAAGAATTTTCATATGATAGTGTAAAGTAAAGTTATTAAGTGAACATCCTTGTTATAGATTTTTAGTATATGTCCCTCTTTTTTTATCGCTTTTCTTGAGCCGAGGATCTATCTAGAACCGTCTCTCTACCTCTCGCATGATAGAGGTAAGGTATGCATAACTAATATGAGAAAATGTTATATTACATTCTATAATTTTGTATATATTATATGATTGTCTAATATCGTCTATAGTATTACAGAGGCGGAGCCAG</genome_strand>
        <mrna_strand>TGATCTTTCCCAACTTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGTAATCCATTTGTGTGATGAGGCTCCAACTCTGGTGACGAATGGAAGATTCTGGCCTGACATTGATCTCTTGTCTGTTGTTATTATAAATTGGAACTCTCATGATGTCGTGGTTCAATCGCACAGGAATCAATTTGATTAACTGCTTCTTTCATTTTGCTGAATGGCATCCGATTGAATAACAAAGTTGAACCCGGGTGGATGCCCGAATAGCGTTTTCCTCTTTTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATCAAATTGTTCGATTGTGCTGTATATTAGTGTACTCCACTGGGACGTATTTTCTGTTGTTTTGGATGTCTGTGATGATGCATTCTGTTGATGAAGTTACAGAAATGGGGTGCTGTGGATGTTTTGGATTCTCTTTTGCAAGAAAACCAAAAAAGGAAATTAGGCCTAATAGGGGATATGGAAACAGCTGGTCACATGAACCATTGTTACAACAAGAGGCTGAAGAAGTCGAAGATGATGGCTTTGATAGTGGCGATATAATTGATACTGGTAGTGAGGATGATGAAGTGTGTCACAGCCCGGTTAAACGTTATCAAGAGATTCTCATGGAAAGAGCTCAGAATGGGTTAATTTGCAGGGAGATCCCTGTCAAGGAAACACACAAAGTTGTGCGCACAGAG...........................................................................................................................................................................GATGAAGATGGGAACAAGATGGTTAACGAATATGTCCGTGAACACAAAATTGGTGCTGGTAGCTACGGTAAAGTG.........................................................................................GTACTTTATCGAAGTTGCACTGATGGAAAACATTATGCCATTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTCACAAGTCTCACTTATCAAAGATGCGGGTGGCGCCTTCAGAAACTGCTATGGGTGATGTTCTTCGTGA-G-....................................................................................................................................GTTTCGATCATGAAAATGCTGTGCCATCCCAATATAGTTAATCTTGTTGAGGTGATTGATGATCCAGAAACAGATAACTTCTACATGG......................................................................................TTCTCGAGTACGTGGAAGGAAAATGGGTTTGTGAAGATTCTGGTCCCCCGTGTGTTCTTGAAGAAAATAAAGCACGGCTGTACTTGCGTGATATAGTGTCTGGCTTGATGTATCTGCATTCTCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCATACATGGGGATATTAAGCCAGACAATCTTTTAGTGTCTGCTGCTGGTAAGGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAG..................................................................................................................................................................................................................................................................................................................................GATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGCGTAG........................................................................................................................................GAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAG....................................................................................ATAGTAAATAACCCCATCATTCTCCCCGACGATATGAATCCGTTACTGAAGAATTTATTAGAGGGGCTTCTCTGCAAAG...................................................................................................................................................................................................................................................................................................................ATCCAACACAAAGGCTAACTCTCGAAAGTGTTTGTCAACACGAGTGGTTCCTAGGAGATGAAGGCCCCATCCCTCAGTTCTCGTGTTGGTGCCAGCGCCAAAAGTTGCAGAAAGACGTACAGGATGGGAGCGCAGAGGATACCCCTACTTGAATTAACTGCAGAGTG-TTCTAGTATGTTTATAACGTTCCGTTCTCTCTTCTCAGTTCTTGTAGGAAGATAAAACTAGGATGTCTTTTTTTCCCCAGCAAATTGCA-CTTGCAGGAGCAATCGGATACATGTTATGTGAACGATAGTAGAAAATGAGACGTTCGAGTAAATTTTGTTTGGTTTCTGTCATACTCCGAGAGTACTATTTCAGTTGTAATGGCAGCGAGACATCGCGATATGTTTTCGTTGTTTTTTTGTTGGTGATGAACTGATGATGGTACAAGTTTTGTGTTTTGATACTTAGAAGAAAGCCAACATATTTGTTTTTGTGGATATTTGTATGTGTTTTTTTTATATGAAGAAGAATTTTCATAAAAAAAAAAAAAAAAAA...........................................................................................................................................................................................................AAAACTCGAGG-GGGGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332023" ref_strand="+" ref_description="SGN-U332023        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>aatcttggaaaaagattgtgtttttaattgattttgattgttgttatgaacaattgttaggagaaagattgaagcttttgatgtttttagatttctttcaaagaatcttggaaaaagattgtatttttatgagcaattgttaggagaatgattgaaccatttcatggttttgatttcgtataaagaatattgatagaagattgttttttattgggtttgattgttttatgaacaattgttaggaggatgattgaacctttgaatggttttgattgtctccaaagaatcttggaaagagattggatttttattggttttgattgtttttatggaaatttgtatggagaatgactgaaccctttgatggttttgatttcctataaagcatcttgggaaatagatggtttttattggttttgatcatttttctgaaaacattgtgatccaaatgatagaacctcctgatgtttttgattttctacaaagaattttgggaaaatattgtatttttgtaggttttgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="58153" stop="59276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58453" g_stop="58977" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-U332023" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58453" e_stop="58977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTGGAAAAAGATTGTGTTTTTAATTGATTTTGATTGTTGTTATGAACAATTATTAGGAGAAAGATTGAAGCTTTTGATGTTTTTAGATTTCTTTCAAAGAATCTTGGAAAAAGATTGTATTTTTATGAGCAATTGTTAGGAGAATGATTGAACCATTTGATGGTTTTGATTTCCTATAAAGAATATTGATAGAAGATTGTTTTTTATTGGGTTTGATTGTTTTATGAACAATTGTTAGGAGGATGATTGAACCTTTGAATGGTTTTGATTGTCCCCAAAGAATCTTGGAAAGAGATTGTATTTTTATTGGTTTTGATTGTTTTTATGGAAATTTGTATGGAGAATGACTGAACCCTTTGATGGTTTTGATTTACTATAAAGTGTCTTGGGAAATATATGGTTTTTATTGGTTTTGATCATTTTTCTGAAAACATTGTGATCCAAATGATAGAACCTTTTGATGTTTTTAATTTTCTACAAAGAATTTTGGGAAAATATTGTATTTTTGTAGGTTTTGATTG</genome_strand>
        <mrna_strand>AATCTTGGAAAAAGATTGTGTTTTTAATTGATTTTGATTGTTGTTATGAACAATTGTTAGGAGAAAGATTGAAGCTTTTGATGTTTTTAGATTTCTTTCAAAGAATCTTGGAAAAAGATTGTATTTTTATGAGCAATTGTTAGGAGAATGATTGAACCATTTCATGGTTTTGATTTCGTATAAAGAATATTGATAGAAGATTGTTTTTTATTGGGTTTGATTGTTTTATGAACAATTGTTAGGAGGATGATTGAACCTTTGAATGGTTTTGATTGTCTCCAAAGAATCTTGGAAAGAGATTGGATTTTTATTGGTTTTGATTGTTTTTATGGAAATTTGTATGGAGAATGACTGAACCCTTTGATGGTTTTGATTTCCTATAAAGCATCTTGGGAAATAGATGGTTTTTATTGGTTTTGATCATTTTTCTGAAAACATTGTGATCCAAATGATAGAACCTCCTGATGTTTTTGATTTTCTACAAAGAATTTTGGGAAAATATTGTATTTTTGTAGGTTTTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326731" ref_strand="+" ref_description="SGN-U326731        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | kelch repeat-containing F-box family protein, contains Pfam:PF01344 Kelch motif, Pfam:PF00646 F-box domain | chr5:24365939-24367120 FORWARD | Aliases: MUF9.20, MUF9_20(evalue: 1e-110, score=396) genbank/nr: Cyclin-like(evalue: 7e-113, score=410)">
      <seq>attctctctctaaaaattccggtgagatggtcgccgtaagttcgttttccggcgaatatccgggcgttatagttacctgtgatcggatcgaaacttacttcactccagcaatggaataatcaccacactggtttttatctccggcgacgctaatttgcgactggcagaaataagcagctggatttccgataaggagtcattagcggttggtagtgaattactggtttttggccgtgagttatttgattttgctatatggaaatacagtttgattcaaaacaactgggaaaaatgtgaagggatgaatcatcgtcgttgtctgtttggatcgggtagtcttggttcaatttctattgttgcagggggtagtgacaagaatgggaatgtactaaaatctgccgagctttatgattctttgactggtacatgggaaatactgcccaacatgcattctccccgcagattatgctctggctttttcatggatggaaaattttatgtgataggtgggatgactaatcctaccgattctttgacttgtggggaagagtttgatctacaaacaaggaagtggaggaaaattgagggcatgtatccaaacgtcaatagagctgctcaggcacctcctcttgttgcagttgttaataaccaactatatgcagttgaatatctaaccaacatggttaagaagtatgacaagaaaaataactcatgggaggtattgggaagacttcccgtgagggctgattcttcgaatggttggggtcttgctttcaaagcatgtggtgaagaacttcttgtggtaggtggcaacaggggtccagaaggtgaagctattatattgagttcttgggcaccaaaatcagggtgtaaagacggcaccttggattggaaggtcatcggcctaaaagagcattctggtgtctttgtatacaattgtgccgtgatgggttgttgagactcatccaaccaaatggagaaagaagtcatttgtttcaactgttgtttctagcgtaattccaacacattgtttgatttattagcatttctttttatttaacatctttcaggtgtttgagataagcagttgttcttagctaaaatgtcctcttaactggatggttattttcactcactcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="68342" stop="70918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68642" g_stop="68829" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68830" i_stop="69667" i_length="838">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69668" g_stop="70627" g_length="960"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="1148" r_length="960" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-U326731" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1148</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68642" e_stop="68829"/>
          <exon e_start="69668" e_stop="70627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCTCTCTAAAAATTCCGGTGAGATGGTCGCCGTAAGTTCGTTTTCCGGCGAATATCCCGGCGTTATAGTTACCTGTGATCGGATCGAAACTTACTTCACTCCAGCAATGGAATAATCACCACACTGGTTTTTATCTCCGGCGACGCTAATTTGCGACTGGCAGAAATAAGCAGCTGGATTTCCGGTGAGATCCGAATAGGTTTCCTTACCTGGTTTGGATCCGAATCGCTATCTGTTTTTCCTTACTGAATAATTCATTTCTCATTCAATTTGCCTCTTTTCTCAAGTTTAATAAGCTTTGTTCTGTGTATCTTATATTTTCTGCTTCAAAATAAGGGAAAATTTCTGAATAATATGTGAAATTTGAATCTCAGTGGAAAAAACGCGAGGAAGTTTGAATATTTTGGGTAATATTTCGAACTATTTGATTATAGTTGCTAGAGTTTTGACATACTCATGAAGTTGTAGTAGTTAATAAGCGAGCTGGAGTTCATAGCTTTTTGGTGAGAGAGAAATTGATATTTTGATAAAAAAATTTGGGAATTTTGTGTTTTCAGAAATAAATTTTGTGGCTTTTTTCAAGTGTGTGATTGATTGGAAACTGTGGGTTGTGTATGATAGCATGGCTTCTGAAACTAAGAAGTTGAAGAATGGGTATTTATTTAGGAAGGAGGAAGAGGAGAAGGGGAAGAGAATGAGGTTAGAAGAAGAAGAAGATGATGATGGTCATTGCAAATTTAGATCAAGTGAATCACTTCTTCCAGGCCTACATGATGATGTTGCTTTAACATGTCTTGCTCGGGCATCTAGATCAGATTATGCATCGTTGTCGTGCCTGAATGCTAGGTTTAATTCATTAGTCAAGAGTGGTTATTTATATGAATTAAGGAGGCGGATAAGTGTTGTTGAACACTGGGTTTATATGGTTTGTGATCCTCGGGGTTGGGAGGCTTTTGATCCTTTCAGAAAAAAATGGTTGAGATTACCGAAAATTCCCTGTGATGATTGCTTTAATTATGCAGATAAGGAGTCATTAGCGGTTGGTAGTGAATTACTGGTTTTTGGCCGTGAGTTATTTGATTTTGCTATATGGAAATACAGTTTGATTCAAAACAACTGGGAAAAATGTGAAGGGATGAATCATCGTCGTTGTCTGTTTGGATCGGGTAGTCTTGGTTCAATTTCTATTGTTGCAGGGGGTAGTGACAAGAATGGGAATGTACTAAAATCTGCCGAGCTTTATGATTCTTTGACTGGTACATGGGAAATACTGCCCAACATGCATTCTCCCCGCAGATTATGCTCTGGCTTTTTCATGGATGGAAAATTTTATGTGATAGGTGGGATGACTAATCCTACCGATTCTTTGACTTGTGGGGAAGAGTTTGATCTACAAACAAGGAAGTGGAGGAAAATTGAGGGCATGTATCCAAACGTCAATAGAGCTGCTCAGGCACCTCCTCTTGTTGCAGTTGTTAATAACCAACTATATGCAGTTGAATATCTAACCAACATGGTTAAGAAGTATGACAAGAAAAATAACTCATGGGAGGTATTGGGAAGACTTCCCGTGAGGGCTGATTCTTCGAATGGTTGGGGTCTTGCTTTCAAAGCATGTGGTGAAGAACTTCTTGTGGTAGGTGGCAACAGGGGTCCAGAAGGTGAAGCTATTATATTGAGTTCTTGGGCACCAAAATCAGGGTGTAAAGACGGCACCTTGGATTGGAAGGTCATCGGCCTAAAAGAGCATTCTGGTGTCTTTGTATACAATTGTGCCGTGATGGGTTGTTGAGACTCATCCAACCAAATGGAGAAAGAAGTCATTTGTTTCAACTGTTGTTTCTAGCGTAATTCCAACACATTGTTTGATTTATTAGCATTTCTTTTTATTTAACATCTTTCAGGTGTTTGAGATAAGCAGTTGTTCTTAGCTAAAATGTCCTCTTAACTGGATGGTTATTTTCACTCACTCATTCTGCAGA</genome_strand>
        <mrna_strand>ATTCTCTCTCTAAAAATTCCGGTGAGATGGTCGCCGTAAGTTCGTTTTCCGGCGAATATCCGGGCGTTATAGTTACCTGTGATCGGATCGAAACTTACTTCACTCCAGCAATGGAATAATCACCACACTGGTTTTTATCTCCGGCGACGCTAATTTGCGACTGGCAGAAATAAGCAGCTGGATTTCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGGAGTCATTAGCGGTTGGTAGTGAATTACTGGTTTTTGGCCGTGAGTTATTTGATTTTGCTATATGGAAATACAGTTTGATTCAAAACAACTGGGAAAAATGTGAAGGGATGAATCATCGTCGTTGTCTGTTTGGATCGGGTAGTCTTGGTTCAATTTCTATTGTTGCAGGGGGTAGTGACAAGAATGGGAATGTACTAAAATCTGCCGAGCTTTATGATTCTTTGACTGGTACATGGGAAATACTGCCCAACATGCATTCTCCCCGCAGATTATGCTCTGGCTTTTTCATGGATGGAAAATTTTATGTGATAGGTGGGATGACTAATCCTACCGATTCTTTGACTTGTGGGGAAGAGTTTGATCTACAAACAAGGAAGTGGAGGAAAATTGAGGGCATGTATCCAAACGTCAATAGAGCTGCTCAGGCACCTCCTCTTGTTGCAGTTGTTAATAACCAACTATATGCAGTTGAATATCTAACCAACATGGTTAAGAAGTATGACAAGAAAAATAACTCATGGGAGGTATTGGGAAGACTTCCCGTGAGGGCTGATTCTTCGAATGGTTGGGGTCTTGCTTTCAAAGCATGTGGTGAAGAACTTCTTGTGGTAGGTGGCAACAGGGGTCCAGAAGGTGAAGCTATTATATTGAGTTCTTGGGCACCAAAATCAGGGTGTAAAGACGGCACCTTGGATTGGAAGGTCATCGGCCTAAAAGAGCATTCTGGTGTCTTTGTATACAATTGTGCCGTGATGGGTTGTTGAGACTCATCCAACCAAATGGAGAAAGAAGTCATTTGTTTCAACTGTTGTTTCTAGCGTAATTCCAACACATTGTTTGATTTATTAGCATTTCTTTTTATTTAACATCTTTCAGGTGTTTGAGATAAGCAGTTGTTCTTAGCTAAAATGTCCTCTTAACTGGATGGTTATTTTCACTCACTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321300" ref_strand="+" ref_description="SGN-U321300        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:19809129-19811114 FORWARD | Aliases: F4P12.100(evalue: 7e-36, score=147) genbank/nr: conserved(evalue: 4e-35, score=150)">
      <seq>atatcaacgttggtgcaggggaattcgtagaatcaactcttgcaagaacattcaagcctcattatccaatccctcaccacttgttcaatgttttcgtcattgatcataacacctccacactgtccttatatgtgaagaatcctggtattaactttgtgtaccatccaggacttgctgtcgccggagagactactttgtcatctgttgacactgacgaatatttgggtgcaccactagatcatgaaggattcgacttcattcattggtttagtgaaacagttaaagacggagactatgtcatcctcatgatgaatgctagagcaccagagctaaacattctagcagaactattccaaactggatcaatatgccacgtcgatgagctgttccttcgctgctccgctgcagattgcagaaatgctctttgtggagactgcatgagccttttcaaaactctaaggagaagtggtgtgtttgctcatcaatggtggggagactagagttttgtcaagagttttaagtgcattttatgttgtcttgtgttcaacttttgctttagtgtctgttgggaataaattgaggggaggttgtaggttgaaagttgatactgtaatcttactttctcccttctggaactgcacttgatgtcttgtgtatgtgtccatgtgtgtatgtgagttgcttgtctctaagtttcttttttgagtttatataaaaatatgtgttatgtgttttaagaactatgctttattgtgataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="75010" stop="73646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74710" g_stop="73945" g_length="766"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="766" r_length="766" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-U321300" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74710" e_stop="73945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCAACGTTGGTGCAGGGGAATTCGTAGAATCAACTCTTGCAAGAACATTCAAGCCTCATTATCCAATCCCTCACCACTTGTTCAATGTTTTCGTCATTGATCATAACACCTCCACACTGTCCTTATATGTGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTTTGAGTTTATATAAAAATATGTGTTATGTGTTTTAAGAACTATGCTTTATTGTGATAATTAACAT</genome_strand>
        <mrna_strand>ATATCAACGTTGGTGCAGGGGAATTCGTAGAATCAACTCTTGCAAGAACATTCAAGCCTCATTATCCAATCCCTCACCACTTGTTCAATGTTTTCGTCATTGATCATAACACCTCCACACTGTCCTTATATGTGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTTTGAGTTTATATAAAAATATGTGTTATGTGTTTTAAGAACTATGCTTTATTGTGATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324719" ref_strand="+" ref_description="SGN-U324719        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:19809129-19811114 FORWARD | Aliases: F4P12.100(evalue: 9e-48, score=187) genbank/nr: conserved(evalue: 3e-48, score=195)">
      <seq>ttgattgtgaaagggttcttgtttgttactgttatgattcttgtgtcatttgttcaaatgacacatatgattcagaaatctgaacctataatgttgaattttggtgtatgccctttgaactttgggtctaatgagtatatgaatgtgaccgggttcgttaaacctgtttctggattggggatttcgctgtttggagcttctttgatgaagcgggacgacgaaaaattgaccaaggatgtgtttaaggagctaatggaaaaggatttcttggatttgaatgctaatgcattgtgtgttgggaagaaatcgtcgtttgcagctttggtgctgcgagaattgggactcttgagtgctgttggtgttgatgcacacccgtatttctctcttgtatggagaagatttatgtacgagctcgatcatgagaacaattctttcgattttgtgttctcgagggatctggataaggtcactgtaccagctcttatggtgcttgagattgagcgtgtcttacgtccagggggcaccggtgttatgctcgtgggttctagtagtttctacgcgggtaacttggtaaaaggcaacttgataaggtctgccaccccagtttcgtcgttcttgaagagttctgatgttgtgcacgtatgtggggttggcacgtatactctagtgatgttcaagaaaagatcagagattgttcaatctctcgtgcactctgtgctgcctgctaattgtccttccaatgtgaacaacaagccgtacttgaagcaccttgagccactcgtggaaaagaagcttggacagtttgagacacaaatctcatacttgcccaagttcatgaacatctcatctangaacaaactggtgtatatcaacgttggtgcagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="75875" stop="74392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75575" g_stop="74692" g_length="884"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="884" r_length="884" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-U324719" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75575" e_stop="74692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTGTGAAAGGGTTCTTGTTTGTTACTGTTATGATTCTTGTGTCATTTGTTCAAATGACACATATGATTCAGAAATCTGAACCTATAATGTTGAATTTTGGTGTATGCCCTTTGAACTTTGGGTCTAATGAGTATATGAATGTGACCGGGTTCGTTAAACCTGTTTCTGGATTGGGGATTTCGCTGTTTGGAGCTTCTTTGATGAAGCGGGACGACGAAAAATTGACCAAGGATGTGTTTAAGGAGCTAATGGAAAAGGATTTCTTGGATTTGAATGCTAATGCATTGTGTGTTGGGAAGAAATCGTCGTTTGCAGCTTTGGTGCTGCGAGAATTGGGACTCTTGAGTGCTGTTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTACGAGCTCGATCATGAGAACAATTCTTTCGATTTTGTGTTCTCGAGGGATCTGGATAAGGTCACTGTACCAGCTCTTATGGTGCTTGAGATTGAGCGTGTCTTACGTCCAGGGGGCACCGGTGTTATGCTCGTGGGTTCTAGTAGTTTCTACGCGGGTAACTTGGTAAAAGGCAACTTGATAAGGTCTGCCACCCCAGTTTCGTCGTTCTTGAAGAGTTCTGATGTTGTGCACGTATGTGGGGTTGGCACGTATACTCTAGTGATGTTCAAGAAAAGATCAGAGATTGTTCAATCTCTCGTGCACTCTGTGCTGCCTGCTAATTGTCCTTCCAATGTGAACAACAAGCCGTACTTGAAGCACCTTGAGCCACTCGTGGAAAAGAAGCTTGGACAGTTTGAGACACAAATCTCATACTTGCCCAAGTTCATGAACATCTCATCTAGGAACAAACTGGTGTATATCAACGTTGGTGCAGG</genome_strand>
        <mrna_strand>TTGATTGTGAAAGGGTTCTTGTTTGTTACTGTTATGATTCTTGTGTCATTTGTTCAAATGACACATATGATTCAGAAATCTGAACCTATAATGTTGAATTTTGGTGTATGCCCTTTGAACTTTGGGTCTAATGAGTATATGAATGTGACCGGGTTCGTTAAACCTGTTTCTGGATTGGGGATTTCGCTGTTTGGAGCTTCTTTGATGAAGCGGGACGACGAAAAATTGACCAAGGATGTGTTTAAGGAGCTAATGGAAAAGGATTTCTTGGATTTGAATGCTAATGCATTGTGTGTTGGGAAGAAATCGTCGTTTGCAGCTTTGGTGCTGCGAGAATTGGGACTCTTGAGTGCTGTTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTACGAGCTCGATCATGAGAACAATTCTTTCGATTTTGTGTTCTCGAGGGATCTGGATAAGGTCACTGTACCAGCTCTTATGGTGCTTGAGATTGAGCGTGTCTTACGTCCAGGGGGCACCGGTGTTATGCTCGTGGGTTCTAGTAGTTTCTACGCGGGTAACTTGGTAAAAGGCAACTTGATAAGGTCTGCCACCCCAGTTTCGTCGTTCTTGAAGAGTTCTGATGTTGTGCACGTATGTGGGGTTGGCACGTATACTCTAGTGATGTTCAAGAAAAGATCAGAGATTGTTCAATCTCTCGTGCACTCTGTGCTGCCTGCTAATTGTCCTTCCAATGTGAACAACAAGCCGTACTTGAAGCACCTTGAGCCACTCGTGGAAAAGAAGCTTGGACAGTTTGAGACACAAATCTCATACTTGCCCAAGTTCATGAACATCTCATCTANGAACAAACTGGTGTATATCAACGTTGGTGCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342051" ref_strand="+" ref_description="SGN-U342051        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (CCCH-type) family protein, contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) | chr2:12169128-12172971 REVERSE | Aliases: T1B3.3, T1B3_3(evalue: 7e-49, score=191) genbank/nr: gi|30683900|ref|NP_180412.2| RNA methyltransferase -related [Arabidopsis thaliana] gi|22135822|gb|AAM91097.1| At2g28450/T1B3.3 [Arabidopsis thaliana] gi|25090447|gb|AAN72304.1| At2g28450/T1B3.3 [Arabidopsis thaliana](evalue: 5e-47, score=191)">
      <seq>gacgacggggagaaggcagaggataaagaagagaagcgcaatgacgttatgatgactgaggcgttagacgatgacgaatgttcttcggtttctgggttgtcaaaatgcttggtgaaccttcccatgaagtggagttcagataatttaaggtgtttcctcaaagaacatggtgttacttttaaatcagcaaaaaagaagaaaggcatggctgtaggatttgctacttttgaaaatgcagaacaagtgaaaactgctgtgaaggagttggatggaaagcctgctggcaacaagattttaaaggttggagatattattccgcgggcatttgagagaaaaggtaattcggcaatgtcctcatttcacaacaatcaacaaggtgaaaagcaaaccgaaactggagacggtttggatttgactaaaaaatcagaggaaagtgaggctgaggacccagtgaccagtgattcagttctgaagggtaggtgtgttcgggatgtggtgactcctcttgctaaaatgccatatgctgatcaactggagcagaagaagagctctttgacgcgaactctcaaaacacttactcgaaatgcacgtaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="79251" stop="82255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79551" g_stop="79718" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79719" i_stop="81329" i_length="1611">
            <donor d_prob="0.837" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81330" g_stop="81422" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="261" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81423" i_stop="81509" i_length="87">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81510" g_stop="81824" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="576" r_length="315" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81825" i_stop="81935" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.838" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81936" g_stop="81955" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="596" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-U342051" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79551" e_stop="79718"/>
          <exon e_start="81330" e_stop="81422"/>
          <exon e_start="81510" e_stop="81824"/>
          <exon e_start="81936" e_stop="81955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGACGGGGAGAAGGCAGAGGATAAAGAAGAGAAGTGCAATGACGTTATGATGACTGAGGCGTTAGACGATGACGAATGTTCTTCGGTTTCTGGGTTGTCAAAATGCTTGGTGAACCTTCCCATGAAGTGGAGTTCAGATAATTTAAGGTGTTTCCTCAAAGAACATGTAAGTTGTTTGCTCAAAGATGAATTTTTTTTAGATATTAAACATGTACGTCCAATTCATTTGGTGTTTATTTTCTGATCTTCTTATTATAAGGATATGGAAGTCGAGGACTAAGATAGAAGGTTATTAGATAGTTGAGCTTTGATTAGTTTTCTTATGAGTATTGTTATAATCACTTCCATACTAGCATACGACTTCAGTATTGGGTGTTGTTTCCTTTGCTTCAAAAATCATATTTTTTTTTGTTGCTTCTGTTCTCTTCTACATTGTAGTTAGTATGACTTCTTCACTACAGTATTTGTTTTACATACTTGATTTTTGATATGCCTTACTTGAGCTGAGTGTCTATAAGAGTTACCGCTCTACCTTCACAAGGTAGATAGTGGTTAGGCTGTGTACACATCACCCTCTCCGGACTCCACTTCTGGATTAACATGGGGTATGTTGTTGTTTTGTTATGGTGTATTTTGTGTTTTCTCTTTCAGATACTGGCAATTCCCAGTTTTGAGTAGTGGAAAACCAATAACTGTTGTTATTAAGCTACAGTAAAAAAATTGGGTTGAAGTTTTAGTTCTCACTAATTACGATTTGGAAGCGAATTTCACATATGTGAACTTTGTTAACTCTTGTCTGTTTTTGTCAATTAGACACTAATGGATGCCAATGCATTTATTTTGTGGTGAATAAGATTATGGGAATTCATCAACCAGAAGATTAGTTGTTGGAAACTATAAATAGTCTGAAAGCACTATGCCAAAAGTGTAACGTCAACAATTTGGTCTCTTTCTGATGAAAGGATCATTTTTAATTTTCTGCAAAGTGCAAACCTTTATCCGCTGGGAATACTCTGGTCGAATGAACTTCCAATGGTTCCATTTTTCTTTCCGATCTAGAAGAGTATAGGAAACATTTTAAACATTCCATGGCCTTTTATTCTTATTGTATAATTTATTACAAAATCCTGTGAAATCCTAGTATATTTGGGTTGTACTGAAAATTAAGTGAAAAGATCCACAGGGAGGTGTAAACAGTCAGTATCTTGGAAAGGTTGTAAATTGGAGGGTGGTGGGATCTTTAGGTGCTTTTCCCTTGGTTTTCAGTTAAAGGTTGATGATGAAACAATTATCTGTTTTTTTTTTTTTTAAGTAAAAAATAATCTTGGTGTTTGGGCTAGTTTGTGTGCAACTCCGCTAATTTCATGGGGTAGCTGATTCCCACCAGTATATGTACCAGGTAATTTTGTTCACCAAGGTTAAGACAGTAGGAAGAAACACCTAGTGTTTTTGTCTTCCCTAGGATTTTAACTCGAGACCTCATGGTTCTCAATCCACCTTATTAACACTAGACTGCACCCTTTTATGCTTGAATTCGTTGTTTGTTTAAATAAGGGTTTAATTTTGTAGACTATTTGCGGTAACACTGTAAGCATCTGTAGAAGTACGGATCTTTGCTCTATGGCTGGACAAGTCTGCTCTCCTGGAAATCAGAATTCTGTTTCCCAGAGAACATAATCCTTACTCATATCTTTTGATGTATTGTAATAGTGTTCTTCATCGATTCTTTTTATGACGCAAATGAGATGTTTGTTGGAGTTGACTCCTTAAATCTCAGGGTGTTACTTTTAAATCAGCAAAAAAGAAGAAAGGCATGGCTGTAGGATTTGCTACTTTTGAAAATGCAGAACAAGTGAAAACTGCTGTGAAGGTACTCCTTTGTTGTCTTAATTTTGATTAGAGAGATATGCAGTTATTCTATTATCAGAAACTTTATTTGTCAACTTTAACTATGCAGGAATTGGATGGAAAGCCTGCTGGCAACAAGATTTTAAAGGTTGGAGATATTATTCCGCGGGCATTTGAGAGAAAAGGTAATTCGGCAATGTCCTCATTTCGCACCAATCAACAAGGTGAAAAGCAAACCGAAGCTGGAGACGGTTTGGATTTGACTAAAATATCAGAGGAAACTGAGGCTGAGGACCCAGTGACCAGTGATTCAGTTCTGAAGGGTAGGTGTGTTCGGGATGTGGTGACTCCTCTTGCTAAAATGCCATATGCTGATCAACTGGAGCAGAAGAAGAGCTCTTTGACGCGAACTCTTAAAACACTTGTTAGTATATCTTATCTCCTTATTCCATATTGTTATAATGTCACTTGCCACTTTCAAACAGGGATAGCAAAAATAGACTTTTGACCCTTTTTTCATCTTCTATATGCATAGACTCGAAATGCACGTAAAGC</genome_strand>
        <mrna_strand>GACGACGGGGAGAAGGCAGAGGATAAAGAAGAGAAGCGCAATGACGTTATGATGACTGAGGCGTTAGACGATGACGAATGTTCTTCGGTTTCTGGGTTGTCAAAATGCTTGGTGAACCTTCCCATGAAGTGGAGTTCAGATAATTTAAGGTGTTTCCTCAAAGAACAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTTACTTTTAAATCAGCAAAAAAGAAGAAAGGCATGGCTGTAGGATTTGCTACTTTTGAAAATGCAGAACAAGTGAAAACTGCTGTGAAG.......................................................................................GAGTTGGATGGAAAGCCTGCTGGCAACAAGATTTTAAAGGTTGGAGATATTATTCCGCGGGCATTTGAGAGAAAAGGTAATTCGGCAATGTCCTCATTTCACAACAATCAACAAGGTGAAAAGCAAACCGAAACTGGAGACGGTTTGGATTTGACTAAAAAATCAGAGGAAAGTGAGGCTGAGGACCCAGTGACCAGTGATTCAGTTCTGAAGGGTAGGTGTGTTCGGGATGTGGTGACTCCTCTTGCTAAAATGCCATATGCTGATCAACTGGAGCAGAAGAAGAGCTCTTTGACGCGAACTCTCAAAACACTT...............................................................................................................ACTCGAAATGCACGTAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323661" ref_strand="+" ref_description="SGN-U323661        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (CCCH-type) family protein, contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) | chr2:12169128-12172971 REVERSE | Aliases: T1B3.3, T1B3_3(evalue: 7e-99, score=357) genbank/nr: OSJNBa0094O15.14(evalue: 1e-98, score=363)">
      <seq>agctattctgaactgcatgcagataatgcagttgctgaagcaaaaattcacgattttattaatggacttaagttttgtatttcgccgacggccttctttcaggtgaacacccttgctgcagagaagttatactctcttgcaggggactgggccagcttgggtcctgataccttactttttgacgtttgctgtggaactggaacaattggtcttactctggcaaatcgagttggtatggttgttggcattgaaatgaatgcttctgctgtttctgatgctcaaagaaatgctgaaatcaatgggataaagaactgtagatttatttgtggaaaggcagaggatgtcatgggatctgtactgaaagaatatcttgcttcacctgcgaaagtagatggacttctagatatagaagaaaagaaaaaccaagaaaatactacttctacagagaagactgattctatagttaacgcatcgaaaacagatggggagtcaagtactgggtctgaaaatggtaaaagcatgtgcattgatcaagatactacacctactgagaatatgtattctacggatagagccgctgaaccggaggaaaaaacaggccttgagtgtaccaatggtaaaagcttgtcagaatcttcagcagatgacactacagaaccagcaacccaacttaagaagtgttcatcagataatttgaccactccagtgcaacatttcagcaatgttgttgcaattgtagatcctccacgtgctggacttcatcccactgttatcaaacttttaaggactaactcacgtctaaggaggcttgtttacatttcctgtaatcctgaaagcttggttgcaaacgctattgagctctgcacaccttctccagacgaatcggaaaagggggataataggaacaacagattatggaggaagatgagcagcgctactcttgcacgacataggaccaaatctatgcccaattcagagccttttaaacctgtcaaagccatggctgttgatctttttccacattctcctcattgtgaactggtgatgcttctggagaggtaaatttatctatttccttaagtgataatcttgagtagccatatttatgtgaggaaatagaaatgttcctttagatttgttctctcaatgtggaaaacaagggatgcgctttcgacaaacagttacttgatatctgttactgatggcagttttgaggcaatcttttactcgtggaagatttccataatattgttttgtaactttttccttattttattaccaacttccagttccctgattccctgttcgaaaagaatacctctaatattaatgacagattatgtttatgacctctcatctaatttaagatgctgtaacaatttcaagtgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="85131" stop="90860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85431" g_stop="85532" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85533" i_stop="85643" i_length="111">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85644" g_stop="85778" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="237" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85779" i_stop="86874" i_length="1096">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86875" g_stop="86970" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="333" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86971" i_stop="88783" i_length="1813">
            <donor d_prob="0.752" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88784" g_stop="89218" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="768" r_length="435" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89219" i_stop="89822" i_length="604">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89823" g_stop="89866" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="769" r_stop="812" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89867" i_stop="89980" i_length="114">
            <donor d_prob="0.273" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89981" g_stop="90567" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="813" r_stop="1399" r_length="587" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-U323661" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85431" e_stop="85532"/>
          <exon e_start="85644" e_stop="85778"/>
          <exon e_start="86875" e_stop="86970"/>
          <exon e_start="88784" e_stop="89218"/>
          <exon e_start="89823" e_stop="89866"/>
          <exon e_start="89981" e_stop="90567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTATTCTGAACTGCATGCAGATAATGCAGTTGCTGAAGCAAAAATTCACGATTTTATTAATGGACTTAAGTTTTGTATTTCGCCGACGGCCTTCTTTCAGGTGAGATCATTGCTTATTTTCTCTGTCCTAAGCTGATCCTATTCTTATCTCCCCCCGTCTCTACCTCTCTTGCAGAAGTTGTTTGTCTTTTAAGTTCTTCATTTGGCACAGGTGAACACCCTTGCTGCAGAGAAGTTATACTCTCTTGCAGGGGACTGGGCCAGCTTGGGTCCTGATACCTTACTTTTTGACGTTTGCTGTGGAACTGGAACAATTGGTCTTACTCTGGCAAATCGAGTTGGTATGGTAATGTTCACCACTCTAATTAAATCTTAAATTTTTGTTTTGAATTTGTTTTACGTCACACAAGGTAGGGATAAGGTTTGCATACAATCCACTCTCCCCAGATCCCAATTTTACTTGTGAGATCAGCCTGGTTATGTTGTTGATGAAATTGTTTTGTGTCATGATGTCAACTTTTGGCCCACATATTCACTATATTTACTTTTACCCTATTTTTTAGTGTCTTTATCTGTAATGGTACACACTTGTTATAACTGCCGATCGTCTCCTTTTTGCTGAAGTAGCTATATAAAGTTGCCTATTACTGGTAAAAAACAAGTGTCCTACTTTGATTACTCCAGGAGTTTAAGAGCAATTCTATCATTCTATGTAAATTATTATGTTTAGTTAGGCAAATTAAGCATCAAATTTATGTGTCCCCAATTGAATGTCGTAGTTTGACCTTTTATATATATATATATATATATATATATATTAAGATAAAACTCGATAATGCAGATGTGTAATACAGGCTCATACATTTACTTTTTCATTCTGGAAAATGAAATAAGAGAAAGAGTTGTTTCTAACACTGTAAAGGTTTCATCAAAGGAAATTTTTTTCTTTATATGAAGTGAGTATAGTTTTTGGATGTTCCAAAATGGAAAACTGGATATAAATCCAATTTGTAGGAGTAACAGTTTAAAACTAAAAAATGGAAGTTTGGTTAAAAACAAATATATCAATCCAAATTCAAGAAATACAAGTTAGTAACAGTTTGCATTTGTTTGTATTTATTTGGGCACTCAGTAAAATTGGACGGATATATTTGTTTAATTGTTGCAGGGAGAAAAAAGATTCCAGTTTAAGGAAGTAGTCAAGCATTTGGATAGTCAAGAAGGAAAATGGGTTAAGCTTTTGAAACACGGGAGAATTTTTTTAGGGGTTCATAAGATAATAGAATATCGACAATGCTACCTCATTTTCTGTTACTGGCTTAGTATTTCAATTCTCATTTAAGAGTAGTGCGTCTTATTAAAAAGTAAAATCTATATGCACTTTGAATATGTTTGGATGTCTTGAGATGAGAAGAAGTTCTTCTAACCATCCATTTCTTCAGGTTGTTGGCATTGAAATGAATGCTTCTGCTGTTTCTGATGCTCAAAGAAATGCTGAAATCAATGGGATAAAGAACTGTAGATTTATTTGTGGAAAGGTCAGATTGGACTACCATCATTACTGGTGTTCTCACTTTTTCTCCCTCCTCTATTGTAATGTTGGCCTGTCCTCTGATCTTTGTCGTACTTGGTTTACGTATCTAGTCACTACCAGTGGATTTCGTTCACATTTTATTTTACTTGCTTTCGGTCATTGCCATGAAACTATGCAGTGATGATTTACTTTTGGGAAAATACAGAACGACAGACCCCCTTAAACTAGTCTTTGGTTTTTAAAAAGACAAACTTTGTGGGGGTCCTCCTAGGACTGAGGGTTCAGAAATTTTTCTTCTCAATTATGTGAAGTAAATTAACCCAAGGTTAAGCAAGGCGAACCTGAGTTTGATATGAGTTTTACCATGACTCCCCTATAGTTCCTGTGGGATTTCACTGGGTTTGGTGTTATTGTTGTCCCTATAGTTGTTCGAACTTTGAAGAGTACTAATACCCCCTTTTTGGCCTATGTGGCCATTTTTGGTGTTCCACACAACCGTTGAAGCGCGTGAAGATCTCCAAAATTAGTGTAATTTAGTGTTTCGTTCATAATTCTTTTGCATTTCTATTTTTTTTTAAAAAAAAAACACGGTGCCCGGGCCAGCTTGAGTGCATCTCGCCTAATTCCACATATACTTGCCAGACCTACCTACTACAACAAATACCAAATAACTCTGTCCACCGAGGCTAGAACAAATGAATAGAAATTTTCCTTTTTTCTCTTCTTCCATGAACCACTCCTCCACCTATCCTCCCACCAGTCTTGCACCAGCAAAACTCTGAACATACGCCCAACCAACTCCTGCTAGTACTAGTAGAGAGATGTTTGATAGAAGAAACAAAGGGGAGTAACTTGGGGGGGGGGGGGCGGTATCAATGGAAAAAGTTCTTTTGACCTGTGGCACTATGTCCCAGATATCTGGCTGTTTCGTCTCAGGATGGTATGGGTTCATTTTGAGCAGGTCCAGGCAAAGTTTTAAGTATCTTTTTAGAGATGACGTACTAGTTCTTTTTTTTTTGGTGGTGGGGGGGGGGGCTGTACACCTTATGTTTAGTAAACTAATAATTCATGCAGCTTTTTAAATCAGGTTGACTAAGTCATGTGGTTACTAAATTTAAGTACTGCTTTCAGCTTAGAGCATTAATCAGAAATGGCTATAGGTGGTGCATTTTGTGTTCCAAATTATACTTCTTGCTTCTATGTTGGGGCTTCAAGAATGTTGTCCTTAGTGAGTAACTCCTACATTCCCTGTTTGAGCCAATCTGATTAGACCTGATGTTTGGAGAAACTATAATGTTCCGATGTAGTCATTGTAATGTCGTGCTCAAGGCCAGAGAACTTTTACTGCTTTTGAGGAAATTGTAGAGGTTTGTTGTTTCAATAAAACAATATTATGATTTATGAGCCGCCTTTAGCTTCTTGCTGACCTAGCTATCTGGGAGATGATGTTACTAATCTAGCAGGAGATTCTAACAATCTAAAGTTTTCGTATAACTTCATTAAAGATGTACAAGACTTTTCTAGTTTAGGAAAAAGATATATCGGGTATTTTAAGTTGAGGAACCAAGTGTAAAAGCCTGATGAATCTGCCTTCACATTCTGAAGTATATTTGAACTTGGGTTGGAAAGCTATCTTACTTTTGGAACAACCTGTAGGTAAAGACTAGTTAGCTTTGTTCGGGAGCTCTGGCTTAGATTTCTGTGGAAACAATGACCTGGTTTATCTGTACTTTCCTTCTTTCTGTAGCATAGAGTATCTTTTGTATCCGAATTTGTTCTGCACATTTTAATTCCAAATTTGCATTATGAGATTGCAGGCAGAGGATGTCATGGGATCTGTACTGAAAGAATATCTTGCTTCACCTGCGAAAGTAGATGGACTTCTAGATATAGAAGAAAAGAAAAACCAAGAAAATACTACTTCTACAGAGAAGACTGATTCTATAGTTAACGCATCGAAAACAGATGGGGAGTCAAGTACTGGGTCTGAAAATGGTAAAAGCATGTGCATTGATCAAGATACTACACCTACTGAGAATATGTATTCTACGGATAGAGCCGCTGAACCGGAGGAAAAAACAGGCCTTGAGTGTACCAATGGTAAAAGCTTGTCAGAATCTTCAGCAGATGACACTACAGAACCAGCAACCCAACTTAAGAAGTGTTCATCAGATAATTTGACCACTCCAGTGCAACATTTCAAGAATGTTGTTGCAATTGTAGATCCTCCACGTGCTGGACTTCATCCCACTGTAAGTGATTTCTCTGCTTTCGTCCTTGTTTGTTATCTGGTTTAGTACTTTGTATGCTGGTGCTCTCTAATGTCTGATTGCTCTGTTAGCTACATCGTAAGGCATATGCAACTTGGGAAATCTTCCTTCTGGCGGCCATTGAGAAGATCTGCTTTCCATTTAGGACTCACTTGTTAGACGAGTTTAGTGTAATGTTATTATGACTTTTTATTGTTCAGATAACACCGGAGAATTTTGTATAACATTTCCTCAACTTCTAGTTGCTGCATGCATCAAGTTCTGCATGGAGGCCAGAATCTTGGTGTTACGAGTAAAAGATTACGCTGGAAATGGGAGGATATAGTGTAATAAACAGAAATTCGTGCCATATGTGGATGACAGAAAATTTGGTTCCTTATGATGCTGGTCACCAGTCTCTAAGCTATATGCACGGATGAAGAGTTCATCTTATCGTTGATCTAATCCCTGTTTTATCTGACCCTCAGGATAGATATTACAATGTGATTCCTACATTCTTTGTGCTACTATGTGCTTCCTACGTTTTTGAAATGTTGAGACTTGAAATGAGCTACTTTGTGCTAATTTTTGGTCTCTATGCTTGTAGGTTATCAAACTTTTAAGGACTAACTCACGTCTAAGGAGGCTTGTGTAAGCTCCGTTATGCATTAACTTATCCCTTCTCCATTTCCTTGTTCGCTACTTTGACCTTTTCCACCGTTATTTATAGTCTAACTTTCGTTTATGTTGAACTGTTCTTTTCAGTTACATTTCCTGTAATCCTGAAAGCTTGGTTGCAAACGCTATTGAGCTCTGCACACCTTCTCCAGACGAATCGGAAAAGGGGGATAATAGGAACAACAGATTATGGAGGAAGATGAGCAGCGCTACTCTTGCACGACATAGGACCAAATCTATGCCCAATTCAGAGCCTTTTAAACCTGTCAAAGCCATGGCTGTTGATCTTTTTCCACATTCTCCTCATTGTGAACTGGTGATGCTTTTGGAGAGGTAAATTTATCTGTTTCCTTAAGTGATAATCTTGAGTAGCCATATTTATGTGAGGAAATAGAAATGTTCCTTTATATTTGTTCTCTCAATGTGGAAAACAAGGGATGTGCTTTCGACAAACAGTTACTAGATATCTGTTACTGATGGCAGTTTTGAGGCAATCTTTTACTCGTGGAAGATTTCCATAATATTGTTTTGTAACTTTTTCCTTATTTTATTACCAACTTCCAGTTCCCTGATTCCCTGTTCGAAAAGAATACCTCTAATATTAATGACAGATTATGTTTATGACCTCTCATCTAATTTAAGATGCTGTAACAATTTCAAGTGAAAAGTATTCT</genome_strand>
        <mrna_strand>AGCTATTCTGAACTGCATGCAGATAATGCAGTTGCTGAAGCAAAAATTCACGATTTTATTAATGGACTTAAGTTTTGTATTTCGCCGACGGCCTTCTTTCAG...............................................................................................................GTGAACACCCTTGCTGCAGAGAAGTTATACTCTCTTGCAGGGGACTGGGCCAGCTTGGGTCCTGATACCTTACTTTTTGACGTTTGCTGTGGAACTGGAACAATTGGTCTTACTCTGGCAAATCGAGTTGGTATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGCATTGAAATGAATGCTTCTGCTGTTTCTGATGCTCAAAGAAATGCTGAAATCAATGGGATAAAGAACTGTAGATTTATTTGTGGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGGATGTCATGGGATCTGTACTGAAAGAATATCTTGCTTCACCTGCGAAAGTAGATGGACTTCTAGATATAGAAGAAAAGAAAAACCAAGAAAATACTACTTCTACAGAGAAGACTGATTCTATAGTTAACGCATCGAAAACAGATGGGGAGTCAAGTACTGGGTCTGAAAATGGTAAAAGCATGTGCATTGATCAAGATACTACACCTACTGAGAATATGTATTCTACGGATAGAGCCGCTGAACCGGAGGAAAAAACAGGCCTTGAGTGTACCAATGGTAAAAGCTTGTCAGAATCTTCAGCAGATGACACTACAGAACCAGCAACCCAACTTAAGAAGTGTTCATCAGATAATTTGACCACTCCAGTGCAACATTTCAGCAATGTTGTTGCAATTGTAGATCCTCCACGTGCTGGACTTCATCCCACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCAAACTTTTAAGGACTAACTCACGTCTAAGGAGGCTTGT..................................................................................................................TTACATTTCCTGTAATCCTGAAAGCTTGGTTGCAAACGCTATTGAGCTCTGCACACCTTCTCCAGACGAATCGGAAAAGGGGGATAATAGGAACAACAGATTATGGAGGAAGATGAGCAGCGCTACTCTTGCACGACATAGGACCAAATCTATGCCCAATTCAGAGCCTTTTAAACCTGTCAAAGCCATGGCTGTTGATCTTTTTCCACATTCTCCTCATTGTGAACTGGTGATGCTTCTGGAGAGGTAAATTTATCTATTTCCTTAAGTGATAATCTTGAGTAGCCATATTTATGTGAGGAAATAGAAATGTTCCTTTAGATTTGTTCTCTCAATGTGGAAAACAAGGGATGCGCTTTCGACAAACAGTTACTTGATATCTGTTACTGATGGCAGTTTTGAGGCAATCTTTTACTCGTGGAAGATTTCCATAATATTGTTTTGTAACTTTTTCCTTATTTTATTACCAACTTCCAGTTCCCTGATTCCCTGTTCGAAAAGAATACCTCTAATATTAATGACAGATTATGTTTATGACCTCTCATCTAATTTAAGATGCTGTAACAATTTCAAGTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327565" ref_strand="+" ref_description="SGN-U327565        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger) | chr5:24371050-24374140 FORWARD | Aliases: None(evalue: 5e-28, score=121) genbank/nr: gi|21700893|gb|AAM70570.1| AT5g60580/muf9_230 [Arabidopsis thaliana] >gi|13605863|gb|AAK32917.1| AT5g60580/muf9_230 [Arabidopsis thaliana] (evalue: 3e-26, score=121)">
      <seq>ttttattatacaaagtaacaaacattctggttctctattttttttttaaaaaaaaaactcccattgcacctttttttttaaaaaaaaatcttttgttattttcactcttttcaagattttttcaaattttaagtaaacaaagtgtattattagtagattgtggaatatttggatcatgagtgaagaacataaggagaaaatcatggctgaggttgttgataatgatgaaaaaattggtgtttgtgaaaatgattttgtcatttcaacacctaagatcgagaggtcatccacgattactgaagaaacaacacatgctaaacattggaggaaaccaaacctatccttagacataccttcaagaacgttagacgcgtctcctcaagagttagttcagattaaaagaccattcacgcctacaccgaagagggtgaatttccttttgacacccagtacttgtgattcaagaataactacttcatcaccaggtccctccccgtgtcgtggaaaatcaaccattagaaatcttttccctaaactgagcttgaaatcacgtatgaattcggatacagagaaggtaactgtcccggatacaggtccagctgctgcagttgtgccacaacaagagaaggtatccatttcaaggtcatggtcacttactaaaatgttcacgcctcgcatcaagaggacctcgtctttgcccgttacaccaatttcacattcaaatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="97425" stop="99648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97725" g_stop="97998" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97999" i_stop="98895" i_length="897">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98896" g_stop="99348" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="727" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-U327565" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97725" e_stop="97998"/>
          <exon e_start="98896" e_stop="99348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTATACAAAGTAACAAACATTCTGGTTCTCTATTTTTTTTTTTAAAAAAAAACTCCCATTGCACCTTTTTTTTTTAAAAAAAATCTTTTGTTATTTTCACTCTTTTCAAGATTTTTTCAAATTTTAAGTAAACAAAGTGTATTATTAGTAGATTGTGGAATATTTGGATCATGAGTGAAGAACATAAGGAGAAAATCATGGCTGAGGTTGTTGATAATGATGAAAAAATTGGTGTTTGTGAAAATGATTTTGTCATTTCAACACCTAAGGTGACTATGTTTTCTATTTGATTTGCTTTTTTTTTTTAATTCTTTTGTTTGTTGTTGTGCTTTTCATTTCTTGTTGTAACTGATTCATCTCAATTTTCTTCGTCGAAAAATTATACGGTATATTTACGTCAAACATTATTTTCTTATGTATATATAGTAGATATATCAACCTCAACTTGTATGAGACTGAGGCGTGATTGTTAGTTGTTGTTGTTAGAGGCGAATCTAGGATTTTAGCTCGATATATTTTTTTTGTTCTTAGTATTTAGTCTATTATATTTATTTACTATTTATTGAAAATTTAGTGGATTTTTACACAAATTTATACTTCATCGTGAAAAGTAATGAGTTCAGATGAATCTGTTGTATATATAGTAGATGTACCAACTCCGACTTATTTGAGACTGTCGGGGTATCTTTTGAATTCCCTTAGTGAAAATTCTGGCTCTGAAGCAGTGTTTGTCACATAGTCTTTTGTTTTCTTAATTTTGGTTGGTCTGATTAGAAGGAGAAATGAAAAGATAAGTTTATGAATCTTTTGTTGTTTTTGTGTACTTCTGTGTAACTGTTTTTTTTTTTTTTTAATCTTGGCTGTTTGTTTGTCTATTTGTAACTTGTTGTATGTAACTTTTTTGAAGGGGAACTTTAGAGCGCTACGTTAAAAGTTGTCTCTGTGTGACATATAGGTTACGAGTTTTGAGTGTAAAGACATGTTATTATGTTCTTATTCTAAATGTGGTTTAGGACTTGGGAGTGTTATGAATTTGTAGTGTAATTGGAGATGTTGATCAAGTTCTTGAAGTGAATTGCTTTGTGTTTCGACAAAATTAGGACCCCGAGTGCATTTCTTGATTTACTAGTTTACTGAACGAACTTGTTTGTATCTTCGTTGTACAGATCGAGAGGTCATCCACGATTACTGAAGAAACAACACATGCTAAACATTGGAGGAAACCAAACCTATCCTTAGACATACCTTCAAGAACGTTAGACGCGTCTCCTCAAGAGTTAGTTCAGATTAAAAGACCATTCACGCCTACACCGAAGAGGGTGAATTTCCTTTTGACACCCAGTACTTGTGATTCAAGAATAACTACTTCATCACCAGGTCCCTCCCCGTGTCGTGGAAAATCAACCATTAGAAATCTTTTCCCTAAACTGAGCTTGAAATCACGTATGAATTCGGATACAGAGAAGGTAACTGTCCCGGATACAGGTCCAGCTGCTGCAGTTGTGCCACAACAAGAGAAGGTATCCATTTCAAGGTCATGGTCACTTACTAAAATGTTCACGCCTCGCATCAAGAGGACCTCGTCTTTGCCCGTTACACCAATTTCACATTCAAATCCT</genome_strand>
        <mrna_strand>TTTTATTATACAAAGTAACAAACATTCTGGTTCTCTATTTTTTTTTTAAAAAAAAAACTCCCATTGCACCTTTTTTTTTAAAAAAAAATCTTTTGTTATTTTCACTCTTTTCAAGATTTTTTCAAATTTTAAGTAAACAAAGTGTATTATTAGTAGATTGTGGAATATTTGGATCATGAGTGAAGAACATAAGGAGAAAATCATGGCTGAGGTTGTTGATAATGATGAAAAAATTGGTGTTTGTGAAAATGATTTTGTCATTTCAACACCTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAGAGGTCATCCACGATTACTGAAGAAACAACACATGCTAAACATTGGAGGAAACCAAACCTATCCTTAGACATACCTTCAAGAACGTTAGACGCGTCTCCTCAAGAGTTAGTTCAGATTAAAAGACCATTCACGCCTACACCGAAGAGGGTGAATTTCCTTTTGACACCCAGTACTTGTGATTCAAGAATAACTACTTCATCACCAGGTCCCTCCCCGTGTCGTGGAAAATCAACCATTAGAAATCTTTTCCCTAAACTGAGCTTGAAATCACGTATGAATTCGGATACAGAGAAGGTAACTGTCCCGGATACAGGTCCAGCTGCTGCAGTTGTGCCACAACAAGAGAAGGTATCCATTTCAAGGTCATGGTCACTTACTAAAATGTTCACGCCTCGCATCAAGAGGACCTCGTCTTTGCCCGTTACACCAATTTCACATTCAAATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332799" ref_strand="+" ref_description="SGN-U332799        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>cgtctcgtataggtcctcaaaatcatcaacacgatatagaaaatcctgagacgtttagttggagctagattgtgtcttatgttactgttacagccaaaaaaagagttgagtgatttgttcatacagagttgtggagattgatgtttagtacaagttagaaacttattgtgttctactctaagttgtgcggactcttcactttccatgccacacacccgtgttggattctccaaaaatacactattttttggagtatctgacgcgcatcaatagacatttttgaagagtccgaccaacataggttctactatacgaaaaacagaaatagttgctgttgttgtttgtattgctgaaagaatatgtaaaaagtgaaatgcatatataagtagaagagagtatacaaaggtgttttatgaaaaaattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="101392" stop="107346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101692" g_stop="102112" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102113" i_stop="102566" i_length="454">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102567" g_stop="102585" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="440" r_length="19" r_score="0.842"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-U332799" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101692" e_stop="102112"/>
          <exon e_start="102567" e_stop="102585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCTCGTATAGGTCCTCAAAATCATCAACACGATATAGAAAATCCTGAGACGTTTAGTTGGAGCTAGATTGTGTCTTATGTTACTGTTACAGCCAAAAAAAGAGTTGAGTGATTTGTTCATACAGAGTTGTGGAGATTGATGTTTAGTACAAGTTAGAAACTTATTGTGTTCTACTCTAAGTTGTGCGGACTCTTCACTTTCCATGCCACACACCCGTGTTGGATTCTCCAAAAATACACTATTTTTTGGAGTATCTGACGCGCATCAATAGACATTTTTGAAGAGTCCGACCAACATAGGTTCTACTATACGAAAAACAGAAATAGTTGCTGTTGTTGTTTGTATTGCTGAAAGAATATGTAAAAAGTGAAATGCATATATAAGTAGAAGAGAGTATACAAAGGTGTTTTATGAAAAAATTACGATTTTACGAGTCATCACGAACGATTTTAAGTACAATTTTCATTCCATATGTTTTTAAACTTGTTCACAAGACATGCCGGATGGACAAACTTGCCTTGTTCATCGTTCATCGGATGGGAATGATCAGGTCAATTTGCACCTTGACTAGTTCCACGAGATACCTGTCAGCTTCTACTAGTAACTCTATCCATCAAGAATAAGGCAAATTGGGCGAATGATTCAAAGCACAATTTTTTAGTCTATCTATGTTTAAATTGTTGACAAGTCATATCATATTGACAAAATTCGTTTGCATTATTCAACTTTCCACAAGTCACACATGACTGATAAGACTGAATATATTTTCATTCTACCAATCTCATTAAATTATCGACAAGTCTTATCGTATTGGTCTAATTAGCATGTGTTGTTAAATTATTCTTTAGATGAATTAAAGCATTTTATGTCAAGGTAAAAAAAGAAAAACAAA</genome_strand>
        <mrna_strand>CGTCTCGTATAGGTCCTCAAAATCATCAACACGATATAGAAAATCCTGAGACGTTTAGTTGGAGCTAGATTGTGTCTTATGTTACTGTTACAGCCAAAAAAAGAGTTGAGTGATTTGTTCATACAGAGTTGTGGAGATTGATGTTTAGTACAAGTTAGAAACTTATTGTGTTCTACTCTAAGTTGTGCGGACTCTTCACTTTCCATGCCACACACCCGTGTTGGATTCTCCAAAAATACACTATTTTTTGGAGTATCTGACGCGCATCAATAGACATTTTTGAAGAGTCCGACCAACATAGGTTCTACTATACGAAAAACAGAAATAGTTGCTGTTGTTGTTTGTATTGCTGAAAGAATATGTAAAAAGTGAAATGCATATATAAGTAGAAGAGAGTATACAAAGGTGTTTTATGAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321213" ref_strand="+" ref_description="SGN-U321213        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | yrdC protein-related | chr5:24374251-24375976 FORWARD | Aliases: None(evalue: 1e-49, score=194) genbank/nr: gi|9759323|dbj|BAB09832.1| gene_id:MUP24.1~pir||T31603~similar to unknown protein [Arabidopsis thaliana](evalue: 8e-48, score=194)">
      <seq>tgcagcagacccacaaaaatagcccaaattctgcctattttcaactctttcatatacccttctcgaggtgctgtttcatattcactcatcgggtggaaaaaattggatttttgaacttgtgggcaagaagtaggaagggtttaagtgcagttagtgtgaagaaaatgggttggagtttggagaatcctgatggggatgtagagactaagaaggctactgtatctcctgcagcagaagattatggtcaagaggcaattgaagctatcagggctgggaaagtcatagctgttcccactgacacactatatggctttgcttgtgatgcttgatcatctgcctcttggcttgcttgactgcctgcttcctggacccgtgactttggtcttaaggcgaggtgagtcaagtatccttgagaagtcattaaaccctggattagagagcataggggttcgagtgccagactgtaacttcatcagggtgattgctcgtggttctagaagtgcccttgcacttactagtgcaaatctcagcggacaacccagtagcatagacatcaaagattttgagaacctctgggagcactgtgcatatgtctatgatggcggaattcttccagctgggcgagctggatcgacagtggtggatcttactaagctggggaagtacaagattctaagacctggaagtgcaaaggaagagaccattgctatccttgaaagacactcactactggaagatggaactggagattagcaagccgctgctcaagttgaagctgttcagccagacgagcctcgtgcctgagtttgtaaagtacaactcataaaaacttgattcgatgcagttgtgcttcctttgtgtctatggaaaggtttcgtccttctatttgaagtcgagtagaggagaggaacacacctttgttcatgcattgttgagtttgtcaatggaagtgttccagtcagttactaaataggattcaaagtgtgttttatgatttcccatttgagagccatttacaatgtaatgaatcatgttgtaacacgaaaatatcatatttttttaattttttgacttctgacattcattagtgtcttgcttatgaataatgaatggaaaaaattctatttatttctcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="102806" stop="108007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103106" g_stop="103195" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103196" i_stop="103807" i_length="612">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103808" g_stop="104045" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="328" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104046" i_stop="105958" i_length="1913">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105959" g_stop="106024" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="394" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106025" i_stop="106265" i_length="241">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106266" g_stop="106557" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="686" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106558" i_stop="107254" i_length="697">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107255" g_stop="107715" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="1147" r_length="461" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-U321213" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1147</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103106" e_stop="103195"/>
          <exon e_start="103808" e_stop="104045"/>
          <exon e_start="105959" e_stop="106024"/>
          <exon e_start="106266" e_stop="106557"/>
          <exon e_start="107255" e_stop="107715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCAGACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCCTTCTCGAGGTGCTGTTTCATATTCACTCATCGTTAGTCTTCTGCCTCTTTTCTTCTTTTATTATGTACTCTTTTATGTTCATGTTTTACAACTTTATCTGTGGAATAAAAATGCTTTCTTGGAGAAAAATTAAGTGATTTTTGAAATATTTGGTTAGTAAAGAATATTTGTATATAATCTAGACAAATACTACGAGGATGTGATCGAGTATAGGTGTGGGGGTGATGGGGATGGGATATGAGAGGATGGGGGTGGAGTATTGTGGAGAGAGTATGCTTGGTATGAATAAAAATGCAATCTTGGAACATAAGTGATATATTTTTTATGTTGACCAGTAAAAAGACTTATTTTCTTGTATTCAGTACATATTTAGAGAATATTATTCTAAAATTATTTGTATATAATCTAGTGGATACTATGAGGGTGAGCTGGGATACTATGAGGGTGAGCTGGGTGCAGGTGTGTGGGGGTGGAGTCTATGAGAGGATGGGGTGAGTATGGTGGAGATAGTGTGGGGGGTGGGTGGTCTCCTAGGCTCCTACCAAACATACCCTTAGTCTTTCTTATAATTTTTGTTTCCAGTTTAGCTTAGACCTTACAAAGATTAAAACTTTTTGGTTTCTTGTTTTACTTTTGTGTTCAGGGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTGGTATGCCGCTACTTCGCTATTTTTCATTTGTTGATAAGTTTAAGACATCAAAAATGTTAGATACATGGTAATGTAATTTTATGAGTATGCTTGGTACAAATAAATTCGGAAACAACCTCTCTATCCATAAACGTAGGGGTAAGGACTGTGCTACCCTTCCTGATACAAAAACTCTTCCAAAACTCATTTAAATACCTCAATATTGAGCCAATAGTCCTACTAACCCAAAAGTCAGGTTACAAAACTTATGGAACTGATGAAATTCCATTCTGAGACTACACAAGGGATTGCAACTTAGAATGTTGTCGTTGCTGCTTGGTACAAATAATCTGTTAGTACTCTTGAGTCTTGGGTTTTGGTCTACTTTATATTGGAAAAAAAAAAGAAATAGATCGGAGATGGTGTTATCAAAAGTGCGTGTAAACCCTGAAGTGAGGCGCAAAACATGTTGAGTGCTTCCCCTTGCTTTGCAGGCGCATCAGTCCTTGTCAATGAGGGTAATTTGGAAGAGGCGATACTAAATAATTGATATTTCAGCTTATCGATTTTGTTTTCTTTTTTCATTTTCTTTGTTCAAGTACTTGTTATGCATGTTATAATTATTAGTCTTGGACTAAACATACATTTTTGTAATTCTTTTTCCACTTGTGCCTTTCTGTATTAAAACCCACACTTTATTTTTGCACTGAAAGCCTCAACAAACCTTAGAGGTTGTTCTTTCCTTTTTGCTGTTGATAACACTGATTAATGAGGAAAGGGTAGAATTGAATTAAACATTAGTCTTGGAGAGTAAACGTAAGAATTGTGCCTCAAAGTACTCTAAAGTGTGTTGTTGATATTTTTGCCTTAGGTTCAATGTTATTCATTAGGAGCTTTGATTTTGCTTAGACGCCCGAATAATCTTTATTAAATTTCTTTGCGTGAAAAGATTGACCTTTGATTCCATTGCCTTCACTTTGAAAAGCCAGTAGAAGAAACAACTAGGATTGGTAGGAGGTCAAGGCATGACCTCTCTACTGGTAGTAAACAATTTAATATCATGAAGCCTATGTGGACAACGAGATGTTGTACAAATCAGAACAATTAGAAATTTCAGTGCTAAAAGAATAGAGGAAACGCTCTGGAAGCAAAACTCCTAGGCACACCTTTGTTACACTTAAGTAAATGGGTTCTCTAGTCTATGAATTAAGCTGTGTTTTGATATTGGTATGATTTGAAGTCACTACACCGCATTGGTTTCAAATTGAATATGATGCTTTGGCTGAGGGCAAGGTACAAAATCATCAAACAGCGTCTCAGGAATCTCTAGGAGACAGATTAACCAACTACATAGAAGCAGTAGAAGGTGGTTCTATTAGTGATAGTCAAACAGGCTTTTAGCTGACTATGAAACTGAGAACATAAGTGACATTGAGGAGAGCAATCAAGGCCATGACTCCTTAAGGAAGATTAATGGCATTTTTCTTTGTGCTAGTGAGTTCATGTAGTCTTCCGTATGAGCAACAAAGAAAGAAGAAGGCTTTTCTCTTTGCGTGAAATTTGTATATGGAGTTCATCCTTTTTCATTGTTTAGCAATCAAAGTGGCGATTTACATGATTTTATATATATATATTTTAAAAAGCCTATCCTTCATAGACTATTGCATTAACTTCTTGACTGAACAGAAAGTTTCAAACATTCTTGTTGTTTCACTGTTTGTTTGACCTAGAAATTTATCAAAAAGACAATTTACTTTGTTGTTTATTTATCTAAGTCGTATTTATGGGAAGTCTGATTTAATTCTATATGATGAATTGCTGTAGTTCTGCTGAGGCAGTGAATCGTATTTATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATGACATAAAACATTATGCTGTGACAGATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAGGTTAGTAGCTAAATGTTATGTCAACAAATGCTGCATTCACGGGTATCCTTCAGAGGTTAAATATCTTAAGTTAGTACTGCTTCATTGTAACATACTAACTGTAAGTAACTTGTTGATACACTTGAATAAGGAGCAAGTCGCTCTCCTAGGCAAACACTGGCCCATGTTCAGTAATTTCAGAAACTTTTATCTTTCTCTTATGAATCTTCTGTACTGGATGCTGAATTCAGATATTCTGCAGGTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTAAGACCTGGAAGGTAAGCTTCCAGTACCTAAGGACTAGGGTGCAAACTACTGTTGAGATGAACTGATATCTTTATGAGAACGCTTCAAAAAAGTAGATTTCTTAAATGAATGAGTTGAACCAGAACACTTGAGCTGATGCTTATTAATTTAGAAAAGTAGAGATCCCAGATTCTTAAGCATGGTTCAAATTGGCATTTGTATAGAAGTCGTCTTATTAATCATGTGTCGGTAAGGGCAATGAAAGCATCAGGTTCCCTGGATATGTCACCTCCCACCAGCAACAAGTACCAATACCAGTACCAGATAACTATATCCACCAAGGCTAGGACCGATGAGAAGAAATTGGAAAACGCTATCACTTTTCACTCAATTCATTCATCTAACAAATGTCATCTCTCTTTTGCCTAGTTCATTTTATTGCTTATGTTGTTCTAGTCCATATATCTTGATTGTAGCCATGACATCTTCCCTATGCTTAAACCACAAAAAAAAAAAAAAAAACTTTAAGCCTTCGAGGGACAAAACTATCTTCATGCATCTAGATTTCTGTCTGCTGCAATTCCTCTAGACAATGTCTGTCATGCACTTGTTGTACACAATTATTTTTTGTGTTGTCGAAACAACTAGTCATCATTTTTTACCGTTTGGACTAGAAAGTCATTATGCTACTGCTGTGCTTAAATTTGATGAATACTCTACTTATGACAGTGCAAAGGAAGAGACCATTGCTATCCTTGAAAGACACTCACTACTGGAAGATGGAACTGGAGATTAGCAAGCCGCTGCTCAAGTTGAAGCTGTTCAGCCAGACGAGCCTCGTGCCTGAGTTTGTAAAGTACAACTCATAAAAACTTGATTCGATGCAGTTGTGCTTCCTTTGTGTCAATGGAAAGGTTTCGTCCTTCTATTTGAAGTCGAGTAGAGGAGAGGAACACACCTTTGTTCATGCATTGTTGAGTTTGTCAATGGAAGTGTTCCAGTCAGTTACTAAATAGGATTCAAAGTGTGTTTTATGATTTCCCATTTGAGAGCCATTTACAATGTAATGAATCATGTTGTAACACGAAAATATCATATTTTTTTAATTTTTTGACTTCTGACATTCATTAGTGTCTTGCTTATGAATAATGAATGGAAAAAATTCTATTTATTTCTCAAAAATGTCAAAT</genome_strand>
        <mrna_strand>TGCAGCAGACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCCTTCTCGAGGTGCTGTTTCATATTCACTCATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAG.................................................................................................................................................................................................................................................GTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTAAGACCTGGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGGAAGAGACCATTGCTATCCTTGAAAGACACTCACTACTGGAAGATGGAACTGGAGATTAGCAAGCCGCTGCTCAAGTTGAAGCTGTTCAGCCAGACGAGCCTCGTGCCTGAGTTTGTAAAGTACAACTCATAAAAACTTGATTCGATGCAGTTGTGCTTCCTTTGTGTCTATGGAAAGGTTTCGTCCTTCTATTTGAAGTCGAGTAGAGGAGAGGAACACACCTTTGTTCATGCATTGTTGAGTTTGTCAATGGAAGTGTTCCAGTCAGTTACTAAATAGGATTCAAAGTGTGTTTTATGATTTCCCATTTGAGAGCCATTTACAATGTAATGAATCATGTTGTAACACGAAAATATCATATTTTTTTAATTTTTTGACTTCTGACATTCATTAGTGTCTTGCTTATGAATAATGAATGGAAAAAATTCTATTTATTTCTCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321214" ref_strand="+" ref_description="SGN-U321214        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | yrdC protein-related | chr5:24374251-24375976 FORWARD | Aliases: None(evalue: 5e-87, score=318) genbank/nr: gi|42573748|ref|NP_974970.1| yrdC protein-related [Arabidopsis thaliana] (evalue: 4e-85, score=318)">
      <seq>gggtggaaaaaattggatttttgaacttgtgggcaagaagtaggaagggtttaagtgcagttagtgtgaagaaaatgggttggagtttggagaatcctgatggggatgtagagactaagaaggctactgtatctcctgcagcagaagattatggtcaagaggcaattgaagctatcagggctgggaaagtcatagctgttcccactgacacactatatggctttgcttgtgatgcttgttctgctgaggcagtgaatcgtatttatgagatcaaaggacgtaagcatacaagtcctctggctatttgtgttggcgatgttcatgacataaaacattatgctgtgacagatcatctgcctcttggcttgcttgactgcctgcttcctggacccgtgactttggtcttaaggcgaggtgagtcaagtatccttgagaagtcattaaaccctggattagagagcataggggttcgagtgccagactgtaacttcatcagggtgattgcccgtggttctagaagtgcccttgcacttactagtgcaaatctcagcggacaacctattagcatagacatcaaagattttgagaacctctgggagcactgtgcatatgtctatgatggcggaattcttccagctgggcgagctggatcgacagtggtggatcttactaagctggggaagtacaagattctaagacctggaagtgcaaaggaagagaccattgctatccttgaaagacactcactactggaagatggaactggagattagcaagccgctgctcaagttgaagctgttcagccagacgagcctcgtgcctgagtttgtaaagtacaactcataaaaacttgattcgatgcagttgtgcttcctttgtgtctatggaaaggtttcgtccttctatttgaagtcgagtagaggagaggaacacacctttgttcatgcattgttgagtttgtcaatggaagtgttccagtcagttactaaataggattcaaagtgtgttttatgatttcccatttgagagccatttacaatgtaatgaatcatgttgtaacacgaaaatatcatatttttttaattttttgacttctgacattcattagtgtcttgcttatgaataatgaatggaaaaaattctatttatttctcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="103508" stop="108007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103808" g_stop="104045" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104046" i_stop="105848" i_length="1803">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105849" g_stop="106024" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="414" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106025" i_stop="106265" i_length="241">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106266" g_stop="106557" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="706" r_length="292" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106558" i_stop="107254" i_length="697">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107255" g_stop="107715" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="1167" r_length="461" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-U321214" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1167</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103808" e_stop="104045"/>
          <exon e_start="105849" e_stop="106024"/>
          <exon e_start="106266" e_stop="106557"/>
          <exon e_start="107255" e_stop="107715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTGGTATGCCGCTACTTCGCTATTTTTCATTTGTTGATAAGTTTAAGACATCAAAAATGTTAGATACATGGTAATGTAATTTTATGAGTATGCTTGGTACAAATAAATTCGGAAACAACCTCTCTATCCATAAACGTAGGGGTAAGGACTGTGCTACCCTTCCTGATACAAAAACTCTTCCAAAACTCATTTAAATACCTCAATATTGAGCCAATAGTCCTACTAACCCAAAAGTCAGGTTACAAAACTTATGGAACTGATGAAATTCCATTCTGAGACTACACAAGGGATTGCAACTTAGAATGTTGTCGTTGCTGCTTGGTACAAATAATCTGTTAGTACTCTTGAGTCTTGGGTTTTGGTCTACTTTATATTGGAAAAAAAAAAGAAATAGATCGGAGATGGTGTTATCAAAAGTGCGTGTAAACCCTGAAGTGAGGCGCAAAACATGTTGAGTGCTTCCCCTTGCTTTGCAGGCGCATCAGTCCTTGTCAATGAGGGTAATTTGGAAGAGGCGATACTAAATAATTGATATTTCAGCTTATCGATTTTGTTTTCTTTTTTCATTTTCTTTGTTCAAGTACTTGTTATGCATGTTATAATTATTAGTCTTGGACTAAACATACATTTTTGTAATTCTTTTTCCACTTGTGCCTTTCTGTATTAAAACCCACACTTTATTTTTGCACTGAAAGCCTCAACAAACCTTAGAGGTTGTTCTTTCCTTTTTGCTGTTGATAACACTGATTAATGAGGAAAGGGTAGAATTGAATTAAACATTAGTCTTGGAGAGTAAACGTAAGAATTGTGCCTCAAAGTACTCTAAAGTGTGTTGTTGATATTTTTGCCTTAGGTTCAATGTTATTCATTAGGAGCTTTGATTTTGCTTAGACGCCCGAATAATCTTTATTAAATTTCTTTGCGTGAAAAGATTGACCTTTGATTCCATTGCCTTCACTTTGAAAAGCCAGTAGAAGAAACAACTAGGATTGGTAGGAGGTCAAGGCATGACCTCTCTACTGGTAGTAAACAATTTAATATCATGAAGCCTATGTGGACAACGAGATGTTGTACAAATCAGAACAATTAGAAATTTCAGTGCTAAAAGAATAGAGGAAACGCTCTGGAAGCAAAACTCCTAGGCACACCTTTGTTACACTTAAGTAAATGGGTTCTCTAGTCTATGAATTAAGCTGTGTTTTGATATTGGTATGATTTGAAGTCACTACACCGCATTGGTTTCAAATTGAATATGATGCTTTGGCTGAGGGCAAGGTACAAAATCATCAAACAGCGTCTCAGGAATCTCTAGGAGACAGATTAACCAACTACATAGAAGCAGTAGAAGGTGGTTCTATTAGTGATAGTCAAACAGGCTTTTAGCTGACTATGAAACTGAGAACATAAGTGACATTGAGGAGAGCAATCAAGGCCATGACTCCTTAAGGAAGATTAATGGCATTTTTCTTTGTGCTAGTGAGTTCATGTAGTCTTCCGTATGAGCAACAAAGAAAGAAGAAGGCTTTTCTCTTTGCGTGAAATTTGTATATGGAGTTCATCCTTTTTCATTGTTTAGCAATCAAAGTGGCGATTTACATGATTTTATATATATATATTTTAAAAAGCCTATCCTTCATAGACTATTGCATTAACTTCTTGACTGAACAGAAAGTTTCAAACATTCTTGTTGTTTCACTGTTTGTTTGACCTAGAAATTTATCAAAAAGACAATTTACTTTGTTGTTTATTTATCTAAGTCGTATTTATGGGAAGTCTGATTTAATTCTATATGATGAATTGCTGTAGTTCTGCTGAGGCAGTGAATCGTATTTATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATGACATAAAACATTATGCTGTGACAGATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAGGTTAGTAGCTAAATGTTATGTCAACAAATGCTGCATTCACGGGTATCCTTCAGAGGTTAAATATCTTAAGTTAGTACTGCTTCATTGTAACATACTAACTGTAAGTAACTTGTTGATACACTTGAATAAGGAGCAAGTCGCTCTCCTAGGCAAACACTGGCCCATGTTCAGTAATTTCAGAAACTTTTATCTTTCTCTTATGAATCTTCTGTACTGGATGCTGAATTCAGATATTCTGCAGGTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTAAGACCTGGAAGGTAAGCTTCCAGTACCTAAGGACTAGGGTGCAAACTACTGTTGAGATGAACTGATATCTTTATGAGAACGCTTCAAAAAAGTAGATTTCTTAAATGAATGAGTTGAACCAGAACACTTGAGCTGATGCTTATTAATTTAGAAAAGTAGAGATCCCAGATTCTTAAGCATGGTTCAAATTGGCATTTGTATAGAAGTCGTCTTATTAATCATGTGTCGGTAAGGGCAATGAAAGCATCAGGTTCCCTGGATATGTCACCTCCCACCAGCAACAAGTACCAATACCAGTACCAGATAACTATATCCACCAAGGCTAGGACCGATGAGAAGAAATTGGAAAACGCTATCACTTTTCACTCAATTCATTCATCTAACAAATGTCATCTCTCTTTTGCCTAGTTCATTTTATTGCTTATGTTGTTCTAGTCCATATATCTTGATTGTAGCCATGACATCTTCCCTATGCTTAAACCACAAAAAAAAAAAAAAAAACTTTAAGCCTTCGAGGGACAAAACTATCTTCATGCATCTAGATTTCTGTCTGCTGCAATTCCTCTAGACAATGTCTGTCATGCACTTGTTGTACACAATTATTTTTTGTGTTGTCGAAACAACTAGTCATCATTTTTTACCGTTTGGACTAGAAAGTCATTATGCTACTGCTGTGCTTAAATTTGATGAATACTCTACTTATGACAGTGCAAAGGAAGAGACCATTGCTATCCTTGAAAGACACTCACTACTGGAAGATGGAACTGGAGATTAGCAAGCCGCTGCTCAAGTTGAAGCTGTTCAGCCAGACGAGCCTCGTGCCTGAGTTTGTAAAGTACAACTCATAAAAACTTGATTCGATGCAGTTGTGCTTCCTTTGTGTCAATGGAAAGGTTTCGTCCTTCTATTTGAAGTCGAGTAGAGGAGAGGAACACACCTTTGTTCATGCATTGTTGAGTTTGTCAATGGAAGTGTTCCAGTCAGTTACTAAATAGGATTCAAAGTGTGTTTTATGATTTCCCATTTGAGAGCCATTTACAATGTAATGAATCATGTTGTAACACGAAAATATCATATTTTTTTAATTTTTTGACTTCTGACATTCATTAGTGTCTTGCTTATGAATAATGAATGGAAAAAATTCTATTTATTTCTCAAAAATGTCAAAT</genome_strand>
        <mrna_strand>GGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGCTGAGGCAGTGAATCGTATTTATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATGACATAAAACATTATGCTGTGACAGATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAG.................................................................................................................................................................................................................................................GTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCCCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCTATTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTAAGACCTGGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGGAAGAGACCATTGCTATCCTTGAAAGACACTCACTACTGGAAGATGGAACTGGAGATTAGCAAGCCGCTGCTCAAGTTGAAGCTGTTCAGCCAGACGAGCCTCGTGCCTGAGTTTGTAAAGTACAACTCATAAAAACTTGATTCGATGCAGTTGTGCTTCCTTTGTGTCTATGGAAAGGTTTCGTCCTTCTATTTGAAGTCGAGTAGAGGAGAGGAACACACCTTTGTTCATGCATTGTTGAGTTTGTCAATGGAAGTGTTCCAGTCAGTTACTAAATAGGATTCAAAGTGTGTTTTATGATTTCCCATTTGAGAGCCATTTACAATGTAATGAATCATGTTGTAACACGAAAATATCATATTTTTTTAATTTTTTGACTTCTGACATTCATTAGTGTCTTGCTTATGAATAATGAATGGAAAAAATTCTATTTATTTCTCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>18</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4187" PGL_stop="5593"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4187" e_stop="4433"/>
            <exon e_start="4513" e_stop="4638"/>
            <exon e_start="5274" e_stop="5433"/>
            <exon e_start="5512" e_stop="5593"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="0.968"/>
          <exon-intron don_prob="0.998" acc_prob="0.911" e_score="0.984"/>
          <exon-intron don_prob="0.999" acc_prob="0.791" e_score="0.994"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="4187" e_stop="4433" e_length="247"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4434" i_stop="4512" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="4513" e_stop="4638" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.911">
            <gDNA_intron_boundary i_start="4639" i_stop="5273" i_length="635"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="5274" e_stop="5433" e_length="160"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.791">
            <gDNA_intron_boundary i_start="5434" i_stop="5511" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="5512" e_stop="5593" e_length="82"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4187" stop="4433"/>
              <exon start="4513" stop="4638"/>
              <exon start="5274" stop="5433"/>
              <exon start="5512" stop="5593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329740" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTTTCTCTCTCCTCCCTTTTTCCCGTCCGCCATCATTTTCTACTTCTCCGAAATCCTCCGTCACCGGAAAAATAAGTTAACCGGCACCGAAAATGAGCGTTATCGACATTATCCTCAGAGTCGATACGATATGTAAGAAGTACGAAAAGTACGATGTCGAGAAGCATTCAGCTAATGATTCCCCCGGCGATGCCTTCGCTCGCCTTTATTCGTCCTTCGAATCTCAAATTGACGCTACTTCTGAG : AAAGCAGAGATGGCTGCTATGGAAACTAACAGAGCTAAAGCGGTGGCTATGAAGGCGGAGGTACGACGAACAAAGGCGCGTTTAATGGATGAAATCAAAAAATTGCACAAACTTGCTCAGAAAAAG : GTTAAAGGACTATCCCAAGAGGAACTGGAGACTCGTGGTGATTTGGTACATATGCTATCGGAGAGAATTCAGGCAATACCTGATGGGAGTATAAATGCAGCCAAAACAACAGGAGGTCGCGGGACTTCATCATTCAACAAAAATATAAAATTTGACTCAG : AGGGACAGTTCAACGAGGGTTTCTACGAGCAAACTGAAGAGGGCACTCATTTTAGATCTGAGTATGAGATACGGAAAATGAA</gDNA_template>
            <first_frame> K  F  L  S  P  P  F  F  P  S  A  I  I  F  Y  F  S  E  I  L  R  H  R  K  N  K  L  T  G  T  E  N  E  R  Y  R  H  Y  P  Q  S  R  Y  D  M  *  E  V  R  K  V  R  C  R  E  A  F  S  *  *  F  P  R  R  C  L  R  S  P  L  F  V  L  R  I  S  N  *  R  Y  F  *   : E  S  R  D  G  C  Y  G  N  *  Q  S  *  S  G  G  Y  E  G  G  G  T  T  N  K  G  A  F  N  G  *  N  Q  K  I  A  Q  T  C  S  E  K   : G  *  R  T  I  P  R  G  T  G  D  S  W  *  F  G  T  Y  A  I  G  E  N  S  G  N  T  *  W  E  Y  K  C  S  Q  N  N  R  R  S  R  D  F  I  I  Q  Q  K  Y  K  I  *  L  R :   G  T  V  Q  R  G  F  L  R  A  N  *  R  G  H  S  F  *  I  *  V  *  D  T  E  N  E </first_frame>
            <second_frame>  S  F  S  L  L  P  F  S  R  P  P  S  F  S  T  S  P  K  S  S  V  T  G  K  I  S  *  P  A  P  K  M  S  V  I  D  I  I  L  R  V  D  T  I  C  K  K  Y  E  K  Y  D  V  E  K  H  S  A  N  D  S  P  G  D  A  F  A  R  L  Y  S  S  F  E  S  Q  I  D  A  T  S  E  :  K  A  E  M  A  A  M  E  T  N  R  A  K  A  V  A  M  K  A  E  V  R  R  T  K  A  R  L  M  D  E  I  K  K  L  H  K  L  A  Q  K  K  :  V  K  G  L  S  Q  E  E  L  E  T  R  G  D  L  V  H  M  L  S  E  R  I  Q  A  I  P  D  G  S  I  N  A  A  K  T  T  G  G  R  G  T  S  S  F  N  K  N  I  K  F  D  S   : E  G  Q  F  N  E  G  F  Y  E  Q  T  E  E  G  T  H  F  R  S  E  Y  E  I  R  K  M   </second_frame>
            <third_frame>   V  S  L  S  S  L  F  P  V  R  H  H  F  L  L  L  R  N  P  P  S  P  E  K  *  V  N  R  H  R  K  *  A  L  S  T  L  S  S  E  S  I  R  Y  V  R  S  T  K  S  T  M  S  R  S  I  Q  L  M  I  P  P  A  M  P  S  L  A  F  I  R  P  S  N  L  K  L  T  L  L  L  R :   K  Q  R  W  L  L  W  K  L  T  E  L  K  R  W  L  *  R  R  R  Y  D  E  Q  R  R  V  *  W  M  K  S  K  N  C  T  N  L  L  R  K  R :   L  K  D  Y  P  K  R  N  W  R  L  V  V  I  W  Y  I  C  Y  R  R  E  F  R  Q  Y  L  M  G  V  *  M  Q  P  K  Q  Q  E  V  A  G  L  H  H  S  T  K  I  *  N  L  T  Q  :  R  D  S  S  T  R  V  S  T  S  K  L  K  R  A  L  I  L  D  L  S  M  R  Y  G  K  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4269" stop="4433"/>
                    <exon start="4513" stop="4638"/>
                    <exon start="5274" stop="5433"/>
                    <exon start="5512" stop="5591"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAPKMSVIDIILRVDTICKKYEKYDVEKHSANDSPGDAFARLYSSFESQIDATSEKAEMAAMETNRAKAVAMKAEVRRTKARLMDEIKKLHKLAQKKVKGLSQEELETRGDLVHMLSERIQAIPDGSINAAKTTGGRGTSSFNKNIKFDSEGQFNEGFYEQTEEGTHFRSEYEIRKM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="23675" PGL_stop="21784"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23675" e_stop="23119"/>
            <exon e_start="21989" e_stop="21784"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23675" e_stop="23119" e_length="557"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="23118" i_stop="21990" i_length="1129"/>
          </intron>
          <exon e_serial="2" e_score="0.976">
            <gDNA_exon_boundary e_start="21989" e_stop="21784" e_length="206"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23675" stop="23119"/>
              <exon start="21989" stop="21784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326707" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAACTACATCATTTCCTTCTTGAATTTTTTTTATTTTTTTTTAAAAAAATGAAACACCAAATTATTTTTTTAATTATTATCATCCTCCAATTTTCAACCTTAACACTATCTCAAACACCCCCTTCTGGTCCAACAAACATCACACAAATCCTAGAAAAAGCAGGCCAATTCACAACATTAATTAGACTAATGAAAGTATCACAAGTTAGTGATCAAATCAACACACAATTAAACAATTCAAATCAAGGGAATGGGATGACTATTTTTGCACCAACAGATAATGCATTTTCTAGCCTAAAATCAGGCACAATAAATACACTAAGTGCACAACAACAAGTTCAATTGGTGCAATTTCATGTTTTACCAAATTTCATTTCAATGTCACAATTTCAAACTATTAGTAACCCTTTGAGAACACAAGCTGGTGATTCTACTCCCGGAGACTTCCCGTTAAACGTAACGACGTCCGGTAATCAAGTCAATGTCTCTACCGGAGTTGATGATGCTACTATTGCTAACACAATTTATACTGATGGTCAGCTTGCTGTTTATCAG : GTTGATAAAGTGCTTCAACCTATGAGTATCTTTGCTGCTCCGGCTCCGGCAATGGCACCGACTCCGGCAACGTTGAAACCAAAGAGCAAGTCTCCGGCAGGATTGAACCCTACCTCCGGCAACGACGACTTGCCGGCGGCGGATGATTCCGGTGTTGAGAGGATTGCCATGCACGGCACAACGGTTTTGTTTTTTGGAATTTCTTT</gDNA_template>
            <first_frame> K  N  Y  I  I  S  F  L  N  F  F  Y  F  F  L  K  K  *  N  T  K  L  F  F  *  L  L  S  S  S  N  F  Q  P  *  H  Y  L  K  H  P  L  L  V  Q  Q  T  S  H  K  S  *  K  K  Q  A  N  S  Q  H  *  L  D  *  *  K  Y  H  K  L  V  I  K  S  T  H  N  *  T  I  Q  I  K  G  M  G  *  L  F  L  H  Q  Q  I  M  H  F  L  A  *  N  Q  A  Q  *  I  H  *  V  H  N  N  K  F  N  W  C  N  F  M  F  Y  Q  I  S  F  Q  C  H  N  F  K  L  L  V  T  L  *  E  H  K  L  V  I  L  L  P  E  T  S  R  *  T  *  R  R  P  V  I  K  S  M  S  L  P  E  L  M  M  L  L  L  L  T  Q  F  I  L  M  V  S  L  L  F  I  R :   L  I  K  C  F  N  L  *  V  S  L  L  L  R  L  R  Q  W  H  R  L  R  Q  R  *  N  Q  R  A  S  L  R  Q  D  *  T  L  P  P  A  T  T  T  C  R  R  R  M  I  P  V  L  R  G  L  P  C  T  A  Q  R  F  C  F  L  E  F  L  </first_frame>
            <second_frame>  R  T  T  S  F  P  S  *  I  F  F  I  F  F  *  K  N  E  T  P  N  Y  F  F  N  Y  Y  H  P  P  I  F  N  L  N  T  I  S  N  T  P  F  W  S  N  K  H  H  T  N  P  R  K  S  R  P  I  H  N  I  N  *  T  N  E  S  I  T  S  *  *  S  N  Q  H  T  I  K  Q  F  K  S  R  E  W  D  D  Y  F  C  T  N  R  *  C  I  F  *  P  K  I  R  H  N  K  Y  T  K  C  T  T  T  S  S  I  G  A  I  S  C  F  T  K  F  H  F  N  V  T  I  S  N  Y  *  *  P  F  E  N  T  S  W  *  F  Y  S  R  R  L  P  V  K  R  N  D  V  R  *  S  S  Q  C  L  Y  R  S  *  *  C  Y  Y  C  *  H  N  L  Y  *  W  S  A  C  C  L  S   : G  *  *  S  A  S  T  Y  E  Y  L  C  C  S  G  S  G  N  G  T  D  S  G  N  V  E  T  K  E  Q  V  S  G  R  I  E  P  Y  L  R  Q  R  R  L  A  G  G  G  *  F  R  C  *  E  D  C  H  A  R  H  N  G  F  V  F  W  N  F  F </second_frame>
            <third_frame>   E  L  H  H  F  L  L  E  F  F  L  F  F  F  K  K  M  K  H  Q  I  I  F  L  I  I  I  I  L  Q  F  S  T  L  T  L  S  Q  T  P  P  S  G  P  T  N  I  T  Q  I  L  E  K  A  G  Q  F  T  T  L  I  R  L  M  K  V  S  Q  V  S  D  Q  I  N  T  Q  L  N  N  S  N  Q  G  N  G  M  T  I  F  A  P  T  D  N  A  F  S  S  L  K  S  G  T  I  N  T  L  S  A  Q  Q  Q  V  Q  L  V  Q  F  H  V  L  P  N  F  I  S  M  S  Q  F  Q  T  I  S  N  P  L  R  T  Q  A  G  D  S  T  P  G  D  F  P  L  N  V  T  T  S  G  N  Q  V  N  V  S  T  G  V  D  D  A  T  I  A  N  T  I  Y  T  D  G  Q  L  A  V  Y  Q  :  V  D  K  V  L  Q  P  M  S  I  F  A  A  P  A  P  A  M  A  P  T  P  A  T  L  K  P  K  S  K  S  P  A  G  L  N  P  T  S  G  N  D  D  L  P  A  A  D  D  S  G  V  E  R  I  A  M  H  G  T  T  V  L  F  F  G  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23673" stop="23119"/>
                    <exon start="21989" stop="21786"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELHHFLLEFFLFFFKKMKHQIIFLIIIILQFSTLTLSQTPPSGPTNITQILEKAGQFTTLIRLMKVSQVSDQINTQLNNSNQGNGMTIFAPTDNAFSSLKSGTINTLSAQQQVQLVQFHVLPNFISMSQFQTISNPLRTQAGDSTPGDFPLNVTTSGNQVNVSTGVDDATIANTIYTDGQLAVYQVDKVLQPMSIFAAPAPAMAPTPATLKPKSKSPAGLNPTSGNDDLPAADDSGVERIAMHGTTVLFFGIS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="30509" PGL_stop="27351"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30509" e_stop="30091"/>
            <exon e_start="29993" e_stop="29819"/>
            <exon e_start="28965" e_stop="28879"/>
            <exon e_start="27476" e_stop="27351"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.988" e_score="0.998"/>
          <exon-intron don_prob="0.928" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="1.000" e_score="0.989"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="30509" e_stop="30091" e_length="419"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.988">
            <gDNA_intron_boundary i_start="30090" i_stop="29994" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29993" e_stop="29819" e_length="175"/>
          </exon>
          <intron i_serial="2" don_prob="0.928" acc_prob="0.995">
            <gDNA_intron_boundary i_start="29818" i_stop="28966" i_length="853"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="28965" e_stop="28879" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.926" acc_prob="1.000">
            <gDNA_intron_boundary i_start="28878" i_stop="27477" i_length="1402"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="27476" e_stop="27351" e_length="126"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30509" stop="30091"/>
              <exon start="29993" stop="29819"/>
              <exon start="28965" stop="28879"/>
              <exon start="27476" stop="27351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326839" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCGAGAGATTAGCCTCATCCCCTCCCCTCTTATTAGTATTAGTAGTTTTTTCTGATTTCTACTTAACATAAGCGTGATTAAATTTAAATTCAAGCTAACAAAGTTTACATGAATTGATAAATGCTTTCGAACATGTGCACTTTATACGGACGGAAAATAGTAGTTACTAATCACTAAACTTTGCTAGCTACCTTTACTACGATAGCAATAAAGTTTTTTCGTGTTTCAATTTATTTGACACTCTTATTCCGAACACCTTCACATAAAAAACATCATAATTTACTATAATTTTCTTTAAAAATTGTTCAAAAAAGAAGCCATAGACAAGCTTGGAGTCAAGTTTTTTGTTGGGTAAAAATGATACAATCTGTTTGTGTTCGAGCTTCAGCTCTGCCATTGCCACCCATTGATTCTCACAG : AAATGCCGCAATGGCAAACAGTTTTGCAATTGATGCTCAAAATCTTAGCTATTCAGTTGTCTCAAAACAAGGAAAAATACTTCCAATTCTTAAAGATTGTTCACTACAAGTTCCTTCTGGACAATTCTGGATGCTTTTGGGACCTAATGGTTGTGGAAAATCAACCCTTTTAAAG : ATATTAGCAGGTCTATTGAGTCCAGATGATGGTTTCTTGTATGTGGAGAGGCCAAGGAGCTTTGTGTATCAGAATCCTGATCATCAG : GTCGTGATGCCAACAGTGGAAGCTGATGTCGCTTTTGGTCTTGGTAAATTGAACTTAACACCAAATGAGATTAAGACTAGGGTGGCAAAAGCTTTGGATGCAGTTGGGATGTATGAATATTTGAAA</gDNA_template>
            <first_frame> A  R  D  *  P  H  P  L  P  S  Y  *  Y  *  *  F  F  L  I  S  T  *  H  K  R  D  *  I  *  I  Q  A  N  K  V  Y  M  N  *  *  M  L  S  N  M  C  T  L  Y  G  R  K  I  V  V  T  N  H  *  T  L  L  A  T  F  T  T  I  A  I  K  F  F  R  V  S  I  Y  L  T  L  L  F  R  T  P  S  H  K  K  H  H  N  L  L  *  F  S  L  K  I  V  Q  K  R  S  H  R  Q  A  W  S  Q  V  F  C  W  V  K  M  I  Q  S  V  C  V  R  A  S  A  L  P  L  P  P  I  D  S  H  R :   N  A  A  M  A  N  S  F  A  I  D  A  Q  N  L  S  Y  S  V  V  S  K  Q  G  K  I  L  P  I  L  K  D  C  S  L  Q  V  P  S  G  Q  F  W  M  L  L  G  P  N  G  C  G  K  S  T  L  L  K  :  I  L  A  G  L  L  S  P  D  D  G  F  L  Y  V  E  R  P  R  S  F  V  Y  Q  N  P  D  H  Q  :  V  V  M  P  T  V  E  A  D  V  A  F  G  L  G  K  L  N  L  T  P  N  E  I  K  T  R  V  A  K  A  L  D  A  V  G  M  Y  E  Y  L  K </first_frame>
            <second_frame>  R  E  I  S  L  I  P  S  P  L  I  S  I  S  S  F  F  *  F  L  L  N  I  S  V  I  K  F  K  F  K  L  T  K  F  T  *  I  D  K  C  F  R  T  C  A  L  Y  T  D  G  K  *  *  L  L  I  T  K  L  C  *  L  P  L  L  R  *  Q  *  S  F  F  V  F  Q  F  I  *  H  S  Y  S  E  H  L  H  I  K  N  I  I  I  Y  Y  N  F  L  *  K  L  F  K  K  E  A  I  D  K  L  G  V  K  F  F  V  G  *  K  *  Y  N  L  F  V  F  E  L  Q  L  C  H  C  H  P  L  I  L  T   : E  M  P  Q  W  Q  T  V  L  Q  L  M  L  K  I  L  A  I  Q  L  S  Q  N  K  E  K  Y  F  Q  F  L  K  I  V  H  Y  K  F  L  L  D  N  S  G  C  F  W  D  L  M  V  V  E  N  Q  P  F  *  R :   Y  *  Q  V  Y  *  V  Q  M  M  V  S  C  M  W  R  G  Q  G  A  L  C  I  R  I  L  I  I  R :   S  *  C  Q  Q  W  K  L  M  S  L  L  V  L  V  N  *  T  *  H  Q  M  R  L  R  L  G  W  Q  K  L  W  M  Q  L  G  C  M  N  I  *   </second_frame>
            <third_frame>   E  R  L  A  S  S  P  P  L  L  L  V  L  V  V  F  S  D  F  Y  L  T  *  A  *  L  N  L  N  S  S  *  Q  S  L  H  E  L  I  N  A  F  E  H  V  H  F  I  R  T  E  N  S  S  Y  *  S  L  N  F  A  S  Y  L  Y  Y  D  S  N  K  V  F  S  C  F  N  L  F  D  T  L  I  P  N  T  F  T  *  K  T  S  *  F  T  I  I  F  F  K  N  C  S  K  K  K  P  *  T  S  L  E  S  S  F  L  L  G  K  N  D  T  I  C  L  C  S  S  F  S  S  A  I  A  T  H  *  F  S  Q  :  K  C  R  N  G  K  Q  F  C  N  *  C  S  K  S  *  L  F  S  C  L  K  T  R  K  N  T  S  N  S  *  R  L  F  T  T  S  S  F  W  T  I  L  D  A  F  G  T  *  W  L  W  K  I  N  P  F  K   : D  I  S  R  S  I  E  S  R  *  W  F  L  V  C  G  E  A  K  E  L  C  V  S  E  S  *  S  S   : G  R  D  A  N  S  G  S  *  C  R  F  W  S  W  *  I  E  L  N  T  K  *  D  *  D  *  G  G  K  S  F  G  C  S  W  D  V  *  I  F  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30221" stop="30091"/>
                    <exon start="29993" stop="29819"/>
                    <exon start="28965" stop="28879"/>
                    <exon start="27476" stop="27351"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSLKIVQKRSHRQAWSQVFCWVKMIQSVCVRASALPLPPIDSHRNAAMANSFAIDAQNLSYSVVSKQGKILPILKDCSLQVPSGQFWMLLGPNGCGKSTLLKILAGLLSPDDGFLYVERPRSFVYQNPDHQVVMPTVEADVAFGLGKLNLTPNEIKTRVAKALDAVGMYEYLK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="38018" PGL_stop="41236"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38018" e_stop="38712"/>
            <exon e_start="38789" e_stop="38884"/>
            <exon e_start="39692" e_stop="39804"/>
            <exon e_start="39895" e_stop="39961"/>
            <exon e_start="40043" e_stop="40135"/>
            <exon e_start="40244" e_stop="40393"/>
            <exon e_start="40540" e_stop="40628"/>
            <exon e_start="40738" e_stop="40843"/>
            <exon e_start="40940" e_stop="41027"/>
            <exon e_start="41122" e_stop="41236"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.902"/>
          <exon-intron don_prob="0.906" acc_prob="0.698" e_score="0.990"/>
          <exon-intron don_prob="0.987" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.002" e_score="1.000"/>
          <exon-intron don_prob="0.869" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.738" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.862" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="38018" e_stop="38712" e_length="695"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="38713" i_stop="38788" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="38789" e_stop="38884" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.906" acc_prob="0.698">
            <gDNA_intron_boundary i_start="38885" i_stop="39691" i_length="807"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39692" e_stop="39804" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.924">
            <gDNA_intron_boundary i_start="39805" i_stop="39894" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39895" e_stop="39961" e_length="67"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="39962" i_stop="40042" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40043" e_stop="40135" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.948" acc_prob="0.972">
            <gDNA_intron_boundary i_start="40136" i_stop="40243" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="40244" e_stop="40393" e_length="150"/>
          </exon>
          <intron i_serial="6" don_prob="0.968" acc_prob="0.002">
            <gDNA_intron_boundary i_start="40394" i_stop="40539" i_length="146"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="40540" e_stop="40628" e_length="89"/>
          </exon>
          <intron i_serial="7" don_prob="0.869" acc_prob="0.989">
            <gDNA_intron_boundary i_start="40629" i_stop="40737" i_length="109"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="40738" e_stop="40843" e_length="106"/>
          </exon>
          <intron i_serial="8" don_prob="0.738" acc_prob="0.950">
            <gDNA_intron_boundary i_start="40844" i_stop="40939" i_length="96"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="40940" e_stop="41027" e_length="88"/>
          </exon>
          <intron i_serial="9" don_prob="0.862" acc_prob="0.983">
            <gDNA_intron_boundary i_start="41028" i_stop="41121" i_length="94"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="41122" e_stop="41236" e_length="115"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38018" stop="38671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38668" stop="38712"/>
              <exon start="38789" stop="38884"/>
              <exon start="39692" stop="39804"/>
              <exon start="39895" stop="39961"/>
              <exon start="40043" stop="40135"/>
              <exon start="40244" stop="40393"/>
              <exon start="40540" stop="40628"/>
              <exon start="40738" stop="40843"/>
              <exon start="40940" stop="41027"/>
              <exon start="41122" stop="41236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328864" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTCATAGAAGAATATTATTACTCTGTTTTTATACATTTTCTTATATAATACCCAGAAATGGCTAAAATGTTTGCTTGCTTAGTGTTTTGAGCCGACAATACTAAATACTCTGTATTTATTTTCATTATATAATTCATATGTATTGAAAAAAATTCATCATCATCATCAGTATAAAGCCGTCCAGTACTGCAGAAAAATGATGAACAAAACGACGATGACAACGTCATTAGGATAATTAATTTTAATTTTTTTATTTTTACATTATTAGTTGTCGTGTCGTCTCCGGCTTATGATAACTTCATCTTCATCCTTAACAATTTGTTTCCTTTTTCAGTTTTCATACTTTTAAGCAAACTTCTAAAAGCTGCAAAAGCAAAAAAAAAAAAACTCAAAAAGCTCTGTTTCTAACAGAGTATTACTCTGTACATTGTTTTGGGTATAAATAATTTTGGGTTTTTTTTTTTTTTGTATTAGTTGATCGGAAAATTGAAGATTTTTGGCCGGAAAATGGAAAGAAGAAGTGGGTATTGTTTATCAGTTATAATGTTAGTGTTTGGAGTGGTTTTCTTGCATTGTTTGGTGATGACGTCATTTGCCGCTAATGTGACGTATGATCACCGGGCATTGGTTGTTGACGGAAGGAGAAGAGTTTTGATCTCCGGTTCAATACATTATCCTCGGAGTACTCCTGAT : ATGTGGCCAGACCTTATACAGAAATCAAAAGATGGAGGATTGGATGTTATAGAGACTTATGTTTTCTGGAACCTTCATGAACCTGTTCGAAATCAG : TATGATTTTGAAGGAAGGAAAGATTTGATTAATTTTGTGAAGTTGGTGGAGAAAGCTGGCTTATTTGTTCATATAAGGATTGGGCCTTATGTTTGTGCAGAATGGAACTATGG : TGGGTTTCCTCTTTGGTTGCATTTCATTCCTGGAATTGAATTTCGAACCGACAATGAACCGTTCAAG : GCAGAAATGAAGCGATTCACAGCTAAAATTGTTGACATGATCAAGCAAGAAAATCTATATGCATCCCAGGGTGGGCCGGTTATCTTGTCTCAG : ATAGAAAATGAGTATGGCAATGGTGATATTGAGTCTCGTTATGGTCCTCGTGCCAAACCTTACGTGAACTGGGCAGCATCAATGGCTACGTCTTTAAATACGGGAGTGCCATGGGTTATGTGTCAGCAACCAGATGCCCCTCCTTCCGTT : ATTAACACTTGCAATGGATTTTATTGTGACCAATTCAAGCAAAATTCCGATAAAACACCCAAGATGTGGACTGAGAATTGGACCGGATG : GTTTCTGTCGTTTGGTGGTCCTGTCCCTTACAGACCAGTGGAAGACATCGCTTTCGCTGTGGCTCGATTTTTCCAGCGAGGCGGAACTTTCCAGAACTATTACATG : TACCACGGGGGAACTAACTTTGGGAGAACCAGTGGTGGACCGTTTATTGCAACTAGCTATGACTATGATGCTCCTTTAGATGAGTACG : GGCTTATAAATCAACCAAAATGGGGTCACTTGAAAGATCTCCATAAAGCCATAAAGCTTTGTGAGGCTGCAATGGTGGCAACAGAACCAAACATCACTTCTCTGGGCTCTAATAT</gDNA_template>
            <first_frame> I  S  *  K  N  I  I  T  L  F  L  Y  I  F  L  Y  N  T  Q  K  W  L  K  C  L  L  A  *  C  F  E  P  T  I  L  N  T  L  Y  L  F  S  L  Y  N  S  Y  V  L  K  K  I  H  H  H  H  Q  Y  K  A  V  Q  Y  C  R  K  M  M  N  K  T  T  M  T  T  S  L  G  *  L  I  L  I  F  L  F  L  H  Y  *  L  S  C  R  L  R  L  M  I  T  S  S  S  S  L  T  I  C  F  L  F  Q  F  S  Y  F  *  A  N  F  *  K  L  Q  K  Q  K  K  K  N  S  K  S  S  V  S  N  R  V  L  L  C  T  L  F  W  V  *  I  I  L  G  F  F  F  F  C  I  S  *  S  E  N  *  R  F  L  A  G  K  W  K  E  E  V  G  I  V  Y  Q  L  *  C  *  C  L  E  W  F  S  C  I  V  W  *  *  R  H  L  P  L  M  *  R  M  I  T  G  H  W  L  L  T  E  G  E  E  F  *  S  P  V  Q  Y  I  I  L  G  V  L  L  I :   C  G  Q  T  L  Y  R  N  Q  K  M  E  D  W  M  L  *  R  L  M  F  S  G  T  F  M  N  L  F  E  I  S :   M  I  L  K  E  G  K  I  *  L  I  L  *  S  W  W  R  K  L  A  Y  L  F  I  *  G  L  G  L  M  F  V  Q  N  G  T  M   : V  G  F  L  F  G  C  I  S  F  L  E  L  N  F  E  P  T  M  N  R  S  R :   Q  K  *  S  D  S  Q  L  K  L  L  T  *  S  S  K  K  I  Y  M  H  P  R  V  G  R  L  S  C  L  R :   *  K  M  S  M  A  M  V  I  L  S  L  V  M  V  L  V  P  N  L  T  *  T  G  Q  H  Q  W  L  R  L  *  I  R  E  C  H  G  L  C  V  S  N  Q  M  P  L  L  P  L :   L  T  L  A  M  D  F  I  V  T  N  S  S  K  I  P  I  K  H  P  R  C  G  L  R  I  G  P  D   : G  F  C  R  L  V  V  L  S  L  T  D  Q  W  K  T  S  L  S  L  W  L  D  F  S  S  E  A  E  L  S  R  T  I  T  C :   T  T  G  E  L  T  L  G  E  P  V  V  D  R  L  L  Q  L  A  M  T  M  M  L  L  *  M  S  T  :  G  L  *  I  N  Q  N  G  V  T  *  K  I  S  I  K  P  *  S  F  V  R  L  Q  W  W  Q  Q  N  Q  T  S  L  L  W  A  L  I  </first_frame>
            <second_frame>  F  H  R  R  I  L  L  L  C  F  Y  T  F  S  Y  I  I  P  R  N  G  *  N  V  C  L  L  S  V  L  S  R  Q  Y  *  I  L  C  I  Y  F  H  Y  I  I  H  M  Y  *  K  K  F  I  I  I  I  S  I  K  P  S  S  T  A  E  K  *  *  T  K  R  R  *  Q  R  H  *  D  N  *  F  *  F  F  Y  F  Y  I  I  S  C  R  V  V  S  G  L  *  *  L  H  L  H  P  *  Q  F  V  S  F  F  S  F  H  T  F  K  Q  T  S  K  S  C  K  S  K  K  K  K  T  Q  K  A  L  F  L  T  E  Y  Y  S  V  H  C  F  G  Y  K  *  F  W  V  F  F  F  F  V  L  V  D  R  K  I  E  D  F  W  P  E  N  G  K  K  K  W  V  L  F  I  S  Y  N  V  S  V  W  S  G  F  L  A  L  F  G  D  D  V  I  C  R  *  C  D  V  *  S  P  G  I  G  C  *  R  K  E  K  S  F  D  L  R  F  N  T  L  S  S  E  Y  S  *   : Y  V  A  R  P  Y  T  E  I  K  R  W  R  I  G  C  Y  R  D  L  C  F  L  E  P  S  *  T  C  S  K  S   : V  *  F  *  R  K  E  R  F  D  *  F  C  E  V  G  G  E  S  W  L  I  C  S  Y  K  D  W  A  L  C  L  C  R  M  E  L  W  :  W  V  S  S  L  V  A  F  H  S  W  N  *  I  S  N  R  Q  *  T  V  Q   : G  R  N  E  A  I  H  S  *  N  C  *  H  D  Q  A  R  K  S  I  C  I  P  G  W  A  G  Y  L  V  S   : D  R  K  *  V  W  Q  W  *  Y  *  V  S  L  W  S  S  C  Q  T  L  R  E  L  G  S  I  N  G  Y  V  F  K  Y  G  S  A  M  G  Y  V  S  A  T  R  C  P  S  F  R   : Y  *  H  L  Q  W  I  L  L  *  P  I  Q  A  K  F  R  *  N  T  Q  D  V  D  *  E  L  D  R  M  :  V  S  V  V  W  W  S  C  P  L  Q  T  S  G  R  H  R  F  R  C  G  S  I  F  P  A  R  R  N  F  P  E  L  L  H   : V  P  R  G  N  *  L  W  E  N  Q  W  W  T  V  Y  C  N  *  L  *  L  *  C  S  F  R  *  V  R :   A  Y  K  S  T  K  M  G  S  L  E  R  S  P  *  S  H  K  A  L  *  G  C  N  G  G  N  R  T  K  H  H  F  S  G  L  *  Y </second_frame>
            <third_frame>   F  I  E  E  Y  Y  Y  S  V  F  I  H  F  L  I  *  Y  P  E  M  A  K  M  F  A  C  L  V  F  *  A  D  N  T  K  Y  S  V  F  I  F  I  I  *  F  I  C  I  E  K  N  S  S  S  S  S  V  *  S  R  P  V  L  Q  K  N  D  E  Q  N  D  D  D  N  V  I  R  I  I  N  F  N  F  F  I  F  T  L  L  V  V  V  S  S  P  A  Y  D  N  F  I  F  I  L  N  N  L  F  P  F  S  V  F  I  L  L  S  K  L  L  K  A  A  K  A  K  K  K  K  L  K  K  L  C  F  *  Q  S  I  T  L  Y  I  V  L  G  I  N  N  F  G  F  F  F  F  L  Y  *  L  I  G  K  L  K  I  F  G  R  K  M  E  R  R  S  G  Y  C  L  S  V  I  M  L  V  F  G  V  V  F  L  H  C  L  V  M  T  S  F  A  A  N  V  T  Y  D  H  R  A  L  V  V  D  G  R  R  R  V  L  I  S  G  S  I  H  Y  P  R  S  T  P  D  :  M  W  P  D  L  I  Q  K  S  K  D  G  G  L  D  V  I  E  T  Y  V  F  W  N  L  H  E  P  V  R  N  Q  :  Y  D  F  E  G  R  K  D  L  I  N  F  V  K  L  V  E  K  A  G  L  F  V  H  I  R  I  G  P  Y  V  C  A  E  W  N  Y  G :   G  F  P  L  W  L  H  F  I  P  G  I  E  F  R  T  D  N  E  P  F  K  :  A  E  M  K  R  F  T  A  K  I  V  D  M  I  K  Q  E  N  L  Y  A  S  Q  G  G  P  V  I  L  S  Q  :  I  E  N  E  Y  G  N  G  D  I  E  S  R  Y  G  P  R  A  K  P  Y  V  N  W  A  A  S  M  A  T  S  L  N  T  G  V  P  W  V  M  C  Q  Q  P  D  A  P  P  S  V  :  I  N  T  C  N  G  F  Y  C  D  Q  F  K  Q  N  S  D  K  T  P  K  M  W  T  E  N  W  T  G  W :   F  L  S  F  G  G  P  V  P  Y  R  P  V  E  D  I  A  F  A  V  A  R  F  F  Q  R  G  G  T  F  Q  N  Y  Y  M  :  Y  H  G  G  T  N  F  G  R  T  S  G  G  P  F  I  A  T  S  Y  D  Y  D  A  P  L  D  E  Y   : G  L  I  N  Q  P  K  W  G  H  L  K  D  L  H  K  A  I  K  L  C  E  A  A  M  V  A  T  E  P  N  I  T  S  L  G  S  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38494" stop="38712"/>
                    <exon start="38789" stop="38884"/>
                    <exon start="39692" stop="39804"/>
                    <exon start="39895" stop="39961"/>
                    <exon start="40043" stop="40135"/>
                    <exon start="40244" stop="40393"/>
                    <exon start="40540" stop="40628"/>
                    <exon start="40738" stop="40843"/>
                    <exon start="40940" stop="41027"/>
                    <exon start="41122" stop="41234"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1134</number_coding_nucleotides>
                  <number_encoded_amino_acids>378</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIGKLKIFGRKMERRSGYCLSVIMLVFGVVFLHCLVMTSFAANVTYDHRALVVDGRRRVLISGSIHYPRSTPDMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYDFEGRKDLINFVKLVEKAGLFVHIRIGPYVCAEWNYGGFPLWLHFIPGIEFRTDNEPFKAEMKRFTAKIVDMIKQENLYASQGGPVILSQIENEYGNGDIESRYGPRAKPYVNWAASMATSLNTGVPWVMCQQPDAPPSVINTCNGFYCDQFKQNSDKTPKMWTENWTGWFLSFGGPVPYRPVEDIAFAVARFFQRGGTFQNYYMYHGGTNFGRTSGGPFIATSYDYDAPLDEYGLINQPKWGHLKDLHKAIKLCEAAMVATEPNITSLGSN</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38194" stop="38427"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRPVLQKNDEQNDDDNVIRIINFNFFIFTLLVVVSSPAYDNFIFILNNLFPFSVFILLSKLLKAAKAKKKKLKKLCF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="41707" PGL_stop="48907"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41707" e_stop="41868"/>
            <exon e_start="41955" e_stop="42151"/>
            <exon e_start="42311" e_stop="42420"/>
            <exon e_start="42698" e_stop="42807"/>
            <exon e_start="42972" e_stop="43085"/>
            <exon e_start="43238" e_stop="43339"/>
            <exon e_start="43949" e_stop="44160"/>
            <exon e_start="44279" e_stop="44615"/>
            <exon e_start="44952" e_stop="45252"/>
            <exon e_start="47885" e_stop="47921"/>
            <exon e_start="48890" e_stop="48907"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.815" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.880" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.762" acc_prob="0.739" e_score="0.622"/>
          <exon-only e_score="0.778"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41707" e_stop="41868" e_length="162"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.978">
            <gDNA_intron_boundary i_start="41869" i_stop="41954" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41955" e_stop="42151" e_length="197"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.975">
            <gDNA_intron_boundary i_start="42152" i_stop="42310" i_length="159"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42311" e_stop="42420" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="0.959" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42421" i_stop="42697" i_length="277"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42698" e_stop="42807" e_length="110"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.953">
            <gDNA_intron_boundary i_start="42808" i_stop="42971" i_length="164"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="42972" e_stop="43085" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.815" acc_prob="0.981">
            <gDNA_intron_boundary i_start="43086" i_stop="43237" i_length="152"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="43238" e_stop="43339" e_length="102"/>
          </exon>
          <intron i_serial="6" don_prob="0.956" acc_prob="0.974">
            <gDNA_intron_boundary i_start="43340" i_stop="43948" i_length="609"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="43949" e_stop="44160" e_length="212"/>
          </exon>
          <intron i_serial="7" don_prob="0.880" acc_prob="0.961">
            <gDNA_intron_boundary i_start="44161" i_stop="44278" i_length="118"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="44279" e_stop="44615" e_length="337"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="0.991">
            <gDNA_intron_boundary i_start="44616" i_stop="44951" i_length="336"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="44952" e_stop="45252" e_length="301"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45253" i_stop="47884" i_length="2632"/>
          </intron>
          <exon e_serial="10" e_score="0.622">
            <gDNA_exon_boundary e_start="47885" e_stop="47921" e_length="37"/>
          </exon>
          <intron i_serial="10" don_prob="0.762" acc_prob="0.739">
            <gDNA_intron_boundary i_start="47922" i_stop="48889" i_length="968"/>
          </intron>
          <exon e_serial="11" e_score="0.778">
            <gDNA_exon_boundary e_start="48890" e_stop="48907" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41707" stop="41868"/>
              <exon start="41955" stop="42151"/>
              <exon start="42311" stop="42420"/>
              <exon start="42698" stop="42807"/>
              <exon start="42972" stop="43085"/>
              <exon start="43238" stop="43339"/>
              <exon start="43949" stop="44160"/>
              <exon start="44279" stop="44615"/>
              <exon start="44952" stop="45252"/>
              <exon start="47885" stop="47921"/>
              <exon start="48890" stop="48907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319056" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCAGTGTTTATAAAACTGATTCACAGTGTGCTGCATTTCTCGCCAATACTGCTACGCAATCTGATGCGGCTGTGAGCTTCAATGGAAACTCATATCATTTACCTCCATGGTCCGTCAGCATTTTACCTGACTGCAAGAATGTTGCTTTTAGTACTGCAAAG : ATTAATTCTGCATCAACCATCTCAACATTTGTTACTCGGTCTTCGGAAGCTGATGCATCTGGTGGATCCCTATCAGGTTGGACTTCGGTGAATGAGCCTGTAGGCATCTCAAATGAAAATGCATTCACGAGAATGGGGTTGTTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAG : TGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGTTCTTCATGCTTATATTAATGGAAAGCTATCAG : GAAGTGGAAAAGGCAACAGTAGACATTCTAACTTTACAATTGAAGTTCCAGTCACACTTGTGCCTGGAGAAAACAAAATTGACCTGTTGAGTGCGACTGTGGGACTTCAG : AACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATATCAG : GTTGGATTGAAAGGAGAAGATTTGGGCTTATCTAATGGAGGTTCTACACTTTGGAAGTCACAAACTGCATTGCCTACAAACCAACCATTAATATGGTATAAG : GCAAGTTTTGATGCTCCTGCTGGTGATACCCCTCTTTCGATGGATTTTACTGGAATGGGGAAGGGTGAGGCATGGGTGAATGGGCAAAGCATCGGTCGATTTTGGCCTGCCTATATTGCACCGAATGACGGTTGTACTGACCCCTGCAATTATAGAGGAGGATACAATGCTGAAAAATGTCTCAAAAATTGTGGAAAACCATCCCAGCTGCT : ATACCACGTTCCTCGTTCATGGCTGAAATCCAGTGGAAATGTCTTGGTGTTGTTTGAGGAAATGGGCGGGGATCCTACGAAGCTGTCTTTTGCAACAAGAGAGATACAAAGTGTATGCTCAAGAATATCTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAG : GCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTACTAAGTTACAGCTTCAGAAAGATAGTGCTTAGCTACATATACATCATGGAGAGGAAGACCACTTTGGCTTCCCTCACCGATTTGATGAAATTATAATAAAAGAAAACTAGCTTCAATA : AAGAAAAAATTCAACTAAAAGAAAATTAACAATTACG : GAAAAAAAAAAACTTAAA</gDNA_template>
            <first_frame> V  S  V  Y  K  T  D  S  Q  C  A  A  F  L  A  N  T  A  T  Q  S  D  A  A  V  S  F  N  G  N  S  Y  H  L  P  P  W  S  V  S  I  L  P  D  C  K  N  V  A  F  S  T  A  K  :  I  N  S  A  S  T  I  S  T  F  V  T  R  S  S  E  A  D  A  S  G  G  S  L  S  G  W  T  S  V  N  E  P  V  G  I  S  N  E  N  A  F  T  R  M  G  L  L  E  Q  I  N  T  T  A  D  K  S  D  Y  L  W  Y  S  L  S :   V  N  I  K  N  D  E  P  F  L  Q  D  G  S  A  T  V  L  H  V  K  T  L  G  H  V  L  H  A  Y  I  N  G  K  L  S   : G  S  G  K  G  N  S  R  H  S  N  F  T  I  E  V  P  V  T  L  V  P  G  E  N  K  I  D  L  L  S  A  T  V  G  L  Q  :  N  Y  G  A  F  F  D  L  K  G  A  G  I  T  G  P  V  Q  L  K  G  F  K  N  G  S  T  T  D  L  S  S  K  Q  W  T  Y  Q  :  V  G  L  K  G  E  D  L  G  L  S  N  G  G  S  T  L  W  K  S  Q  T  A  L  P  T  N  Q  P  L  I  W  Y  K  :  A  S  F  D  A  P  A  G  D  T  P  L  S  M  D  F  T  G  M  G  K  G  E  A  W  V  N  G  Q  S  I  G  R  F  W  P  A  Y  I  A  P  N  D  G  C  T  D  P  C  N  Y  R  G  G  Y  N  A  E  K  C  L  K  N  C  G  K  P  S  Q  L  L :   Y  H  V  P  R  S  W  L  K  S  S  G  N  V  L  V  L  F  E  E  M  G  G  D  P  T  K  L  S  F  A  T  R  E  I  Q  S  V  C  S  R  I  S  D  A  H  P  L  P  I  D  M  W  A  S  E  D  D  A  R  K  K  S  G  P  T  L  S  L  E  C  P  H  P  N  Q  V  I  S  S  I  K  F  A  S  F  G  T  P  Q  G  T  C  G  S  F  I  H  G  R  C  S  S  S  N  A  L  S  I  V  K  K  :  A  C  I  G  S  K  S  C  S  L  G  V  S  I  N  A  F  G  D  P  C  K  G  V  A  K  S  L  A  V  E  A  S  C  T  *  C  L  T  K  L  M  N  R  E  G  T  F  L  K  C  *  S  S  I  R  S  D  K  P  L  L  S  Y  S  F  R  K  I  V  L  S  Y  I  Y  I  M  E  R  K  T  T  L  A  S  L  T  D  L  M  K  L  *  *  K  K  T  S  F  N   : K  E  K  I  Q  L  K  E  N  *  Q  L  R :   K  K  K  N  L   </first_frame>
            <second_frame>  S  V  F  I  K  L  I  H  S  V  L  H  F  S  P  I  L  L  R  N  L  M  R  L  *  A  S  M  E  T  H  I  I  Y  L  H  G  P  S  A  F  Y  L  T  A  R  M  L  L  L  V  L  Q  R :   L  I  L  H  Q  P  S  Q  H  L  L  L  G  L  R  K  L  M  H  L  V  D  P  Y  Q  V  G  L  R  *  M  S  L  *  A  S  Q  M  K  M  H  S  R  E  W  G  C  W  N  R  *  I  L  Q  L  I  K  A  I  I  S  G  T  P  *   : V  S  I  *  K  M  M  S  L  S  F  K  M  D  L  Q  R  Y  F  M  *  K  H  L  A  M  F  F  M  L  I  L  M  E  S  Y  Q  :  E  V  E  K  A  T  V  D  I  L  T  L  Q  L  K  F  Q  S  H  L  C  L  E  K  T  K  L  T  C  *  V  R  L  W  D  F  R :   T  M  E  H  S  L  I  S  R  E  Q  G  L  R  V  Q  C  N  *  K  V  S  K  M  A  L  L  L  I  F  H  Q  S  S  G  H  I  R :   L  D  *  K  E  K  I  W  A  Y  L  M  E  V  L  H  F  G  S  H  K  L  H  C  L  Q  T  N  H  *  Y  G  I  R :   Q  V  L  M  L  L  L  V  I  P  L  F  R  W  I  L  L  E  W  G  R  V  R  H  G  *  M  G  K  A  S  V  D  F  G  L  P  I  L  H  R  M  T  V  V  L  T  P  A  I  I  E  E  D  T  M  L  K  N  V  S  K  I  V  E  N  H  P  S  C   : Y  T  T  F  L  V  H  G  *  N  P  V  E  M  S  W  C  C  L  R  K  W  A  G  I  L  R  S  C  L  L  Q  Q  E  R  Y  K  V  Y  A  Q  E  Y  L  M  L  I  H  F  L  L  I  C  G  L  R  K  T  M  H  E  K  S  Q  G  Q  L  Y  L  L  S  A  L  I  L  I  K  S  S  H  Q  S  N  L  Q  A  L  A  L  L  K  E  H  A  G  A  L  S  M  V  D  A  V  A  A  M  L  F  Q  L  *  R  R :   L  A  L  D  Q  K  A  V  V  L  E  F  Q  *  M  H  L  V  I  H  V  K  E  S  Q  K  V  *  L  *  K  L  L  V  H  D  A  S  R  N  *  *  T  E  K  A  R  S  L  S  V  K  V  V  *  G  Q  I  N  H  Y  *  V  T  A  S  E  R  *  C  L  A  T  Y  T  S  W  R  G  R  P  L  W  L  P  S  P  I  *  *  N  Y  N  K  R  K  L  A  S  I  :  K  K  K  F  N  *  K  K  I  N  N  Y   : G  K  K  K  T  *  </second_frame>
            <third_frame>   Q  C  L  *  N  *  F  T  V  C  C  I  S  R  Q  Y  C  Y  A  I  *  C  G  C  E  L  Q  W  K  L  I  S  F  T  S  M  V  R  Q  H  F  T  *  L  Q  E  C  C  F  *  Y  C  K   : D  *  F  C  I  N  H  L  N  I  C  Y  S  V  F  G  S  *  C  I  W  W  I  P  I  R  L  D  F  G  E  *  A  C  R  H  L  K  *  K  C  I  H  E  N  G  V  V  G  T  D  K  Y  Y  S  *  *  K  R  L  S  L  V  L  P  E  :  C  Q  Y  K  K  *  *  A  F  P  S  R  W  I  C  N  G  T  S  C  E  N  T  W  P  C  S  S  C  L  Y  *  W  K  A  I  R :   K  W  K  R  Q  Q  *  T  F  *  L  Y  N  *  S  S  S  H  T  C  A  W  R  K  Q  N  *  P  V  E  C  D  C  G  T  S   : E  L  W  S  I  L  *  S  Q  G  S  R  D  Y  G  S  S  A  I  E  R  F  Q  K  W  L  Y  Y  *  S  F  I  K  A  V  D  I  S   : G  W  I  E  R  R  R  F  G  L  I  *  W  R  F  Y  T  L  E  V  T  N  C  I  A  Y  K  P  T  I  N  M  V  *   : G  K  F  *  C  S  C  W  *  Y  P  S  F  D  G  F  Y  W  N  G  E  G  *  G  M  G  E  W  A  K  H  R  S  I  L  A  C  L  Y  C  T  E  *  R  L  Y  *  P  L  Q  L  *  R  R  I  Q  C  *  K  M  S  Q  K  L  W  K  T  I  P  A  A  :  I  P  R  S  S  F  M  A  E  I  Q  W  K  C  L  G  V  V  *  G  N  G  R  G  S  Y  E  A  V  F  C  N  K  R  D  T  K  C  M  L  K  N  I  *  C  S  S  T  S  Y  *  Y  V  G  F  G  R  R  C  T  K  K  V  R  A  N  S  I  S  *  V  P  S  S  *  S  S  H  L  I  N  Q  I  C  K  L  W  H  S  S  R  N  M  R  E  L  Y  P  W  S  M  Q  *  Q  Q  C  S  F  N  C  K  E   : G  L  H  W  I  K  K  L  *  S  W  S  F  N  K  C  I  W  *  S  M  *  R  S  R  K  K  F  S  C  R  S  F  L  Y  M  M  P  H  E  T  N  E  P  R  R  H  V  P  *  V  L  K  *  Y  K  V  R  *  T  I  T  K  L  Q  L  Q  K  D  S  A  *  L  H  I  H  H  G  E  E  D  H  F  G  F  P  H  R  F  D  E  I  I  I  K  E  N  *  L  Q  * :   R  K  N  S  T  K  R  K  L  T  I  T  :  E  K  K  K  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41707" stop="41868"/>
                    <exon start="41955" stop="42151"/>
                    <exon start="42311" stop="42420"/>
                    <exon start="42698" stop="42807"/>
                    <exon start="42972" stop="43085"/>
                    <exon start="43238" stop="43339"/>
                    <exon start="43949" stop="44160"/>
                    <exon start="44279" stop="44615"/>
                    <exon start="44952" stop="45059"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1449</number_coding_nucleotides>
                  <number_encoded_amino_acids>483</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSVYKTDSQCAAFLANTATQSDAAVSFNGNSYHLPPWSVSILPDCKNVAFSTAKINSASTISTFVTRSSEADASGGSLSGWTSVNEPVGISNENAFTRMGLLEQINTTADKSDYLWYSLSVNIKNDEPFLQDGSATVLHVKTLGHVLHAYINGKLSGSGKGNSRHSNFTIEVPVTLVPGENKIDLLSATVGLQNYGAFFDLKGAGITGPVQLKGFKNGSTTDLSSKQWTYQVGLKGEDLGLSNGGSTLWKSQTALPTNQPLIWYKASFDAPAGDTPLSMDFTGMGKGEAWVNGQSIGRFWPAYIAPNDGCTDPCNYRGGYNAEKCLKNCGKPSQLLYHVPRSWLKSSGNVLVLFEEMGGDPTKLSFATREIQSVCSRISDAHPLPIDMWASEDDARKKSGPTLSLECPHPNQVISSIKFASFGTPQGTCGSFIHGRCSSSNALSIVKKACIGSKSCSLGVSINAFGDPCKGVAKSLAVEASCT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="56366" PGL_stop="50372"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56366" e_stop="56098"/>
            <exon e_start="56015" e_stop="55888"/>
            <exon e_start="54647" e_stop="54560"/>
            <exon e_start="52503" e_stop="52430"/>
            <exon e_start="51966" e_stop="51775"/>
            <exon e_start="51102" e_stop="51005"/>
            <exon e_start="50729" e_stop="50372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.996"/>
          <exon-intron don_prob="0.948" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="56366" e_stop="56098" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="56097" i_stop="56016" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56015" e_stop="55888" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.997">
            <gDNA_intron_boundary i_start="55887" i_stop="54648" i_length="1240"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54647" e_stop="54560" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.954">
            <gDNA_intron_boundary i_start="54559" i_stop="52504" i_length="2056"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52503" e_stop="52430" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.922" acc_prob="0.995">
            <gDNA_intron_boundary i_start="52429" i_stop="51967" i_length="463"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="51966" e_stop="51775" e_length="192"/>
          </exon>
          <intron i_serial="5" don_prob="0.978" acc_prob="0.992">
            <gDNA_intron_boundary i_start="51774" i_stop="51103" i_length="672"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="51102" e_stop="51005" e_length="98"/>
          </exon>
          <intron i_serial="6" don_prob="0.905" acc_prob="0.982">
            <gDNA_intron_boundary i_start="51004" i_stop="50730" i_length="275"/>
          </intron>
          <exon e_serial="7" e_score="0.978">
            <gDNA_exon_boundary e_start="50729" e_stop="50372" e_length="358"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56366" stop="56098"/>
              <exon start="56015" stop="55888"/>
              <exon start="54647" stop="54560"/>
              <exon start="52503" stop="52430"/>
              <exon start="51966" stop="51775"/>
              <exon start="51102" stop="51005"/>
              <exon start="50729" stop="50372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321594" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCCTTTTTTTTTCGATTTTCAAGGAAGTGTGACGCAGGTGGCCGCCTCTTAGCCGCCAACAGATATTATCAGTGAAGCAAAAGCAAAACACTCACCAAATTCACCCTTTTTTCTATACCCTTAAACTCCTTAGCCGCAATTGCTGTTTCAAGATTGTGTTTTTTTTAGTACCCTTTTGTTAATTTTCATTGTTTCTTGATTTTGCAACTTGAAAAATGGTTGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATTGCAG : TTTTGAAAAGATTGGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCAGTTGCTGAATGTTAGCTCCCTAATCATCCCTGGTGGGGAGAGCACCACCATGGCCAAGTTGGCTGAGCTCCACAATTTG : TTCCCTGCTTTGCGTGAGTTTGTTCAAATGGGGAAGCCAGTATGGGGGACATGTGCAGGTCTCATTTTCTTGGCAAATAAGGCCACTG : GGCAGAAAACCGGAGGACAGAAACTAATTGGAGGCCTTGATTGTACTGTACACCGTAACTTTTTTGGAAGCCAG : ATTCAAAGCTTTGAGACAGAACTTCCTATTCCTCAAGTCGTAGCTGAAGATGGTGGTCCTCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGTCAGACATTCCTCTATCAGCCATAGAAACTCTTAATTCCAATCCTGCTATTCAAAAGGAAGAG : GAATCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATG : GCACAGTTATTTCTTGAAGATGGTGCCTGAAATCGAAGGAGGAACTTCTGATATTGTGTCAACATCCACCTCAAATCAAAGCTTCGGAACGCGTTCAATTATTGATTTTCCCATATACCAGTAGCAGAAAAAAAAATTGCTTCAAAGAAATGCAGATCATGTTAAAAGGTCAAATGGCTACTCATTGACATTGTTATGTTTTTATTTTTGTTAATTTTCATTTGCTTATCATACATTCTAAATGGTGTTCATGCTAAGACATGAAATGTTGAATGCCATTCATTGTTGTACATAATATTAAAGGATTTTCTCTCACACTCCTCATCCACAAATACAATAATAATTACGTCTCATTCCC</gDNA_template>
            <first_frame> D  P  F  F  F  D  F  Q  G  S  V  T  Q  V  A  A  S  *  P  P  T  D  I  I  S  E  A  K  A  K  H  S  P  N  S  P  F  F  L  Y  P  *  T  P  *  P  Q  L  L  F  Q  D  C  V  F  F  S  T  L  L  L  I  F  I  V  S  *  F  C  N  L  K  N  G  C  G  C  S  C  F  T  G  I  F  Q  *  T  H  C  S :   F  E  K  I  G  S  E  R  C  G  G  E  K  A  R  A  V  A  E  C  *  L  P  N  H  P  W  W  G  E  H  H  H  G  Q  V  G  *  A  P  Q  F   : V  P  C  F  A  *  V  C  S  N  G  E  A  S  M  G  D  M  C  R  S  H  F  L  G  K  *  G  H  W :   A  E  N  R  R  T  E  T  N  W  R  P  *  L  Y  C  T  P  *  L  F  W  K  P   : D  S  K  L  *  D  R  T  S  Y  S  S  S  R  S  *  R  W  W  S  S  K  F  S  C  C  F  H  P  C  S  G  N  P  *  C  R  T  R  R  *  S  I  V  R  H  S  S  I  S  H  R  N  S  *  F  Q  S  C  Y  S  K  G  R   : G  I  Y  R  V  W  K  E  S  N  C  C  C  K  A  R  E  L  T  S  Y  C  F  S  S  R  I  N  C  R  Y  S  M  :  A  Q  L  F  L  E  D  G  A  *  N  R  R  R  N  F  *  Y  C  V  N  I  H  L  K  S  K  L  R  N  A  F  N  Y  *  F  S  H  I  P  V  A  E  K  K  I  A  S  K  K  C  R  S  C  *  K  V  K  W  L  L  I  D  I  V  M  F  L  F  L  L  I  F  I  C  L  S  Y  I  L  N  G  V  H  A  K  T  *  N  V  E  C  H  S  L  L  Y  I  I  L  K  D  F  L  S  H  S  S  S  T  N  T  I  I  I  T  S  H  S  </first_frame>
            <second_frame>  I  L  F  F  S  I  F  K  E  V  *  R  R  W  P  P  L  S  R  Q  Q  I  L  S  V  K  Q  K  Q  N  T  H  Q  I  H  P  F  F  Y  T  L  K  L  L  S  R  N  C  C  F  K  I  V  F  F  L  V  P  F  C  *  F  S  L  F  L  D  F  A  T  *  K  M  V  V  G  V  L  A  L  Q  G  S  F  N  E  H  I  A   : V  L  K  R  L  G  V  K  G  V  E  V  R  K  P  E  Q  L  L  N  V  S  S  L  I  I  P  G  G  E  S  T  T  M  A  K  L  A  E  L  H  N  L  :  F  P  A  L  R  E  F  V  Q  M  G  K  P  V  W  G  T  C  A  G  L  I  F  L  A  N  K  A  T   : G  Q  K  T  G  G  Q  K  L  I  G  G  L  D  C  T  V  H  R  N  F  F  G  S  Q  :  I  Q  S  F  E  T  E  L  P  I  P  Q  V  V  A  E  D  G  G  P  P  S  F  R  A  V  F  I  R  A  P  A  I  L  D  V  G  P  D  V  E  V  L  S  D  I  P  L  S  A  I  E  T  L  N  S  N  P  A  I  Q  K  E  E  :  E  S  T  E  S  G  K  K  V  I  V  A  V  K  Q  G  N  L  L  A  T  A  F  H  P  E  L  T  A  D  T  R  W :   H  S  Y  F  L  K  M  V  P  E  I  E  G  G  T  S  D  I  V  S  T  S  T  S  N  Q  S  F  G  T  R  S  I  I  D  F  P  I  Y  Q  *  Q  K  K  K  L  L  Q  R  N  A  D  H  V  K  R  S  N  G  Y  S  L  T  L  L  C  F  Y  F  C  *  F  S  F  A  Y  H  T  F  *  M  V  F  M  L  R  H  E  M  L  N  A  I  H  C  C  T  *  Y  *  R  I  F  S  H  T  P  H  P  Q  I  Q  *  *  L  R  L  I  P </second_frame>
            <third_frame>   S  F  F  F  R  F  S  R  K  C  D  A  G  G  R  L  L  A  A  N  R  Y  Y  Q  *  S  K  S  K  T  L  T  K  F  T  L  F  S  I  P  L  N  S  L  A  A  I  A  V  S  R  L  C  F  F  *  Y  P  F  V  N  F  H  C  F  L  I  L  Q  L  E  K  W  L  W  V  F  L  L  Y  R  D  L  S  M  N  T  L  Q  :  F  *  K  D  W  E  *  K  V  W  R  *  E  S  Q  S  S  C  *  M  L  A  P  *  S  S  L  V  G  R  A  P  P  W  P  S  W  L  S  S  T  I  C :   S  L  L  C  V  S  L  F  K  W  G  S  Q  Y  G  G  H  V  Q  V  S  F  S  W  Q  I  R  P  L  :  G  R  K  P  E  D  R  N  *  L  E  A  L  I  V  L  Y  T  V  T  F  L  E  A  R :   F  K  A  L  R  Q  N  F  L  F  L  K  S  *  L  K  M  V  V  L  Q  V  F  V  L  F  S  S  V  L  R  Q  S  L  M  *  D  Q  T  L  K  Y  C  Q  T  F  L  Y  Q  P  *  K  L  L  I  P  I  L  L  F  K  R  K  R :   N  L  P  S  L  E  R  K  *  L  L  L  *  S  K  G  T  Y  *  L  L  L  F  I  P  N  *  L  Q  I  L  D   : G  T  V  I  S  *  R  W  C  L  K  S  K  E  E  L  L  I  L  C  Q  H  P  P  Q  I  K  A  S  E  R  V  Q  L  L  I  F  P  Y  T  S  S  R  K  K  N  C  F  K  E  M  Q  I  M  L  K  G  Q  M  A  T  H  *  H  C  Y  V  F  I  F  V  N  F  H  L  L  I  I  H  S  K  W  C  S  C  *  D  M  K  C  *  M  P  F  I  V  V  H  N  I  K  G  F  S  L  T  L  L  I  H  K  Y  N  N  N  Y  V  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56152" stop="56098"/>
                    <exon start="56015" stop="55888"/>
                    <exon start="54647" stop="54560"/>
                    <exon start="52503" stop="52430"/>
                    <exon start="51966" stop="51775"/>
                    <exon start="51102" stop="51005"/>
                    <exon start="50729" stop="50606"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMVVGVLALQGSFNEHIAVLKRLGVKGVEVRKPEQLLNVSSLIIPGGESTTMAKLAELHNLFPALREFVQMGKPVWGTCAGLIFLANKATGQKTGGQKLIGGLDCTVHRNFFGSQIQSFETELPIPQVVAEDGGPPSFRAVFIRAPAILDVGPDVEVLSDIPLSAIETLNSNPAIQKEEESTESGKKVIVAVKQGNLLATAFHPELTADTRWHSYFLKMVPEIEGGTSDIVSTSTSNQSFGTRSIIDFPIYQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="58408" PGL_stop="65630"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58408" e_stop="58427"/>
            <exon e_start="59658" e_stop="59891"/>
            <exon e_start="60386" e_stop="60794"/>
            <exon e_start="60966" e_stop="61040"/>
            <exon e_start="61130" e_stop="61174"/>
            <exon e_start="61717" e_stop="61793"/>
            <exon e_start="61926" e_stop="62013"/>
            <exon e_start="62100" e_stop="62224"/>
            <exon e_start="63667" e_stop="63762"/>
            <exon e_start="64085" e_stop="64151"/>
            <exon e_start="64288" e_stop="64403"/>
            <exon e_start="64488" e_stop="64566"/>
            <exon e_start="64874" e_stop="65407"/>
            <exon e_start="65611" e_stop="65630"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.805" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.707" e_score="0.996"/>
          <exon-intron don_prob="0.958" acc_prob="0.991" e_score="0.995"/>
          <exon-intron don_prob="0.937" acc_prob="0.775" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.935" e_score="0.974"/>
          <exon-intron don_prob="0.892" acc_prob="0.382" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.589" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.227" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.987" e_score="0.933"/>
          <exon-only e_score="0.550"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58408" e_stop="58427" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.805" acc_prob="0.998">
            <gDNA_intron_boundary i_start="58428" i_stop="59657" i_length="1230"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="59658" e_stop="59891" e_length="234"/>
          </exon>
          <intron i_serial="2" don_prob="0.959" acc_prob="0.707">
            <gDNA_intron_boundary i_start="59892" i_stop="60385" i_length="494"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="60386" e_stop="60794" e_length="409"/>
          </exon>
          <intron i_serial="3" don_prob="0.958" acc_prob="0.991">
            <gDNA_intron_boundary i_start="60795" i_stop="60965" i_length="171"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60966" e_stop="61040" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.937" acc_prob="0.775">
            <gDNA_intron_boundary i_start="61041" i_stop="61129" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61130" e_stop="61174" e_length="45"/>
          </exon>
          <intron i_serial="5" don_prob="0.948" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61175" i_stop="61716" i_length="542"/>
          </intron>
          <exon e_serial="6" e_score="0.974">
            <gDNA_exon_boundary e_start="61717" e_stop="61793" e_length="77"/>
          </exon>
          <intron i_serial="6" don_prob="0.900" acc_prob="0.935">
            <gDNA_intron_boundary i_start="61794" i_stop="61925" i_length="132"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="61926" e_stop="62013" e_length="88"/>
          </exon>
          <intron i_serial="7" don_prob="0.892" acc_prob="0.382">
            <gDNA_intron_boundary i_start="62014" i_stop="62099" i_length="86"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="62100" e_stop="62224" e_length="125"/>
          </exon>
          <intron i_serial="8" don_prob="0.977" acc_prob="0.988">
            <gDNA_intron_boundary i_start="62225" i_stop="63666" i_length="1442"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="63667" e_stop="63762" e_length="96"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63763" i_stop="64084" i_length="322"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="64085" e_stop="64151" e_length="67"/>
          </exon>
          <intron i_serial="10" don_prob="0.966" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64152" i_stop="64287" i_length="136"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="64288" e_stop="64403" e_length="116"/>
          </exon>
          <intron i_serial="11" don_prob="0.589" acc_prob="0.950">
            <gDNA_intron_boundary i_start="64404" i_stop="64487" i_length="84"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="64488" e_stop="64566" e_length="79"/>
          </exon>
          <intron i_serial="12" don_prob="0.974" acc_prob="0.227">
            <gDNA_intron_boundary i_start="64567" i_stop="64873" i_length="307"/>
          </intron>
          <exon e_serial="13" e_score="0.933">
            <gDNA_exon_boundary e_start="64874" e_stop="65407" e_length="534"/>
          </exon>
          <intron i_serial="13" don_prob="0.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="65408" i_stop="65610" i_length="203"/>
          </intron>
          <exon e_serial="14" e_score="0.550">
            <gDNA_exon_boundary e_start="65611" e_stop="65630" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58408" stop="58427"/>
              <exon start="59658" stop="59891"/>
              <exon start="60386" stop="60794"/>
              <exon start="60966" stop="61040"/>
              <exon start="61130" stop="61174"/>
              <exon start="61717" stop="61793"/>
              <exon start="61926" stop="62013"/>
              <exon start="62100" stop="62224"/>
              <exon start="63667" stop="63762"/>
              <exon start="64085" stop="64151"/>
              <exon start="64288" stop="64403"/>
              <exon start="64488" stop="64566"/>
              <exon start="64874" stop="65407"/>
              <exon start="65611" stop="65630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320628" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATCTTTCCCAACTTTAAG : AGGTGTAATCCATTTGTGTGATGAGGCTCCAACTCTGGTGACGAATGGAAGATTCTGGCCTGACATTGATCTCTTGTCTGTTGTTATTATAAATTGGAACTCTCATGATGTCGTGGTTCAATCGCACAGGAATCAATTTGATTAACTGCTTCTTTCATTTTGCTGAATGGCATCCGATTGAATAACAAAGTTGAACTCGGGTGGATGCCCGAATAGCGTTTTCCTCTTTTTAAG : GTTCTTGAATCAAATTGTTCGATTGTGCTGTATATTAGTGTACTCCACTGGGACGTATTTTCTGTTATTTTGGATGTCTGTGATGATGCATTCTGTTGATGAAGTTACAGAAATGGGGTGCTGTGGATGTTTTGGATTCTCTTTTGCAAGAAAACCAAAAAAGGAAATTAGGCCTAATAGGGGATATGGAAACAGCTGGTCACATGAACCATTGTTACAACAAGAGGCTGAAGAAGTCGAAGATGATGGCTTTGATAGTGGCGATATAATTGATACTGGCAGTGAGGATGATGAAGTGTGTCACAGCCCGGTTAAACGTTATCAAGAGATTCTCATGGAAAGAGCTCAGAATGGGTTAATTTGCAGGGAGATCCCTGTCAAGGAAACACACAAAGTTGTGCGCACAGAG : GATGAAGATGGGAACAAGATGGTTAACGAATATGTCCGTGAACACAAAATTGGTGCTGGTAGCTACGGTAAAGTG : GTACTTTATCGAAGTTGCACTGATGGAAAACATTATGCCATTAAG : GCCTTTCACAAGTCTCACTTATCAAAGATGCGGGTGGCGCCTTCAGAAACTGCTATGGGTGATGTTCTTCGTGAGGA : GTTTCGATCATGAAAATGCTGTGCCATCCCAATATAGTTAATCTTGTTGAGGTGATTGATGATCCAGAAACAGATAACTTCTACATGG : TTCTCGAGTACGTGGAAGGAAAATGGGTTTGTGAAGATTCTGGTCCCCCGTGTGTTCTTGAAGAAAATAAAGCACGGCTGTACTTGCGTGATATAGTGTCTGGCTTGATGTATCTGCATTCTCAT : AATATCATACATGGGGATATTAAGCCAGACAATCTTTTAGTGTCTGCTGCTGGTAAGGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAG : GATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGCGTAG : GAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAG : ATAGTAAATAACCCCATCATTCTCCCCGACGATATGAATCCGTTACTGAAGAATTTATTAGAGGGGCTTCTCTGCAAAG : ATCCAACACAAAGGCTAACTCTCGAAAGTGTTTGTCAACACGAGTGGTTCCTAGGAGATGAAGGCCCCATCCCTCAGTTCTCGTGTTGGTGCCAGCGCCAAAAGTTGCAGAAAGACGTACAGGATGGGAGCGCAGAGGATACCCCTACTTGAACTAACTGCAGAGTGTTTCTAGTATGTTTATAACGTTCCGTTCTCTCTTCTCAGTTCTTGTAGGAAGATAAACTAGGATGTCTTTTTTTCCCCGGCAAATTGCATCTTGCAGGAGCAATCGGATACATGTTATGTGAACGATAGTAGAAAATGAGGTGTTCGAGTAAATTTTGTTTGGTTTCTGTCATACTCCGAGAGTACTCGTTCAGTTGTAATGGCAGCGAGACATCGCGATATGTTTTCGTTGTTTTTTTTGTTGGTAATGATGGTACAAGTTTTGTGTTTTGATGCTTAGAAGAAAGCCAACATATTTGTTTTTGTGGATATTTGTATGTGTTTTTTTTATATGAAGAAGAATTTTCATATGATAGTGTAAAGTAAA : TATTACAGAGGCGGAGCCAG</gDNA_template>
            <first_frame> *  S  F  P  T  L  R :   G  V  I  H  L  C  D  E  A  P  T  L  V  T  N  G  R  F  W  P  D  I  D  L  L  S  V  V  I  I  N  W  N  S  H  D  V  V  V  Q  S  H  R  N  Q  F  D  *  L  L  L  S  F  C  *  M  A  S  D  *  I  T  K  L  N  S  G  G  C  P  N  S  V  F  L  F  L  R :   F  L  N  Q  I  V  R  L  C  C  I  L  V  Y  S  T  G  T  Y  F  L  L  F  W  M  S  V  M  M  H  S  V  D  E  V  T  E  M  G  C  C  G  C  F  G  F  S  F  A  R  K  P  K  K  E  I  R  P  N  R  G  Y  G  N  S  W  S  H  E  P  L  L  Q  Q  E  A  E  E  V  E  D  D  G  F  D  S  G  D  I  I  D  T  G  S  E  D  D  E  V  C  H  S  P  V  K  R  Y  Q  E  I  L  M  E  R  A  Q  N  G  L  I  C  R  E  I  P  V  K  E  T  H  K  V  V  R  T  E  :  D  E  D  G  N  K  M  V  N  E  Y  V  R  E  H  K  I  G  A  G  S  Y  G  K  V  :  V  L  Y  R  S  C  T  D  G  K  H  Y  A  I  K  :  A  F  H  K  S  H  L  S  K  M  R  V  A  P  S  E  T  A  M  G  D  V  L  R  E  E :   F  R  S  *  K  C  C  A  I  P  I  *  L  I  L  L  R  *  L  M  I  Q  K  Q  I  T  S  T  W  :  F  S  S  T  W  K  E  N  G  F  V  K  I  L  V  P  R  V  F  L  K  K  I  K  H  G  C  T  C  V  I  *  C  L  A  *  C  I  C  I  L  I :   I  S  Y  M  G  I  L  S  Q  T  I  F  *  C  L  L  L  V  R  *  R  L  V  I  S  A  S  A  K  F  L  R :   M  I  M  I  N  S  V  D  L  L  A  L  L  F  S  L  L  L  N  A  A  *  :  E  I  D  I  M  E  N  V  L  T  R  G  R  L  V  L  P  F  I  A  *  S  W  E  N  T  R  F  *  E  K  L  S  R  I  H  M  T  R :   *  *  I  T  P  S  F  S  P  T  I  *  I  R  Y  *  R  I  Y  *  R  G  F  S  A  K  :  I  Q  H  K  G  *  L  S  K  V  F  V  N  T  S  G  S  *  E  M  K  A  P  S  L  S  S  R  V  G  A  S  A  K  S  C  R  K  T  Y  R  M  G  A  Q  R  I  P  L  L  E  L  T  A  E  C  F  *  Y  V  Y  N  V  P  F  S  L  L  S  S  C  R  K  I  N  *  D  V  F  F  S  P  A  N  C  I  L  Q  E  Q  S  D  T  C  Y  V  N  D  S  R  K  *  G  V  R  V  N  F  V  W  F  L  S  Y  S  E  S  T  R  S  V  V  M  A  A  R  H  R  D  M  F  S  L  F  F  L  L  V  M  M  V  Q  V  L  C  F  D  A  *  K  K  A  N  I  F  V  F  V  D  I  C  M  C  F  F  Y  M  K  K  N  F  H  M  I  V  *  S  K  :  Y  Y  R  G  G  A   </first_frame>
            <second_frame>  D  L  S  Q  L  *   : E  V  *  S  I  C  V  M  R  L  Q  L  W  *  R  M  E  D  S  G  L  T  L  I  S  C  L  L  L  L  *  I  G  T  L  M  M  S  W  F  N  R  T  G  I  N  L  I  N  C  F  F  H  F  A  E  W  H  P  I  E  *  Q  S  *  T  R  V  D  A  R  I  A  F  S  S  F  *   : G  S  *  I  K  L  F  D  C  A  V  Y  *  C  T  P  L  G  R  I  F  C  Y  F  G  C  L  *  *  C  I  L  L  M  K  L  Q  K  W  G  A  V  D  V  L  D  S  L  L  Q  E  N  Q  K  R  K  L  G  L  I  G  D  M  E  T  A  G  H  M  N  H  C  Y  N  K  R  L  K  K  S  K  M  M  A  L  I  V  A  I  *  L  I  L  A  V  R  M  M  K  C  V  T  A  R  L  N  V  I  K  R  F  S  W  K  E  L  R  M  G  *  F  A  G  R  S  L  S  R  K  H  T  K  L  C  A  Q  R :   M  K  M  G  T  R  W  L  T  N  M  S  V  N  T  K  L  V  L  V  A  T  V  K  W :   Y  F  I  E  V  A  L  M  E  N  I  M  P  L  R :   P  F  T  S  L  T  Y  Q  R  C  G  W  R  L  Q  K  L  L  W  V  M  F  F  V  R   : S  F  D  H  E  N  A  V  P  S  Q  Y  S  *  S  C  *  G  D  *  *  S  R  N  R  *  L  L  H  G :   S  R  V  R  G  R  K  M  G  L  *  R  F  W  S  P  V  C  S  *  R  K  *  S  T  A  V  L  A  *  Y  S  V  W  L  D  V  S  A  F  S   : *  Y  H  T  W  G  Y  *  A  R  Q  S  F  S  V  C  C  W  *  G  E  D  W  *  F  Q  R  Q  P  S  F  *   : G  *  *  *  *  T  P  S  I  S  W  H  S  C  F  H  C  S  *  M  L  R  R :   R  *  I  S  W  K  M  C  *  H  V  G  G  W  C  Y  P  L  L  H  D  L  G  K  I  P  V  S  R  R  N  S  P  G  Y  I  *  Q   : D  S  K  *  P  H  H  S  P  R  R  Y  E  S  V  T  E  E  F  I  R  G  A  S  L  Q  R :   S  N  T  K  A  N  S  R  K  C  L  S  T  R  V  V  P  R  R  *  R  P  H  P  S  V  L  V  L  V  P  A  P  K  V  A  E  R  R  T  G  W  E  R  R  G  Y  P  Y  L  N  *  L  Q  S  V  S  S  M  F  I  T  F  R  S  L  F  S  V  L  V  G  R  *  T  R  M  S  F  F  P  R  Q  I  A  S  C  R  S  N  R  I  H  V  M  *  T  I  V  E  N  E  V  F  E  *  I  L  F  G  F  C  H  T  P  R  V  L  V  Q  L  *  W  Q  R  D  I  A  I  C  F  R  C  F  F  C  W  *  *  W  Y  K  F  C  V  L  M  L  R  R  K  P  T  Y  L  F  L  W  I  F  V  C  V  F  F  I  *  R  R  I  F  I  *  *  C  K  V  N :   I  T  E  A  E  P  </second_frame>
            <third_frame>   I  F  P  N  F  K  :  R  C  N  P  F  V  *  *  G  S  N  S  G  D  E  W  K  I  L  A  *  H  *  S  L  V  C  C  Y  Y  K  L  E  L  S  *  C  R  G  S  I  A  Q  E  S  I  *  L  T  A  S  F  I  L  L  N  G  I  R  L  N  N  K  V  E  L  G  W  M  P  E  *  R  F  P  L  F  K  :  V  L  E  S  N  C  S  I  V  L  Y  I  S  V  L  H  W  D  V  F  S  V  I  L  D  V  C  D  D  A  F  C  *  *  S  Y  R  N  G  V  L  W  M  F  W  I  L  F  C  K  K  T  K  K  G  N  *  A  *  *  G  I  W  K  Q  L  V  T  *  T  I  V  T  T  R  G  *  R  S  R  R  *  W  L  *  *  W  R  Y  N  *  Y  W  Q  *  G  *  *  S  V  S  Q  P  G  *  T  L  S  R  D  S  H  G  K  S  S  E  W  V  N  L  Q  G  D  P  C  Q  G  N  T  Q  S  C  A  H  R   : G  *  R  W  E  Q  D  G  *  R  I  C  P  *  T  Q  N  W  C  W  *  L  R  *  S   : G  T  L  S  K  L  H  *  W  K  T  L  C  H  *   : G  L  S  Q  V  S  L  I  K  D  A  G  G  A  F  R  N  C  Y  G  *  C  S  S  *  G  :  V  S  I  M  K  M  L  C  H  P  N  I  V  N  L  V  E  V  I  D  D  P  E  T  D  N  F  Y  M   : V  L  E  Y  V  E  G  K  W  V  C  E  D  S  G  P  P  C  V  L  E  E  N  K  A  R  L  Y  L  R  D  I  V  S  G  L  M  Y  L  H  S  H  :  N  I  I  H  G  D  I  K  P  D  N  L  L  V  S  A  A  G  K  V  K  I  G  D  F  S  V  S  Q  V  F  E  :  D  D  N  D  K  L  R  R  S  P  G  T  P  V  F  T  A  P  E  C  C  V   : G  D  R  Y  H  G  K  C  A  D  T  W  A  V  G  V  T  L  Y  C  M  I  L  G  K  Y  P  F  L  G  E  T  L  Q  D  T  Y  D  K  :  I  V  N  N  P  I  I  L  P  D  D  M  N  P  L  L  K  N  L  L  E  G  L  L  C  K   : D  P  T  Q  R  L  T  L  E  S  V  C  Q  H  E  W  F  L  G  D  E  G  P  I  P  Q  F  S  C  W  C  Q  R  Q  K  L  Q  K  D  V  Q  D  G  S  A  E  D  T  P  T  *  T  N  C  R  V  F  L  V  C  L  *  R  S  V  L  S  S  Q  F  L  *  E  D  K  L  G  C  L  F  F  P  G  K  L  H  L  A  G  A  I  G  Y  M  L  C  E  R  *  *  K  M  R  C  S  S  K  F  C  L  V  S  V  I  L  R  E  Y  S  F  S  C  N  G  S  E  T  S  R  Y  V  F  V  V  F  F  V  G  N  D  G  T  S  F  V  F  *  C  L  E  E  S  Q  H  I  C  F  C  G  Y  L  Y  V  F  F  L  Y  E  E  E  F  S  Y  D  S  V  K  *   : I  L  Q  R  R  S  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61791" stop="61793"/>
                    <exon start="61926" stop="62013"/>
                    <exon start="62100" stop="62224"/>
                    <exon start="63667" stop="63762"/>
                    <exon start="64085" stop="64151"/>
                    <exon start="64288" stop="64403"/>
                    <exon start="64488" stop="64566"/>
                    <exon start="64874" stop="65025"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVSIMKMLCHPNIVNLVEVIDDPETDNFYMVLEYVEGKWVCEDSGPPCVLEENKARLYLRDIVSGLMYLHSHNIIHGDIKPDNLLVSAAGKVKIGDFSVSQVFEDDNDKLRRSPGTPVFTAPECCVGDRYHGKCADTWAVGVTLYCMILGKYPFLGETLQDTYDKIVNNPIILPDDMNPLLKNLLEGLLCKDPTQRLTLESVCQHEWFLGDEGPIPQFSCWCQRQKLQKDVQDGSAEDTPT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59839" stop="59891"/>
                    <exon start="60386" stop="60794"/>
                    <exon start="60966" stop="61040"/>
                    <exon start="61130" stop="61174"/>
                    <exon start="61717" stop="61793"/>
                    <exon start="61926" stop="61938"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITKLNSGGCPNSVFLFLRFLNQIVRLCCILVYSTGTYFLLFWMSVMMHSVDEVTEMGCCGCFGFSFARKPKKEIRPNRGYGNSWSHEPLLQQEAEEVEDDGFDSGDIIDTGSEDDEVCHSPVKRYQEILMERAQNGLICREIPVKETHKVVRTEDEDGNKMVNEYVREHKIGAGSYGKVVLYRSCTDGKHYAIKAFHKSHLSKMRVAPSETAMGDVLREEFRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="58453" e_stop="58977"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="58453" e_stop="58977" e_length="525"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58453" stop="58977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332023" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCTTGGAAAAAGATTGTGTTTTTAATTGATTTTGATTGTTGTTATGAACAATTATTAGGAGAAAGATTGAAGCTTTTGATGTTTTTAGATTTCTTTCAAAGAATCTTGGAAAAAGATTGTATTTTTATGAGCAATTGTTAGGAGAATGATTGAACCATTTGATGGTTTTGATTTCCTATAAAGAATATTGATAGAAGATTGTTTTTTATTGGGTTTGATTGTTTTATGAACAATTGTTAGGAGGATGATTGAACCTTTGAATGGTTTTGATTGTCCCCAAAGAATCTTGGAAAGAGATTGTATTTTTATTGGTTTTGATTGTTTTTATGGAAATTTGTATGGAGAATGACTGAACCCTTTGATGGTTTTGATTTACTATAAAGTGTCTTGGGAAATATATGGTTTTTATTGGTTTTGATCATTTTTCTGAAAACATTGTGATCCAAATGATAGAACCTTTTGATGTTTTTAATTTTCTACAAAGAATTTTGGGAAAATATTGTATTTTTGTAGGTTTTGATTG</gDNA_template>
            <first_frame> N  L  G  K  R  L  C  F  *  L  I  L  I  V  V  M  N  N  Y  *  E  K  D  *  S  F  *  C  F  *  I  S  F  K  E  S  W  K  K  I  V  F  L  *  A  I  V  R  R  M  I  E  P  F  D  G  F  D  F  L  *  R  I  L  I  E  D  C  F  L  L  G  L  I  V  L  *  T  I  V  R  R  M  I  E  P  L  N  G  F  D  C  P  Q  R  I  L  E  R  D  C  I  F  I  G  F  D  C  F  Y  G  N  L  Y  G  E  *  L  N  P  L  M  V  L  I  Y  Y  K  V  S  W  E  I  Y  G  F  Y  W  F  *  S  F  F  *  K  H  C  D  P  N  D  R  T  F  *  C  F  *  F  S  T  K  N  F  G  K  I  L  Y  F  C  R  F  *  L </first_frame>
            <second_frame>  I  L  E  K  D  C  V  F  N  *  F  *  L  L  L  *  T  I  I  R  R  K  I  E  A  F  D  V  F  R  F  L  S  K  N  L  G  K  R  L  Y  F  Y  E  Q  L  L  G  E  *  L  N  H  L  M  V  L  I  S  Y  K  E  Y  *  *  K  I  V  F  Y  W  V  *  L  F  Y  E  Q  L  L  G  G  *  L  N  L  *  M  V  L  I  V  P  K  E  S  W  K  E  I  V  F  L  L  V  L  I  V  F  M  E  I  C  M  E  N  D  *  T  L  *  W  F  *  F  T  I  K  C  L  G  K  Y  M  V  F  I  G  F  D  H  F  S  E  N  I  V  I  Q  M  I  E  P  F  D  V  F  N  F  L  Q  R  I  L  G  K  Y  C  I  F  V  G  F  D   </second_frame>
            <third_frame>   S  W  K  K  I  V  F  L  I  D  F  D  C  C  Y  E  Q  L  L  G  E  R  L  K  L  L  M  F  L  D  F  F  Q  R  I  L  E  K  D  C  I  F  M  S  N  C  *  E  N  D  *  T  I  *  W  F  *  F  P  I  K  N  I  D  R  R  L  F  F  I  G  F  D  C  F  M  N  N  C  *  E  D  D  *  T  F  E  W  F  *  L  S  P  K  N  L  G  K  R  L  Y  F  Y  W  F  *  L  F  L  W  K  F  V  W  R  M  T  E  P  F  D  G  F  D  L  L  *  S  V  L  G  N  I  W  F  L  L  V  L  I  I  F  L  K  T  L  *  S  K  *  *  N  L  L  M  F  L  I  F  Y  K  E  F  W  E  N  I  V  F  L  *  V  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0161D01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="68642" PGL_stop="70627"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68642" e_stop="68829"/>
            <exon e_start="69668" e_stop="70627"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.991" e_score="0.995"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="68642" e_stop="68829" e_length="188"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="68830" i_stop="69667" i_length="838"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="69668" e_stop="70627" e_length="960"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68642" stop="68829"/>
              <exon start="69668" stop="70627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326731" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCTCTCTCTAAAAATTCCGGTGAGATGGTCGCCGTAAGTTCGTTTTCCGGCGAATATCCCGGCGTTATAGTTACCTGTGATCGGATCGAAACTTACTTCACTCCAGCAATGGAATAATCACCACACTGGTTTTTATCTCCGGCGACGCTAATTTGCGACTGGCAGAAATAAGCAGCTGGATTTCCG : ATAAGGAGTCATTAGCGGTTGGTAGTGAATTACTGGTTTTTGGCCGTGAGTTATTTGATTTTGCTATATGGAAATACAGTTTGATTCAAAACAACTGGGAAAAATGTGAAGGGATGAATCATCGTCGTTGTCTGTTTGGATCGGGTAGTCTTGGTTCAATTTCTATTGTTGCAGGGGGTAGTGACAAGAATGGGAATGTACTAAAATCTGCCGAGCTTTATGATTCTTTGACTGGTACATGGGAAATACTGCCCAACATGCATTCTCCCCGCAGATTATGCTCTGGCTTTTTCATGGATGGAAAATTTTATGTGATAGGTGGGATGACTAATCCTACCGATTCTTTGACTTGTGGGGAAGAGTTTGATCTACAAACAAGGAAGTGGAGGAAAATTGAGGGCATGTATCCAAACGTCAATAGAGCTGCTCAGGCACCTCCTCTTGTTGCAGTTGTTAATAACCAACTATATGCAGTTGAATATCTAACCAACATGGTTAAGAAGTATGACAAGAAAAATAACTCATGGGAGGTATTGGGAAGACTTCCCGTGAGGGCTGATTCTTCGAATGGTTGGGGTCTTGCTTTCAAAGCATGTGGTGAAGAACTTCTTGTGGTAGGTGGCAACAGGGGTCCAGAAGGTGAAGCTATTATATTGAGTTCTTGGGCACCAAAATCAGGGTGTAAAGACGGCACCTTGGATTGGAAGGTCATCGGCCTAAAAGAGCATTCTGGTGTCTTTGTATACAATTGTGCCGTGATGGGTTGTTGAGACTCATCCAACCAAATGGAGAAAGAAGTCATTTGTTTCAACTGTTGTTTCTAGCGTAATTCCAACACATTGTTTGATTTATTAGCATTTCTTTTTATTTAACATCTTTCAGGTGTTTGAGATAAGCAGTTGTTCTTAGCTAAAATGTCCTCTTAACTGGATGGTTATTTTCACTCACTCATTCTGCAGA</gDNA_template>
            <first_frame> I  L  S  L  K  I  P  V  R  W  S  P  *  V  R  F  P  A  N  I  P  A  L  *  L  P  V  I  G  S  K  L  T  S  L  Q  Q  W  N  N  H  H  T  G  F  Y  L  R  R  R  *  F  A  T  G  R  N  K  Q  L  D  F  R :   *  G  V  I  S  G  W  *  *  I  T  G  F  W  P  *  V  I  *  F  C  Y  M  E  I  Q  F  D  S  K  Q  L  G  K  M  *  R  D  E  S  S  S  L  S  V  W  I  G  *  S  W  F  N  F  Y  C  C  R  G  *  *  Q  E  W  E  C  T  K  I  C  R  A  L  *  F  F  D  W  Y  M  G  N  T  A  Q  H  A  F  S  P  Q  I  M  L  W  L  F  H  G  W  K  I  L  C  D  R  W  D  D  *  S  Y  R  F  F  D  L  W  G  R  V  *  S  T  N  K  E  V  E  E  N  *  G  H  V  S  K  R  Q  *  S  C  S  G  T  S  S  C  C  S  C  *  *  P  T  I  C  S  *  I  S  N  Q  H  G  *  E  V  *  Q  E  K  *  L  M  G  G  I  G  K  T  S  R  E  G  *  F  F  E  W  L  G  S  C  F  Q  S  M  W  *  R  T  S  C  G  R  W  Q  Q  G  S  R  R  *  S  Y  Y  I  E  F  L  G  T  K  I  R  V  *  R  R  H  L  G  L  E  G  H  R  P  K  R  A  F  W  C  L  C  I  Q  L  C  R  D  G  L  L  R  L  I  Q  P  N  G  E  R  S  H  L  F  Q  L  L  F  L  A  *  F  Q  H  I  V  *  F  I  S  I  S  F  Y  L  T  S  F  R  C  L  R  *  A  V  V  L  S  *  N  V  L  L  T  G  W  L  F  S  L  T  H  S  A   </first_frame>
            <second_frame>  F  S  L  *  K  F  R  *  D  G  R  R  K  F  V  F  R  R  I  S  R  R  Y  S  Y  L  *  S  D  R  N  L  L  H  S  S  N  G  I  I  T  T  L  V  F  I  S  G  D  A  N  L  R  L  A  E  I  S  S  W  I  S   : D  K  E  S  L  A  V  G  S  E  L  L  V  F  G  R  E  L  F  D  F  A  I  W  K  Y  S  L  I  Q  N  N  W  E  K  C  E  G  M  N  H  R  R  C  L  F  G  S  G  S  L  G  S  I  S  I  V  A  G  G  S  D  K  N  G  N  V  L  K  S  A  E  L  Y  D  S  L  T  G  T  W  E  I  L  P  N  M  H  S  P  R  R  L  C  S  G  F  F  M  D  G  K  F  Y  V  I  G  G  M  T  N  P  T  D  S  L  T  C  G  E  E  F  D  L  Q  T  R  K  W  R  K  I  E  G  M  Y  P  N  V  N  R  A  A  Q  A  P  P  L  V  A  V  V  N  N  Q  L  Y  A  V  E  Y  L  T  N  M  V  K  K  Y  D  K  K  N  N  S  W  E  V  L  G  R  L  P  V  R  A  D  S  S  N  G  W  G  L  A  F  K  A  C  G  E  E  L  L  V  V  G  G  N  R  G  P  E  G  E  A  I  I  L  S  S  W  A  P  K  S  G  C  K  D  G  T  L  D  W  K  V  I  G  L  K  E  H  S  G  V  F  V  Y  N  C  A  V  M  G  C  *  D  S  S  N  Q  M  E  K  E  V  I  C  F  N  C  C  F  *  R  N  S  N  T  L  F  D  L  L  A  F  L  F  I  *  H  L  S  G  V  *  D  K  Q  L  F  L  A  K  M  S  S  *  L  D  G  Y  F  H  S  L  I  L  Q  </second_frame>
            <third_frame>   S  L  S  K  N  S  G  E  M  V  A  V  S  S  F  S  G  E  Y  P  G  V  I  V  T  C  D  R  I  E  T  Y  F  T  P  A  M  E  *  S  P  H  W  F  L  S  P  A  T  L  I  C  D  W  Q  K  *  A  A  G  F  P  :  I  R  S  H  *  R  L  V  V  N  Y  W  F  L  A  V  S  Y  L  I  L  L  Y  G  N  T  V  *  F  K  T  T  G  K  N  V  K  G  *  I  I  V  V  V  C  L  D  R  V  V  L  V  Q  F  L  L  L  Q  G  V  V  T  R  M  G  M  Y  *  N  L  P  S  F  M  I  L  *  L  V  H  G  K  Y  C  P  T  C  I  L  P  A  D  Y  A  L  A  F  S  W  M  E  N  F  M  *  *  V  G  *  L  I  L  P  I  L  *  L  V  G  K  S  L  I  Y  K  Q  G  S  G  G  K  L  R  A  C  I  Q  T  S  I  E  L  L  R  H  L  L  L  L  Q  L  L  I  T  N  Y  M  Q  L  N  I  *  P  T  W  L  R  S  M  T  R  K  I  T  H  G  R  Y  W  E  D  F  P  *  G  L  I  L  R  M  V  G  V  L  L  S  K  H  V  V  K  N  F  L  W  *  V  A  T  G  V  Q  K  V  K  L  L  Y  *  V  L  G  H  Q  N  Q  G  V  K  T  A  P  W  I  G  R  S  S  A  *  K  S  I  L  V  S  L  Y  T  I  V  P  *  W  V  V  E  T  H  P  T  K  W  R  K  K  S  F  V  S  T  V  V  S  S  V  I  P  T  H  C  L  I  Y  *  H  F  F  L  F  N  I  F  Q  V  F  E  I  S  S  C  S  *  L  K  C  P  L  N  W  M  V  I  F  T  H  S  F  C  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68724" stop="68829"/>
                    <exon start="69668" stop="70437"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDRNLLHSSNGIITTLVFISGDANLRLAEISSWISDKESLAVGSELLVFGRELFDFAIWKYSLIQNNWEKCEGMNHRRCLFGSGSLGSISIVAGGSDKNGNVLKSAELYDSLTGTWEILPNMHSPRRLCSGFFMDGKFYVIGGMTNPTDSLTCGEEFDLQTRKWRKIEGMYPNVNRAAQAPPLVAVVNNQLYAVEYLTNMVKKYDKKNNSWEVLGRLPVRADSSNGWGLAFKACGEELLVVGGNRGPEGEAIILSSWAPKSGCKDGTLDWKVIGLKEHSGVFVYNCAVMGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="75575" PGL_stop="73945"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75575" e_stop="73945"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="75575" e_stop="73945" e_length="1631"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75575" stop="74692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74710" stop="73945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321300" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGATTGTGAAAGGGTTCTTGTTTGTTACTGTTATGATTCTTGTGTCATTTGTTCAAATGACACATATGATTCAGAAATCTGAACCTATAATGTTGAATTTTGGTGTATGCCCTTTGAACTTTGGGTCTAATGAGTATATGAATGTGACCGGGTTCGTTAAACCTGTTTCTGGATTGGGGATTTCGCTGTTTGGAGCTTCTTTGATGAAGCGGGACGACGAAAAATTGACCAAGGATGTGTTTAAGGAGCTAATGGAAAAGGATTTCTTGGATTTGAATGCTAATGCATTGTGTGTTGGGAAGAAATCGTCGTTTGCAGCTTTGGTGCTGCGAGAATTGGGACTCTTGAGTGCTGTTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTACGAGCTCGATCATGAGAACAATTCTTTCGATTTTGTGTTCTCGAGGGATCTGGATAAGGTCACTGTACCAGCTCTTATGGTGCTTGAGATTGAGCGTGTCTTACGTCCAGGGGGCACCGGTGTTATGCTCGTGGGTTCTAGTAGTTTCTACGCGGGTAACTTGGTAAAAGGCAACTTGATAAGGTCTGCCACCCCAGTTTCGTCGTTCTTGAAGAGTTCTGATGTTGTGCACGTATGTGGGGTTGGCACGTATACTCTAGTGATGTTCAAGAAAAGATCAGAGATTGTTCAATCTCTCGTGCACTCTGTGCTGCCTGCTAATTGTCCTTCCAATGTGAACAACAAGCCGTACTTGAAGCACCTTGAGCCACTCGTGGAAAAGAAGCTTGGACAGTTTGAGACACAAATCTCATACTTGCCCAAGTTCATGAACATCTCATCTAGGAACAAACTGGTGTATATCAACGTTGGTGCAGGGGAATTCGTAGAATCAACTCTTGCAAGAACATTCAAGCCTCATTATCCAATCCCTCACCACTTGTTCAATGTTTTCGTCATTGATCATAACACCTCCACACTGTCCTTATATGTGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTTTGAGTTTATATAAAAATATGTGTTATGTGTTTTAAGAACTATGCTTTATTGTGATAATTAACAT</gDNA_template>
            <first_frame> L  I  V  K  G  F  L  F  V  T  V  M  I  L  V  S  F  V  Q  M  T  H  M  I  Q  K  S  E  P  I  M  L  N  F  G  V  C  P  L  N  F  G  S  N  E  Y  M  N  V  T  G  F  V  K  P  V  S  G  L  G  I  S  L  F  G  A  S  L  M  K  R  D  D  E  K  L  T  K  D  V  F  K  E  L  M  E  K  D  F  L  D  L  N  A  N  A  L  C  V  G  K  K  S  S  F  A  A  L  V  L  R  E  L  G  L  L  S  A  V  G  V  D  A  H  P  Y  F  S  L  V  W  R  R  F  M  Y  E  L  D  H  E  N  N  S  F  D  F  V  F  S  R  D  L  D  K  V  T  V  P  A  L  M  V  L  E  I  E  R  V  L  R  P  G  G  T  G  V  M  L  V  G  S  S  S  F  Y  A  G  N  L  V  K  G  N  L  I  R  S  A  T  P  V  S  S  F  L  K  S  S  D  V  V  H  V  C  G  V  G  T  Y  T  L  V  M  F  K  K  R  S  E  I  V  Q  S  L  V  H  S  V  L  P  A  N  C  P  S  N  V  N  N  K  P  Y  L  K  H  L  E  P  L  V  E  K  K  L  G  Q  F  E  T  Q  I  S  Y  L  P  K  F  M  N  I  S  S  R  N  K  L  V  Y  I  N  V  G  A  G  E  F  V  E  S  T  L  A  R  T  F  K  P  H  Y  P  I  P  H  H  L  F  N  V  F  V  I  D  H  N  T  S  T  L  S  L  Y  V  K  N  P  G  I  N  F  V  Y  H  P  G  L  A  V  A  G  E  T  T  L  S  S  V  D  T  D  E  Y  L  G  A  P  L  D  H  E  G  F  D  F  I  H  W  F  S  E  T  V  K  D  G  D  Y  V  I  L  M  M  N  A  R  A  P  E  L  N  I  L  A  E  L  F  Q  T  G  S  I  C  H  V  D  E  L  F  L  R  C  S  A  A  D  C  R  N  A  L  C  G  D  C  M  S  L  F  K  T  L  R  R  S  G  V  F  A  H  Q  W  W  G  D  *  S  F  V  K  S  F  K  C  I  L  C  C  L  V  F  N  F  C  F  S  V  C  W  E  *  I  E  G  R  L  *  V  E  S  *  Y  C  N  L  T  F  S  L  L  E  L  H  L  M  S  C  V  C  V  H  V  C  M  *  V  A  C  L  *  V  S  F  L  S  L  Y  K  N  M  C  Y  V  F  *  E  L  C  F  I  V  I  I  N   </first_frame>
            <second_frame>  *  L  *  K  G  S  C  L  L  L  L  *  F  L  C  H  L  F  K  *  H  I  *  F  R  N  L  N  L  *  C  *  I  L  V  Y  A  L  *  T  L  G  L  M  S  I  *  M  *  P  G  S  L  N  L  F  L  D  W  G  F  R  C  L  E  L  L  *  *  S  G  T  T  K  N  *  P  R  M  C  L  R  S  *  W  K  R  I  S  W  I  *  M  L  M  H  C  V  L  G  R  N  R  R  L  Q  L  W  C  C  E  N  W  D  S  *  V  L  L  V  L  M  H  T  R  I  S  L  L  Y  G  E  D  L  C  T  S  S  I  M  R  T  I  L  S  I  L  C  S  R  G  I  W  I  R  S  L  Y  Q  L  L  W  C  L  R  L  S  V  S  Y  V  Q  G  A  P  V  L  C  S  W  V  L  V  V  S  T  R  V  T  W  *  K  A  T  *  *  G  L  P  P  Q  F  R  R  S  *  R  V  L  M  L  C  T  Y  V  G  L  A  R  I  L  *  *  C  S  R  K  D  Q  R  L  F  N  L  S  C  T  L  C  C  L  L  I  V  L  P  M  *  T  T  S  R  T  *  S  T  L  S  H  S  W  K  R  S  L  D  S  L  R  H  K  S  H  T  C  P  S  S  *  T  S  H  L  G  T  N  W  C  I  S  T  L  V  Q  G  N  S  *  N  Q  L  L  Q  E  H  S  S  L  I  I  Q  S  L  T  T  C  S  M  F  S  S  L  I  I  T  P  P  H  C  P  Y  M  *  R  I  L  V  L  T  L  C  T  I  Q  D  L  L  S  P  E  R  L  L  C  H  L  L  T  L  T  N  I  W  V  H  H  *  I  M  K  D  S  T  S  F  I  G  L  V  K  Q  L  K  T  E  T  M  S  S  S  *  *  M  L  E  H  Q  S  *  T  F  *  Q  N  Y  S  K  L  D  Q  Y  A  T  S  M  S  C  S  F  A  A  P  L  Q  I  A  E  M  L  F  V  E  T  A  *  A  F  S  K  L  *  G  E  V  V  C  L  L  I  N  G  G  E  T  R  V  L  S  R  V  L  S  A  F  Y  V  V  L  C  S  T  F  A  L  V  S  V  G  N  K  L  R  G  G  C  R  L  K  V  D  T  V  I  L  L  S  P  F  W  N  C  T  *  C  L  V  Y  V  S  M  C  V  C  E  L  L  V  S  K  F  L  F  *  V  Y  I  K  I  C  V  M  C  F  K  N  Y  A  L  L  *  *  L  T  </second_frame>
            <third_frame>   D  C  E  R  V  L  V  C  Y  C  Y  D  S  C  V  I  C  S  N  D  T  Y  D  S  E  I  *  T  Y  N  V  E  F  W  C  M  P  F  E  L  W  V  *  *  V  Y  E  C  D  R  V  R  *  T  C  F  W  I  G  D  F  A  V  W  S  F  F  D  E  A  G  R  R  K  I  D  Q  G  C  V  *  G  A  N  G  K  G  F  L  G  F  E  C  *  C  I  V  C  W  E  E  I  V  V  C  S  F  G  A  A  R  I  G  T  L  E  C  C  W  C  *  C  T  P  V  F  L  S  C  M  E  K  I  Y  V  R  A  R  S  *  E  Q  F  F  R  F  C  V  L  E  G  S  G  *  G  H  C  T  S  S  Y  G  A  *  D  *  A  C  L  T  S  R  G  H  R  C  Y  A  R  G  F  *  *  F  L  R  G  *  L  G  K  R  Q  L  D  K  V  C  H  P  S  F  V  V  L  E  E  F  *  C  C  A  R  M  W  G  W  H  V  Y  S  S  D  V  Q  E  K  I  R  D  C  S  I  S  R  A  L  C  A  A  C  *  L  S  F  Q  C  E  Q  Q  A  V  L  E  A  P  *  A  T  R  G  K  E  A  W  T  V  *  D  T  N  L  I  L  A  Q  V  H  E  H  L  I  *  E  Q  T  G  V  Y  Q  R  W  C  R  G  I  R  R  I  N  S  C  K  N  I  Q  A  S  L  S  N  P  S  P  L  V  Q  C  F  R  H  *  S  *  H  L  H  T  V  L  I  C  E  E  S  W  Y  *  L  C  V  P  S  R  T  C  C  R  R  R  D  Y  F  V  I  C  *  H  *  R  I  F  G  C  T  T  R  S  *  R  I  R  L  H  S  L  V  *  *  N  S  *  R  R  R  L  C  H  P  H  D  E  C  *  S  T  R  A  K  H  S  S  R  T  I  P  N  W  I  N  M  P  R  R  *  A  V  P  S  L  L  R  C  R  L  Q  K  C  S  L  W  R  L  H  E  P  F  Q  N  S  K  E  K  W  C  V  C  S  S  M  V  G  R  L  E  F  C  Q  E  F  *  V  H  F  M  L  S  C  V  Q  L  L  L  *  C  L  L  G  I  N  *  G  E  V  V  G  *  K  L  I  L  *  S  Y  F  L  P  S  G  T  A  L  D  V  L  C  M  C  P  C  V  Y  V  S  C  L  S  L  S  F  F  F  E  F  I  *  K  Y  V  L  C  V  L  R  T  M  L  Y  C  D  N  *  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75575" stop="74211"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1362</number_coding_nucleotides>
                  <number_encoded_amino_acids>454</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIVKGFLFVTVMILVSFVQMTHMIQKSEPIMLNFGVCPLNFGSNEYMNVTGFVKPVSGLGISLFGASLMKRDDEKLTKDVFKELMEKDFLDLNANALCVGKKSSFAALVLRELGLLSAVGVDAHPYFSLVWRRFMYELDHENNSFDFVFSRDLDKVTVPALMVLEIERVLRPGGTGVMLVGSSSFYAGNLVKGNLIRSATPVSSFLKSSDVVHVCGVGTYTLVMFKKRSEIVQSLVHSVLPANCPSNVNNKPYLKHLEPLVEKKLGQFETQISYLPKFMNISSRNKLVYINVGAGEFVESTLARTFKPHYPIPHHLFNVFVIDHNTSTLSLYVKNPGINFVYHPGLAVAGETTLSSVDTDEYLGAPLDHEGFDFIHWFSETVKDGDYVILMMNARAPELNILAELFQTGSICHVDELFLRCSAADCRNALCGDCMSLFKTLRRSGVFAHQWWGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="79551" PGL_stop="81955"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79551" e_stop="79718"/>
            <exon e_start="81330" e_stop="81422"/>
            <exon e_start="81510" e_stop="81824"/>
            <exon e_start="81936" e_stop="81955"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.837" acc_prob="0.972" e_score="0.994"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.838" e_score="0.978"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="79551" e_stop="79718" e_length="168"/>
          </exon>
          <intron i_serial="1" don_prob="0.837" acc_prob="0.972">
            <gDNA_intron_boundary i_start="79719" i_stop="81329" i_length="1611"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81330" e_stop="81422" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="81423" i_stop="81509" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="81510" e_stop="81824" e_length="315"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.838">
            <gDNA_intron_boundary i_start="81825" i_stop="81935" i_length="111"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81936" e_stop="81955" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79551" stop="79718"/>
              <exon start="81330" stop="81422"/>
              <exon start="81510" stop="81824"/>
              <exon start="81936" stop="81955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342051" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACGACGGGGAGAAGGCAGAGGATAAAGAAGAGAAGTGCAATGACGTTATGATGACTGAGGCGTTAGACGATGACGAATGTTCTTCGGTTTCTGGGTTGTCAAAATGCTTGGTGAACCTTCCCATGAAGTGGAGTTCAGATAATTTAAGGTGTTTCCTCAAAGAACAT : GGTGTTACTTTTAAATCAGCAAAAAAGAAGAAAGGCATGGCTGTAGGATTTGCTACTTTTGAAAATGCAGAACAAGTGAAAACTGCTGTGAAG : GAATTGGATGGAAAGCCTGCTGGCAACAAGATTTTAAAGGTTGGAGATATTATTCCGCGGGCATTTGAGAGAAAAGGTAATTCGGCAATGTCCTCATTTCGCACCAATCAACAAGGTGAAAAGCAAACCGAAGCTGGAGACGGTTTGGATTTGACTAAAATATCAGAGGAAACTGAGGCTGAGGACCCAGTGACCAGTGATTCAGTTCTGAAGGGTAGGTGTGTTCGGGATGTGGTGACTCCTCTTGCTAAAATGCCATATGCTGATCAACTGGAGCAGAAGAAGAGCTCTTTGACGCGAACTCTTAAAACACTT : ACTCGAAATGCACGTAAAGC</gDNA_template>
            <first_frame> D  D  G  E  K  A  E  D  K  E  E  K  C  N  D  V  M  M  T  E  A  L  D  D  D  E  C  S  S  V  S  G  L  S  K  C  L  V  N  L  P  M  K  W  S  S  D  N  L  R  C  F  L  K  E  H  :  G  V  T  F  K  S  A  K  K  K  K  G  M  A  V  G  F  A  T  F  E  N  A  E  Q  V  K  T  A  V  K  :  E  L  D  G  K  P  A  G  N  K  I  L  K  V  G  D  I  I  P  R  A  F  E  R  K  G  N  S  A  M  S  S  F  R  T  N  Q  Q  G  E  K  Q  T  E  A  G  D  G  L  D  L  T  K  I  S  E  E  T  E  A  E  D  P  V  T  S  D  S  V  L  K  G  R  C  V  R  D  V  V  T  P  L  A  K  M  P  Y  A  D  Q  L  E  Q  K  K  S  S  L  T  R  T  L  K  T  L  :  T  R  N  A  R  K   </first_frame>
            <second_frame>  T  T  G  R  R  Q  R  I  K  K  R  S  A  M  T  L  *  *  L  R  R  *  T  M  T  N  V  L  R  F  L  G  C  Q  N  A  W  *  T  F  P  *  S  G  V  Q  I  I  *  G  V  S  S  K  N  M :   V  L  L  L  N  Q  Q  K  R  R  K  A  W  L  *  D  L  L  L  L  K  M  Q  N  K  *  K  L  L  *  R :   N  W  M  E  S  L  L  A  T  R  F  *  R  L  E  I  L  F  R  G  H  L  R  E  K  V  I  R  Q  C  P  H  F  A  P  I  N  K  V  K  S  K  P  K  L  E  T  V  W  I  *  L  K  Y  Q  R  K  L  R  L  R  T  Q  *  P  V  I  Q  F  *  R  V  G  V  F  G  M  W  *  L  L  L  L  K  C  H  M  L  I  N  W  S  R  R  R  A  L  *  R  E  L  L  K  H  L :   L  E  M  H  V  K  </second_frame>
            <third_frame>   R  R  G  E  G  R  G  *  R  R  E  V  Q  *  R  Y  D  D  *  G  V  R  R  *  R  M  F  F  G  F  W  V  V  K  M  L  G  E  P  S  H  E  V  E  F  R  *  F  K  V  F  P  Q  R  T   : W  C  Y  F  *  I  S  K  K  E  E  R  H  G  C  R  I  C  Y  F  *  K  C  R  T  S  E  N  C  C  E   : G  I  G  W  K  A  C  W  Q  Q  D  F  K  G  W  R  Y  Y  S  A  G  I  *  E  K  R  *  F  G  N  V  L  I  S  H  Q  S  T  R  *  K  A  N  R  S  W  R  R  F  G  F  D  *  N  I  R  G  N  *  G  *  G  P  S  D  Q  *  F  S  S  E  G  *  V  C  S  G  C  G  D  S  S  C  *  N  A  I  C  *  S  T  G  A  E  E  E  L  F  D  A  N  S  *  N  T   : Y  S  K  C  T  *  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79551" stop="79718"/>
                    <exon start="81330" stop="81422"/>
                    <exon start="81510" stop="81824"/>
                    <exon start="81936" stop="81953"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DDGEKAEDKEEKCNDVMMTEALDDDECSSVSGLSKCLVNLPMKWSSDNLRCFLKEHGVTFKSAKKKKGMAVGFATFENAEQVKTAVKELDGKPAGNKILKVGDIIPRAFERKGNSAMSSFRTNQQGEKQTEAGDGLDLTKISEETEAEDPVTSDSVLKGRCVRDVVTPLAKMPYADQLEQKKSSLTRTLKTLTRNARK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="85431" PGL_stop="90567"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85431" e_stop="85532"/>
            <exon e_start="85644" e_stop="85778"/>
            <exon e_start="86875" e_stop="86970"/>
            <exon e_start="88784" e_stop="89218"/>
            <exon e_start="89823" e_stop="89866"/>
            <exon e_start="89981" e_stop="90567"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.752" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="0.995"/>
          <exon-intron don_prob="0.273" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85431" e_stop="85532" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.976">
            <gDNA_intron_boundary i_start="85533" i_stop="85643" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85644" e_stop="85778" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.891">
            <gDNA_intron_boundary i_start="85779" i_stop="86874" i_length="1096"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86875" e_stop="86970" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.752" acc_prob="0.993">
            <gDNA_intron_boundary i_start="86971" i_stop="88783" i_length="1813"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="88784" e_stop="89218" e_length="435"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="89219" i_stop="89822" i_length="604"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="89823" e_stop="89866" e_length="44"/>
          </exon>
          <intron i_serial="5" don_prob="0.273" acc_prob="0.980">
            <gDNA_intron_boundary i_start="89867" i_stop="89980" i_length="114"/>
          </intron>
          <exon e_serial="6" e_score="0.981">
            <gDNA_exon_boundary e_start="89981" e_stop="90567" e_length="587"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85431" stop="85532"/>
              <exon start="85644" stop="85778"/>
              <exon start="86875" stop="86970"/>
              <exon start="88784" stop="89218"/>
              <exon start="89823" stop="89866"/>
              <exon start="89981" stop="90567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323661" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCTATTCTGAACTGCATGCAGATAATGCAGTTGCTGAAGCAAAAATTCACGATTTTATTAATGGACTTAAGTTTTGTATTTCGCCGACGGCCTTCTTTCAG : GTGAACACCCTTGCTGCAGAGAAGTTATACTCTCTTGCAGGGGACTGGGCCAGCTTGGGTCCTGATACCTTACTTTTTGACGTTTGCTGTGGAACTGGAACAATTGGTCTTACTCTGGCAAATCGAGTTGGTATG : GTTGTTGGCATTGAAATGAATGCTTCTGCTGTTTCTGATGCTCAAAGAAATGCTGAAATCAATGGGATAAAGAACTGTAGATTTATTTGTGGAAAG : GCAGAGGATGTCATGGGATCTGTACTGAAAGAATATCTTGCTTCACCTGCGAAAGTAGATGGACTTCTAGATATAGAAGAAAAGAAAAACCAAGAAAATACTACTTCTACAGAGAAGACTGATTCTATAGTTAACGCATCGAAAACAGATGGGGAGTCAAGTACTGGGTCTGAAAATGGTAAAAGCATGTGCATTGATCAAGATACTACACCTACTGAGAATATGTATTCTACGGATAGAGCCGCTGAACCGGAGGAAAAAACAGGCCTTGAGTGTACCAATGGTAAAAGCTTGTCAGAATCTTCAGCAGATGACACTACAGAACCAGCAACCCAACTTAAGAAGTGTTCATCAGATAATTTGACCACTCCAGTGCAACATTTCAAGAATGTTGTTGCAATTGTAGATCCTCCACGTGCTGGACTTCATCCCACT : GTTATCAAACTTTTAAGGACTAACTCACGTCTAAGGAGGCTTGT : TTACATTTCCTGTAATCCTGAAAGCTTGGTTGCAAACGCTATTGAGCTCTGCACACCTTCTCCAGACGAATCGGAAAAGGGGGATAATAGGAACAACAGATTATGGAGGAAGATGAGCAGCGCTACTCTTGCACGACATAGGACCAAATCTATGCCCAATTCAGAGCCTTTTAAACCTGTCAAAGCCATGGCTGTTGATCTTTTTCCACATTCTCCTCATTGTGAACTGGTGATGCTTTTGGAGAGGTAAATTTATCTGTTTCCTTAAGTGATAATCTTGAGTAGCCATATTTATGTGAGGAAATAGAAATGTTCCTTTATATTTGTTCTCTCAATGTGGAAAACAAGGGATGTGCTTTCGACAAACAGTTACTAGATATCTGTTACTGATGGCAGTTTTGAGGCAATCTTTTACTCGTGGAAGATTTCCATAATATTGTTTTGTAACTTTTTCCTTATTTTATTACCAACTTCCAGTTCCCTGATTCCCTGTTCGAAAAGAATACCTCTAATATTAATGACAGATTATGTTTATGACCTCTCATCTAATTTAAGATGCTGTAACAATTTCAAGTGAAAAGTATTCT</gDNA_template>
            <first_frame> S  Y  S  E  L  H  A  D  N  A  V  A  E  A  K  I  H  D  F  I  N  G  L  K  F  C  I  S  P  T  A  F  F  Q  :  V  N  T  L  A  A  E  K  L  Y  S  L  A  G  D  W  A  S  L  G  P  D  T  L  L  F  D  V  C  C  G  T  G  T  I  G  L  T  L  A  N  R  V  G  M  :  V  V  G  I  E  M  N  A  S  A  V  S  D  A  Q  R  N  A  E  I  N  G  I  K  N  C  R  F  I  C  G  K  :  A  E  D  V  M  G  S  V  L  K  E  Y  L  A  S  P  A  K  V  D  G  L  L  D  I  E  E  K  K  N  Q  E  N  T  T  S  T  E  K  T  D  S  I  V  N  A  S  K  T  D  G  E  S  S  T  G  S  E  N  G  K  S  M  C  I  D  Q  D  T  T  P  T  E  N  M  Y  S  T  D  R  A  A  E  P  E  E  K  T  G  L  E  C  T  N  G  K  S  L  S  E  S  S  A  D  D  T  T  E  P  A  T  Q  L  K  K  C  S  S  D  N  L  T  T  P  V  Q  H  F  K  N  V  V  A  I  V  D  P  P  R  A  G  L  H  P  T  :  V  I  K  L  L  R  T  N  S  R  L  R  R  L  V :   Y  I  S  C  N  P  E  S  L  V  A  N  A  I  E  L  C  T  P  S  P  D  E  S  E  K  G  D  N  R  N  N  R  L  W  R  K  M  S  S  A  T  L  A  R  H  R  T  K  S  M  P  N  S  E  P  F  K  P  V  K  A  M  A  V  D  L  F  P  H  S  P  H  C  E  L  V  M  L  L  E  R  *  I  Y  L  F  P  *  V  I  I  L  S  S  H  I  Y  V  R  K  *  K  C  S  F  I  F  V  L  S  M  W  K  T  R  D  V  L  S  T  N  S  Y  *  I  S  V  T  D  G  S  F  E  A  I  F  Y  S  W  K  I  S  I  I  L  F  C  N  F  F  L  I  L  L  P  T  S  S  S  L  I  P  C  S  K  R  I  P  L  I  L  M  T  D  Y  V  Y  D  L  S  S  N  L  R  C  C  N  N  F  K  *  K  V  F  </first_frame>
            <second_frame>  A  I  L  N  C  M  Q  I  M  Q  L  L  K  Q  K  F  T  I  L  L  M  D  L  S  F  V  F  R  R  R  P  S  F  R :   *  T  P  L  L  Q  R  S  Y  T  L  L  Q  G  T  G  P  A  W  V  L  I  P  Y  F  L  T  F  A  V  E  L  E  Q  L  V  L  L  W  Q  I  E  L  V  W :   L  L  A  L  K  *  M  L  L  L  F  L  M  L  K  E  M  L  K  S  M  G  *  R  T  V  D  L  F  V  E  R :   Q  R  M  S  W  D  L  Y  *  K  N  I  L  L  H  L  R  K  *  M  D  F  *  I  *  K  K  R  K  T  K  K  I  L  L  L  Q  R  R  L  I  L  *  L  T  H  R  K  Q  M  G  S  Q  V  L  G  L  K  M  V  K  A  C  A  L  I  K  I  L  H  L  L  R  I  C  I  L  R  I  E  P  L  N  R  R  K  K  Q  A  L  S  V  P  M  V  K  A  C  Q  N  L  Q  Q  M  T  L  Q  N  Q  Q  P  N  L  R  S  V  H  Q  I  I  *  P  L  Q  C  N  I  S  R  M  L  L  Q  L  *  I  L  H  V  L  D  F  I  P  L :   L  S  N  F  *  G  L  T  H  V  *  G  G  L   : F  T  F  P  V  I  L  K  A  W  L  Q  T  L  L  S  S  A  H  L  L  Q  T  N  R  K  R  G  I  I  G  T  T  D  Y  G  G  R  *  A  A  L  L  L  H  D  I  G  P  N  L  C  P  I  Q  S  L  L  N  L  S  K  P  W  L  L  I  F  F  H  I  L  L  I  V  N  W  *  C  F  W  R  G  K  F  I  C  F  L  K  *  *  S  *  V  A  I  F  M  *  G  N  R  N  V  P  L  Y  L  F  S  Q  C  G  K  Q  G  M  C  F  R  Q  T  V  T  R  Y  L  L  L  M  A  V  L  R  Q  S  F  T  R  G  R  F  P  *  Y  C  F  V  T  F  S  L  F  Y  Y  Q  L  P  V  P  *  F  P  V  R  K  E  Y  L  *  Y  *  *  Q  I  M  F  M  T  S  H  L  I  *  D  A  V  T  I  S  S  E  K  Y  S </second_frame>
            <third_frame>   L  F  *  T  A  C  R  *  C  S  C  *  S  K  N  S  R  F  Y  *  W  T  *  V  L  Y  F  A  D  G  L  L  S   : G  E  H  P  C  C  R  E  V  I  L  S  C  R  G  L  G  Q  L  G  S  *  Y  L  T  F  *  R  L  L  W  N  W  N  N  W  S  Y  S  G  K  S  S  W  Y   : G  C  W  H  *  N  E  C  F  C  C  F  *  C  S  K  K  C  *  N  Q  W  D  K  E  L  *  I  Y  L  W  K   : G  R  G  C  H  G  I  C  T  E  R  I  S  C  F  T  C  E  S  R  W  T  S  R  Y  R  R  K  E  K  P  R  K  Y  Y  F  Y  R  E  D  *  F  Y  S  *  R  I  E  N  R  W  G  V  K  Y  W  V  *  K  W  *  K  H  V  H  *  S  R  Y  Y  T  Y  *  E  Y  V  F  Y  G  *  S  R  *  T  G  G  K  N  R  P  *  V  Y  Q  W  *  K  L  V  R  I  F  S  R  *  H  Y  R  T  S  N  P  T  *  E  V  F  I  R  *  F  D  H  S  S  A  T  F  Q  E  C  C  C  N  C  R  S  S  T  C  W  T  S  S  H   : C  Y  Q  T  F  K  D  *  L  T  S  K  E  A  C  :  L  H  F  L  *  S  *  K  L  G  C  K  R  Y  *  A  L  H  T  F  S  R  R  I  G  K  G  G  *  *  E  Q  Q  I  M  E  E  D  E  Q  R  Y  S  C  T  T  *  D  Q  I  Y  A  Q  F  R  A  F  *  T  C  Q  S  H  G  C  *  S  F  S  T  F  S  S  L  *  T  G  D  A  F  G  E  V  N  L  S  V  S  L  S  D  N  L  E  *  P  Y  L  C  E  E  I  E  M  F  L  Y  I  C  S  L  N  V  E  N  K  G  C  A  F  D  K  Q  L  L  D  I  C  Y  *  W  Q  F  *  G  N  L  L  L  V  E  D  F  H  N  I  V  L  *  L  F  P  Y  F  I  T  N  F  Q  F  P  D  S  L  F  E  K  N  T  S  N  I  N  D  R  L  C  L  *  P  L  I  *  F  K  M  L  *  Q  F  Q  V  K  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85431" stop="85532"/>
                    <exon start="85644" stop="85778"/>
                    <exon start="86875" stop="86970"/>
                    <exon start="88784" stop="89218"/>
                    <exon start="89823" stop="89866"/>
                    <exon start="89981" stop="90230"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1059</number_coding_nucleotides>
                  <number_encoded_amino_acids>353</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYSELHADNAVAEAKIHDFINGLKFCISPTAFFQVNTLAAEKLYSLAGDWASLGPDTLLFDVCCGTGTIGLTLANRVGMVVGIEMNASAVSDAQRNAEINGIKNCRFICGKAEDVMGSVLKEYLASPAKVDGLLDIEEKKNQENTTSTEKTDSIVNASKTDGESSTGSENGKSMCIDQDTTPTENMYSTDRAAEPEEKTGLECTNGKSLSESSADDTTEPATQLKKCSSDNLTTPVQHFKNVVAIVDPPRAGLHPTVIKLLRTNSRLRRLVYISCNPESLVANAIELCTPSPDESEKGDNRNNRLWRKMSSATLARHRTKSMPNSEPFKPVKAMAVDLFPHSPHCELVMLLER*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90357" stop="90557"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISVTDGSFEAIFYSWKISIILFCNFFLILLPTSSSLIPCSKRIPLILMTDYVYDLSSNLRCCNNFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="97725" PGL_stop="99348"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97725" e_stop="97998"/>
            <exon e_start="98896" e_stop="99348"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="97725" e_stop="97998" e_length="274"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="97999" i_stop="98895" i_length="897"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98896" e_stop="99348" e_length="453"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97725" stop="97998"/>
              <exon start="98896" stop="99348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327565" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTATTATACAAAGTAACAAACATTCTGGTTCTCTATTTTTTTTTTTAAAAAAAAACTCCCATTGCACCTTTTTTTTTTAAAAAAAATCTTTTGTTATTTTCACTCTTTTCAAGATTTTTTCAAATTTTAAGTAAACAAAGTGTATTATTAGTAGATTGTGGAATATTTGGATCATGAGTGAAGAACATAAGGAGAAAATCATGGCTGAGGTTGTTGATAATGATGAAAAAATTGGTGTTTGTGAAAATGATTTTGTCATTTCAACACCTAAG : ATCGAGAGGTCATCCACGATTACTGAAGAAACAACACATGCTAAACATTGGAGGAAACCAAACCTATCCTTAGACATACCTTCAAGAACGTTAGACGCGTCTCCTCAAGAGTTAGTTCAGATTAAAAGACCATTCACGCCTACACCGAAGAGGGTGAATTTCCTTTTGACACCCAGTACTTGTGATTCAAGAATAACTACTTCATCACCAGGTCCCTCCCCGTGTCGTGGAAAATCAACCATTAGAAATCTTTTCCCTAAACTGAGCTTGAAATCACGTATGAATTCGGATACAGAGAAGGTAACTGTCCCGGATACAGGTCCAGCTGCTGCAGTTGTGCCACAACAAGAGAAGGTATCCATTTCAAGGTCATGGTCACTTACTAAAATGTTCACGCCTCGCATCAAGAGGACCTCGTCTTTGCCCGTTACACCAATTTCACATTCAAATCCT</gDNA_template>
            <first_frame> F  Y  Y  T  K  *  Q  T  F  W  F  S  I  F  F  F  K  K  K  L  P  L  H  L  F  F  L  K  K  I  F  C  Y  F  H  S  F  Q  D  F  F  K  F  *  V  N  K  V  Y  Y  *  *  I  V  E  Y  L  D  H  E  *  R  T  *  G  E  N  H  G  *  G  C  *  *  *  *  K  N  W  C  L  *  K  *  F  C  H  F  N  T  *   : D  R  E  V  I  H  D  Y  *  R  N  N  T  C  *  T  L  E  E  T  K  P  I  L  R  H  T  F  K  N  V  R  R  V  S  S  R  V  S  S  D  *  K  T  I  H  A  Y  T  E  E  G  E  F  P  F  D  T  Q  Y  L  *  F  K  N  N  Y  F  I  T  R  S  L  P  V  S  W  K  I  N  H  *  K  S  F  P  *  T  E  L  E  I  T  Y  E  F  G  Y  R  E  G  N  C  P  G  Y  R  S  S  C  C  S  C  A  T  T  R  E  G  I  H  F  K  V  M  V  T  Y  *  N  V  H  A  S  H  Q  E  D  L  V  F  A  R  Y  T  N  F  T  F  K  S  </first_frame>
            <second_frame>  F  I  I  Q  S  N  K  H  S  G  S  L  F  F  F  L  K  K  N  S  H  C  T  F  F  F  *  K  K  S  F  V  I  F  T  L  F  K  I  F  S  N  F  K  *  T  K  C  I  I  S  R  L  W  N  I  W  I  M  S  E  E  H  K  E  K  I  M  A  E  V  V  D  N  D  E  K  I  G  V  C  E  N  D  F  V  I  S  T  P  K  :  I  E  R  S  S  T  I  T  E  E  T  T  H  A  K  H  W  R  K  P  N  L  S  L  D  I  P  S  R  T  L  D  A  S  P  Q  E  L  V  Q  I  K  R  P  F  T  P  T  P  K  R  V  N  F  L  L  T  P  S  T  C  D  S  R  I  T  T  S  S  P  G  P  S  P  C  R  G  K  S  T  I  R  N  L  F  P  K  L  S  L  K  S  R  M  N  S  D  T  E  K  V  T  V  P  D  T  G  P  A  A  A  V  V  P  Q  Q  E  K  V  S  I  S  R  S  W  S  L  T  K  M  F  T  P  R  I  K  R  T  S  S  L  P  V  T  P  I  S  H  S  N  P </second_frame>
            <third_frame>   L  L  Y  K  V  T  N  I  L  V  L  Y  F  F  F  *  K  K  T  P  I  A  P  F  F  F  K  K  N  L  L  L  F  S  L  F  S  R  F  F  Q  I  L  S  K  Q  S  V  L  L  V  D  C  G  I  F  G  S  *  V  K  N  I  R  R  K  S  W  L  R  L  L  I  M  M  K  K  L  V  F  V  K  M  I  L  S  F  Q  H  L  R :   S  R  G  H  P  R  L  L  K  K  Q  H  M  L  N  I  G  G  N  Q  T  Y  P  *  T  Y  L  Q  E  R  *  T  R  L  L  K  S  *  F  R  L  K  D  H  S  R  L  H  R  R  G  *  I  S  F  *  H  P  V  L  V  I  Q  E  *  L  L  H  H  Q  V  P  P  R  V  V  E  N  Q  P  L  E  I  F  S  L  N  *  A  *  N  H  V  *  I  R  I  Q  R  R  *  L  S  R  I  Q  V  Q  L  L  Q  L  C  H  N  K  R  R  Y  P  F  Q  G  H  G  H  L  L  K  C  S  R  L  A  S  R  G  P  R  L  C  P  L  H  Q  F  H  I  Q  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97861" stop="97998"/>
                    <exon start="98896" stop="99348"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKCIISRLWNIWIMSEEHKEKIMAEVVDNDEKIGVCENDFVISTPKIERSSTITEETTHAKHWRKPNLSLDIPSRTLDASPQELVQIKRPFTPTPKRVNFLLTPSTCDSRITTSSPGPSPCRGKSTIRNLFPKLSLKSRMNSDTEKVTVPDTGPAAAVVPQQEKVSISRSWSLTKMFTPRIKRTSSLPVTPISHSNP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="101692" PGL_stop="102585"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101692" e_stop="102112"/>
            <exon e_start="102567" e_stop="102585"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.842"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101692" e_stop="102112" e_length="421"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="102113" i_stop="102566" i_length="454"/>
          </intron>
          <exon e_serial="2" e_score="0.842">
            <gDNA_exon_boundary e_start="102567" e_stop="102585" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101692" stop="102112"/>
              <exon start="102567" stop="102585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332799" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTCTCGTATAGGTCCTCAAAATCATCAACACGATATAGAAAATCCTGAGACGTTTAGTTGGAGCTAGATTGTGTCTTATGTTACTGTTACAGCCAAAAAAAGAGTTGAGTGATTTGTTCATACAGAGTTGTGGAGATTGATGTTTAGTACAAGTTAGAAACTTATTGTGTTCTACTCTAAGTTGTGCGGACTCTTCACTTTCCATGCCACACACCCGTGTTGGATTCTCCAAAAATACACTATTTTTTGGAGTATCTGACGCGCATCAATAGACATTTTTGAAGAGTCCGACCAACATAGGTTCTACTATACGAAAAACAGAAATAGTTGCTGTTGTTGTTTGTATTGCTGAAAGAATATGTAAAAAGTGAAATGCATATATAAGTAGAAGAGAGTATACAAAGGTGTTTTATGAAAAAA : GTAAAAAAAGAAAAACAAA</gDNA_template>
            <first_frame> R  L  V  *  V  L  K  I  I  N  T  I  *  K  I  L  R  R  L  V  G  A  R  L  C  L  M  L  L  L  Q  P  K  K  E  L  S  D  L  F  I  Q  S  C  G  D  *  C  L  V  Q  V  R  N  L  L  C  S  T  L  S  C  A  D  S  S  L  S  M  P  H  T  R  V  G  F  S  K  N  T  L  F  F  G  V  S  D  A  H  Q  *  T  F  L  K  S  P  T  N  I  G  S  T  I  R  K  T  E  I  V  A  V  V  V  C  I  A  E  R  I  C  K  K  *  N  A  Y  I  S  R  R  E  Y  T  K  V  F  Y  E  K   : S  K  K  R  K  T   </first_frame>
            <second_frame>  V  S  Y  R  S  S  K  S  S  T  R  Y  R  K  S  *  D  V  *  L  E  L  D  C  V  L  C  Y  C  Y  S  Q  K  K  S  *  V  I  C  S  Y  R  V  V  E  I  D  V  *  Y  K  L  E  T  Y  C  V  L  L  *  V  V  R  T  L  H  F  P  C  H  T  P  V  L  D  S  P  K  I  H  Y  F  L  E  Y  L  T  R  I  N  R  H  F  *  R  V  R  P  T  *  V  L  L  Y  E  K  Q  K  *  L  L  L  L  F  V  L  L  K  E  Y  V  K  S  E  M  H  I  *  V  E  E  S  I  Q  R  C  F  M  K  K  :  V  K  K  E  K  Q  </second_frame>
            <third_frame>   S  R  I  G  P  Q  N  H  Q  H  D  I  E  N  P  E  T  F  S  W  S  *  I  V  S  Y  V  T  V  T  A  K  K  R  V  E  *  F  V  H  T  E  L  W  R  L  M  F  S  T  S  *  K  L  I  V  F  Y  S  K  L  C  G  L  F  T  F  H  A  T  H  P  C  W  I  L  Q  K  Y  T  I  F  W  S  I  *  R  A  S  I  D  I  F  E  E  S  D  Q  H  R  F  Y  Y  T  K  N  R  N  S  C  C  C  C  L  Y  C  *  K  N  M  *  K  V  K  C  I  Y  K  *  K  R  V  Y  K  G  V  L  *  K  K :   *  K  K  K  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0161D01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="103106" PGL_stop="107715"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103106" e_stop="103195"/>
            <exon e_start="103808" e_stop="104045"/>
            <exon e_start="105959" e_stop="106024"/>
            <exon e_start="106266" e_stop="106557"/>
            <exon e_start="107255" e_stop="107715"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.720" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.951" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103106" e_stop="103195" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103196" i_stop="103807" i_length="612"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103808" e_stop="104045" e_length="238"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.720">
            <gDNA_intron_boundary i_start="104046" i_stop="105958" i_length="1913"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105959" e_stop="106024" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.944" acc_prob="0.922">
            <gDNA_intron_boundary i_start="106025" i_stop="106265" i_length="241"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106266" e_stop="106557" e_length="292"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.951">
            <gDNA_intron_boundary i_start="106558" i_stop="107254" i_length="697"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="107255" e_stop="107715" e_length="461"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103106" stop="103195"/>
              <exon start="103808" stop="104045"/>
              <exon start="105959" stop="106024"/>
              <exon start="106266" stop="106557"/>
              <exon start="107255" stop="107715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321213" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCAGCAGACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCCTTCTCGAGGTGCTGTTTCATATTCACTCATC : GGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTG : ATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAG : GTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTAAGACCTGGAAG : TGCAAAGGAAGAGACCATTGCTATCCTTGAAAGACACTCACTACTGGAAGATGGAACTGGAGATTAGCAAGCCGCTGCTCAAGTTGAAGCTGTTCAGCCAGACGAGCCTCGTGCCTGAGTTTGTAAAGTACAACTCATAAAAACTTGATTCGATGCAGTTGTGCTTCCTTTGTGTCAATGGAAAGGTTTCGTCCTTCTATTTGAAGTCGAGTAGAGGAGAGGAACACACCTTTGTTCATGCATTGTTGAGTTTGTCAATGGAAGTGTTCCAGTCAGTTACTAAATAGGATTCAAAGTGTGTTTTATGATTTCCCATTTGAGAGCCATTTACAATGTAATGAATCATGTTGTAACACGAAAATATCATATTTTTTTAATTTTTTGACTTCTGACATTCATTAGTGTCTTGCTTATGAATAATGAATGGAAAAAATTCTATTTATTTCTCAAAAATGTCAAAT</gDNA_template>
            <first_frame> C  S  R  P  T  K  I  A  Q  I  L  P  I  F  N  S  F  I  Y  P  S  R  G  A  V  S  Y  S  L  I  :  G  W  K  K  L  D  F  *  T  C  G  Q  E  V  G  R  V  *  V  Q  L  V  *  R  K  W  V  G  V  W  R  I  L  M  G  M  *  R  L  R  R  L  L  Y  L  L  Q  Q  K  I  M  V  K  R  Q  L  K  L  S  G  L  G  K  S  *  L  F  P  L  T  H  Y  M  A  L  L  V  M  L   : D  H  L  P  L  G  L  L  D  C  L  L  P  G  P  V  T  L  V  L  R  R   : G  E  S  S  I  L  E  K  S  L  N  P  G  L  E  S  I  G  V  R  V  P  D  C  N  F  I  R  V  I  A  R  G  S  R  S  A  L  A  L  T  S  A  N  L  S  G  Q  P  S  S  I  D  I  K  D  F  E  N  L  W  E  H  C  A  Y  V  Y  D  G  G  I  L  P  A  G  R  A  G  S  T  V  V  D  L  T  K  L  G  K  Y  K  I  L  R  P  G  S :   A  K  E  E  T  I  A  I  L  E  R  H  S  L  L  E  D  G  T  G  D  *  Q  A  A  A  Q  V  E  A  V  Q  P  D  E  P  R  A  *  V  C  K  V  Q  L  I  K  T  *  F  D  A  V  V  L  P  L  C  Q  W  K  G  F  V  L  L  F  E  V  E  *  R  R  G  T  H  L  C  S  C  I  V  E  F  V  N  G  S  V  P  V  S  Y  *  I  G  F  K  V  C  F  M  I  S  H  L  R  A  I  Y  N  V  M  N  H  V  V  T  R  K  Y  H  I  F  L  I  F  *  L  L  T  F  I  S  V  L  L  M  N  N  E  W  K  K  F  Y  L  F  L  K  N  V  K  </first_frame>
            <second_frame>  A  A  D  P  Q  K  *  P  K  F  C  L  F  S  T  L  S  Y  T  L  L  E  V  L  F  H  I  H  S  S :   G  G  K  N  W  I  F  E  L  V  G  K  K  *  E  G  F  K  C  S  *  C  E  E  N  G  L  E  F  G  E  S  *  W  G  C  R  D  *  E  G  Y  C  I  S  C  S  R  R  L  W  S  R  G  N  *  S  Y  Q  G  W  E  S  H  S  C  S  H  *  H  T  I  W  L  C  L  *  C  L  :  I  I  C  L  L  A  C  L  T  A  C  F  L  D  P  *  L  W  S  *  G  E  :  V  S  Q  V  S  L  R  S  H  *  T  L  D  *  R  A  *  G  F  E  C  Q  T  V  T  S  S  G  *  L  L  V  V  L  E  V  P  L  H  L  L  V  Q  I  S  A  D  N  P  V  A  *  T  S  K  I  L  R  T  S  G  S  T  V  H  M  S  M  M  A  E  F  F  Q  L  G  E  L  D  R  Q  W  W  I  L  L  S  W  G  S  T  R  F  *  D  L  E   : V  Q  R  K  R  P  L  L  S  L  K  D  T  H  Y  W  K  M  E  L  E  I  S  K  P  L  L  K  L  K  L  F  S  Q  T  S  L  V  P  E  F  V  K  Y  N  S  *  K  L  D  S  M  Q  L  C  F  L  C  V  N  G  K  V  S  S  F  Y  L  K  S  S  R  G  E  E  H  T  F  V  H  A  L  L  S  L  S  M  E  V  F  Q  S  V  T  K  *  D  S  K  C  V  L  *  F  P  I  *  E  P  F  T  M  *  *  I  M  L  *  H  E  N  I  I  F  F  *  F  F  D  F  *  H  S  L  V  S  C  L  *  I  M  N  G  K  N  S  I  Y  F  S  K  M  S  N </second_frame>
            <third_frame>   Q  Q  T  H  K  N  S  P  N  S  A  Y  F  Q  L  F  H  I  P  F  S  R  C  C  F  I  F  T  H   : R  V  E  K  I  G  F  L  N  L  W  A  R  S  R  K  G  L  S  A  V  S  V  K  K  M  G  W  S  L  E  N  P  D  G  D  V  E  T  K  K  A  T  V  S  P  A  A  E  D  Y  G  Q  E  A  I  E  A  I  R  A  G  K  V  I  A  V  P  T  D  T  L  Y  G  F  A  C  D  A  * :   S  S  A  S  W  L  A  *  L  P  A  S  W  T  R  D  F  G  L  K  A  R :   *  V  K  Y  P  *  E  V  I  K  P  W  I  R  E  H  R  G  S  S  A  R  L  *  L  H  Q  G  D  C  S  W  F  *  K  C  P  C  T  Y  *  C  K  S  Q  R  T  T  Q  *  H  R  H  Q  R  F  *  E  P  L  G  A  L  C  I  C  L  *  W  R  N  S  S  S  W  A  S  W  I  D  S  G  G  S  Y  *  A  G  E  V  Q  D  S  K  T  W  K  :  C  K  G  R  D  H  C  Y  P  *  K  T  L  T  T  G  R  W  N  W  R  L  A  S  R  C  S  S  *  S  C  S  A  R  R  A  S  C  L  S  L  *  S  T  T  H  K  N  L  I  R  C  S  C  A  S  F  V  S  M  E  R  F  R  P  S  I  *  S  R  V  E  E  R  N  T  P  L  F  M  H  C  *  V  C  Q  W  K  C  S  S  Q  L  L  N  R  I  Q  S  V  F  Y  D  F  P  F  E  S  H  L  Q  C  N  E  S  C  C  N  T  K  I  S  Y  F  F  N  F  L  T  S  D  I  H  *  C  L  A  Y  E  *  *  M  E  K  I  L  F  I  S  Q  K  C  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104003" stop="104045"/>
                    <exon start="105959" stop="106024"/>
                    <exon start="106266" stop="106557"/>
                    <exon start="107255" stop="107321"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFPLTHYMALLVMLDHLPLGLLDCLLPGPVTLVLRRGESSILEKSLNPGLESIGVRVPDCNFIRVIARGSRSALALTSANLSGQPSSIDIKDFENLWEHCAYVYDGGILPAGRAGSTVVDLTKLGKYKILRPGSAKEETIAILERHSLLEDGTGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="103808" e_stop="104045"/>
            <exon e_start="105849" e_stop="106024"/>
            <exon e_start="106266" e_stop="106557"/>
            <exon e_start="107255" e_stop="107715"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.951" e_score="0.990"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103808" e_stop="104045" e_length="238"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.981">
            <gDNA_intron_boundary i_start="104046" i_stop="105848" i_length="1803"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105849" e_stop="106024" e_length="176"/>
          </exon>
          <intron i_serial="2" don_prob="0.944" acc_prob="0.922">
            <gDNA_intron_boundary i_start="106025" i_stop="106265" i_length="241"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="106266" e_stop="106557" e_length="292"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.951">
            <gDNA_intron_boundary i_start="106558" i_stop="107254" i_length="697"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="107255" e_stop="107715" e_length="461"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103808" stop="104045"/>
              <exon start="105849" stop="106024"/>
              <exon start="106266" stop="106557"/>
              <exon start="107255" stop="107715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321214" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTG : TTCTGCTGAGGCAGTGAATCGTATTTATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATGACATAAAACATTATGCTGTGACAGATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAG : GTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTAAGACCTGGAAG : TGCAAAGGAAGAGACCATTGCTATCCTTGAAAGACACTCACTACTGGAAGATGGAACTGGAGATTAGCAAGCCGCTGCTCAAGTTGAAGCTGTTCAGCCAGACGAGCCTCGTGCCTGAGTTTGTAAAGTACAACTCATAAAAACTTGATTCGATGCAGTTGTGCTTCCTTTGTGTCAATGGAAAGGTTTCGTCCTTCTATTTGAAGTCGAGTAGAGGAGAGGAACACACCTTTGTTCATGCATTGTTGAGTTTGTCAATGGAAGTGTTCCAGTCAGTTACTAAATAGGATTCAAAGTGTGTTTTATGATTTCCCATTTGAGAGCCATTTACAATGTAATGAATCATGTTGTAACACGAAAATATCATATTTTTTTAATTTTTTGACTTCTGACATTCATTAGTGTCTTGCTTATGAATAATGAATGGAAAAAATTCTATTTATTTCTCAAAAATGTCAAAT</gDNA_template>
            <first_frame> G  W  K  K  L  D  F  *  T  C  G  Q  E  V  G  R  V  *  V  Q  L  V  *  R  K  W  V  G  V  W  R  I  L  M  G  M  *  R  L  R  R  L  L  Y  L  L  Q  Q  K  I  M  V  K  R  Q  L  K  L  S  G  L  G  K  S  *  L  F  P  L  T  H  Y  M  A  L  L  V  M  L   : V  L  L  R  Q  *  I  V  F  M  R  S  K  D  V  S  I  Q  V  L  W  L  F  V  L  A  M  F  M  T  *  N  I  M  L  *  Q  I  I  C  L  L  A  C  L  T  A  C  F  L  D  P  *  L  W  S  *  G  E  :  V  S  Q  V  S  L  R  S  H  *  T  L  D  *  R  A  *  G  F  E  C  Q  T  V  T  S  S  G  *  L  L  V  V  L  E  V  P  L  H  L  L  V  Q  I  S  A  D  N  P  V  A  *  T  S  K  I  L  R  T  S  G  S  T  V  H  M  S  M  M  A  E  F  F  Q  L  G  E  L  D  R  Q  W  W  I  L  L  S  W  G  S  T  R  F  *  D  L  E   : V  Q  R  K  R  P  L  L  S  L  K  D  T  H  Y  W  K  M  E  L  E  I  S  K  P  L  L  K  L  K  L  F  S  Q  T  S  L  V  P  E  F  V  K  Y  N  S  *  K  L  D  S  M  Q  L  C  F  L  C  V  N  G  K  V  S  S  F  Y  L  K  S  S  R  G  E  E  H  T  F  V  H  A  L  L  S  L  S  M  E  V  F  Q  S  V  T  K  *  D  S  K  C  V  L  *  F  P  I  *  E  P  F  T  M  *  *  I  M  L  *  H  E  N  I  I  F  F  *  F  F  D  F  *  H  S  L  V  S  C  L  *  I  M  N  G  K  N  S  I  Y  F  S  K  M  S  N </first_frame>
            <second_frame>  G  G  K  N  W  I  F  E  L  V  G  K  K  *  E  G  F  K  C  S  *  C  E  E  N  G  L  E  F  G  E  S  *  W  G  C  R  D  *  E  G  Y  C  I  S  C  S  R  R  L  W  S  R  G  N  *  S  Y  Q  G  W  E  S  H  S  C  S  H  *  H  T  I  W  L  C  L  *  C  L  :  F  C  *  G  S  E  S  Y  L  *  D  Q  R  T  *  A  Y  K  S  S  G  Y  L  C  W  R  C  S  *  H  K  T  L  C  C  D  R  S  S  A  S  W  L  A  *  L  P  A  S  W  T  R  D  F  G  L  K  A  R :   *  V  K  Y  P  *  E  V  I  K  P  W  I  R  E  H  R  G  S  S  A  R  L  *  L  H  Q  G  D  C  S  W  F  *  K  C  P  C  T  Y  *  C  K  S  Q  R  T  T  Q  *  H  R  H  Q  R  F  *  E  P  L  G  A  L  C  I  C  L  *  W  R  N  S  S  S  W  A  S  W  I  D  S  G  G  S  Y  *  A  G  E  V  Q  D  S  K  T  W  K  :  C  K  G  R  D  H  C  Y  P  *  K  T  L  T  T  G  R  W  N  W  R  L  A  S  R  C  S  S  *  S  C  S  A  R  R  A  S  C  L  S  L  *  S  T  T  H  K  N  L  I  R  C  S  C  A  S  F  V  S  M  E  R  F  R  P  S  I  *  S  R  V  E  E  R  N  T  P  L  F  M  H  C  *  V  C  Q  W  K  C  S  S  Q  L  L  N  R  I  Q  S  V  F  Y  D  F  P  F  E  S  H  L  Q  C  N  E  S  C  C  N  T  K  I  S  Y  F  F  N  F  L  T  S  D  I  H  *  C  L  A  Y  E  *  *  M  E  K  I  L  F  I  S  Q  K  C  Q   </second_frame>
            <third_frame>   V  E  K  I  G  F  L  N  L  W  A  R  S  R  K  G  L  S  A  V  S  V  K  K  M  G  W  S  L  E  N  P  D  G  D  V  E  T  K  K  A  T  V  S  P  A  A  E  D  Y  G  Q  E  A  I  E  A  I  R  A  G  K  V  I  A  V  P  T  D  T  L  Y  G  F  A  C  D  A  C :   S  A  E  A  V  N  R  I  Y  E  I  K  G  R  K  H  T  S  P  L  A  I  C  V  G  D  V  H  D  I  K  H  Y  A  V  T  D  H  L  P  L  G  L  L  D  C  L  L  P  G  P  V  T  L  V  L  R  R   : G  E  S  S  I  L  E  K  S  L  N  P  G  L  E  S  I  G  V  R  V  P  D  C  N  F  I  R  V  I  A  R  G  S  R  S  A  L  A  L  T  S  A  N  L  S  G  Q  P  S  S  I  D  I  K  D  F  E  N  L  W  E  H  C  A  Y  V  Y  D  G  G  I  L  P  A  G  R  A  G  S  T  V  V  D  L  T  K  L  G  K  Y  K  I  L  R  P  G  S :   A  K  E  E  T  I  A  I  L  E  R  H  S  L  L  E  D  G  T  G  D  *  Q  A  A  A  Q  V  E  A  V  Q  P  D  E  P  R  A  *  V  C  K  V  Q  L  I  K  T  *  F  D  A  V  V  L  P  L  C  Q  W  K  G  F  V  L  L  F  E  V  E  *  R  R  G  T  H  L  C  S  C  I  V  E  F  V  N  G  S  V  P  V  S  Y  *  I  G  F  K  V  C  F  M  I  S  H  L  R  A  I  Y  N  V  M  N  H  V  V  T  R  K  Y  H  I  F  L  I  F  *  L  L  T  F  I  S  V  L  L  M  N  N  E  W  K  K  F  Y  L  F  L  K  N  V  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103810" stop="104045"/>
                    <exon start="105849" stop="106024"/>
                    <exon start="106266" stop="106557"/>
                    <exon start="107255" stop="107321"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEKIGFLNLWARSRKGLSAVSVKKMGWSLENPDGDVETKKATVSPAAEDYGQEAIEAIRAGKVIAVPTDTLYGFACDACSAEAVNRIYEIKGRKHTSPLAICVGDVHDIKHYAVTDHLPLGLLDCLLPGPVTLVLRRGESSILEKSLNPGLESIGVRVPDCNFIRVIARGSRSALALTSANLSGQPSSIDIKDFENLWEHCAYVYDGGILPAGRAGSTVVDLTKLGKYKILRPGSAKEETIAILERHSLLEDGTGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 45 chains have been computed
$ 
$ memory statistics:
$ 248992 bytes spliced alignments in total
$ 18 spliced alignments have been stored
$ 13832 bytes was the average size of a spliced alignment
$ 23008 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1643 bytes was the average size of a predicted gene location
$ 25 megabytes was the average size of the backtrace matrix
$ 47 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 21:03:59
-->
