<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 18:04:38"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7923" ref_strand="+" ref_description="SGN-M7923 C2_At3g44600 [cosii_markers]">
      <seq>tcactgagaaagcaaatttctgcagcaaatcggaagtgagattggaaatccggcgacggcgacgggagagatggaggaagcagatcagaatgagaacggaaatccggcggcggcggtggtggaggaaaccgaaacggttattggaccgggtccagctcctcgtgctcgtgctaaacgtcctcttcaatttgagcaagcttatctcgattcacttccgtctgctaacttgtatgaaaaaagttacatgcaccgagacgtggttactcatgttgctgtttcagcagcagattttttcattagtgggagtactgatggtcacctgaaattttggaagaaaaagcctactggtatcgagtttgcaaaacattttagatctcatcttggaccaattgaaggccttgcagttagcattgatggtatgctttgctgtacaatttcaagtgataagtctctgaaaatatatgacgtagtgaattatgacatgatgtccatgattcgtcttcccttcatacctggatgtgttgaatgggtatataaacaaagggatgtcaaggctaaacttgccgttagtgatcgtaactcctcattggggcatatatatgatgcaagagctggaacaaatgatcctataatatctaaagaggtacaggtgtgccccatcaaagtcatgaaatacaatcatgtctttgatactgtgatatcagcagatgacaaagggatcattgagtactggagtcctgccacacttaagttcccagagaatctggtgaattttagattgaagagtgatactgatctctttgaaattgtgaaatgcaaaactgctgtttcttctatagaggtaagccctgatggtaaacagttctcggtaacttcaccagatcgcaggattcgtatattttggttcaagacaggtaaactaagacgtgtgtatgatgaatctcttgaggtggcacaagatctccagaggagtgatgttcctttataccgacttgaagctattgactttggacgaagaatggctgtggaaaaagaaattgagaaaacagaatgtgtaccacaacctaatgctgtttttgatgaaagttccaatttcattatatatgcaactctcctaggaattaaaattataaatctacacactaacaaggtatctcgtatcctggggaaggtggagagcaatgatagatttttgagaattgctttgtatcaaggtgatagaagtagtaaaaaagtaagaaaaatccctgctgcggcagcaaatgcaaatgaaagcaaggagcccttgatagatcccaatctactttgctgtgctttcaagaaacatagaatctatttgttcagtcagagagaacctgaggaacctgatgatcctaccaagggaagagatgtcttcaatgaaaagccacctcctgatgaacttttggccgtatctgacattgggaagtccgttactacatcccttccagataatgtgatcatgcataccagtatgggtgacattcatatgaagctataccctgaagagtgtccaaaaacagtggagaactttacaacacactgcaggaatggatactatgataatttgatatttcatcgggtcatcagaggctttatggttcagacaggagatccattaggagatggcacgggtggccaatctatttggggaagggagtttgaagatgagttccataaaagtctgcgacatgatagacccttcactgtctcgatggctaatgctgggccaaacacaaatggctctcaattcttcataacaactgttgccactccatggttggacaataagcacacagtttttggcagagtggtgaaaggaatggatgttgtacagtcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="29782" stop="22295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29482" g_stop="29255" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29254" i_stop="27882" i_length="1373">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27881" g_stop="27796" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="314" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27795" i_stop="27730" i_length="66">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27729" g_stop="27641" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="403" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27640" i_stop="27539" i_length="102">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27538" g_stop="27299" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="643" r_length="240" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27298" i_stop="27161" i_length="138">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.777" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27160" g_stop="27039" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="765" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27038" i_stop="26541" i_length="498">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26540" g_stop="26465" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="841" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26464" i_stop="26275" i_length="190">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26274" g_stop="26167" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="842" r_stop="949" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="26166" i_stop="26053" i_length="114">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="26052" g_stop="25876" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="950" r_stop="1126" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="25875" i_stop="25738" i_length="138">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="25737" g_stop="25520" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1127" r_stop="1344" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="25519" i_stop="25049" i_length="471">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="25048" g_stop="24916" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1345" r_stop="1477" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="24915" i_stop="24032" i_length="884">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="24031" g_stop="23808" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1478" r_stop="1701" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="23807" i_stop="22754" i_length="1054">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="22753" g_stop="22600" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1702" r_stop="1855" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="22599" i_stop="22345" i_length="255">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="22344" g_stop="22340" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1856" r_stop="1860" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-M7923" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1860</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29482" e_stop="29255"/>
          <exon e_start="27881" e_stop="27796"/>
          <exon e_start="27729" e_stop="27641"/>
          <exon e_start="27538" e_stop="27299"/>
          <exon e_start="27160" e_stop="27039"/>
          <exon e_start="26540" e_stop="26465"/>
          <exon e_start="26274" e_stop="26167"/>
          <exon e_start="26052" e_stop="25876"/>
          <exon e_start="25737" e_stop="25520"/>
          <exon e_start="25048" e_stop="24916"/>
          <exon e_start="24031" e_stop="23808"/>
          <exon e_start="22753" e_stop="22600"/>
          <exon e_start="22344" e_stop="22340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTAGAAAGCAAATTTCTGCAGCAAATCGGAAGTGAGATTGGAAATCCGGCGACGGCGACGGGAGAGATGGAGGAAGCAGATCAGAATGAGAACGGAAATCCGGCGGCGGCGGTGGTGGAGGAAACCGAAACGGTTATTGGACCGGGTCCAGCTCCTCGTGCTCGTGCTAAACGTCCTCTTCAATTTGAGCAAGCTTATCTCGATTCACTTCCGTCTGCTAACTTGTAAGTAGTAATACTATTATGTATGGATATGTTTAACTTCACAGTGTTTGTTGTTTTTAAAATGCTTTTAGGGTTTATTATATTTTATAAGAATAGTGCTAATACTACGGGAATGAAGGATGAGGATAGAGACTGGAAATGAAAGAAAATCATACTAAAGCTATACTATATCTAAGTAAATGAATGAAAAAATAGGGAAAAAGTGGATTCACAAGCAATCCAAGGCATATTATACATTGAACCTCAAATGAAATCACAAAAGATCAAATGTAAAATTGTAGAAGTTCACGAAATCAACAAAGGAATATGATAGCTATACTTTGAATTTTGACATTCGAGATTTGAAACCAAAATCATAATGTCACCAACCTAGTCCGTTACGTGACTTAGTCCTTTACTAGTGTTGATGTGTCACCTAGCTCAAGTATGGTGGATAGCTTTAGTAGAATGGTTGTGGTGTCTGGAAACACTAAGGAAAGCTAGAGAGAAGCTTGGAAAGTGAACGAAATACCCCTTTTATTGATTACCGAAGATGTATGCATTAAATGGTTTACAAGATACTAGACCAAGGGTTTTGATGTGTCGTGTGTCAGTCTATGTGAATGGCTGCTCATGCCTACTAAGGTGCAGTCTTCGGTCTCCTACTATTTATAGGCTCCTAAGGCTTTGGATCCTTCAAAGTTGGTGGAAACCCCACTAAATCTGGTGGGCTTTGGGCTACCTAATGTACCCAAGGGCGAGTCTTTCTAGGTATTTCTAGAATCTTCCTCAAATTGCTAGCTTTCTTCGGCTGTCCTTTGGTATCCTTTGCTTGTTCTTTGTCGATCCCTTTTGATATTTTGAGGTTCTTGAGTCTTCTAGGATCCATGGGAACTTTTGCCATCTTTGGGAACATTCTTAAAACTTCCGTCCATTAATGTAGTTTGCTTAGTGGTCTTGGCATGTTTTTAACTTCACTTTATCATGCTCTATTGTGCTTCTTCCAATTTATTAGGCACATTTCAATGTTGAGACATCTCCTAATATGTTCCATGTCACACTTGCACATATCTGCCTGGCCCGATTTTCAATTGTAACCACAGGTCACACGACCATTGTTCAATATGGATTGTGTATGCTCCAGCCCTCTTTTTGTTGTCTTGCTCTGTTTAGGCAACTCGTGGCATGCATGGACAATCAATGCTTTTGGCTGGGTGTGACGATAAACCCAATGTTAATTAAAAAGAGATGAATTATAATTACTGTTAGAAAATAAGGATGAATTATCATAATGACTCAACTTTTTCTTTGAATTGGATAATGGCGCCTCAACTTTGAAAGGTTGGACATGGTCATGTCGGAAATTTTACTAAACCATGTATTATTCGATGCAGGTATGAAAAAAGTTACATGCACCGAGACGTGGTTACTCATGTTGCTGTTTCAGCAGCAGATTTTTTCATTAGTGGGAGTACTGATGGTAAGAGAGGACATATTAATTCTTGATGTTTGCTTAAATCACCAAATTCTCTTCTTTATTGTCCAGGTCACCTGAAATTTTGGAAGAAAAAGCCTACTGGTATCGAGTTTGCAAAACATTTTAGATCTCATCTTGGACCAATTGAAGGCCTTGCAGTAAGTAGCCAAAGGCTCACTGGAAGCAGTATTCCCTATTCCAGTTTATTATCAGTATGCTTGAACAGAACAATCCGCAACTTAACCTAAATTTCTTTGCAGGTTAGCATTGATGGTATGCTTTGCTGTACAATTTCAAGTGATAAGTCTCTGAAAATATATGACGTAGTGAATTATGACATGATGTCCATGATTCGTCTTCCCTTCATACCTGGATGTGTTGAATGGGTATATAAACAAGGGGATGTCAAGGCTAAACTTGCCGTTAGTGATCGTAACTCCTCATTGGTGCATATATATGATGCAAGAGCTGGTACAAATGATCCTATAATATCTAAAGAGGTATTCTCATTGACTTGACTCAATACTAAGGTTGATATGTCGTTTGTGCAGTTCATTGGTCTTCTTTGTTATGTTAATATGAAGTTTCTACCAGCAGTCACACTAATCAAATTGCTAACTTAGTTTCCTTGTAATCAGGTACAGTTGTGCCCCATCAAAGTCATGAAATACAATCATGTCTTTGATACTGTGATATCAGCAGATGACAAAGGGATCATTGAGTACTGGAGTCCTGCCACACTTAAGTTCCCAGAGAATCTGTATGTGTTCAAGTTCTAAAAGTAATTTTCCTTGTATCTGGTCCCTTAACGGAGGCAATAATCATTGATTTCAGGGAGCTCAAACCCCAATCTAAGTTTTAGAATGATCCATTTGGATATTTGTATTACATCTCTATGTATGGAATCCAAGAATTTGTGTTTCCCTTTTCTCTATTGCCCTTTATTGCTTTGGAATGGTGTTTTTTTGGGGTTGGCGAAGAGTATCAATTTTAAATTCTGAAATATAGCCTTGTCAAAAAAGGCCTTATATGGCATCTATTATTAGACCATATCCGTTGTTATTTTAGTGTGTATTCACTTCAATAGAGTAGTACTAAATCTACCGGTTATGGTTTTTCTTATACGATCTAAGAATATAAGCATACATTATTTAATTTATAGGTCCACTCACTTTCTTTGCTATATTCAAGAGTTTGTCTCTTGCTCCTAATTGTAATAGTCACCGCTCATGCTTTTCTTATTATGTTCTGCCTGCAGGGTGAATTTTAGATTGAAGAGTGATACTGATCTCTTTGAAATTGTGAAATGCAAAACTGCTGTTTCTTCTATAGAGGTATTACAGGAAAACCTTTGCTGGAAAATATGTGTACTTAAACCCTTTTACTTAACAACAATAACTACTACTCTTTGACTATGTACATTAGTACATGTCAAGTTAGCTATAAGCAGTTTCAATTTCTTATTCTTATCAATTAGTGGACAGCGTCTTCAAAAACCTTTTATCCGTTTCTCTTTGTATCCAGGTAAGCCCTGATGGTAAACAGTTCTCGGTAACTTCACCAGATCGCAGGATTCGTATATTTTGGTTCAAGACAGGTAAACTAAGACGTGTGTATGATGAATCTCTTGAGGTAAGAAATTACTCCTTTAAATAATCTATTAACTTATGTATGTACAGATGTGGTTTTTGTCTTCTTCTGTTCCTTTTTATTTTTGGTGATAATCGAAAAATTTCCATCTTTTAGGTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAACTCTCCTAGGAATTAAAGTAAGAAAATGTCCAGTAAACTGTCAAGATGCATTTATATTTTCTGTTTCTTGTACATGTGCCTTACTGGAGTTATTATAAGTTTCATGCTACTTCGATGTTCATTTTCTTATTTTGGGTTAATTTTTCTATTGTCAGATTATAAATCTACACACTAACAAGGTATCTCGTATCCTGGGGAAGGTGGAGAGCAATGATAGATTTTTGAGAATTGCTTTGTATCAAGGTGATAGAAGTAGTAAAAAAGTAAGAAAAATCCCTGCTGCGGCAGCAAATGCAAATGAAAGCAAGGAGCCCTTGATAGATCCCAATCTACTTTGCTGTGCTTTCAAGAAACATAGAATCTATTTGTTCAGGTATCGTATATGCTATATAGTACAGAGAACGAAAAGAAGGCTATCTTGAACTTTGTTGCTTTTCTATCCATTGGTCAATGATGAACTTGGACCTTTTCCACTGCACTGACCTGTTCAGTCTAGACCTTAGTGGCATGGTAAAGGAAACATGGTGACAGCTTTATCTAAACTAGTCAAACTAGGACGTGTGCATGATGAAAAATGAATTGTTTTGAGAGATGCTTAAATATCGATTTTTCTACTAGAATTAAGCTTTAAAGTTGTCTGATAACTATCTTGAGCCGTGAAAAAATTGGAAAGTTCAGTTGGCTGCTGTTTCTTCGACATTGGGTGATTTAAATTGATGTTCCATACTTCTATAAAGTATCAGCCCTTGCCCTCTTGTTATCTCTTCTGTTGAATAAAACCTCATTTTCTTGTTTAAATTTCAAATTTATGCTTATTAACAGCTCAGATTTTATTCTTTAACAGTCAGAGAGAACCTGAGGAACCTGATGATCCTACCAAGGGAAGAGATGTCTTCAATGAAAAGCCACCTCCTGATGAACTTTTGGCCGTATCTGACATTGGGAAGTCCGTTACTACATCCCTTCCAGATAATGTGGTAAGTTATGGTTTTACTTGGCATATATCAAATAAATGGAAAATTTCAGATAGGTTCCGTTTTGGATTAGCTTAAAAAAAATAGCTTTTAAGTCAAAATAAAAAGTAGGGAAGGCCTACTTTTGGTTTTTAACTTATTTTAAGTTATTTTTAACCTTGTCAAACACTTCCCAACTTACTTTAAATCATTTTTTGCTTATTTTGAATTATTTTTATATTTGACTAACATTTGCAGAAGTCAAAAACTGACTTAGAAGTAGGTTTGACCAACTTTTAAGCCTATCCAAAACCCCTCTTGAACTGGATATCCTTGTCCATGAGTTTGTAGGAGCCGAACTGTATGTGAGTGACAATGATTGGTATCGACTGACAAAGGTTTTAAGTAAGATTGATTTTTGTGGTCCGTTTAAATCAAGTCACTTAATCCTGAATAAAGGACTTACCTTCTTCTACTTCTGTTTTCTGATTCCTGATCAATCAATGAATGAGATAACAGTATAGCATGCTATAAAACCGCTACCTCGAGAATGGTCTTCATAAGCTGGTACACGATGGGCAAACCTATTATGCGCTCTTGGGCAACCTTTCTTAACTGAAGAATGACACTTTTCTGCATTATTGTGGTATTCATAAAAGATTATAGTTCTTTCTATGTTATTCGGACTCTACAAAAATGTTGCCACCCCCGTGACAGATCCTCCAAAAAGTCATTACTTTTGGAGGATCCAACATGAACCTGGTGGGATTTTTAAGAGTCCGAGCAACGTATGTTCTTCCATTATTACTTCGCGTGGTAGAGGCCCTTCCTTTTTATGTATTTGTACTAATCCTGAGATAGACAGAAATTTGCTGATTCATTTCTTTCTTTCTTTTGCTCTGACCTAGATCATGCATACCAGTATGGGTGACATTCATATGAAGCTATACCCTGAAGAGTGTCCAAAAACAGTGGAGAACTTTACAACACACTGCAGGAATGGATACTATGATAATTTGATATTTCATCGGGTCATCAGAGGCTTTATGGTTCAGACAGGAGATCCATTAGGAGATGGCACGGGTGGCCAATCTATTTGGGGAAGGGAGTTTGAAGATGAGTTCCATAAAAGGTATGTTAATGTATTGTTTTGTATATATCCATAAAAGCATAATTGTACAGGCTTAACTTATTTCCTATGCTCCCTCCTTCCTAGATATGTGTCGTGTGAAGGGCCGTTGTTTTACTGATGCTGCTTATTTAGTTTTTTGGAATGTTGAACGTGATGGTAGACTGTGGGAACCGGAAGTCTAGGCTCATAATAAAAGATTGTTCCATTTGAGTGTAAAATGTGTTTTTAGGTTCAATCGACCTTTTTTTTCTTTGAACATCAGCCCATTTTTAAGTGTCTGCAGCAGTAAAAGGGAATAAAAAAACCCAGTCAAATGGTAAGACTAATTAAGTATTCAATCCATGGAGTAAATGGATCCATAGTAATAGTACAGTGTAATTTTTTATCCGTGTACTTAAGGTTGCTGAAGCTTTTGCAGCCCCTAATATGCAATAGAAGATTGCCAGTGCATAGTTTAGAAATAAAAGTTAATGACTAGCCAAAAATGAAATCTCTTTTGCTTGCCTTCCTTTACTCGTCTTAAATATGCTGATGACCATGATTTTGTCAGTGTTTTGAATTTTTAAATTCAGTTGCAAATAATAAATTGCTAATTCTTCCTGGCAACAGCTGTTTAGCTATATCATGAATTTAACTAGATGACCCAGCGATTTCCTCCCTACCAATGAAAAGTATCTTTTGCTTTTCTGTGCTTTTTATATTATCATACAATTCTAATGCTTATGATTATGAAAGTGACTGATTGAATCTAATCAGAAGCTTGTACTCCATTCATGGAGCCACAAGTATACTTCTGGAACACGTCATAATATTTAGCATGTGCTGTAGTCTTCTTCCTTGCTTGACTCTGGAGATTCATTTTGCTTGCTTTGTAGACTCCGAGAAGATTTTTCTAGGGTCTAGAGAATGGATAGCTTAGTCATTGCCTTAAATAACAGCTGACGCAGCCTCATGACATCTAATTTTAACTTGATTTTCTAAATAGCTGATAAACATGTTTTCTAGTTTATGCTCTGGGTTAAGTTCATCTAAACGATTATATTGGTCTGTGCAGTCTGCGACATGATAGACCCTTCACTGTCTCGATGGCTAATGCTGGGCCAAACACAAATGGCTCTCAATTCTTCATAACAACTGTTGCCACTCCATGGTTGGACAATAAGCACACAGTTTTTGGCAGAGTGGTGAAAGGAATGGATGTTGTACAGGTATTATTAGCTTATAAAGTTTCCCCCTCCTGTCTCTGCTATGGATTGATTACTGAACTAATAGACCACTTGGAGCTTTGTCCTGATCAGCACAATATCTCTAGTTATTTATTTATCCAGAAAGGAAGAAAGTTGGTGAATATGTTGTAGTTCAAATTGAAATGATAATTGCTGCAGTTTGTCTGATGTGATATTTAATGCATGGTTACTTCTTGGGACCTGATTAACCATTCCTTTTCTTTTGGATTTTTACAGTCTTT</genome_strand>
        <mrna_strand>TCACTGAGAAAGCAAATTTCTGCAGCAAATCGGAAGTGAGATTGGAAATCCGGCGACGGCGACGGGAGAGATGGAGGAAGCAGATCAGAATGAGAACGGAAATCCGGCGGCGGCGGTGGTGGAGGAAACCGAAACGGTTATTGGACCGGGTCCAGCTCCTCGTGCTCGTGCTAAACGTCCTCTTCAATTTGAGCAAGCTTATCTCGATTCACTTCCGTCTGCTAACTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAAAAAAGTTACATGCACCGAGACGTGGTTACTCATGTTGCTGTTTCAGCAGCAGATTTTTTCATTAGTGGGAGTACTGATG..................................................................GTCACCTGAAATTTTGGAAGAAAAAGCCTACTGGTATCGAGTTTGCAAAACATTTTAGATCTCATCTTGGACCAATTGAAGGCCTTGCA......................................................................................................GTTAGCATTGATGGTATGCTTTGCTGTACAATTTCAAGTGATAAGTCTCTGAAAATATATGACGTAGTGAATTATGACATGATGTCCATGATTCGTCTTCCCTTCATACCTGGATGTGTTGAATGGGTATATAAACAAAGGGATGTCAAGGCTAAACTTGCCGTTAGTGATCGTAACTCCTCATTGGGGCATATATATGATGCAAGAGCTGGAACAAATGATCCTATAATATCTAAAGAG..........................................................................................................................................GTACAGGTGTGCCCCATCAAAGTCATGAAATACAATCATGTCTTTGATACTGTGATATCAGCAGATGACAAAGGGATCATTGAGTACTGGAGTCCTGCCACACTTAAGTTCCCAGAGAATCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAATTTTAGATTGAAGAGTGATACTGATCTCTTTGAAATTGTGAAATGCAAAACTGCTGTTTCTTCTATAGAG..............................................................................................................................................................................................GTAAGCCCTGATGGTAAACAGTTCTCGGTAACTTCACCAGATCGCAGGATTCGTATATTTTGGTTCAAGACAGGTAAACTAAGACGTGTGTATGATGAATCTCTTGAG..................................................................................................................GTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAACTCTCCTAGGAATTAAA..........................................................................................................................................ATTATAAATCTACACACTAACAAGGTATCTCGTATCCTGGGGAAGGTGGAGAGCAATGATAGATTTTTGAGAATTGCTTTGTATCAAGGTGATAGAAGTAGTAAAAAAGTAAGAAAAATCCCTGCTGCGGCAGCAAATGCAAATGAAAGCAAGGAGCCCTTGATAGATCCCAATCTACTTTGCTGTGCTTTCAAGAAACATAGAATCTATTTGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAGAGAACCTGAGGAACCTGATGATCCTACCAAGGGAAGAGATGTCTTCAATGAAAAGCCACCTCCTGATGAACTTTTGGCCGTATCTGACATTGGGAAGTCCGTTACTACATCCCTTCCAGATAATGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGCATACCAGTATGGGTGACATTCATATGAAGCTATACCCTGAAGAGTGTCCAAAAACAGTGGAGAACTTTACAACACACTGCAGGAATGGATACTATGATAATTTGATATTTCATCGGGTCATCAGAGGCTTTATGGTTCAGACAGGAGATCCATTAGGAGATGGCACGGGTGGCCAATCTATTTGGGGAAGGGAGTTTGAAGATGAGTTCCATAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCGACATGATAGACCCTTCACTGTCTCGATGGCTAATGCTGGGCCAAACACAAATGGCTCTCAATTCTTCATAACAACTGTTGCCACTCCATGGTTGGACAATAAGCACACAGTTTTTGGCAGAGTGGTGAAAGGAATGGATGTTGTACAG...............................................................................................................................................................................................................................................................TCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1708" ref_strand="+" ref_description="SGN-M1708 T1014 [cos_markers]">
      <seq>agaaaacggagaagcatacttcccgtagttgtagcagtagcttgccggagccggcgatcggagatacttccgtccatagccgaagctgaaaatgcctagagttaagacaaaccgtataaaataccctgagggttgggagttgattgagcctacgttagctgaactggatgttaaaatgagagaagctggcaatgactctaatgacggtaaaagaaagtgtgaagcactctggcccatattcaaggttgcacatcagaggagcagatatgtatatgacctttactatggaaggaatgaaatatctaaagagctgtatgaattctgtttggaacaaggttatgcagatcgcaacttgattgcaaagtggaaaaagcctggatacgagcgtctctgctgcttgcactgcatacagccccgggatcacaactttgcgactacttgtgcgtgtcgtgtccccaaacacctcagggaaactgctgtaattgaatgtgtacattgtggatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="81920" stop="86968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82220" g_stop="82304" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82305" i_stop="85388" i_length="3084">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85389" g_stop="85488" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="185" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85489" i_stop="85587" i_length="99">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85588" g_stop="85775" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="373" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85776" i_stop="86535" i_length="760">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86536" g_stop="86668" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="506" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-M1708" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M1708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82220" e_stop="82304"/>
          <exon e_start="85389" e_stop="85488"/>
          <exon e_start="85588" e_stop="85775"/>
          <exon e_start="86536" e_stop="86668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAACGGAGAAGCATACTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAGGTAATTAAACACCTTCTCTACTTTCGAACAACTTCTATGTGCACAAAAATTGTTTCGGTTACTCGATTATAATTCTTTTTATGGATTTTTGTGCAATGATAATTTCGATGACGATCCTTGTAACTATGCTTCATTGAACGGGGTGTTTATAGGAAACAACCTCTCTAACTCGTAAATATAGGAGTAAGGTTTGCGTATAGTTTGTCCTTCACAGACTCCACTCGTGAGACTATATTGAATATGTTGTTGTTTATAATATCTATACCTCAAGGTCTGTGTGCACTCTTCGAGCTTGTTAGACTCTACTTCGTGGGACTACAATGAGTATGTTATGTTGTTAGAATCTCTCATGTGATGATAGTGGAACAAAACTTGATTGAACATAGATAGTGGTGGAAGTAGGAATTTATACAAAGGGATTCAAAAGTGGTAGCGATTTCTGAAATCCTTTGGGCTTTGTCACCTCAATAAAATTATCTTATGTCTAGGGGATTCAACTGTTTTAATTATGACAATAACGTCATACCAACCCACTGTAATTGTAATCTCACAAGTGGGGTATGGGGAGAATAATGTGATGGCTTTTGTAATTGAACGTCCTGGCATGAAATCGAACTGGTTCTCGGAAATAAACATGTTCCTCCTCACCCTTCTCCATCACCTCTCCCAAACCTTCATAGTGTGGCTTAACAACTTGATACCCTTATAGTTGTTGCAATTCTGGAAAAATTCCACTGTTTTTATAGAACTGAAAAATTCGTTTTTTAGCCCTGTTTGCATCGTATGGTTTTTTCATGAAATGGTCAATGCTCATAGTAGGTGTAGAAATATATTCAGACGGGAGATTATTGAGGAAACTGTGGAAGATTTAAAAGAGATTTAAGAGTGATCTTTAGAATTCTATGAGAGACTATTGTAGGAAAATGGAGCATTCGGAACCAGATTGATAGGATGATGATTTGATATTCTTAATACCAGAGTATAAATAATGTTACAAAATTCCTTAGAGAAAAAAAAATGAATCTATTTTTGGTAGAGAAAGTGAAGGCAGTTGTAATAAGCAATGTTCATGATAAGGCCCTTCGTCATTATTTCTGAGATGCCTGTTAATGTTGGAATTTTTTTTGAAGGGAACCTTTTTTGGGAAAGTTTTAGTGCCGCCTTTATTGCTGTAATAGCAAAGAACATAGACAGTTGAATTGAAAGATCTCAGACTAATTAGCCTTTAGTTAAGAGGATATAATCCTGCCCTGCTTGTTAGCAGATGATGGCCAAAATGCCTGTTCTATTTCTAGGGGTGATGGGGTCTCTCATCTTGGTGATAATATGGACCGTGAAATATGAGTGGATAAAAGGTTTTGGGATTGGTAAGTAAATAGAAGCATAGTGGAAGTATTGCCCTGCTTGTTAGCAGATGATACACACTGTGTGGTGCTGAAGTAGTGGTAGTCGAATATTTAAGATAATAGTGCTCCCAGCTGTTGTTGCTATTGCTGGGTATCACATTAACTTGACCAAGAGTAGCATATTTTTGGTGAATGCTAGAAATTTAGTAGATGAGCTGGCAAGTACACATATTGGGGACTACAGTGGAATATGTCCCGCCAGATTGGCCGGATGTTATCAAATGGTGTGGAACTAGGACCTTGAAAGAAGTAATATCTTTCTTTTGGAGGAAGGGTGACATTGATAAATAATGTATTAGATATTTCGGCTGTTCAAATTCTTACCGAAGTTGAGAAACAACTGGACTACTTGAGATGTAAAGAGATGCTGTGAAAGAAAGAAGGTATATTTGATCCAATGGTCCACACTGACAGTTGACTAAAGCAAAAACTAGTGGAGAATTAGTAGTGAAGAAACTAAGGCTTCATAATAGGAGCCTTCTTTTCCAATGGCTGTGGTATTCTGCAGAAAAGGAAGAGCTATGGAAGGAGTTGGTAAAAGAAAAATATGATGTGGATAGACAATTAGATAGAAAGCTCGACATGCTTGTCATGGTGGCTGTATGTAACAGAGTAGGAACCTATGACGAGTTTTCAGAAGTAATCAACTGAAACTGCATTGTGGTAAAAGATACAATTTTTATAGGATTAGGATAAGGTGCTGGATAACTACAGATCGAGGGAGGTGTGAGGTTATCTTGCCCCTTGGCCAACTGCCTGAATGATGATGAGGAACCTATAGTATAGAAGAAATCTGGAGGATCGAAATATTGAAACTGTTAGCTGTCAGACCGGACCGGATCCTACTCAAGAGTACCAGACCTAATGCCAGCATGAAGGATGATAATTTCTCAGTTAAGTCTTTTTATGAATGGTTATAAGCAGAGTATGATGGGATATTGGCCATTTGCCATGGAAAATGATTTGGAAAGCAAATGCTGCTGGCTAGAGTTTCTGTTTTGAATAAATTGTTTTGCATGAGGAATGTCTAAGACAGGACAACTTGCCAAAGTGAGGAATTAGTCTGTGCAATAGATGCTTTTTACTGCAGAGAGAGGCTGTCTTAATGGAAATACCTATTGATGTAAATAAGATAAATCCTTACTTGGTTAAAAGAAAAAAACAAATAGGGTATGGGTGAATTGTGGATGCATTAAGCAGCTTGGGTTTGATTTTGGGACTATATGGATGAAGTGTGGATGCACTAAGTAGCTTTGGGTGGGGTGGGGTGGGGTGGGGGTAGAGGTTTTAGAAGAGCCAGAGAATGCTTTGGAATATGATTTCTTTTCTATGTTTGGGCAGTCAAAGAATGGAAGGAAGCATAGATGTTTCAGGATATAACCTTATCCTTACTGGGAACTTTCAATATTCTTACAGAATATGTACTTTTGTAGTAATAGATGATCCTGTCAATATGGTGGAATTCATAGACTCCCTGCACTCTTACAGGGAATGATTCCTCACTCATTTTGTACTGACATAGCATCTTCTTGATGCTGGTTATTGACGATAAAGAAACTTAATTTTCCTATAAAAAAATGTTTTCATGTTGTTGGTACATAAATTATTGGGGTATTGCTACTTTTCTCTTTATGTTGTCTTACAGATGGAATAAGTCTCTTCATTTTTTTATTTGCAGCTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAGGTAAGTAATTTGATGCTAGGTGGAATTCAGCAATCCCATTTTGCCTTTTTTAATTGAAATTCCAGACCATTAACTTCTGTTTTATTTGGGTTTTGGTAGCTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAGGTAATTGATGGCAACTTCCTTTGGAACTTATAAAATCTGTCTGTTCTAGTTAACCGCCCTGCCTCTTGCTCATCTAAAGTCAAAGTGAAAAAGTAATAAAGAGGGTGAAAATTTGTGATAGCTACAGTTTTTCTCTCTTTACATCTTTGGGATGCATACAAAACCCCTTCATCTTTTTAGTTTTTTTTGACAATTTGCCCATGACAAGGGAACAAGAGCAAATGCCCAAAAGCACAGTACAAAATGAAAAACTAAAAAAGGCGTTCTTTTCTTTTCTTCCTCATCTGCTGACTTCATCTATGTCTGTTAGATTTTAATATCCTTTCTAGGGAAATATTCATATATTTACTAATCTTTCAACATATTATCCATATTAAACATTGTTTGTCTTAGTTAGATGCTAGTTAATGGATGGAAAAGTTTGGAAGATAGGAGGCGTATTTTATTCCAGAAACTTGAAGCTTACCAAGATTTAGCATGTTTTGCCTCTGGAAACAGATTCATAGGCATTCTAGGAAAATGATTCTTCTTCTTTTTCTTGGAGAGGAGGTGTGATCTTTTTAAAATACCTGCACCGTTCTATTGAACTGTGTTTGACCCTTTGCTTCTTATCACCCATCAGATACTTTCTTGCTGAGACGGTAAACAAACGTTTTTCAGGCTTACAGCTTATTTACAGGCACTAAAACCCATCTTACCAGCCTTTGTATTTGGTCACTTGTATTTAACTCTTTCCTGTTTCCTGGGATTCGACTTGCAGCCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTC</genome_strand>
        <mrna_strand>AGAAAACGGAGAAGCATACTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAG...................................................................................................CTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>2</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="29482" PGL_stop="22340"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29482" e_stop="29255"/>
            <exon e_start="27881" e_stop="27796"/>
            <exon e_start="27729" e_stop="27641"/>
            <exon e_start="27538" e_stop="27299"/>
            <exon e_start="27160" e_stop="27039"/>
            <exon e_start="26540" e_stop="26465"/>
            <exon e_start="26274" e_stop="26167"/>
            <exon e_start="26052" e_stop="25876"/>
            <exon e_start="25737" e_stop="25520"/>
            <exon e_start="25048" e_stop="24916"/>
            <exon e_start="24031" e_stop="23808"/>
            <exon e_start="22753" e_stop="22600"/>
            <exon e_start="22344" e_stop="22340"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.998" e_score="0.996"/>
          <exon-intron don_prob="0.960" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.864" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.777" e_score="0.988"/>
          <exon-intron don_prob="0.979" acc_prob="0.974" e_score="0.992"/>
          <exon-intron don_prob="0.983" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.919" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="29482" e_stop="29255" e_length="228"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.998">
            <gDNA_intron_boundary i_start="29254" i_stop="27882" i_length="1373"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27881" e_stop="27796" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27795" i_stop="27730" i_length="66"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27729" e_stop="27641" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.864" acc_prob="0.926">
            <gDNA_intron_boundary i_start="27640" i_stop="27539" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="27538" e_stop="27299" e_length="240"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.777">
            <gDNA_intron_boundary i_start="27298" i_stop="27161" i_length="138"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="27160" e_stop="27039" e_length="122"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="0.974">
            <gDNA_intron_boundary i_start="27038" i_stop="26541" i_length="498"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26540" e_stop="26465" e_length="76"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="0.975">
            <gDNA_intron_boundary i_start="26464" i_stop="26275" i_length="190"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="26274" e_stop="26167" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="26166" i_stop="26053" i_length="114"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="26052" e_stop="25876" e_length="177"/>
          </exon>
          <intron i_serial="8" don_prob="0.919" acc_prob="0.976">
            <gDNA_intron_boundary i_start="25875" i_stop="25738" i_length="138"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="25737" e_stop="25520" e_length="218"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="25519" i_stop="25049" i_length="471"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="25048" e_stop="24916" e_length="133"/>
          </exon>
          <intron i_serial="10" don_prob="0.995" acc_prob="0.922">
            <gDNA_intron_boundary i_start="24915" i_stop="24032" i_length="884"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="24031" e_stop="23808" e_length="224"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.984">
            <gDNA_intron_boundary i_start="23807" i_stop="22754" i_length="1054"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="22753" e_stop="22600" e_length="154"/>
          </exon>
          <intron i_serial="12" don_prob="0.986" acc_prob="0.991">
            <gDNA_intron_boundary i_start="22599" i_stop="22345" i_length="255"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="22344" e_stop="22340" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29482" stop="29255"/>
              <exon start="27881" stop="27796"/>
              <exon start="27729" stop="27641"/>
              <exon start="27538" stop="27299"/>
              <exon start="27160" stop="27039"/>
              <exon start="26540" stop="26465"/>
              <exon start="26274" stop="26167"/>
              <exon start="26052" stop="25876"/>
              <exon start="25737" stop="25520"/>
              <exon start="25048" stop="24916"/>
              <exon start="24031" stop="23808"/>
              <exon start="22753" stop="22600"/>
              <exon start="22344" stop="22340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7923" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACTTAGAAAGCAAATTTCTGCAGCAAATCGGAAGTGAGATTGGAAATCCGGCGACGGCGACGGGAGAGATGGAGGAAGCAGATCAGAATGAGAACGGAAATCCGGCGGCGGCGGTGGTGGAGGAAACCGAAACGGTTATTGGACCGGGTCCAGCTCCTCGTGCTCGTGCTAAACGTCCTCTTCAATTTGAGCAAGCTTATCTCGATTCACTTCCGTCTGCTAACTT : GTATGAAAAAAGTTACATGCACCGAGACGTGGTTACTCATGTTGCTGTTTCAGCAGCAGATTTTTTCATTAGTGGGAGTACTGATG : GTCACCTGAAATTTTGGAAGAAAAAGCCTACTGGTATCGAGTTTGCAAAACATTTTAGATCTCATCTTGGACCAATTGAAGGCCTTGCA : GTTAGCATTGATGGTATGCTTTGCTGTACAATTTCAAGTGATAAGTCTCTGAAAATATATGACGTAGTGAATTATGACATGATGTCCATGATTCGTCTTCCCTTCATACCTGGATGTGTTGAATGGGTATATAAACAAGGGGATGTCAAGGCTAAACTTGCCGTTAGTGATCGTAACTCCTCATTGGTGCATATATATGATGCAAGAGCTGGTACAAATGATCCTATAATATCTAAAGAG : GTACAGTTGTGCCCCATCAAAGTCATGAAATACAATCATGTCTTTGATACTGTGATATCAGCAGATGACAAAGGGATCATTGAGTACTGGAGTCCTGCCACACTTAAGTTCCCAGAGAATCT : GGTGAATTTTAGATTGAAGAGTGATACTGATCTCTTTGAAATTGTGAAATGCAAAACTGCTGTTTCTTCTATAGAG : GTAAGCCCTGATGGTAAACAGTTCTCGGTAACTTCACCAGATCGCAGGATTCGTATATTTTGGTTCAAGACAGGTAAACTAAGACGTGTGTATGATGAATCTCTTGAG : GTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAACTCTCCTAGGAATTAAA : ATTATAAATCTACACACTAACAAGGTATCTCGTATCCTGGGGAAGGTGGAGAGCAATGATAGATTTTTGAGAATTGCTTTGTATCAAGGTGATAGAAGTAGTAAAAAAGTAAGAAAAATCCCTGCTGCGGCAGCAAATGCAAATGAAAGCAAGGAGCCCTTGATAGATCCCAATCTACTTTGCTGTGCTTTCAAGAAACATAGAATCTATTTGTTCAG : TCAGAGAGAACCTGAGGAACCTGATGATCCTACCAAGGGAAGAGATGTCTTCAATGAAAAGCCACCTCCTGATGAACTTTTGGCCGTATCTGACATTGGGAAGTCCGTTACTACATCCCTTCCAGATAATGTG : ATCATGCATACCAGTATGGGTGACATTCATATGAAGCTATACCCTGAAGAGTGTCCAAAAACAGTGGAGAACTTTACAACACACTGCAGGAATGGATACTATGATAATTTGATATTTCATCGGGTCATCAGAGGCTTTATGGTTCAGACAGGAGATCCATTAGGAGATGGCACGGGTGGCCAATCTATTTGGGGAAGGGAGTTTGAAGATGAGTTCCATAAAAG : TCTGCGACATGATAGACCCTTCACTGTCTCGATGGCTAATGCTGGGCCAAACACAAATGGCTCTCAATTCTTCATAACAACTGTTGCCACTCCATGGTTGGACAATAAGCACACAGTTTTTGGCAGAGTGGTGAAAGGAATGGATGTTGTACAG : TCTTT</gDNA_template>
            <first_frame> S  L  R  K  Q  I  S  A  A  N  R  K  *  D  W  K  S  G  D  G  D  G  R  D  G  G  S  R  S  E  *  E  R  K  S  G  G  G  G  G  G  G  N  R  N  G  Y  W  T  G  S  S  S  S  C  S  C  *  T  S  S  S  I  *  A  S  L  S  R  F  T  S  V  C  *  L  :  V  *  K  K  L  H  A  P  R  R  G  Y  S  C  C  C  F  S  S  R  F  F  H  *  W  E  Y  *  W :   S  P  E  I  L  E  E  K  A  Y  W  Y  R  V  C  K  T  F  *  I  S  S  W  T  N  *  R  P  C   : S  *  H  *  W  Y  A  L  L  Y  N  F  K  *  *  V  S  E  N  I  *  R  S  E  L  *  H  D  V  H  D  S  S  S  L  H  T  W  M  C  *  M  G  I  *  T  R  G  C  Q  G  *  T  C  R  *  *  S  *  L  L  I  G  A  Y  I  *  C  K  S  W  Y  K  *  S  Y  N  I  *  R   : G  T  V  V  P  H  Q  S  H  E  I  Q  S  C  L  *  Y  C  D  I  S  R  *  Q  R  D  H  *  V  L  E  S  C  H  T  *  V  P  R  E  S  :  G  E  F  *  I  E  E  *  Y  *  S  L  *  N  C  E  M  Q  N  C  C  F  F  Y  R   : G  K  P  *  W  *  T  V  L  G  N  F  T  R  S  Q  D  S  Y  I  L  V  Q  D  R  *  T  K  T  C  V  *  *  I  S  *   : G  G  T  R  S  P  E  E  *  C  S  F  I  P  T  *  S  Y  *  L  W  T  K  N  G  C  G  K  R  N  *  E  N  R  M  C  T  T  T  *  C  C  F  *  *  K  F  Q  F  H  Y  I  C  N  S  P  R  N  *   : N  Y  K  S  T  H  *  Q  G  I  S  Y  P  G  E  G  G  E  Q  *  *  I  F  E  N  C  F  V  S  R  *  *  K  *  *  K  S  K  K  N  P  C  C  G  S  K  C  K  *  K  Q  G  A  L  D  R  S  Q  S  T  L  L  C  F  Q  E  T  *  N  L  F  V  Q  :  S  E  R  T  *  G  T  *  *  S  Y  Q  G  K  R  C  L  Q  *  K  A  T  S  *  *  T  F  G  R  I  *  H  W  E  V  R  Y  Y  I  P  S  R  *  C   : D  H  A  Y  Q  Y  G  *  H  S  Y  E  A  I  P  *  R  V  S  K  N  S  G  E  L  Y  N  T  L  Q  E  W  I  L  *  *  F  D  I  S  S  G  H  Q  R  L  Y  G  S  D  R  R  S  I  R  R  W  H  G  W  P  I  Y  L  G  K  G  V  *  R  *  V  P  *  K  :  S  A  T  *  *  T  L  H  C  L  D  G  *  C  W  A  K  H  K  W  L  S  I  L  H  N  N  C  C  H  S  M  V  G  Q  *  A  H  S  F  W  Q  S  G  E  R  N  G  C  C  T   : V  F </first_frame>
            <second_frame>  H  L  E  S  K  F  L  Q  Q  I  G  S  E  I  G  N  P  A  T  A  T  G  E  M  E  E  A  D  Q  N  E  N  G  N  P  A  A  A  V  V  E  E  T  E  T  V  I  G  P  G  P  A  P  R  A  R  A  K  R  P  L  Q  F  E  Q  A  Y  L  D  S  L  P  S  A  N  L :   Y  E  K  S  Y  M  H  R  D  V  V  T  H  V  A  V  S  A  A  D  F  F  I  S  G  S  T  D   : G  H  L  K  F  W  K  K  K  P  T  G  I  E  F  A  K  H  F  R  S  H  L  G  P  I  E  G  L  A  :  V  S  I  D  G  M  L  C  C  T  I  S  S  D  K  S  L  K  I  Y  D  V  V  N  Y  D  M  M  S  M  I  R  L  P  F  I  P  G  C  V  E  W  V  Y  K  Q  G  D  V  K  A  K  L  A  V  S  D  R  N  S  S  L  V  H  I  Y  D  A  R  A  G  T  N  D  P  I  I  S  K  E  :  V  Q  L  C  P  I  K  V  M  K  Y  N  H  V  F  D  T  V  I  S  A  D  D  K  G  I  I  E  Y  W  S  P  A  T  L  K  F  P  E  N  L :   V  N  F  R  L  K  S  D  T  D  L  F  E  I  V  K  C  K  T  A  V  S  S  I  E  :  V  S  P  D  G  K  Q  F  S  V  T  S  P  D  R  R  I  R  I  F  W  F  K  T  G  K  L  R  R  V  Y  D  E  S  L  E  :  V  A  Q  D  L  Q  R  S  D  V  P  L  Y  R  L  E  A  I  D  F  G  R  R  M  A  V  E  K  E  I  E  K  T  E  C  V  P  Q  P  N  A  V  F  D  E  S  S  N  F  I  I  Y  A  T  L  L  G  I  K  :  I  I  N  L  H  T  N  K  V  S  R  I  L  G  K  V  E  S  N  D  R  F  L  R  I  A  L  Y  Q  G  D  R  S  S  K  K  V  R  K  I  P  A  A  A  A  N  A  N  E  S  K  E  P  L  I  D  P  N  L  L  C  C  A  F  K  K  H  R  I  Y  L  F  S :   Q  R  E  P  E  E  P  D  D  P  T  K  G  R  D  V  F  N  E  K  P  P  P  D  E  L  L  A  V  S  D  I  G  K  S  V  T  T  S  L  P  D  N  V  :  I  M  H  T  S  M  G  D  I  H  M  K  L  Y  P  E  E  C  P  K  T  V  E  N  F  T  T  H  C  R  N  G  Y  Y  D  N  L  I  F  H  R  V  I  R  G  F  M  V  Q  T  G  D  P  L  G  D  G  T  G  G  Q  S  I  W  G  R  E  F  E  D  E  F  H  K  S :   L  R  H  D  R  P  F  T  V  S  M  A  N  A  G  P  N  T  N  G  S  Q  F  F  I  T  T  V  A  T  P  W  L  D  N  K  H  T  V  F  G  R  V  V  K  G  M  D  V  V  Q  :  S   </second_frame>
            <third_frame>   T  *  K  A  N  F  C  S  K  S  E  V  R  L  E  I  R  R  R  R  R  E  R  W  R  K  Q  I  R  M  R  T  E  I  R  R  R  R  W  W  R  K  P  K  R  L  L  D  R  V  Q  L  L  V  L  V  L  N  V  L  F  N  L  S  K  L  I  S  I  H  F  R  L  L  T   : C  M  K  K  V  T  C  T  E  T  W  L  L  M  L  L  F  Q  Q  Q  I  F  S  L  V  G  V  L  M  :  V  T  *  N  F  G  R  K  S  L  L  V  S  S  L  Q  N  I  L  D  L  I  L  D  Q  L  K  A  L  Q :   L  A  L  M  V  C  F  A  V  Q  F  Q  V  I  S  L  *  K  Y  M  T  *  *  I  M  T  *  C  P  *  F  V  F  P  S  Y  L  D  V  L  N  G  Y  I  N  K  G  M  S  R  L  N  L  P  L  V  I  V  T  P  H  W  C  I  Y  M  M  Q  E  L  V  Q  M  I  L  *  Y  L  K  R :   Y  S  C  A  P  S  K  S  *  N  T  I  M  S  L  I  L  *  Y  Q  Q  M  T  K  G  S  L  S  T  G  V  L  P  H  L  S  S  Q  R  I   : W  *  I  L  D  *  R  V  I  L  I  S  L  K  L  *  N  A  K  L  L  F  L  L  *  R :   *  A  L  M  V  N  S  S  R  *  L  H  Q  I  A  G  F  V  Y  F  G  S  R  Q  V  N  *  D  V  C  M  M  N  L  L  R :   W  H  K  I  S  R  G  V  M  F  L  Y  T  D  L  K  L  L  T  L  D  E  E  W  L  W  K  K  K  L  R  K  Q  N  V  Y  H  N  L  M  L  F  L  M  K  V  P  I  S  L  Y  M  Q  L  S  *  E  L  K :   L  *  I  Y  T  L  T  R  Y  L  V  S  W  G  R  W  R  A  M  I  D  F  *  E  L  L  C  I  K  V  I  E  V  V  K  K  *  E  K  S  L  L  R  Q  Q  M  Q  M  K  A  R  S  P  *  *  I  P  I  Y  F  A  V  L  S  R  N  I  E  S  I  C  S   : V  R  E  N  L  R  N  L  M  I  L  P  R  E  E  M  S  S  M  K  S  H  L  L  M  N  F  W  P  Y  L  T  L  G  S  P  L  L  H  P  F  Q  I  M  * :   S  C  I  P  V  W  V  T  F  I  *  S  Y  T  L  K  S  V  Q  K  Q  W  R  T  L  Q  H  T  A  G  M  D  T  M  I  I  *  Y  F  I  G  S  S  E  A  L  W  F  R  Q  E  I  H  *  E  M  A  R  V  A  N  L  F  G  E  G  S  L  K  M  S  S  I  K   : V  C  D  M  I  D  P  S  L  S  R  W  L  M  L  G  Q  T  Q  M  A  L  N  S  S  *  Q  L  L  P  L  H  G  W  T  I  S  T  Q  F  L  A  E  W  *  K  E  W  M  L  Y  S :   L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29481" stop="29255"/>
                    <exon start="27881" stop="27796"/>
                    <exon start="27729" stop="27641"/>
                    <exon start="27538" stop="27299"/>
                    <exon start="27160" stop="27039"/>
                    <exon start="26540" stop="26465"/>
                    <exon start="26274" stop="26167"/>
                    <exon start="26052" stop="25876"/>
                    <exon start="25737" stop="25520"/>
                    <exon start="25048" stop="24916"/>
                    <exon start="24031" stop="23808"/>
                    <exon start="22753" stop="22600"/>
                    <exon start="22344" stop="22342"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1857</number_coding_nucleotides>
                  <number_encoded_amino_acids>619</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLESKFLQQIGSEIGNPATATGEMEEADQNENGNPAAAVVEETETVIGPGPAPRARAKRPLQFEQAYLDSLPSANLYEKSYMHRDVVTHVAVSAADFFISGSTDGHLKFWKKKPTGIEFAKHFRSHLGPIEGLAVSIDGMLCCTISSDKSLKIYDVVNYDMMSMIRLPFIPGCVEWVYKQGDVKAKLAVSDRNSSLVHIYDARAGTNDPIISKEVQLCPIKVMKYNHVFDTVISADDKGIIEYWSPATLKFPENLVNFRLKSDTDLFEIVKCKTAVSSIEVSPDGKQFSVTSPDRRIRIFWFKTGKLRRVYDESLEVAQDLQRSDVPLYRLEAIDFGRRMAVEKEIEKTECVPQPNAVFDESSNFIIYATLLGIKIINLHTNKVSRILGKVESNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPLIDPNLLCCAFKKHRIYLFSQREPEEPDDPTKGRDVFNEKPPPDELLAVSDIGKSVTTSLPDNVIMHTSMGDIHMKLYPEECPKTVENFTTHCRNGYYDNLIFHRVIRGFMVQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="82220" PGL_stop="86668"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82220" e_stop="82304"/>
            <exon e_start="85389" e_stop="85488"/>
            <exon e_start="85588" e_stop="85775"/>
            <exon e_start="86536" e_stop="86668"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82220" e_stop="82304" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82305" i_stop="85388" i_length="3084"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85389" e_stop="85488" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="85489" i_stop="85587" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85588" e_stop="85775" e_length="188"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.978">
            <gDNA_intron_boundary i_start="85776" i_stop="86535" i_length="760"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86536" e_stop="86668" e_length="133"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82220" stop="82304"/>
              <exon start="85389" stop="85488"/>
              <exon start="85588" stop="85775"/>
              <exon start="86536" stop="86668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1708" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAACGGAGAAGCATACTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAG : CTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAG : CTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAG : CCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTC</gDNA_template>
            <first_frame> R  K  R  R  S  I  L  P  V  V  V  A  V  A  C  R  S  R  R  S  E  I  L  P  S  I  A  E   : A  E  N  A  *  S  *  D  K  P  Y  K  I  P  *  G  L  G  V  D  *  A  Y  V  S  *  T  G  C  *  N  E  R  S :   W  Q  *  L  *  *  R  *  K  K  V  *  S  T  L  A  H  I  Q  G  C  T  S  E  E  Q  I  C  I  *  P  L  L  W  K  E  *  N  I  *  R  A  V  *  I  L  F  G  T  R  L  C  R  S  Q  L  D  C  K  V  E  K   : A  W  I  R  A  S  L  L  L  A  L  H  T  A  P  G  S  Q  L  C  D  Y  L  C  V  S  C  P  Q  T  P  Q  G  N  C  C  N  *  M  C  T  L  W  M   </first_frame>
            <second_frame>  E  N  G  E  A  Y  F  P  *  L  *  Q  *  L  A  G  A  G  D  R  R  Y  F  R  P  *  P  K  :  L  K  M  P  R  V  K  T  N  R  I  K  Y  P  E  G  W  E  L  I  E  P  T  L  A  E  L  D  V  K  M  R  E   : A  G  N  D  S  N  D  G  K  R  K  C  E  A  L  W  P  I  F  K  V  A  H  Q  R  S  R  Y  V  Y  D  L  Y  Y  G  R  N  E  I  S  K  E  L  Y  E  F  C  L  E  Q  G  Y  A  D  R  N  L  I  A  K  W  K  K  :  P  G  Y  E  R  L  C  C  L  H  C  I  Q  P  R  D  H  N  F  A  T  T  C  A  C  R  V  P  K  H  L  R  E  T  A  V  I  E  C  V  H  C  G  C  </second_frame>
            <third_frame>   K  T  E  K  H  T  S  R  S  C  S  S  S  L  P  E  P  A  I  G  D  T  S  V  H  S  R  S :   *  K  C  L  E  L  R  Q  T  V  *  N  T  L  R  V  G  S  *  L  S  L  R  *  L  N  W  M  L  K  *  E  K  :  L  A  M  T  L  M  T  V  K  E  S  V  K  H  S  G  P  Y  S  R  L  H  I  R  G  A  D  M  Y  M  T  F  T  M  E  G  M  K  Y  L  K  S  C  M  N  S  V  W  N  K  V  M  Q  I  A  T  *  L  Q  S  G  K  S :   L  D  T  S  V  S  A  A  C  T  A  Y  S  P  G  I  T  T  L  R  L  L  V  R  V  V  S  P  N  T  S  G  K  L  L  *  L  N  V  Y  I  V  D  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82299" stop="82304"/>
                    <exon start="85389" stop="85488"/>
                    <exon start="85588" stop="85775"/>
                    <exon start="86536" stop="86667"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLKMPRVKTNRIKYPEGWELIEPTLAELDVKMREAGNDSNDGKRKCEALWPIFKVAHQRSRYVYDLYYGRNEISKELYEFCLEQGYADRNLIAKWKKPGYERLCCLHCIQPRDHNFATTCACRVPKHLRETAVIECVHCGC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 8 chains have been computed
$ 
$ memory statistics:
$ 4688 bytes spliced alignments in total
$ 2 spliced alignments have been stored
$ 2344 bytes was the average size of a spliced alignment
$ 7184 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3592 bytes was the average size of a predicted gene location
$ 5 megabytes was the average size of the backtrace matrix
$ 9 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 18:04:51
-->
