<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 20:57:24"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335079" ref_strand="+" ref_description="SGN-U335079        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0096D22.2" temp_strand="-" temp_description="C11HBa0096D22.2  AC212434.2 htgs_phase:3 submitted_to_sgn_as:gi|166159192|gb|AC212434.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence">
        <position start="8006" stop="7000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7706" g_stop="7370" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0096D22.2" gen_strand="-" ref_id="SGN-U335079" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0096D22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7706" e_stop="7370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTTACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCAGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCTCTAAATCTACGTGTC-GGTTCGTGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328660" ref_strand="+" ref_description="SGN-U328660        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT3G54850.1 | Symbol: None | armadillo/beta-catenin repeat family protein / U-box domain-containing family protein, contains Pfam domain, PF00514: Armadillo/beta-catenin-like repeats and Pfam, PF04564: U-box domain | chr3:20332409-20334998 FORWARD | Aliases: F28P10.170 (evalue: 1e-22, score=103) genbank/nr: gi|22331792|ref|NP_191045.2| armadillo repeat containing protein [Arabidopsis thaliana] gi|17529090|gb|AAL38755.1| unknown protein [Arabidopsis thaliana] gi|20465441|gb|AAM20180.1| unknown protein [Arabidopsis thaliana](evalue: 9e-21, score=103)">
      <seq>gattggcggccaatcggccgaattcccatggggatccgacgatgcttcacctgctttgttttttccttgtgtgaacaaagagctttgaattttctctttgattctcaaaattcatcaaatctttgagcttgaaatcacctcaagaacccaaaaaactcatgtcttttctcagtcaactcatcaaccaactgccaacccagcaaggatttgtataatcattgctgtttgtccatctgtgtgtgtctctaaatttgattaaagattccatttttccatctgggtgtctctcaatttgataaaaaaatccatttttccatctgggttttgctcaatttggttaaagaatcggtttttccagctgggttttgctcaatttggttaaagaatcgattttatccagctggggtttgctcaatttggttaaagaatcgatttttgtgcatatgggtcatcagaaagaggaattaatcaacgagctgacggagttaatcgatggggtttctggtttaccggagtgccggtcagtgtctaagaggatgtacagtaatttggtgagaagagtgaagcttttgagtcctttagttgaggatttgaaagatagtgatggtgttgaggttggagatgatgttgttcatgggcttgagttgttgaaaattgctcttatttcaggtttggagcttctcaaatctgtaaatgaaggcagtaagattcttcaggctttacagatcgagaacatatcatcaaggtttctagatgtgacagagcaaattgaagatgcactaagccacattccttacaataagcttgatttatctgaggaagttcgagaacaaattgaacttgtgcatgctcaatttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0096D22.2" temp_strand="+" temp_description="C11HBa0096D22.2  AC212434.2 htgs_phase:3 submitted_to_sgn_as:gi|166159192|gb|AC212434.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence">
        <position start="9354" stop="11469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9661" g_stop="10335" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="716" r_length="675" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10336" i_stop="10938" i_length="603">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10939" g_stop="11055" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="833" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11056" i_stop="11142" i_length="87">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11143" g_stop="11169" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="834" r_stop="860" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0096D22.2" gen_strand="+" ref_id="SGN-U328660" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0096D22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9661" e_stop="10335"/>
          <exon e_start="10939" e_stop="11055"/>
          <exon e_start="11143" e_stop="11169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTTCACCTGCTTTGTTTTTTCCTTGTGTGAACAAAGAGCTTTGAATTTTCTCTTTGATTCTCAAAATTCATCAAATCTTTGAGCTTGAAATCACCTCAAGAACCCAAAAAACTCATGTCTTTTCTCAGTCAACTCATCAACCAACTGCCAACCCAGCAAGGATTTGTATAATCATTGCTGTTTGTCCATCTGTGTGTGTCTCTAAATTTGATTAAAGATTCCATTTTTCCATCTGGGTGTCTCTCAATTTGATAAAAAAATCCATTTTTCCATCTGGGTTTTGCTCAATTTGGTTAAAGAATCGGTTTTTCCAGCTGGGTTTTGCTCAATTTGGTTAAAGAATCGATTTTATCCAGCTGGGGTTTGCTCAATTTGGTTAAAGAATCGATTTTTGTGCATATGGGTCATCAGAAAGAGGAATTAATCAACGAGCTGACGGAGTTAATCGATGGGGTTTCTGGTTTACCGGAGTGCCGGTCAGTGTCTAAGAGGATGTACAGTAATTTGGTGAGAAGAGTGAAGCTTTTGAGTCCTTTAGTTGAGGATTTGAAAGATAGTGATGGTGTTGAGGTTGGAGATGATGTTGTTCATGGGCTTGAGTTGTTGAAAATTGCTCTTATTTCAGGTTTGGAGCTTCTCAAATCTGTAAATGAAGGCAGTAAGATTCTTCAGGTATTGACTTTTGATTTAATTTTTGTCACTGTTGAATGATTTATGATGACAATTGCTTAGGACTTATCAATCTTGGTTGTAGAAAATCAGTTCAGTATCTGTTAAGAGTGAGTTAAGAGTATCAGGTTGGTTTCGGAATGGACTCGTGGTTTGCTTATATGGACTTGGATAGTTCTCTCTTCTTGAGCTAGATTTTAGGGTTAAGTTAGGTTTAGGTGTCATATCGTTGCATGTTATTATAGCTAGGTCCAACCCTGTTTGGGTTCTCGATCCACGCTCCTGTTGGTCTTGGGCGTGAATGGGGTTGTTAGAGTGGGTTTGAGTCCTATATTGATTGTGGAATGGATTGGTGTTTTGTTTATTTGGAATTAAGACATTCCTTTCGTGTTGAGCTAGCTTTTGAGGTTGAGTTAGGCGCAACTTGATGGTTCAAATAAATCATAAGTAGTTGTTTTCTGCACTAGCTTTACACATTGCATGATGGATGCCGTTTGTATGGTATCATCAAGTTCGTTGCGTCTCTGTGCTGAAAATTATCATCATGAATGACATTGTCTCTTACTTCATCTTTCCTAAGGATCACTTGCGTTTTTCGTCTTGCAGGCTTTACAGATCGAGAACATATCATCAAGGTTTCTAGATGTGACAGAGCAAATTGAAGATGCACTAAGCCACATTCCTTACAATAAGCTTGATTTATCTGAGGAAGTTCGAGAACAAGTACGTCATCTAGCAATCCTTTTAATGGTTATACCTGATGTCCATTATCTTTTACTGAAAATCTTCACATTGTTTGGTTTTTTCTAGATTGAACTTGTGCATGCTCAATTTAAA</genome_strand>
        <mrna_strand>ATGCTTCACCTGCTTTGTTTTTTCCTTGTGTGAACAAAGAGCTTTGAATTTTCTCTTTGATTCTCAAAATTCATCAAATCTTTGAGCTTGAAATCACCTCAAGAACCCAAAAAACTCATGTCTTTTCTCAGTCAACTCATCAACCAACTGCCAACCCAGCAAGGATTTGTATAATCATTGCTGTTTGTCCATCTGTGTGTGTCTCTAAATTTGATTAAAGATTCCATTTTTCCATCTGGGTGTCTCTCAATTTGATAAAAAAATCCATTTTTCCATCTGGGTTTTGCTCAATTTGGTTAAAGAATCGGTTTTTCCAGCTGGGTTTTGCTCAATTTGGTTAAAGAATCGATTTTATCCAGCTGGGGTTTGCTCAATTTGGTTAAAGAATCGATTTTTGTGCATATGGGTCATCAGAAAGAGGAATTAATCAACGAGCTGACGGAGTTAATCGATGGGGTTTCTGGTTTACCGGAGTGCCGGTCAGTGTCTAAGAGGATGTACAGTAATTTGGTGAGAAGAGTGAAGCTTTTGAGTCCTTTAGTTGAGGATTTGAAAGATAGTGATGGTGTTGAGGTTGGAGATGATGTTGTTCATGGGCTTGAGTTGTTGAAAATTGCTCTTATTTCAGGTTTGGAGCTTCTCAAATCTGTAAATGAAGGCAGTAAGATTCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTACAGATCGAGAACATATCATCAAGGTTTCTAGATGTGACAGAGCAAATTGAAGATGCACTAAGCCACATTCCTTACAATAAGCTTGATTTATCTGAGGAAGTTCGAGAACAA.......................................................................................ATTGAACTTGTGCATGCTCAATTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332410" ref_strand="+" ref_description="SGN-U332410        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT3G54850.1 | Symbol: None | armadillo/beta-catenin repeat family protein / U-box domain-containing family protein, contains Pfam domain, PF00514: Armadillo/beta-catenin-like repeats and Pfam, PF04564: U-box domain | chr3:20332409-20334998 FORWARD | Aliases: F28P10.170 (evalue: 1e-86, score=315) genbank/nr: gi|22331792|ref|NP_191045.2| armadillo repeat containing protein [Arabidopsis thaliana] gi|17529090|gb|AAL38755.1| unknown protein [Arabidopsis thaliana] gi|20465441|gb|AAM20180.1| unknown protein [Arabidopsis thaliana](evalue: 9e-85, score=315)">
      <seq>ctaaaaaccaaggaacttgtaggaataaaaggactggagctggtggttcggactgtgatcgtgttgctattgatgcgttattacaaaaacttgctaatggtaattcggagcagcaaagagcagctgccggtgagctccgtttgctagcaaaaagaaatgctgataacagagtctgcattgctggagccggggcaattcctctacttgttgaactactatcatcatcagattctcgtactcaggagcatgctgtcaccgcacttcttaacctatccataaatgaaagtaacaagggaactatcgtaaatgctggtgctatacctgatatagtagatgtactaagaaatggaagcatggaagcaagggaaaatgcagccgctacccttttcagtttatcagtagttgatgaaaacaaagtggcaataggagcagctggtgctatcccagcgctgatcgatttgctctgtcatggaaccccaaggggaaaaaaggacgctgccactgctatattcaacctctcaatctatcaaggaaacaaagtcagggcagtacgggcaggaattgttccaccactagtaagattactcaaggatcccgggggtggaatgatggatgaagcacttgcgatattggcaatactagcaagtcatcangagggtaaggcagctattgctcagtctgagccacttcccgtcttagttcangtaattaggacaggttctcctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0096D22.2" temp_strand="+" temp_description="C11HBa0096D22.2  AC212434.2 htgs_phase:3 submitted_to_sgn_as:gi|166159192|gb|AC212434.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence">
        <position start="11523" stop="12849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11823" g_stop="12549" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0096D22.2" gen_strand="+" ref_id="SGN-U332410" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0096D22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11823" e_stop="12549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAAACCAAGGAACTTGTAGGAATAAAAGGACTGGAGCTGGTGGTTCGGACTGTGATCGTGTTGCTATTGATGCGTTATTACAAAAACTTGCTAATGGTAATTCGGAGCAGCAAAGAGCAGCTGCCGGTGAGCTCCGTTTGCTAGCAAAAAGAAATGCTGATAACAGAGTCTGCATTGCTGGAGCCGGGGCAATTCCTCTACTTGTTGAACTACTATCATCATCAGATTCTCGTACTCAGGAGCATGCTGTCACCGCACTTCTTAACCTATCCATAAATGAAAGTAACAAGGGAACTATCGTAAATGCTGGTGCTATACCTGATATAGTAGATGTACTAAGAAATGGAAGCATGGAAGCAAGGGAAAATGCAGCCGCTACCCTTTTCAGTTTATCAGTAGTTGATGAAAACAAAGTGGCAATAGGAGCAGCTGGTGCTATCCCAGCGCTGATCGATTTGCTCTGTCATGGAACCCCAAGGGGAAAAAAGGACGCTGCCACTGCTATATTCAACCTCTCAATCTATCAAGGAAACAAAGTCAGGGCAGTACGGGCAGGAATTGTTCCACCACTAGTAAGATTACTCAAGGATCCCGGGGGTGGAATGATGGATGAAGCACTTGCGATATTGGCAATACTAGCAAGTCATCAGGAGGGTAAGGCAGCTATTGCTCAGTCTGAGCCACTTCCCGTCTTAGTTCAGGTAATTAGGACAGGTTCTCCTCG</genome_strand>
        <mrna_strand>CTAAAAACCAAGGAACTTGTAGGAATAAAAGGACTGGAGCTGGTGGTTCGGACTGTGATCGTGTTGCTATTGATGCGTTATTACAAAAACTTGCTAATGGTAATTCGGAGCAGCAAAGAGCAGCTGCCGGTGAGCTCCGTTTGCTAGCAAAAAGAAATGCTGATAACAGAGTCTGCATTGCTGGAGCCGGGGCAATTCCTCTACTTGTTGAACTACTATCATCATCAGATTCTCGTACTCAGGAGCATGCTGTCACCGCACTTCTTAACCTATCCATAAATGAAAGTAACAAGGGAACTATCGTAAATGCTGGTGCTATACCTGATATAGTAGATGTACTAAGAAATGGAAGCATGGAAGCAAGGGAAAATGCAGCCGCTACCCTTTTCAGTTTATCAGTAGTTGATGAAAACAAAGTGGCAATAGGAGCAGCTGGTGCTATCCCAGCGCTGATCGATTTGCTCTGTCATGGAACCCCAAGGGGAAAAAAGGACGCTGCCACTGCTATATTCAACCTCTCAATCTATCAAGGAAACAAAGTCAGGGCAGTACGGGCAGGAATTGTTCCACCACTAGTAAGATTACTCAAGGATCCCGGGGGTGGAATGATGGATGAAGCACTTGCGATATTGGCAATACTAGCAAGTCATCANGAGGGTAAGGCAGCTATTGCTCAGTCTGAGCCACTTCCCGTCTTAGTTCANGTAATTAGGACAGGTTCTCCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321518" ref_strand="+" ref_description="SGN-U321518        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion. | chr3:3216374-3219275 FORWARD | Aliases: F14P13.3(evalue: 5e-162, score=567) genbank/nr: gi|15228273|ref|NP_187648.1| glycerol-3-phosphate dehydrogenase, putative [Arabidopsis thaliana] gi|6056190|gb|AAF02807.1| putative glycerol-3-phosphate dehydrogenase [Arabidopsis thaliana] gi|17380778|gb|AAL36219.1| putative glycerol-3-phosphate dehydrogenase [Arabidopsis thaliana] gi|20465281|gb|AAM20004.1| putative glycerol-3-phosphate dehydrogenase [Arabidopsis thaliana](evalue: 4e-160, score=567)">
      <seq>caatcttcaaaaaaattaattacctccatcttcggttcttctacctacaccaccgtaatggccacctcaattcgcctccgtcgtctcggcgctatcgccgccgttgccggaggagcatacacaattgtacggcagccttcattctcctcaaacgatcgcggggacaagttaagcgcactcgagacttttcgccggaaaatttctgatcctttcgccgtcgtaccaccacggaatactcaggaagcggctttgatcggttctagtttggctaatcctcttgatatacttgttgttggaggcggtgctaccggttgcggtgttgcacttgatgctgcgacgcgaggactccgggttggattggttgagcgagaggattttgcatctggtacttcttcaaggtctactaagctaattcatggaggagttcgctatttggagaaagcagttttcaacttggattacgggcagttaaagctagttttccatgcccttgaggagcgtaaacagctcattgaaaatgctccacacctttgtcatgctttaccgtgcatgactccgtgctttgattggtttgacgctatctactactgggctggcctgaaaatgtatgatttggttgcaggtcgacacctactgcatttgtctaggtattattctgcacaagagtctgttgaattgtttcctaccctcgcacgaaatggtaaagataaaactctgaagggaactgtggtatattacgatggacaaatgaatgactcacgcgtcaatgttgcattagcatgctctgctgctttggctggtgcagctgtgcttaaccatgcagaagtggtatcccttctcaaagatgagggtgatggtagaataattggtgcacgtattcggaataatttatcagggaaggagtttgatgcatatgcaaaagttgttgttaacgctgccgggcctttttgtgattctgtacggacgttagctgataaagatgcaaaacccatgatttgtcccagtagtggtgtacatattatacttcctgattattattctccagacgggatgggcttgattgtccctaaaactaaggatggtcgagtggtctttatgcttccatggttgggcagaacagtagctggtaccactgattcaaacaccagcataacgatgctgccagaacctcatgagaatgagatcgaattcattttggatgccatctctgattatcttaatgttaaggtgtgttgatttctagcaatcctgacatttattgtttttcttttaatatcatagtgcctctaatataaatccctgtaagtcaaatatttatataatcattattcctcattaggcatctgaaaaaaaggtctatattgtgaccaacttttgcctcttgatctctgttttggtttgatattgaattcaaatgttactatcctgatcaaaaaaaaaaaaaaaaaaaaaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0096D22-iU1Hp/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0096D22.2" temp_strand="+" temp_description="C11HBa0096D22.2  AC212434.2 htgs_phase:3 submitted_to_sgn_as:gi|166159192|gb|AC212434.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0096D22, complete sequence">
        <position start="15455" stop="21583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15755" g_stop="16175" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16176" i_stop="19412" i_length="3237">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19413" g_stop="19886" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="895" r_length="474" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19887" i_stop="20738" i_length="852">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20739" g_stop="21275" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="896" r_stop="1432" r_length="537" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1433" polyA_stop="1465"/>
      <MATCH_line gen_id="C11HBa0096D22.2" gen_strand="+" ref_id="SGN-U321518" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1432</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0096D22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15755" e_stop="16175"/>
          <exon e_start="19413" e_stop="19886"/>
          <exon e_start="20739" e_stop="21275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTTCAAAAAAATTAATTACCTCCATCTTCGGTTCTTCTACCTACACCACCGTAATGGCCACCTCAATTCGCCTCCGTCGTCTCGGCGCTATCGCCGCCGTTGCCGGAGGAGCATACACAATTGTACGGCAGCCTTCATTCTCCTCAAACGATCGCGGGGACAAGTTAAGCGCACTCGAGACTTTTCGCCGGAAAATTTCTGATCCTTTCGCCGTCGTACCACCACGGAATACTCAGGAAGCGGCTTTGATCGGTTCTAGTTTGGCTAATCCTCTTGATATACTTGTTGTTGGAGGCGGTGCTACCGGTTGCGGTGTTGCACTTGATGCTGCGACGCGAGGACTCCGGGTTGGATTGGTTGAGCGAGAGGATTTTGCATCTGGTACTTCTTCAAGGTCTACTAAGCTAATTCATGGAGGTTAGTTAGAATTTAAATTTTTCATCAGTTTTTGTTTATGTACGATAGGTGGTTTTGGTATAACTGGCTTCATGTTAATTTAATGCATTGAAGTAAAAGAATGATCACATCCAGCTGTGAGAAATAGTCGAATTACAGGAATTTTTGTATGGATATAGTTTATTGGAACTGAACTGTGATTGAGGTGCAGTGGTAGTAAGGTAAGCAAATTGTCTTTTTAGTCAAGGGATTGTGGTGGGAGGTGGCAAGTATCCCGTGGAGTTAGTCGAGGACACCATGTTCATGAAAAAAGATATCTTAGGGATTGAGGAGTGTGTTGAGCATTATTTTCCCTTTTATGCAAGTGGACATAGTTGCAGAACTATATACTAGATGGAACTTTAAAATTGGGAATCTTGTAGCAGCATTAGTTTTGGGACACTATATTTATCGTACCCTATATATGCTTGTTAGTGGCACTAATAACAAGTTCAAAATGAAATCTTTAAATTGAGTTAGTCTGGTTTACGAAAACTTTCCTTTAGAATCTTTTTGTCATTGTTGTTTAGTCATAAGGAAAAGGAATCTTTTTGTCTATGTTTCTAAAACTCTGGGAGCGAGCCTTGATGTGGAGGGATCTTGATGTTAGAAACATTGTTACTCGAGGCACTATTTTTGTGTGTGACTGAGTTGGCAATGTCACAGCAAATTCGGATTGAAGAGAAAGGCCTTGTGAGAGAATAATTGAAGTATTAGAAAGCTTCTCTTATCATTTTAGAATCTCAAGAGTTTTAGCAGAAGGAAAACTAAAATCCTCAATTTATTATGCTCAATAATTACTTGGCTGCGATGATTTCTTAATATTTAATCCAAGTGATTATTGCCTCCCATTTCATTCCTAAGGGAATCGATCTTGTTGATTTTGGGCTCCTTGCATAGATATCATCAAAATCAAAGTCATCACGAATTTTTATAGTCAATATTTTAACAATATCATACCATGGTGGTGGCAAAATTTTGTTCTTAGTATGCAACTGGATCAACACAATCATCTACAGAACTATCCCAACCATCTATACACAAGGGCATTTCCTCTTTTAAGAAGTCAAATATGTTGCAATCCCAAACTAATTGGGGACAACTATAGCAATCATCTGGATCCACACAGAAAAGCAGACGATTGAAACAAAAAGACCTTTTGCTGTTCTGGATCAATCTTTTTACCCAATAAATGCACAATAGTGTGATTTCTGCTACTCTGCAGGTAGCGAACCATATTAGAGCTTTAGAGAAATACCAAATCTATGGCCCAAACTTAGAATGCAAACAGCAAAAAATAATTGGGATATAGCTTTTCTTTCATTTCCTTCTCAGCTACCCTTAAATCCTTAGATAAAATCCCCTTTAACTATCCTCTCTATGTGTCTACTGAATGCCTCTCGTATGAAAAGAAACAGTGACAAGATAAAGGGTCTCCAGCTACCCCCCCTTGAAGGAGCTTAACTACTAAAGAAACCTCATGGAGTAGCATTGGATAAGATGGAAAATTTCATAGTACCGGATGAAATATTTCACCATGATGGTTCATTTTCCATGTGCACCCTCTTTGTTGATGCTCCATTCTCACAAATATCTAGATTAGAAACTCAGATAAATGATCCGTTAGCTTCCGAGGTATCCAAGTTGCATGATAATCCTTACTCTATGCTTCTTAATATTAAACCCACTGGCTCAACTGCACTGCACAACTCATGCCTCATGCAGGATAATCTCTCCAAAAAGATTCCAGCTTTCTAACCGATGCTATTTCAGCCACGAGCACAGAAAGTGTCAACCACTTCCTACTGCACTGCCCAGCTGCCTCGGACCTCTGAAATATATTTTGTTGCTTTTTTGGTCTTTCCTGGGTCATGCGGTTCTCTGTTAGGGATGCTCTTAAAAGTTGGAGTTCACGGGAAGTTGATAAAAGTCATCAAGAGTATGTCGATGATGATCCATGGTGCTATCTTTTGGTGTTTATGGACAGAGAGGAACAAAAGATGTTTTGATGGAATTTCAACTTCTAGAAATCTTGTATCGAGGCAGATGTCTAGTTTGCTTTCTTAGTTGGTCCAAATTGACCCCTGTAAATAATTTAGAACTCTTCTTGGATTTTGTTAGCTCTATAGTTCAGAAAGAGGCTACAAATCCTTTTTTTGTGAGCTTAACTGATCTATCCTTGTAAAGCTTGCATCTTCTTGATGCCTTTAAATGAATCTACTTCATCAAAAAAATTGCTATCAGTATAGCATCAAGGATTCATCTTCTTTCTTCAAAGGCATCCTGAAATATAATATGGGATTACCCATCATCTTTAAGTCTCCCTGCCAATACATTTGCTTTTACTTTGTATGTACTCCAGAACAAACTTATAGGCCAAAAATCTCGATGTATCCTTTGCTCTGGATTGTCTTTGGGATAGGTTCAATGAAAGAACAGTCAAGACTCTTTTCAAATGACACTGCTTGGTATAAGATGCTTCAAACATTTATCGATGCCGCAGGACAATGTCTGTAAAAGCTTTGCCATAGGTGCTGTGTCTCCACGCAATTTTCATTAGTCATTACCCATTAGCCCTTTAGAAATCCTAACACTAGCAGATTAATAGGTCTGCATCTTGACCAGGGAATTTGGAGAAGGCCAAAAAAAAAGAGAAGAAAATTAAGATACTCACATAAAATTATATTATTTGTCTTCTATAAGATCACTCCTAAGATTTGAATGCTATATCCAGTGCTCGACAGGCTAAATTGTTATATTTTGTACTAACTACTACCTTAAAAGCTTAGTGGTTGAGAATGGAGCACTTGACCCTTAAAATGATGTGAAGAACTGCACTGAGAAATTTTAGAGCCCTTTTGATTTCTTCATTGAGGCACCTCCATTTCAATTTATTTGTCTTAGTTCCTTTTTAATTCCTTTAAAAAAGAACGCCTCTTTCCATTTTTAGTAACTCTTTAATTCTAATTTTATATATGACATGTTTAAGACCACGGTCTTAAAGAGGAATTTTCGATACATTCTACATATCTTTCATTTAAGACCACAAGATTCAAAAGTCTTCTTTACTTTCTTAAATTGTGTATCAAGTCAAAACAGGCAATCAAATTGAAATGGAGGGAGTAGTTAGATATTTGCTTGAAGCTTTCCTTCATTTGTCACAGTTATCTTCTTTTATCTAAGACGTGCAAACTGCTTATACTAAGATTCTTGTTTCAGGAGTTCGCTATTTGGAGAAAGCAGTTTTCAACTTGGATTACGGGCAGTTAAAGCTAGTTTTCCATGCCCTTGAGGAGCGTAAACAGCTCATTGAAAATGCTCCACACCTTTGTCATGCTTTACCGTGCATGACTCCGTGCTTTGATTGGTTTGACGCTATCTACTACTGGGCTGGCCTGAAAATGTATGATTTGGTTGCAGGTCGACACCTACTGCATTTGTCTAGGTATTATTCTGCACAAGAGTCTGTTGAATTGTTTCCTACCCTCGCACGAAATGGTAAAGATAAAACTCTGAAGGGAACTGTGGTATATTACGATGGACAAATGAATGACTCACGCGTCAATGTTGCATTAGCATGCTCTGCTGCTTTGGCTGGTGCAGCTGTGCTTAACCATGCAGAAGTGGTATCCCTTCTCAAAGATGAGGGTGATGGTAGAATAATTGGTGCACGTATTCGGAATAATTTATCAGGTACTTCATGAATTTTATTGTAGAATTTGTGTTCCTACTCAGTTCCGTGGTTAAAGTTAGCTTGTAATCCTGGTGGAATGATTAAGGTTGATAAATAGAGTTCCAATATCATGTGCTGTACCACTTGCTCCTAGAAGTCCCATTATATATCTCCATGTATGTACAATTATCTCCATGGATGTGTCCCACCCATTGTGGATTGTAAGTGCCCCACCTCATCATTCTTCTGATGATGATTTTTTGTGAATACAAAGTTACTCCTCAAAAAAAAAATATATGTACAATTATCTGTTTTGCTCGTCTTTGAACCTTTGTCATTTCTTCGAAATGTTTGTCAGTGACATGCAGGATCTTTTTAAGTGTAGTGATTTCCGAGGTTTTGAAAATTTTGAACTTTCTCTTAAAATATTTTTGTTATGGTCCACGGCTGGACTTATGAGTGAAGAGTCTGTTCTAGTATCAAAGATTGGTAATTGATTACCAACCACATAACCAGATGCTCCTGACATAATTTTTACAAGTTGCTTGGCTTAGAGTTATCATGTTTCAAAATATGTATCTGGTCTTATTTGAATTTTCTTGCCATATTTTTGTGGAGTCAAAATATTTGCGTAGAGGTGTTATTGACAAACATTCCAAAATTGGCATAAATCTTTTCGAGTTGGGTGGCAATATCAACTTTAAACAAGCATTTAATCCAACAAAGGCAAGTCACTCTGGCATGAATCTCTGTTCAACTTTTAGACGATTGGAAAATGCTTTGAGTATTATTTATTAATTTCTCCTTTAATCGTTTGCTCCTTTAGTTCATGTCAGTTATCTGCCTCTAAGTTCTCACTCCTTTTCTGACAGGGAAGGAGTTTGATGCATATGCAAAAGTTGTTGTTAACGCTGCCGGGCCTTTTTGTGATTCTGTACGGACGTTAGCTGATAAAGATGCAAAACCCATGATTTGTCCCAGTAGTGGTGTACATATTATACTTCCTGATTATTATTCTCCAGACGGGATGGGCTTGATTGTCCCTAAAACTAAGGATGGTCGAGTGGTCTTTATGCTTCCATGGTTGGGCAGAACAGTAGCTGGTACCACTGATTCAAACACCAGCATAACGATGCTGCCAGAACCTCATGAGAATGAGATCGAATTCATTTTGGATGCCATCTCTGATTATCTTAATGTTAAGGTGTGTTGATTTCTAGCAATCCTGACATTTATTGTTTTTCTTTTAATATCATAGTGCCTCTAATATAAATCCCTGTAAGTCAAATATTTATATAATCATTATTCCTCATTAGGCATCTGAAAAAAAGGTCTATATTGTGACCAACTTTTGCCTCTTGATCTCTGTTTTGGTTTGATATTGAATTCAAATGTTACTATCCTGATCA</genome_strand>
        <mrna_strand>CAATCTTCAAAAAAATTAATTACCTCCATCTTCGGTTCTTCTACCTACACCACCGTAATGGCCACCTCAATTCGCCTCCGTCGTCTCGGCGCTATCGCCGCCGTTGCCGGAGGAGCATACACAATTGTACGGCAGCCTTCATTCTCCTCAAACGATCGCGGGGACAAGTTAAGCGCACTCGAGACTTTTCGCCGGAAAATTTCTGATCCTTTCGCCGTCGTACCACCACGGAATACTCAGGAAGCGGCTTTGATCGGTTCTAGTTTGGCTAATCCTCTTGATATACTTGTTGTTGGAGGCGGTGCTACCGGTTGCGGTGTTGCACTTGATGCTGCGACGCGAGGACTCCGGGTTGGATTGGTTGAGCGAGAGGATTTTGCATCTGGTACTTCTTCAAGGTCTACTAAGCTAATTCATGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCGCTATTTGGAGAAAGCAGTTTTCAACTTGGATTACGGGCAGTTAAAGCTAGTTTTCCATGCCCTTGAGGAGCGTAAACAGCTCATTGAAAATGCTCCACACCTTTGTCATGCTTTACCGTGCATGACTCCGTGCTTTGATTGGTTTGACGCTATCTACTACTGGGCTGGCCTGAAAATGTATGATTTGGTTGCAGGTCGACACCTACTGCATTTGTCTAGGTATTATTCTGCACAAGAGTCTGTTGAATTGTTTCCTACCCTCGCACGAAATGGTAAAGATAAAACTCTGAAGGGAACTGTGGTATATTACGATGGACAAATGAATGACTCACGCGTCAATGTTGCATTAGCATGCTCTGCTGCTTTGGCTGGTGCAGCTGTGCTTAACCATGCAGAAGTGGTATCCCTTCTCAAAGATGAGGGTGATGGTAGAATAATTGGTGCACGTATTCGGAATAATTTATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGGAGTTTGATGCATATGCAAAAGTTGTTGTTAACGCTGCCGGGCCTTTTTGTGATTCTGTACGGACGTTAGCTGATAAAGATGCAAAACCCATGATTTGTCCCAGTAGTGGTGTACATATTATACTTCCTGATTATTATTCTCCAGACGGGATGGGCTTGATTGTCCCTAAAACTAAGGATGGTCGAGTGGTCTTTATGCTTCCATGGTTGGGCAGAACAGTAGCTGGTACCACTGATTCAAACACCAGCATAACGATGCTGCCAGAACCTCATGAGAATGAGATCGAATTCATTTTGGATGCCATCTCTGATTATCTTAATGTTAAGGTGTGTTGATTTCTAGCAATCCTGACATTTATTGTTTTTCTTTTAATATCATAGTGCCTCTAATATAAATCCCTGTAAGTCAAATATTTATATAATCATTATTCCTCATTAGGCATCTGAAAAAAAGGTCTATATTGTGACCAACTTTTGCCTCTTGATCTCTGTTTTGGTTTGATATTGAATTCAAATGTTACTATCCTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="7706" PGL_stop="7370"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7706" e_stop="7370"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="7706" e_stop="7370" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7706" stop="7370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTTACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCAGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCTCTAAATCTACGTGTCGGTTCGTGACACCCGATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  T  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  S  T  I  S  F  T  I  T  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  S  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  H  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  R  V  G  S  *  H  P  I  </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  K  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  A  L  Y  H  L  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  H  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  Q  Y  V  T  L  R  S  L  I  F  I  N  P  L  V  S  V  R  D  T  P  I  L  *  I  Y  V  S  V  R  D  T  R  S </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  N  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  H  Y  I  I  Y  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  S  T  *  H  S  A  P  S  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  S  K  S  T  C  R  F  V  T  P  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0096D22.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="9661" PGL_stop="11169"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9661" e_stop="10335"/>
            <exon e_start="10939" e_stop="11055"/>
            <exon e_start="11143" e_stop="11169"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9661" e_stop="10335" e_length="675"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="10336" i_stop="10938" i_length="603"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10939" e_stop="11055" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="11056" i_stop="11142" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11143" e_stop="11169" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9661" stop="10335"/>
              <exon start="10939" stop="11055"/>
              <exon start="11143" stop="11169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328660" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGCTTCACCTGCTTTGTTTTTTCCTTGTGTGAACAAAGAGCTTTGAATTTTCTCTTTGATTCTCAAAATTCATCAAATCTTTGAGCTTGAAATCACCTCAAGAACCCAAAAAACTCATGTCTTTTCTCAGTCAACTCATCAACCAACTGCCAACCCAGCAAGGATTTGTATAATCATTGCTGTTTGTCCATCTGTGTGTGTCTCTAAATTTGATTAAAGATTCCATTTTTCCATCTGGGTGTCTCTCAATTTGATAAAAAAATCCATTTTTCCATCTGGGTTTTGCTCAATTTGGTTAAAGAATCGGTTTTTCCAGCTGGGTTTTGCTCAATTTGGTTAAAGAATCGATTTTATCCAGCTGGGGTTTGCTCAATTTGGTTAAAGAATCGATTTTTGTGCATATGGGTCATCAGAAAGAGGAATTAATCAACGAGCTGACGGAGTTAATCGATGGGGTTTCTGGTTTACCGGAGTGCCGGTCAGTGTCTAAGAGGATGTACAGTAATTTGGTGAGAAGAGTGAAGCTTTTGAGTCCTTTAGTTGAGGATTTGAAAGATAGTGATGGTGTTGAGGTTGGAGATGATGTTGTTCATGGGCTTGAGTTGTTGAAAATTGCTCTTATTTCAGGTTTGGAGCTTCTCAAATCTGTAAATGAAGGCAGTAAGATTCTTCAG : GCTTTACAGATCGAGAACATATCATCAAGGTTTCTAGATGTGACAGAGCAAATTGAAGATGCACTAAGCCACATTCCTTACAATAAGCTTGATTTATCTGAGGAAGTTCGAGAACAA : ATTGAACTTGTGCATGCTCAATTTAAA</gDNA_template>
            <first_frame> M  L  H  L  L  C  F  F  L  V  *  T  K  S  F  E  F  S  L  *  F  S  K  F  I  K  S  L  S  L  K  S  P  Q  E  P  K  K  L  M  S  F  L  S  Q  L  I  N  Q  L  P  T  Q  Q  G  F  V  *  S  L  L  F  V  H  L  C  V  S  L  N  L  I  K  D  S  I  F  P  S  G  C  L  S  I  *  *  K  N  P  F  F  H  L  G  F  A  Q  F  G  *  R  I  G  F  S  S  W  V  L  L  N  L  V  K  E  S  I  L  S  S  W  G  L  L  N  L  V  K  E  S  I  F  V  H  M  G  H  Q  K  E  E  L  I  N  E  L  T  E  L  I  D  G  V  S  G  L  P  E  C  R  S  V  S  K  R  M  Y  S  N  L  V  R  R  V  K  L  L  S  P  L  V  E  D  L  K  D  S  D  G  V  E  V  G  D  D  V  V  H  G  L  E  L  L  K  I  A  L  I  S  G  L  E  L  L  K  S  V  N  E  G  S  K  I  L  Q  :  A  L  Q  I  E  N  I  S  S  R  F  L  D  V  T  E  Q  I  E  D  A  L  S  H  I  P  Y  N  K  L  D  L  S  E  E  V  R  E  Q  :  I  E  L  V  H  A  Q  F  K </first_frame>
            <second_frame>  C  F  T  C  F  V  F  S  L  C  E  Q  R  A  L  N  F  L  F  D  S  Q  N  S  S  N  L  *  A  *  N  H  L  K  N  P  K  N  S  C  L  F  S  V  N  S  S  T  N  C  Q  P  S  K  D  L  Y  N  H  C  C  L  S  I  C  V  C  L  *  I  *  L  K  I  P  F  F  H  L  G  V  S  Q  F  D  K  K  I  H  F  S  I  W  V  L  L  N  L  V  K  E  S  V  F  P  A  G  F  C  S  I  W  L  K  N  R  F  Y  P  A  G  V  C  S  I  W  L  K  N  R  F  L  C  I  W  V  I  R  K  R  N  *  S  T  S  *  R  S  *  S  M  G  F  L  V  Y  R  S  A  G  Q  C  L  R  G  C  T  V  I  W  *  E  E  *  S  F  *  V  L  *  L  R  I  *  K  I  V  M  V  L  R  L  E  M  M  L  F  M  G  L  S  C  *  K  L  L  L  F  Q  V  W  S  F  S  N  L  *  M  K  A  V  R  F  F  R :   L  Y  R  S  R  T  Y  H  Q  G  F  *  M  *  Q  S  K  L  K  M  H  *  A  T  F  L  T  I  S  L  I  Y  L  R  K  F  E  N  K :   L  N  L  C  M  L  N  L   </second_frame>
            <third_frame>   A  S  P  A  L  F  F  P  C  V  N  K  E  L  *  I  F  S  L  I  L  K  I  H  Q  I  F  E  L  E  I  T  S  R  T  Q  K  T  H  V  F  S  Q  S  T  H  Q  P  T  A  N  P  A  R  I  C  I  I  I  A  V  C  P  S  V  C  V  S  K  F  D  *  R  F  H  F  S  I  W  V  S  L  N  L  I  K  K  S  I  F  P  S  G  F  C  S  I  W  L  K  N  R  F  F  Q  L  G  F  A  Q  F  G  *  R  I  D  F  I  Q  L  G  F  A  Q  F  G  *  R  I  D  F  C  A  Y  G  S  S  E  R  G  I  N  Q  R  A  D  G  V  N  R  W  G  F  W  F  T  G  V  P  V  S  V  *  E  D  V  Q  *  F  G  E  K  S  E  A  F  E  S  F  S  *  G  F  E  R  *  *  W  C  *  G  W  R  *  C  C  S  W  A  *  V  V  E  N  C  S  Y  F  R  F  G  A  S  Q  I  C  K  *  R  Q  *  D  S  S   : G  F  T  D  R  E  H  I  I  K  V  S  R  C  D  R  A  N  *  R  C  T  K  P  H  S  L  Q  *  A  *  F  I  *  G  S  S  R  T   : N  *  T  C  A  C  S  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0096D22.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9961" stop="10335"/>
                    <exon start="10939" stop="11055"/>
                    <exon start="11143" stop="11169"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIGFSSWVLLNLVKESILSSWGLLNLVKESIFVHMGHQKEELINELTELIDGVSGLPECRSVSKRMYSNLVRRVKLLSPLVEDLKDSDGVEVGDDVVHGLELLKIALISGLELLKSVNEGSKILQALQIENISSRFLDVTEQIEDALSHIPYNKLDLSEEVREQIELVHAQFK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="11823" PGL_stop="12549"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11823" e_stop="12549"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="11823" e_stop="12549" e_length="727"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11823" stop="12549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332410" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAAAAACCAAGGAACTTGTAGGAATAAAAGGACTGGAGCTGGTGGTTCGGACTGTGATCGTGTTGCTATTGATGCGTTATTACAAAAACTTGCTAATGGTAATTCGGAGCAGCAAAGAGCAGCTGCCGGTGAGCTCCGTTTGCTAGCAAAAAGAAATGCTGATAACAGAGTCTGCATTGCTGGAGCCGGGGCAATTCCTCTACTTGTTGAACTACTATCATCATCAGATTCTCGTACTCAGGAGCATGCTGTCACCGCACTTCTTAACCTATCCATAAATGAAAGTAACAAGGGAACTATCGTAAATGCTGGTGCTATACCTGATATAGTAGATGTACTAAGAAATGGAAGCATGGAAGCAAGGGAAAATGCAGCCGCTACCCTTTTCAGTTTATCAGTAGTTGATGAAAACAAAGTGGCAATAGGAGCAGCTGGTGCTATCCCAGCGCTGATCGATTTGCTCTGTCATGGAACCCCAAGGGGAAAAAAGGACGCTGCCACTGCTATATTCAACCTCTCAATCTATCAAGGAAACAAAGTCAGGGCAGTACGGGCAGGAATTGTTCCACCACTAGTAAGATTACTCAAGGATCCCGGGGGTGGAATGATGGATGAAGCACTTGCGATATTGGCAATACTAGCAAGTCATCAGGAGGGTAAGGCAGCTATTGCTCAGTCTGAGCCACTTCCCGTCTTAGTTCAGGTAATTAGGACAGGTTCTCCTCG</gDNA_template>
            <first_frame> L  K  T  K  E  L  V  G  I  K  G  L  E  L  V  V  R  T  V  I  V  L  L  L  M  R  Y  Y  K  N  L  L  M  V  I  R  S  S  K  E  Q  L  P  V  S  S  V  C  *  Q  K  E  M  L  I  T  E  S  A  L  L  E  P  G  Q  F  L  Y  L  L  N  Y  Y  H  H  Q  I  L  V  L  R  S  M  L  S  P  H  F  L  T  Y  P  *  M  K  V  T  R  E  L  S  *  M  L  V  L  Y  L  I  *  *  M  Y  *  E  M  E  A  W  K  Q  G  K  M  Q  P  L  P  F  S  V  Y  Q  *  L  M  K  T  K  W  Q  *  E  Q  L  V  L  S  Q  R  *  S  I  C  S  V  M  E  P  Q  G  E  K  R  T  L  P  L  L  Y  S  T  S  Q  S  I  K  E  T  K  S  G  Q  Y  G  Q  E  L  F  H  H  *  *  D  Y  S  R  I  P  G  V  E  *  W  M  K  H  L  R  Y  W  Q  Y  *  Q  V  I  R  R  V  R  Q  L  L  L  S  L  S  H  F  P  S  *  F  R  *  L  G  Q  V  L  L  </first_frame>
            <second_frame>  *  K  P  R  N  L  *  E  *  K  D  W  S  W  W  F  G  L  *  S  C  C  Y  *  C  V  I  T  K  T  C  *  W  *  F  G  A  A  K  S  S  C  R  *  A  P  F  A  S  K  K  K  C  *  *  Q  S  L  H  C  W  S  R  G  N  S  S  T  C  *  T  T  I  I  I  R  F  S  Y  S  G  A  C  C  H  R  T  S  *  P  I  H  K  *  K  *  Q  G  N  Y  R  K  C  W  C  Y  T  *  Y  S  R  C  T  K  K  W  K  H  G  S  K  G  K  C  S  R  Y  P  F  Q  F  I  S  S  *  *  K  Q  S  G  N  R  S  S  W  C  Y  P  S  A  D  R  F  A  L  S  W  N  P  K  G  K  K  G  R  C  H  C  Y  I  Q  P  L  N  L  S  R  K  Q  S  Q  G  S  T  G  R  N  C  S  T  T  S  K  I  T  Q  G  S  R  G  W  N  D  G  *  S  T  C  D  I  G  N  T  S  K  S  S  G  G  *  G  S  Y  C  S  V  *  A  T  S  R  L  S  S  G  N  *  D  R  F  S  S </second_frame>
            <third_frame>   K  N  Q  G  T  C  R  N  K  R  T  G  A  G  G  S  D  C  D  R  V  A  I  D  A  L  L  Q  K  L  A  N  G  N  S  E  Q  Q  R  A  A  A  G  E  L  R  L  L  A  K  R  N  A  D  N  R  V  C  I  A  G  A  G  A  I  P  L  L  V  E  L  L  S  S  S  D  S  R  T  Q  E  H  A  V  T  A  L  L  N  L  S  I  N  E  S  N  K  G  T  I  V  N  A  G  A  I  P  D  I  V  D  V  L  R  N  G  S  M  E  A  R  E  N  A  A  A  T  L  F  S  L  S  V  V  D  E  N  K  V  A  I  G  A  A  G  A  I  P  A  L  I  D  L  L  C  H  G  T  P  R  G  K  K  D  A  A  T  A  I  F  N  L  S  I  Y  Q  G  N  K  V  R  A  V  R  A  G  I  V  P  P  L  V  R  L  L  K  D  P  G  G  G  M  M  D  E  A  L  A  I  L  A  I  L  A  S  H  Q  E  G  K  A  A  I  A  Q  S  E  P  L  P  V  L  V  Q  V  I  R  T  G  S  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0096D22.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11825" stop="12547"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNQGTCRNKRTGAGGSDCDRVAIDALLQKLANGNSEQQRAAAGELRLLAKRNADNRVCIAGAGAIPLLVELLSSSDSRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLRNGSMEARENAAATLFSLSVVDENKVAIGAAGAIPALIDLLCHGTPRGKKDAATAIFNLSIYQGNKVRAVRAGIVPPLVRLLKDPGGGMMDEALAILAILASHQEGKAAIAQSEPLPVLVQVIRTGSP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="15755" PGL_stop="21275"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15755" e_stop="16175"/>
            <exon e_start="19413" e_stop="19886"/>
            <exon e_start="20739" e_stop="21275"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.836" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15755" e_stop="16175" e_length="421"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.836">
            <gDNA_intron_boundary i_start="16176" i_stop="19412" i_length="3237"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19413" e_stop="19886" e_length="474"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="19887" i_stop="20738" i_length="852"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20739" e_stop="21275" e_length="537"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15755" stop="16175"/>
              <exon start="19413" stop="19886"/>
              <exon start="20739" stop="21275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321518" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATCTTCAAAAAAATTAATTACCTCCATCTTCGGTTCTTCTACCTACACCACCGTAATGGCCACCTCAATTCGCCTCCGTCGTCTCGGCGCTATCGCCGCCGTTGCCGGAGGAGCATACACAATTGTACGGCAGCCTTCATTCTCCTCAAACGATCGCGGGGACAAGTTAAGCGCACTCGAGACTTTTCGCCGGAAAATTTCTGATCCTTTCGCCGTCGTACCACCACGGAATACTCAGGAAGCGGCTTTGATCGGTTCTAGTTTGGCTAATCCTCTTGATATACTTGTTGTTGGAGGCGGTGCTACCGGTTGCGGTGTTGCACTTGATGCTGCGACGCGAGGACTCCGGGTTGGATTGGTTGAGCGAGAGGATTTTGCATCTGGTACTTCTTCAAGGTCTACTAAGCTAATTCATGGAG : GAGTTCGCTATTTGGAGAAAGCAGTTTTCAACTTGGATTACGGGCAGTTAAAGCTAGTTTTCCATGCCCTTGAGGAGCGTAAACAGCTCATTGAAAATGCTCCACACCTTTGTCATGCTTTACCGTGCATGACTCCGTGCTTTGATTGGTTTGACGCTATCTACTACTGGGCTGGCCTGAAAATGTATGATTTGGTTGCAGGTCGACACCTACTGCATTTGTCTAGGTATTATTCTGCACAAGAGTCTGTTGAATTGTTTCCTACCCTCGCACGAAATGGTAAAGATAAAACTCTGAAGGGAACTGTGGTATATTACGATGGACAAATGAATGACTCACGCGTCAATGTTGCATTAGCATGCTCTGCTGCTTTGGCTGGTGCAGCTGTGCTTAACCATGCAGAAGTGGTATCCCTTCTCAAAGATGAGGGTGATGGTAGAATAATTGGTGCACGTATTCGGAATAATTTATCAG : GGAAGGAGTTTGATGCATATGCAAAAGTTGTTGTTAACGCTGCCGGGCCTTTTTGTGATTCTGTACGGACGTTAGCTGATAAAGATGCAAAACCCATGATTTGTCCCAGTAGTGGTGTACATATTATACTTCCTGATTATTATTCTCCAGACGGGATGGGCTTGATTGTCCCTAAAACTAAGGATGGTCGAGTGGTCTTTATGCTTCCATGGTTGGGCAGAACAGTAGCTGGTACCACTGATTCAAACACCAGCATAACGATGCTGCCAGAACCTCATGAGAATGAGATCGAATTCATTTTGGATGCCATCTCTGATTATCTTAATGTTAAGGTGTGTTGATTTCTAGCAATCCTGACATTTATTGTTTTTCTTTTAATATCATAGTGCCTCTAATATAAATCCCTGTAAGTCAAATATTTATATAATCATTATTCCTCATTAGGCATCTGAAAAAAAGGTCTATATTGTGACCAACTTTTGCCTCTTGATCTCTGTTTTGGTTTGATATTGAATTCAAATGTTACTATCCTGATCA</gDNA_template>
            <first_frame> Q  S  S  K  K  L  I  T  S  I  F  G  S  S  T  Y  T  T  V  M  A  T  S  I  R  L  R  R  L  G  A  I  A  A  V  A  G  G  A  Y  T  I  V  R  Q  P  S  F  S  S  N  D  R  G  D  K  L  S  A  L  E  T  F  R  R  K  I  S  D  P  F  A  V  V  P  P  R  N  T  Q  E  A  A  L  I  G  S  S  L  A  N  P  L  D  I  L  V  V  G  G  G  A  T  G  C  G  V  A  L  D  A  A  T  R  G  L  R  V  G  L  V  E  R  E  D  F  A  S  G  T  S  S  R  S  T  K  L  I  H  G   : G  V  R  Y  L  E  K  A  V  F  N  L  D  Y  G  Q  L  K  L  V  F  H  A  L  E  E  R  K  Q  L  I  E  N  A  P  H  L  C  H  A  L  P  C  M  T  P  C  F  D  W  F  D  A  I  Y  Y  W  A  G  L  K  M  Y  D  L  V  A  G  R  H  L  L  H  L  S  R  Y  Y  S  A  Q  E  S  V  E  L  F  P  T  L  A  R  N  G  K  D  K  T  L  K  G  T  V  V  Y  Y  D  G  Q  M  N  D  S  R  V  N  V  A  L  A  C  S  A  A  L  A  G  A  A  V  L  N  H  A  E  V  V  S  L  L  K  D  E  G  D  G  R  I  I  G  A  R  I  R  N  N  L  S   : G  K  E  F  D  A  Y  A  K  V  V  V  N  A  A  G  P  F  C  D  S  V  R  T  L  A  D  K  D  A  K  P  M  I  C  P  S  S  G  V  H  I  I  L  P  D  Y  Y  S  P  D  G  M  G  L  I  V  P  K  T  K  D  G  R  V  V  F  M  L  P  W  L  G  R  T  V  A  G  T  T  D  S  N  T  S  I  T  M  L  P  E  P  H  E  N  E  I  E  F  I  L  D  A  I  S  D  Y  L  N  V  K  V  C  *  F  L  A  I  L  T  F  I  V  F  L  L  I  S  *  C  L  *  Y  K  S  L  *  V  K  Y  L  Y  N  H  Y  S  S  L  G  I  *  K  K  G  L  Y  C  D  Q  L  L  P  L  D  L  C  F  G  L  I  L  N  S  N  V  T  I  L  I  </first_frame>
            <second_frame>  N  L  Q  K  N  *  L  P  P  S  S  V  L  L  P  T  P  P  *  W  P  P  Q  F  A  S  V  V  S  A  L  S  P  P  L  P  E  E  H  T  Q  L  Y  G  S  L  H  S  P  Q  T  I  A  G  T  S  *  A  H  S  R  L  F  A  G  K  F  L  I  L  S  P  S  Y  H  H  G  I  L  R  K  R  L  *  S  V  L  V  W  L  I  L  L  I  Y  L  L  L  E  A  V  L  P  V  A  V  L  H  L  M  L  R  R  E  D  S  G  L  D  W  L  S  E  R  I  L  H  L  V  L  L  Q  G  L  L  S  *  F  M  E  :  E  F  A  I  W  R  K  Q  F  S  T  W  I  T  G  S  *  S  *  F  S  M  P  L  R  S  V  N  S  S  L  K  M  L  H  T  F  V  M  L  Y  R  A  *  L  R  A  L  I  G  L  T  L  S  T  T  G  L  A  *  K  C  M  I  W  L  Q  V  D  T  Y  C  I  C  L  G  I  I  L  H  K  S  L  L  N  C  F  L  P  S  H  E  M  V  K  I  K  L  *  R  E  L  W  Y  I  T  M  D  K  *  M  T  H  A  S  M  L  H  *  H  A  L  L  L  W  L  V  Q  L  C  L  T  M  Q  K  W  Y  P  F  S  K  M  R  V  M  V  E  *  L  V  H  V  F  G  I  I  Y  Q  :  G  R  S  L  M  H  M  Q  K  L  L  L  T  L  P  G  L  F  V  I  L  Y  G  R  *  L  I  K  M  Q  N  P  *  F  V  P  V  V  V  Y  I  L  Y  F  L  I  I  I  L  Q  T  G  W  A  *  L  S  L  K  L  R  M  V  E  W  S  L  C  F  H  G  W  A  E  Q  *  L  V  P  L  I  Q  T  P  A  *  R  C  C  Q  N  L  M  R  M  R  S  N  S  F  W  M  P  S  L  I  I  L  M  L  R  C  V  D  F  *  Q  S  *  H  L  L  F  F  F  *  Y  H  S  A  S  N  I  N  P  C  K  S  N  I  Y  I  I  I  I  P  H  *  A  S  E  K  K  V  Y  I  V  T  N  F  C  L  L  I  S  V  L  V  *  Y  *  I  Q  M  L  L  S  *  S </second_frame>
            <third_frame>   I  F  K  K  I  N  Y  L  H  L  R  F  F  Y  L  H  H  R  N  G  H  L  N  S  P  P  S  S  R  R  Y  R  R  R  C  R  R  S  I  H  N  C  T  A  A  F  I  L  L  K  R  S  R  G  Q  V  K  R  T  R  D  F  S  P  E  N  F  *  S  F  R  R  R  T  T  T  E  Y  S  G  S  G  F  D  R  F  *  F  G  *  S  S  *  Y  T  C  C  W  R  R  C  Y  R  L  R  C  C  T  *  C  C  D  A  R  T  P  G  W  I  G  *  A  R  G  F  C  I  W  Y  F  F  K  V  Y  *  A  N  S  W  R :   S  S  L  F  G  E  S  S  F  Q  L  G  L  R  A  V  K  A  S  F  P  C  P  *  G  A  *  T  A  H  *  K  C  S  T  P  L  S  C  F  T  V  H  D  S  V  L  *  L  V  *  R  Y  L  L  L  G  W  P  E  N  V  *  F  G  C  R  S  T  P  T  A  F  V  *  V  L  F  C  T  R  V  C  *  I  V  S  Y  P  R  T  K  W  *  R  *  N  S  E  G  N  C  G  I  L  R  W  T  N  E  *  L  T  R  Q  C  C  I  S  M  L  C  C  F  G  W  C  S  C  A  *  P  C  R  S  G  I  P  S  Q  R  *  G  *  W  *  N  N  W  C  T  Y  S  E  *  F  I  R :   E  G  V  *  C  I  C  K  S  C  C  *  R  C  R  A  F  L  *  F  C  T  D  V  S  *  *  R  C  K  T  H  D  L  S  Q  *  W  C  T  Y  Y  T  S  *  L  L  F  S  R  R  D  G  L  D  C  P  *  N  *  G  W  S  S  G  L  Y  A  S  M  V  G  Q  N  S  S  W  Y  H  *  F  K  H  Q  H  N  D  A  A  R  T  S  *  E  *  D  R  I  H  F  G  C  H  L  *  L  S  *  C  *  G  V  L  I  S  S  N  P  D  I  Y  C  F  S  F  N  I  I  V  P  L  I  *  I  P  V  S  Q  I  F  I  *  S  L  F  L  I  R  H  L  K  K  R  S  I  L  *  P  T  F  A  S  *  S  L  F  W  F  D  I  E  F  K  C  Y  Y  P  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0096D22.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15755" stop="16175"/>
                    <exon start="19413" stop="19886"/>
                    <exon start="20739" stop="21079"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1233</number_coding_nucleotides>
                  <number_encoded_amino_acids>411</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSSKKLITSIFGSSTYTTVMATSIRLRRLGAIAAVAGGAYTIVRQPSFSSNDRGDKLSALETFRRKISDPFAVVPPRNTQEAALIGSSLANPLDILVVGGGATGCGVALDAATRGLRVGLVEREDFASGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQLIENAPHLCHALPCMTPCFDWFDAIYYWAGLKMYDLVAGRHLLHLSRYYSAQESVELFPTLARNGKDKTLKGTVVYYDGQMNDSRVNVALACSAALAGAAVLNHAEVVSLLKDEGDGRIIGARIRNNLSGKEFDAYAKVVVNAAGPFCDSVRTLADKDAKPMICPSSGVHIILPDYYSPDGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSNTSITMLPEPHENEIEFILDAISDYLNVKVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 15 chains have been computed
$ 
$ memory statistics:
$ 7872 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 1968 bytes was the average size of a spliced alignment
$ 9184 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2296 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 18 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 20:57:40
-->
