<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 06:07:52"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340936" ref_strand="+" ref_description="SGN-U340936        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | protein kinase family protein, contains protein kinase domain, INTERPRO:IPR000719 | chr5:7301338-7303421 FORWARD | Aliases: None(evalue: 5e-48, score=187) genbank/nr: gi|30688291|ref|NP_680192.2| protein kinase family [Arabidopsis thaliana](evalue: 4e-46, score=187)">
      <seq>ttaatagtagagccaaaaaaagtttcaatttacttgagataaagaaagcatatattcgattattaaagtcagaagcaacaatgggtcatcatcatcatcagttaaccgacccacttgtcactctttgtactagttgtaaaagtttcttctttttcttgtctttttcttgcagaatttgtcaatggaacctttgatcttcaaaattaggcttcttattcttgcttgggtgcatttcagatctcattcaggtccaatatccttggtgaaacacttctctaataaagatataaagaaagcaactgatggttttaggagaattgtttacaactcttccaaaatagttgcttacagagcaaagtttcaaaatggccatgctgcgtttgtgaaagaagtccgaggtttcgaagatgaggatgatacggccttctacagggaggtacagttactcggtcgcttgcatcatcgacatattgctgcacttaatgggttctcttgcggccctaagaggttcctagtctttgaaaatatggaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="6515" stop="11002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6815" g_stop="7062" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7063" i_stop="8832" i_length="1770">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8833" g_stop="9091" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="507" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9092" i_stop="10673" i_length="1582">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10674" g_stop="10702" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="536" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-U340936" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6815" e_stop="7062"/>
          <exon e_start="8833" e_stop="9091"/>
          <exon e_start="10674" e_stop="10702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATAGTAGAGCCAAAAAAAGTTTCAATTTACTTGAGATAAAGAAAGCATATATTCGATTATTAAAGTCAGAAGCAACAATGGGTCATCATCATCATCAGTTAACCGACCCACTTGTCACTCTTTGTACTAGTTGTAAAAGTTTCTTCTTTTTCTTGTCTTTTTCTTGCAGAATTTGTCAATGGAACCTTTGATCTTCAAAATTAGGCTTCTTATTCTTGCTTGGGTGCATTTCAGATCTCATTCAGGTAAACCCCATCTGCCTCAAATCATGTGAAATTGTATTTGTTGAATGTGTTGTGGGTAGTTTTTGAATGGAAGATTTTGTGTAATTTGTGGGGTGAGGGGGTGGAGTTTTTAGTTATCCTGAAGTTGAAATTTGAATTGGGTTGTAGTAAAGTTGTAATCTTTAGTGAATTTGATAGTGATCTTGGTTTGTCTTTTTATGCTGACTTAAGGTGTGTCAGCAGCAGAATTGGTTTTTTCTTTTTTTTTGACTGTATATGGGATTACTGTTATGTAGTGATGGTTAATTGATTAAAGACAGACTATTTACCCCACTAAGGTAGCAGTAAGGTCTGTGTATAGATTATAGAGTACATCTTATCCTAGACTTCATTTGTGGAATTAAAATGGATATGTTGGTGGTGGTGGTGGTGATGGCTAATTGCTTGAGAATGGGTGAAAGAAGTAAAATTTGTAAGGAACCTGAAGTTGAAGTTGATGGGAATTGAAGAAAAATGTAACTGACGAGGTTCTTGGATCGCAGGTATTTGTGTGGTAGTTTCTTGAAATCTGTTGTTGGAGGCTAGAGATTTTAATTACCCTGAAGTTGAAATTTGCAGTAAAGTTGTAAGTTTGTGAATTGGTAATGATCTTGACTTGCCTGTTTTATGCTGACTAGATGTGTGTGAGCAACAAATTAGTTTCTTCTTTCTGTTCACTGTATTTTGGATTATTTTTATGTAGTGATGATTAATTGCTTGAGAATGGGTGGACGAAGTACAATTTATAATGACCCTGAAGTTGATTTTGATGTTGTTACTTATGAGGTTCTTGGGTCGCAGTCTCGCAGATTGTGCTTATTTTTGTGGTAGTTTCTTAAGGGGTGAGGCTTTTAAGTATCCTGAAGTTAAAATTTGAGGCGGGTTGCAGTAAAGTTGTAATTTTGTGAATTGATAGTGAACTTGACTTGTTGTTTTTGCTGACTAGATATGTGTCGGCAGCTGTATTAGTTTCTTCTTTCTTTAACTGTATTTTGGATTAGTGTTATGCAGTAATGGTGACCCTGAAGTTGAAGTTGATGTGAACCAAAGAAAATTGTACTATTTTTGTGAATTATAAAGTTTTGTCCTTGTCTTTTTGTGCTGATTGGAGAAGGGTGAGTAACATTGTCAGTGAGTTTTACTTTTAGTTTCTTTTTTACAACACTGACATTGCCAATTGGTGATGGAAAAAAAAAGGAAGGGAAAACAAGTAAAACAAAAATAAAATACAAGAACACCGTAAATATGATAGTGTAAGGACTCGGTTATCATCTAGTAGTTTCTGGTGCTTGAAAATAGTTCCTTATATAATAGATTACATGACTGAAAATGACTTGGTGAAGCAATTCTCTCGGTCATATGCTTACAGTTGTTTTACCCTAGTTCACTTGTTGTTCCTTGGAACGGTTGAGATGGAAACTATGGCAATTAGCAGACATTGTGTGCTAGGTGATTCAAAATAGAATTTGTAAAGCAGGGTTGTCAATCGCTGGAAACGTCATTATAAGCTGTGGCTTGTTGATGGAACTATGTCCTGTCTTCAAGTCTATTAGTTTTAGGCTGGCATTGTTACACAACTTCCTCTAATGTAGCAAGCAGGCTCACTCTTAGAAGGTTTACTTGACTGTTTGGACTGAGATATTCATTTTTAACTAATATAAGAAAGTCTAAGCCTTGAAGGTTTACTGCTAGACACAGACTTTGCCTTGAAAATCATGGGATATTTTGTTTTTGAACGTAAATCAATTTCAGGTCCAATATCCTTGGTGAAACACTTCTCTAATAAAGATATAAAGAAAGCAACTGATGGTTTTAGGAGAATTGTTTACAACTCTTCCAAAATAGTTGCTTACAGAGCAAAGTTTCAAAATGGCCATGCTGCGTTTGTGAAAGAAGTCCGAGGTTTCGAAGATGAGGATGATACGGCCTTCTACAGGGAGGTACAGTTACTCGGTCGCTTGCATCATCGACATATTGCTGCACTTAATGGGTTCTCTTGCGGCCCTAAGAGGTTAATTTCCTAAGCTTTGGCGTGATGAAGTTTGTGATTTGTAGAAATGGTTCTGTCTCGTTGATTAAAAATCTATCTTTGAGATAAGAATGAGAAAAAATATTGGTTGATTATTTCTTGATCATATTATGATTATAATATAATACTAGTGCTATTGTATATTGTATTACCAATTTATACATTTTGATGCTATCAGAAAAAGTCATAAATATCCGTCATAATTTCTGATCACCAGCAATCTGACCTCTGATCTTTGATATTTTTTGTCACCATTTTTCTTTCGCAACCAAAAGACGTGCAAAATGCAACTTACTACTGGGAATCGCGGGTTCCTTGGTCTAGGAGGTAGGTTTGTAGGTGAGGCATTGTGTCGTCAAGCAGAAAGAAATTCACTCTTCCATTTCTTAGTAGGAATGCTCCTATGTTAGCAGGACATTTCGTGCAAGAACAAGGTTTGAGTTAGTGCACTAGCTAGGCTGTGTTTCTAGCCTAATGGCTCTGTCTTTGAGGTAACCCGGACTAGTACCAACTTAATCTAGTAAATAGGATGTTGAAAAGGCCGGTGGGTCTTCAGGCTGCTTTTTTAATTAATAGTTTCAATCAAAATTCCATCGATTGTAGCTAGTGATTGCCCGGGTTGGTGTGTGATCACCAAAGGTGAATTAACCCTTCAGATGCTCTCTCTGCCAATGCCTAATACCCCCTCCGGTTCCGCCGAGTCACAATTGTAAATTGTTCATAGATCGCTCAATCAGGCTAAATATCTTAAGCAAATGCTTAATTAGCTCTCAATCCTGGCAAAAATATTGACTTCCAAGAATATTTAGATTCTAGCTCTAGTGATATACTGAAAATTAGGGAATCCCCATTTTCATTTCCATGCAGTGTTCTATTGAAATGTTTCAGTTTTTTATTGGTTTGTACTTCCTTTTCTTCAGTTCCAATAGATCTCCATTCCTTCCTTTTCCCTTTGTATAATCACATCACATATGCAGTACAAATAGCTATGGGGGCAAACCCATTATCTTGTGTGTTAGGCTTTCATTGGGTTATGTCTCATCAGCTACTATTTTCTTATTTCGTCTCATTTTTAATAGATAATCAGACAATGCAAATGCATTTTAGCTGCCCAAACTTGTCCCTTAGTCACTCTTTTCCAAGGTGTGGTCAGAAATGTGACATTTCTAGGTGGTTCAATCCGAGAACATTGCTAGAGCAAGAGATACTCTAATTGTGGCACTGAGTTCATGGAGATTTTTCCTGTGAAAAAGAAAGCATTTTGAAGAGACCTATTTAAATGTGAAATTAAATGAAATTCAACATTTCGTTCCTCGTAATACAACATAAGGTCATCAATTTCTCCTGTTACCGCAAATGAAACTAATCAACCTACACAATGGTTTACCACAGTTTTATTAGAAAAAGTATCGCATAGCTTTATCTGCTTAATTGCAGTGGATATCCTTTTGCTTCCAGTTCCTATACATTCTGGGTGTGTATGCTCCTTTTCTTTGGTTGCATTTCCCTTTTGTTCTTTTGGCTTCTTTCTCCATTCTCTGATAGCATATCTTGTCCACTATAGGTTCCTAGTCTTTGAAAATATGGAAAAAG</genome_strand>
        <mrna_strand>TTAATAGTAGAGCCAAAAAAAGTTTCAATTTACTTGAGATAAAGAAAGCATATATTCGATTATTAAAGTCAGAAGCAACAATGGGTCATCATCATCATCAGTTAACCGACCCACTTGTCACTCTTTGTACTAGTTGTAAAAGTTTCTTCTTTTTCTTGTCTTTTTCTTGCAGAATTTGTCAATGGAACCTTTGATCTTCAAAATTAGGCTTCTTATTCTTGCTTGGGTGCATTTCAGATCTCATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAATATCCTTGGTGAAACACTTCTCTAATAAAGATATAAAGAAAGCAACTGATGGTTTTAGGAGAATTGTTTACAACTCTTCCAAAATAGTTGCTTACAGAGCAAAGTTTCAAAATGGCCATGCTGCGTTTGTGAAAGAAGTCCGAGGTTTCGAAGATGAGGATGATACGGCCTTCTACAGGGAGGTACAGTTACTCGGTCGCTTGCATCATCGACATATTGCTGCACTTAATGGGTTCTCTTGCGGCCCTAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTAGTCTTTGAAAATATGGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332249" ref_strand="+" ref_description="SGN-U332249        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | protein kinase family protein, contains protein kinase domain, INTERPRO:IPR000719 | chr5:7301338-7303421 FORWARD | Aliases: None(evalue: 4e-43, score=171) genbank/nr: gi|30688291|ref|NP_680192.2| protein kinase family [Arabidopsis thaliana](evalue: 3e-41, score=171)">
      <seq>aacacctttctgaccctctgatgactccactaaactggagaataagactgcagatagcagttggcatcgctgctgctttagaatatctccacttcttttgtgatccgccgatgtaccacgtttcagtcagttcaagtaccatcatgctggacgagaacttcacagctaaactctgtgatgttagcctcctttgttctgtcgagaacaacaatccacttccgaagtctaaatgctccaaagaatgtggtaatgagatctgcaaacagacaatcttccagcttggtttgctgatcctcgagttagtcaccggtcaatcctcagaagaaggaggtgttgacttagttcaatgggttcaagattctcgcttccgaagaagatccattcaccagatgattgatcctgatctcggagacagctacgatttcaaagagcttaaaggtcttttggcagttgcaaaaatgtgtgtacaatctatccataagcctacaataaagacccctcaaatattgtggtatctccaaaagaaactgggcaggactccagtagtttgctgatgacttgagtcatgtcatgttcacagatatagatcatagattgtgtgagtagacattttttttgtaaagctatgttactcggactcttcaaatcgaagagtccacacaacttagtctgtaagtagtctgctgcgttttgacattgattatgaaattagacctcttcataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="10518" stop="12298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10715" g_stop="10726" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10727" i_stop="10824" i_length="98">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10825" g_stop="10892" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="80" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10893" i_stop="11140" i_length="248">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11141" g_stop="11230" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="170" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11231" i_stop="11352" i_length="122">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11353" g_stop="11422" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="240" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11423" i_stop="11506" i_length="84">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11507" g_stop="11998" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="732" r_length="492" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-U332249" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10715" e_stop="10726"/>
          <exon e_start="10825" e_stop="10892"/>
          <exon e_start="11141" e_stop="11230"/>
          <exon e_start="11353" e_stop="11422"/>
          <exon e_start="11507" e_stop="11998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACCTTTCTGGTAAGTTTAAGCACAAGCCTTCTTTCTTCTTTTTTTTTCTCCGTCTACTTCGCGTTGAATTTGATGTATGTGTTTCTATCTATGTTTGGTTCTTGCAGACCCTCTGATGACTCCACTAAACTGGAGAATAAGACTGCAGATAGCAGTTGGCATCGCTGCTGCTTTAGTATGTTCCTCAAGCTGCTTAGTACTATGTAGTCATATCTTGATCATTTCCAATACAAGCTTTTTATATTTTTCATTTTCCACATTGAAGATATAGTTACTGATAGATTAACTCAAATAGCAAACCCCTCAGAACAGCCTCGATATTACTAAATACAGACTCTGAATTTATTTAGTGTGTCGGCTCTTCTAAGAACTGATTATCACCTAACTGTTGGATTACTGATTGTTGTTTATATCTTGATTTAGGAATATCTCCACTTCTTTTGTGATCCGCCGATGTACCACGTTTCAGTCAGTTCAAGTACCATCATGCTGGACGAGAACTTCACAGCTAAAGTGAGCCTCGCAATCTTGAGCACCTCTCTATAGTAAATTGCTTCATCATCATATTTCATGCACATTTTTTGGACCTGCTTCATCTTTTGTTAAAATAATGACCATATGGTTCCTTGTTCCAGCTCTGTGATGTTAGCCTCCTTTGTTCTGTCGAGAACAACAATCCACTTCCGAAGTCTAAATGCTCCAAAGGTACAAGGCTTCCTCCTTATTATCATCACCTCAAATCATACAAGTTTTGACCTATGTTCAGATTTTGCATTGCTTATCTTGCAGAATGTGGTAATGAGATCTGCAAACAGACAATCTTCCAGCTTGGTTTGCTGATCCTCGAGTTAGTCACCGGTCAATCCTCAGAAGAAGGAGGTGTTGACTTAGTTCAATGGGTTCAAGATTCTCGCTTCCGAAGAAGATCCATTCACCAGATGATTGATCCTGATCTCGGAGACAGCTACGATTTCAAAGAGCTTAAAGGTCTTTTGGCAGTTGCAAAAATGTGTGTACAATCTATCCATAAGCCTACAATAAAGACCCCTCAAATATTGTGGTATCTCCAAAAGAAACTGGGCAGGACTCCAGTAGTTTGCTGATGACTTGAGTCATGTCATGTTCACAGATATAGATCATAGATTGTGTGAGTAGACATTTTTTTTGTAAAGCTATGTTACTCGGACTCTTCAAATCGAAGAGTCCACACAACTTAGTCTGTAAGTAGTCTGCTGCGTTTTGACATTGATTATGAAATTAGACCTCTTCATAAAAACAAGA</genome_strand>
        <mrna_strand>AACACCTTTCTG..................................................................................................ACCCTCTGATGACTCCACTAAACTGGAGAATAAGACTGCAGATAGCAGTTGGCATCGCTGCTGCTTTA........................................................................................................................................................................................................................................................GAATATCTCCACTTCTTTTGTGATCCGCCGATGTACCACGTTTCAGTCAGTTCAAGTACCATCATGCTGGACGAGAACTTCACAGCTAAA..........................................................................................................................CTCTGTGATGTTAGCCTCCTTTGTTCTGTCGAGAACAACAATCCACTTCCGAAGTCTAAATGCTCCAAAG....................................................................................AATGTGGTAATGAGATCTGCAAACAGACAATCTTCCAGCTTGGTTTGCTGATCCTCGAGTTAGTCACCGGTCAATCCTCAGAAGAAGGAGGTGTTGACTTAGTTCAATGGGTTCAAGATTCTCGCTTCCGAAGAAGATCCATTCACCAGATGATTGATCCTGATCTCGGAGACAGCTACGATTTCAAAGAGCTTAAAGGTCTTTTGGCAGTTGCAAAAATGTGTGTACAATCTATCCATAAGCCTACAATAAAGACCCCTCAAATATTGTGGTATCTCCAAAAGAAACTGGGCAGGACTCCAGTAGTTTGCTGATGACTTGAGTCATGTCATGTTCACAGATATAGATCATAGATTGTGTGAGTAGACATTTTTTTTGTAAAGCTATGTTACTCGGACTCTTCAAATCGAAGAGTCCACACAACTTAGTCTGTAAGTAGTCTGCTGCGTTTTGACATTGATTATGAAATTAGACCTCTTCATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316462" ref_strand="+" ref_description="SGN-U316462        Tomato 200607 #1 [25 ESTs aligned] arabidopsis/peptide: AT3G44110.1 | Symbol: None | DNAJ heat shock protein, putative (J3), identical to AtJ3 (Arabidopsis thaliana) GI:2641638, strong similarity to several plant DnaJ proteins from PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684 DnaJ central domain (4 repeats), PF01556 DnaJ C terminal region | chr3:15879781-15882208 REVERSE | Aliases: F26G5.60 (evalue: 1e-150, score=530) genbank/nr: gi|10798648|emb|CAC12824.1| putative DNAJ protein [Nicotiana tabacum](evalue: 2e-155, score=552)">
      <seq>aatcggccgaattctagagcattctccactcttttcaatttctcatttcacctgagccttcaaagatgtgtatatatacaccccttttgagtccttgttggagtcaagtatttgggtgttctgttcttttcatactgttcttgaaaagaagttgaaattgaaaaggatgtttggaagaggagggaaaaaaaagagtgataacacaaagttttatgaaatcttgggtgtttccaagaatgcttcagaagatgaaatcaagaaagcttatagaaaagctgctatgaagaatcaccctgataagggtggtgatcctgaaaagtttaaggagctagctcaagcttatgaggtcttgagtgactcacagaagcgtgagatttatgatcagtatggagaagaagcactgaaagaaggaatgggtggtggtggtggcacacatgatccatttgacctctttaattccttctttagtggaagtccttttggaggtggtggtcgtagaggacaaagagagaggaggggtgacgatgtagtgcatccattgaaggtgtcgcttgaggacctatacaatgggatgaccaagaaactatcgctttcgcgcaatgttatttgctcgaagtgtagtggcaaggggtcgaagtctggtgaatcaatgaagtgttctggttgtgaaggtactggtatgaaggtttcaatcagacagcttgggcctggaatgatccagcaaatgcagcagccttgtaataaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccagagaagaaagtcattgaagtccatgttgaaaaaggaatgcaaaatggacagaaaattacattccctggcgaggctgatgaagcgcctgatacagttactggagatgtggtttttgttctccaacagaaagatcacccgaagttcaagaggaagggtgatgacctgtttgttgatcacacattgaccttaactgaggcactgtgtggtttccagttcatattgggacacttggatggcagacggctcctcgtaaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggattcgttgagcctgccacaggtgcagcttctggaggcaatgttaccatcaaggcctacatcacagtactctgacatggaactggatgaatgtgaggagaccacattgcatgatgtgaatatggaggaagaaatgagaaggaaacaagctgcacaacaagaagcatatgatgaggatgaagagatgtctggtggtggaggacagagagtacagtgtgctcaacagtagatgtagaaagatttaccagtttgaactttgcttatagtttagtttggtttactgttttctgttgttttggaaatgacatgttttgggaagtcaaaaaactgatgctttagtgaaatagaaatattattttcttggggaacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaancccggggggggggccgggaacccatttcccccaaaaggggagcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="15878" stop="11971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15586" g_stop="15268" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15267" i_stop="14322" i_length="946">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14321" g_stop="14156" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="485" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14155" i_stop="13828" i_length="328">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13827" g_stop="13689" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="624" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13688" i_stop="13494" i_length="195">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13493" g_stop="13217" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="901" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13216" i_stop="13049" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13048" g_stop="12850" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="902" r_stop="1100" r_length="199" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12849" i_stop="12736" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12735" g_stop="12272" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1101" r_stop="1564" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-U316462" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1564</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15586" e_stop="15268"/>
          <exon e_start="14321" e_stop="14156"/>
          <exon e_start="13827" e_stop="13689"/>
          <exon e_start="13493" e_stop="13217"/>
          <exon e_start="13048" e_stop="12850"/>
          <exon e_start="12735" e_stop="12272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAGAGAATTCTAGAGCATTCTCCACTATTCTCAATTTCTCATTTCACCTGAGCCTTCAAAGATGTGTATATATACACCCCTTTTGAGTCCTTGTTGGAGTCAAGTATTTGGGTGTTCTGTTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAGGTAATCTTTTTGTTTATTTTTGAAGAAAGGTGAAGTCTTTGTTCTAATTTGGGAGTTTTTTTTTTTTGTTATCGTGTTATGTTTGTTTAAGCTGAAGAGTTGCCAAAGGCTGAGTTTTTGGCTGTGTAAATGTTTTAGTTGAGGTACATTTTAAATTCTGTACCATCTCCTGCTGCCTGCTATATCCTTGTTTCATCCATTGTTTCTTGAAGAATGGCAGTTCTTAGTTTCAATTTGGGAGAAATATACTGGGGGAAGGGGAAGAGGGATCATAAGGTGGGGAATCAAGCTCTCACATTCAGTTTGCCAGCCAAGGAGGTTCTTATGAAGAGGAATTATGGGGAATCAAGTTCTCACTGATAGCCTGAAAATTCAGTTAGCCAGCCAATGGTGGTCCTAAGATTTCGTTTTTTGGGGAGGGGGAGGAAGAATGCTTGTTGAGCTGGTTTATCTCTTTTATGTGTTGGGGTGGTGCCTTTTTTATTGCTATGCTGTTTTGTTTGCTCATCAAGGTGGTGTTTTTAGGCTGTGCAAGTGTTTTAGTTGAGTTGCTTCTTAGAGTTCCATGTATCTGTTGGTTTTGTATTGTAAAGCTGCTTAGATGAACCTGAATACTGGTTTTGTTAAGTAAAGCTGCTTAGATGAACCTCCTGAATACCTGACAAGGGTGGTGATCCTGAAGGATAGCCTTTTTTTCTTTTCATCATCTCCTATTGTTATTTTCCTTTTCCTTTTTGTGTGTTGGTGGTGCTATTTTTTTGTTATGTTTGTTTGATGTAATCTTAAGTTGCTCCCTCCTCATGATGGTGGTTGTGTTTGGAGTTGTTGTCTTCTTGGCTGATAAGCCAGTGAGAAGCTACACTTTTTTGAATGGTCCCTGTTGTTGATTAATCCTCTTTGGGTGGTGTTATTATGCTAATCTGACAACAGTTGTTCTCTTGTGCAGTTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAGGTTAGATCTAATGAACAAAGCTTTCGTGATGCTTGTTATGTGTTACTTCCTCCATTTCAATTTATTTTTCCCGTTTTGATTTTGATTTGATACGGATATTTGAAGGCAGAATTAAAGAGTTGTCCAAAAACAGGGCAATGTGTGTGTTTTTAGTGGACTGAAAAGGGAAGTACCGCAAACAAATTGAAATGGAGGAAGTATCGAGTTTTCTTTCTGGTCATTTTCGTCTTTGAAGTTGAATAAGACCAGCTTGTCTTTTTTGGGATGGTGGTGCGGTAATTGTTATTGTTGTTTGAAACTGAATAACATGAGTGTGTTTACTGAGCAGGTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGGGTCAGTATCTCTCTGATATCCGCATTACTTGATTTCCTGGTAGTGTTTGTAGCCCTATCGTACTTGGCATATAAATGGTTAAACGTAATAGTCTGGAGATGAAAGGATCTCCTGATATAGAGAAGTGAGATTTCAATGCAAGTGCTCAAATGTTCTCTTACGTTGTATTGTATTGGTTTGTTTCTGTAACTGCAGCAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCGGTAAGCTAATCTTGTCATCTCCCACGTGTTAGTACATTAATGTTGATGATATAGACTTAGGTGGTTGCTGACCTGGTTTAGCTAATCTTGTCATCTCAGACATGTTAGTACATTAGCATTAACGATATAGCCTCGGGTGGTTGCTGACCTGGTTTAATATTGTTGCAGCCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</genome_strand>
        <mrna_strand>AATCGGCCGAATTCTAGAGCATTCTCCACTCTTTTCAATTTCTCATTTCACCTGAGCCTTCAAAGATGTGTATATATACACCCCTTTTGAGTCCTTGTTGGAGTCAAGTATTTGGGTGTTCTGTTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAG........................................................................................................................................................................................................................................................................................................................................GTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGG...................................................................................................................................................................................................CAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCG........................................................................................................................................................................CCTGATACAGTTACTGGAGATGTGGTTTTTGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGGACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316461" ref_strand="+" ref_description="SGN-U316461        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT3G44110.1 | Symbol: None | DNAJ heat shock protein, putative (J3), identical to AtJ3 (Arabidopsis thaliana) GI:2641638, strong similarity to several plant DnaJ proteins from PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684 DnaJ central domain (4 repeats), PF01556 DnaJ C terminal region | chr3:15879781-15882208 REVERSE | Aliases: F26G5.60 (evalue: 5e-59, score=223) genbank/nr: gi|10798648|emb|CAC12824.1| putative DNAJ protein [Nicotiana tabacum](evalue: 3e-62, score=240)">
      <seq>tcaagaggaagggtgaggacctgtttgttgatcacacattgcccttaaatgaggcactgtgtggtttccagttcatattggcacacttggatggcagacggctcctcgtaaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggattcgttgagcctgccacaggtgcagcttctggaggcaatgttaccatcaaggcctacatcacagtactctgacatggaactggatgaatgtgaggagaccacattgcatgatgtgaatatggaggaagaaatgagaaggaaacaagctgcacaacaagaagcatatgatgaggatgaagagatgtctggtggtggaggacagagagtacagtgtgctcaacagtagatgtagaaagatttaccagtttgaactttgcttatagtttagtttggtttactgttttctgttgttttggaaatgacatgttttgggaagtcaaaaaactgatgctttagtgaaatagaaatattatttttttggggaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="13290" stop="11971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12990" g_stop="12850" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12849" i_stop="12736" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12735" g_stop="12272" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="605" r_length="464" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="606" polyA_stop="628"/>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-U316461" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12990" e_stop="12850"/>
          <exon e_start="12735" e_stop="12272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</genome_strand>
        <mrna_strand>TCAAGAGGAAGGGTGAGGACCTGTTTGTTGATCACACATTGCCCTTAAATGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTTTTGGGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324122" ref_strand="+" ref_description="SGN-U324122        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | calmodulin-binding family protein, contains Pfam profile PF00612: IQ calmodulin-binding motif | chr3:7831668-7833519 REVERSE | Aliases: MKA23.10(evalue: 5e-53, score=205) genbank/nr: IQ(evalue: 1e-59, score=233)">
      <seq>cttgaacaacaattagaacatgacgctcgtgtacgagagatcgaagagggctggtgtgacagtgttggatctgttgagcaaattcaagaaaagttgctaaagagacaagaggcagctgctaagcgtgaaagagcaatggcctatgctttagctcaccagtggcaggcaggatccaggcagcaggctacactttctgggtttgaaccagataaaagcagctggggttggaactggttagagagatggatggcagtacgcccatgggaaaatcgttttctagaccttaatgtcagagatggagtcatgcctaatgaaaatgaatcagccgaacctgtaaacgggatgaagaaccaggtaaaagttgctgggaagaaaccagcaactacaaaaccagcaactacaactctttcaaatgatagagtgggtccatctcattcaagcagtaactcaaaatcaaatgaaaaggcagcagcatcgctctctgatggttgcagttcttccccaaatgtgtcagcaagcacacaagaaacacctgcagcattagttaacaaacctaagtccaaaccaaatcgtgaagatttagttgaggaagctagttcaaaacccgtccttggttctagatcacacagcaatcctaaggagagatctactccctctgataaacaaggaaaacagagattgtctctgcctggtagcggtcttgcacctcaaacagcgagacaaccaagcagaaccatcaaaaggacatctagtacgcagaagcctttgaaggagaagtccaaattaaacgaaactgatactaagtctacagcaactgtttcacaacaggctgctgattagtttttaggtactcgttgaagatcccgatctcagaaccaagtgtcacccttgcttgtaaatacagggaaccttcttaaaggggagtgatggtatgttgtccacggcagagttaaaaggagataggcttgctgccatctcctgaataacatcttcgcatttgtttcaattcttgtcataattcgtgtaatttatataatagcgcgttgttttctttacccctcctccctcccagtgtaaaaaagaggatgaatttgctttttgtgccacttttcttgagctgaaaactggggaatttggtgagtttgattgccaatttctttgttgtgtgttgtacaagatctgaatgtaggattcattcattaatctagagattgtagaccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="23940" stop="28070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24239" g_stop="24283" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24284" i_stop="24866" i_length="583">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24867" g_stop="24980" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="159" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24981" i_stop="26165" i_length="1185">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26166" g_stop="26688" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="697" r_length="538" r_score="0.943"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26689" i_stop="27244" i_length="556">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27245" g_stop="27776" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="1229" r_length="532" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-U324122" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>1214</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24239" e_stop="24283"/>
          <exon e_start="24867" e_stop="24980"/>
          <exon e_start="26166" e_stop="26688"/>
          <exon e_start="27245" e_stop="27776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAACAACAATTAGAACATGACGCTCGTGTACGAGAGATCGAAGTAAGCAACTTCTAAATTGTTATTACTTAAAATACCCTTGTGATTATTTCCATAGTGGCCATTACTTGTGTCAATGGCATTTATTACTAGGTTATTATATTACTAAGTTTTAATCTTACCTTTTTCGAATGAGAGGTCTCTTGATAGTGGCATCAGCTGTAAATTTGCATTTGGTTTCTGAATTATTTGCCACAGGTTTTGCTTATGGTGGATATCGTTCAACAATATATGATATGCACTGCATCATGTGAAACTTTCCTGATAGGTTCTTCATGGATGTCCCAGAAGGACTGATCGGCATCTCATCATTTGAATGTTGTGGCCAAGAAATTAGGTTATATTGTGGTTCTTGGTTGTTCTTGTCATCAGTCTCATAATATGCTTGATTTTTCCACTTTAAAGGGTGATTCAAGTTGTAGTCTTAGTAATTTTCTATTTCTCTTTTGACATGAACTTTCGTGCCAAAATGTGAAAAAAAGTTTCAAGCGTAGAAGTATGCATTGCCTGGTGGAACTTATGTGGGTACACCCACACTGTTAACATTAACATGTGTCTCACCTTTTGTTGCTGAATATTCTAACAGGAGGGCTGGTGTGACAGTGTTGGATCTGTTGAGCAAATTCAAGAAAAGTTGCTAAAGAGACAAGAGGCAGCTGCTAAGCGTGAAAGAGCAATGGCCTATGCTTTAGCTCACCAGGTAAGCATCTCATCATCCTTCTTGATGATGTTTTTTCTGTTTCCATTACTGTATCAGTTTTTGAACTGATATCTTGAAGGCAAAACTTCAGATTAGATAGATATAATTGAGAACCTGTAAGAGAAGCAGCTGCCTATGTAATCTTTGTATCGATATTTTGAAATATGATCTGTGTAACTGCTTCTAAGTTCAAGAATATGACCAAAAAGTGTTTTTAACTAATAGGTCATATACATGCATCAATGGTATAAGTACTAGTATAACAGCTGAGATTTTCCTGAATGCTGGTGCAATTTGGTAAGGCTAAATGTATCTGAATCTGAATATTCCATAGCATTTGTATCAGCAGTACTAGTAGAGAAAAACTCAGAACCCTCATATATAAACAAACAACAAACATACCCAGTTTTATCCCACAAGTGGGGTCTAAGGAGGGTAAGTTGCACACAAACTTTATCCCTACCCCTACCTATGTGGGGATAGAGAGTGATATTTCCGATAGACCCCTCTTATATGTAGCTCATATTGGTAATTGTTGGGTCTTCTCTTTATTTCCTTTGCTATATGCTACTTGGGTCTTTTCTCTTCATTTTTTTTATATGCTATGTGTGTACTCAAGGACACATGGTGCCTCTAGTCAGAAATCAGGAACAACTATGGAAGAATAAAAATAGCTGTCAATACTGTGGTATCATTTTATGATACTGGTTAGGCAGGACATGGTGAGCCTTTAGCTTACTTAGGATATGACCTTAGATTGGAGGGTGTGGAGGTAAAAAATTCGGGTAGAAGGATAGTAGTAAATAGTTTCGCATCTTTTCCTCTCCTGATAGTATTATTATTATGATTTTTCAGTATTTATTATTGTTTTTCTATTTCCATATTTCTCATTCTTAGTTTTCTATAACTACTTGTCTCGTATGCCTCTATTTTCTTACTAGCTTGCAGTTGTTACTGCTTGTCTTCATAAATGTTGTGTTTTTGCTTTCCTTGAGCCAAGGGTCTATTGGAAGCAGCCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGACACTACCCTCCTCAGATCCCACACTTGGGTAAGTTGGTGTTGGTGTTGTTTGTTGGTTTAGCAAGGTTCCATACTTTCATTTCAATGCGCCTACCTTTTCTTTTTTCTTATTGAACTCTATTTGGTGCTGCAGTGGCAGGCAGGATCCAGGCAGCAGGCTACACTTTCTGGGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTAGAGAGATGGATGGCAGTACGCCCATGGGAAAATCGTTTTCTAGACCTTAATGTCAGAGATGGAGTCATGCCTAATGAAAATGAATCAGCCGAACCTGTAAACGGGATGAAGAACCAGGTAAAAGTTGCT-GG--G--A--AG-------A-AACCAGCAACTACAACTCTTTCAAATGATAGAGTGGGTCCATCTCATTCAAGCAGTAACTCAAAATCAAATGAAAAGGCAGCAGCATCGCTCTCTGATGGTTGCAGTTCTTCCCCAAATGTGTCAGCAAGCACACAAGAAACACCTGCAGCATTAGTTAACAAACCTAAGTCCAAACCAAATCGTGAAGATTTAGTTGAGGAAGCTAGTTCAAAACCCGTCCTTGGTTCTAGATCACACAGCAATCCTAAGGAGAGATCTACTCCCTCTGATAAACAAGGAAAACAGAGATTGTCTCTGCCTGGTAGCGGTAAGTCATCTCTCTCTCTCTTTCTTGTTTAATGATATTGCCTTGTGTAAGACGCTGGAAATGTTACACAATATAGACCCTCTTTGTTTTGCCCACTTCTTCTTGTTTGGCATAAAGATCGAAATATTGTTAATTGAAATTACCGTCTCCTCTATAAATAACCCTATCAATAAGCAAAAGTAGCACTGTAACTTGTTTAATGTTTCTCTGCGAAGCCCTCACAGAGGTAATGAATTTCGGAATGCTATGCTGAAGGAAAATTATTTATAAAAATTTTGTACTTATTTTTCACTTTTATTTTATTCAAGTACGATGATGATGTGAAATTTAGATAAATGAAGAACTGTCGACCCCAACGTGTTTGGACTGAGGCATAGTTGTTGTTGTCGCTATGCCGAAGGAATGGGCATGAACAGATCTTTATAATATTCGTACGTCTTTTCAGACAAATATGGTAGTGAGAGTGACAACACATATTCTGTAACCACACTAGTGTGTTGAAATATTCCTGCAACTAGTGCCGTATGCACTAATTTTTACGACATCTTTTTTCCAGGTCTTGCACCTCAAACAGCGAGACAACCAAGCAGAACCATCAAAAGGACATCTAGTACGCAGAAGCCTTTGAAGGAGAAGTCCAAATTAAACGAAACTGATACCAAGTCTACAGCAACTGTTTCACAACAGGCTGCTGATTAGTTTTTAGGTACTCGTTGAAGATCCCGATCTCAGAACCAAGTGTCACCCTTGCTTGTAAATACAGGGAACCTTCTTAAAGGGGAGTGATGGTATGTTGTCCACGGCAGAGTTAAAAGGAGATAGGCTTGCTGCCATCTCCTGAATAACATCTTCGCATTTGTTTCAATTCTTGTCATAATTCGTGTAATTTATATAATAGCGCGTTGTTTTCTTTACCCCTCCTCCCTCCCAGTGTAAAAAAGAGGATGAATTTGCTTTTTGTGCCACTTTTCTTGAGCTGAAAACTGGGGAATTTGGTGAGTTTGATTGCCAATTTCTTTGTTGTGTGTTGTACAAGATCTGAATGTAGGATTCATTCATTAATCTAGAGATTGTAGACCATATTGTGC</genome_strand>
        <mrna_strand>CTTGAACAACAATTAGAACATGACGCTCGTGTACGAGAGATCGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCTGGTGTGACAGTGTTGGATCTGTTGAGCAAATTCAAGAAAAGTTGCTAAAGAGACAAGAGGCAGCTGCTAAGCGTGAAAGAGCAATGGCCTATGCTTTAGCTCACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGGCAGGATCCAGGCAGCAGGCTACACTTTCTGGGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTAGAGAGATGGATGGCAGTACGCCCATGGGAAAATCGTTTTCTAGACCTTAATGTCAGAGATGGAGTCATGCCTAATGAAAATGAATCAGCCGAACCTGTAAACGGGATGAAGAACCAGGTAAAAGTTGCTGGGAAGAAACCAGCAACTACAAAACCAGCAACTACAACTCTTTCAAATGATAGAGTGGGTCCATCTCATTCAAGCAGTAACTCAAAATCAAATGAAAAGGCAGCAGCATCGCTCTCTGATGGTTGCAGTTCTTCCCCAAATGTGTCAGCAAGCACACAAGAAACACCTGCAGCATTAGTTAACAAACCTAAGTCCAAACCAAATCGTGAAGATTTAGTTGAGGAAGCTAGTTCAAAACCCGTCCTTGGTTCTAGATCACACAGCAATCCTAAGGAGAGATCTACTCCCTCTGATAAACAAGGAAAACAGAGATTGTCTCTGCCTGGTAGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGCACCTCAAACAGCGAGACAACCAAGCAGAACCATCAAAAGGACATCTAGTACGCAGAAGCCTTTGAAGGAGAAGTCCAAATTAAACGAAACTGATACTAAGTCTACAGCAACTGTTTCACAACAGGCTGCTGATTAGTTTTTAGGTACTCGTTGAAGATCCCGATCTCAGAACCAAGTGTCACCCTTGCTTGTAAATACAGGGAACCTTCTTAAAGGGGAGTGATGGTATGTTGTCCACGGCAGAGTTAAAAGGAGATAGGCTTGCTGCCATCTCCTGAATAACATCTTCGCATTTGTTTCAATTCTTGTCATAATTCGTGTAATTTATATAATAGCGCGTTGTTTTCTTTACCCCTCCTCCCTCCCAGTGTAAAAAAGAGGATGAATTTGCTTTTTGTGCCACTTTTCTTGAGCTGAAAACTGGGGAATTTGGTGAGTTTGATTGCCAATTTCTTTGTTGTGTGTTGTACAAGATCTGAATGTAGGATTCATTCATTAATCTAGAGATTGTAGACCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346081" ref_strand="+" ref_description="SGN-U346081        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ctacttgggtcttttctcttcatttttttgtatatgctatgtgtgtactcaaggacacatggtgcctctagtcagaattcaggaacaactatggaagaataaaaatagctgtcaatactgtggtatcattttatgatactggttaggcaggacatggtgaacctttagcttacttaggatatgaccttatattggagggtgtggaggtaaaaaattcgggtagaaggctagtagtaaatagtttctcatcttgtcctctcctgatagtagtattagtatgatttttcagtatttaatattgctttaatatttccatatttctcattcttagttttctataactagtctcgtatgcctctattttcttactagcttgcagttgttactgcttgtcttcataaatgttgtgttttagggtctattggaagcagcctctctacctgccaaggtaggggtaaggtctgtgacactaccctcctcagatctcacacttgggtaagttggcgttggtgttgtttgttggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="25248" stop="26391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25548" g_stop="26091" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-U346081" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.034" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25548" e_stop="26091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTTGGGTCTTTTCTCTTCATTTTTTT-TATATGCTATGTGTGTACTCAAGGACACATGGTGCCTCTAGTCAGAAATCAGGAACAACTATGGAAGAATAAAAATAGCTGTCAATACTGTGGTATCATTTTATGATACTGGTTAGGCAGGACATGGTGAGCCTTTAGCTTACTTAGGATATGACCTTAGATTGGAGGGTGTGGAGGTAAAAAATTCGGGTAGAAGGATAGTAGTAAATAGTTTCGCATCTTTTCCTCTCCTGATAGTATTATTATTATGATTTTTCAGTATTTATTATTGTTTTTCTATTTCCATATTTCTCATTCTTAGTTTTCTATAACTACTTGTCTCGTATGCCTCTATTTTCTTACTAGCTTGCAGTTGTTACTGCTTGTCTTCATAAATGTTGTGTTTTTGCTTTCCTTGAGCCAAGGGTCTATTGGAAGCAGCCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGACACTACCCTCCTCAGATCCCACACTTGGGTAAGTTGGTGTTGGTGTTGTTTGTTGGTTT</genome_strand>
        <mrna_strand>CTACTTGGGTCTTTTCTCTTCATTTTTTTGTATATGCTATGTGTGTACTCAAGGACACATGGTGCCTCTAGTCAGAATTCAGGAACAACTATGGAAGAATAAAAATAGCTGTCAATACTGTGGTATCATTTTATGATACTGGTTAGGCAGGACATGGTGAACCTTTAGCTTACTTAGGATATGACCTTATATTGGAGGGTGTGGAGGTAAAAAATTCGGGTAGAAGGCTAGTAGTAAATAGTTTCTCATCTTGTCCTCTCCTGATAGTAGTATTAGTATGATTTTTCAGTATTTAATATTGCTTTAATATTTCCATATTTCTCATTCTTAGTTTTCTATAACTA---GTCTCGTATGCCTCTATTTTCTTACTAGCTTGCAGTTGTTACTGCTTGTCTTCATAAATG-T-TG----TG--TT--TT------AGGGTCTATTGGAAGCAGCCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGACACTACCCTCCTCAGATCTCACACTTGGGTAAGTTGGCGTTGGTGTTGTTTGTTGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332758" ref_strand="+" ref_description="SGN-U332758        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam profile PF03267: Arabidopsis protein of unknown function, DUF266 | chr3:19321510-19323264 REVERSE | Aliases: F4F15.170(evalue: 3e-38, score=155) genbank/nr: unknown(evalue: 2e-36, score=155)">
      <seq>ttctgttgcttcacttctttcacttcaatctttctccattaatggtgattttgctgtaacaagaaaatatgttcagattatctgtagttatcccttttcttactcttctcatttctgttcttattctcttcttattaggaccaaaaatcctcttacctcgacaaatctccatttctgtacccgatgaactcgacgatctttcactttttcacaaagcaattgctgctgaaaccacttttccgaaacacccatctcacaaaaaactccgtcttggatccgctactgttcgtccaccaaaaatcgcatttatgttcttaacaaattcagatttgaagttttccccaatttgggagaagttcttcaatggtactaaacctgtagatccacatctatacaatatctacatacacgctgacccatctatcaagatttcacctttaatgggtgtttttaaagatcgattaattccggcgaagagaactcaacgttcatcgccgacactcatatctgctgcccggagattacttgctcatgctttacttgacgacccatcaaactcgtatttcgctcttatctcacaacattgtatacctttacactcttttaattacttttacaattttttacttgatacccagaaattgtcgaggaaaatggagttccctagttatattgagattnctgatgaatctgattcgttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="30190" stop="31492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30490" g_stop="31192" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-U332758" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30490" e_stop="31192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTTGCTTCACTTCTTTCACTTCAATCTTTCTCCATTAATGGTGATTTTGCTGTAACAAGAAAATATGTTCAGATTATCTGTAGTTATCCCTTTTCTTACTCTTCTCATTTCTGTTCTTATTCTCTTCTTATTAGGACCAAAAATCCTCTTACCTCGACAAATCTCCATTTCTGTACCCGATGAACTCGACGATCTTTCACTTTTTCACAAAGCAATTGCTGCTGAAACCACTTTTCCGAAACACCCATCTCACAAAAAACTCCGTCTTGGATCCGCTACTGTTCGTCCACCAAAAATCGCATTTATGTTCTTAACAAATTCAGATTTGAAGTTTTCCCCAATTTGGGAGAAGTTCTTCAATGGTACTAAACCTGTAGATCCACATCTATACAATATCTACATACACGCTGACCCATCTATCAAGATTTCACCTTTAATGGGTGTTTTTAAAGATCGATTAATTCCGGCGAAGAGAACTCAACGTTCATCGCCGACACTCATATCTGCTGCCCGGAGATTACTTGCTCATGCTTTACTTGACGACCCATCAAACTCGTATTTCGCTCTTATCTCACAACATTGTATACCTTTACACTCTTTTAATTACTTTTACAATTTTTTACTTGATACCCAGAAATTGTCGAGGAAAATGGAGTTCCCTAGTTATATTGAGATTCTTGATGAATCTGATTCGTTATT</genome_strand>
        <mrna_strand>TTCTGTTGCTTCACTTCTTTCACTTCAATCTTTCTCCATTAATGGTGATTTTGCTGTAACAAGAAAATATGTTCAGATTATCTGTAGTTATCCCTTTTCTTACTCTTCTCATTTCTGTTCTTATTCTCTTCTTATTAGGACCAAAAATCCTCTTACCTCGACAAATCTCCATTTCTGTACCCGATGAACTCGACGATCTTTCACTTTTTCACAAAGCAATTGCTGCTGAAACCACTTTTCCGAAACACCCATCTCACAAAAAACTCCGTCTTGGATCCGCTACTGTTCGTCCACCAAAAATCGCATTTATGTTCTTAACAAATTCAGATTTGAAGTTTTCCCCAATTTGGGAGAAGTTCTTCAATGGTACTAAACCTGTAGATCCACATCTATACAATATCTACATACACGCTGACCCATCTATCAAGATTTCACCTTTAATGGGTGTTTTTAAAGATCGATTAATTCCGGCGAAGAGAACTCAACGTTCATCGCCGACACTCATATCTGCTGCCCGGAGATTACTTGCTCATGCTTTACTTGACGACCCATCAAACTCGTATTTCGCTCTTATCTCACAACATTGTATACCTTTACACTCTTTTAATTACTTTTACAATTTTTTACTTGATACCCAGAAATTGTCGAGGAAAATGGAGTTCCCTAGTTATATTGAGATTNCTGATGAATCTGATTCGTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339919" ref_strand="+" ref_description="SGN-U339919        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam profile PF03267: Arabidopsis protein of unknown function, DUF266 | chr3:19321510-19323264 REVERSE | Aliases: F4F15.170(evalue: 3e-61, score=233) genbank/nr: gi|77557088|gb|ABA99884.1| expressed protein [Oryza sativa (japonica cultivar-group)] (evalue: 2e-60, score=236)">
      <seq>attgagattcttgatgaatctgattccttattagataggtatgatgcgaaagggaataatataatggaacctgaggtgaaatttgaggaatttaaagttggttcacagttttttgtgttaacaagaaagcattctttaatggtgattaaagataggaagttatggaggaaatttagaaaaccatgtttaaatgttgagtcttgttatccagaagagcattattttcctactttgttatcaatggaggatcctaatggttgtaccaagtatacattgacaaatgtgaattggactgatacagttgatggtcatccacatacttatcatccttctgaggtttcttcaaagctgatttatgatcttagagagtcaaattctacatattcatacatgtttgcaaggaaattttcacctgattgcttgaaccctttgatggaaatggcagagtcagtcatcttcaaggactagttcttgcttgaggcaatggtgagatgatgaaggagtgaagacaaatcaaaggcaaaaactttgatgatgttgtgaggacaaaaaaagattggtttgttgtgtacgagtaacacatgtggaaataaggtttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="30861" stop="33259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31161" g_stop="31646" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31647" i_stop="32840" i_length="1194">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32841" g_stop="32959" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="605" r_length="119" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-U339919" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31161" e_stop="31646"/>
          <exon e_start="32841" e_stop="32959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAGATTCTTGATGAATCTGATTCGTTATTAGATAGGTATAATGCAAGAGGGAAGAATATAATGGAACCTGAGGTGAAATTTGAGGAATTTAAAGTTGGTTCACAGTTTTTTGTGTTAACAAGAAAGCATTCTTTAATGGTGATCAAAGATAGGAAGTTATGGAGGAAATTTAGAAAACCATGTTTAAATGTTGAGTCTTGTTATCCAGAAGAGCATTATTTTCCTACTTTGTTATCAATGGAGGATCCTAATGGTTGTACCAAGTATACATTGACAAATGTGAATTGGACTGATACAGTTGATGGTCATCCACATACTTATCATCCTTCTGAGGTTTCTTCAAAGCTGATTTATGATCTTAGAGAGTCAAATTCTACATATTCATACATGTTTGCAAGGAAATTTTCACCTGATTGCTTGAACCCTTTGATGGAAATGGCAGAGTCAGTCATCTTCAAGGACTAGTTCTTGCTTGAGGCAATGGTAAGTGATGATTGCATACTTTCTTTTTTTCTCATTGAATTGACTTAGGTTTTACTGAGTTTTCCTTGTAGAATTAGGGAGTTTAGTTAGTACTTGTGTAGGTGTGAGGTAGCGAGTACCTTGTGAGATTAATTGCGACTAAGCTGATCCAAACACCATGATTCGATCGTTTGTTTGTGAGATTAATTGCGACTAAGTTGATCCAAACACCATGATTCAATCGTTTGTTTACTGTCCTTTTAAAGTATGTGTCTTTCCTTTTTTTTTGATATTTTTTAGTTCTAACAATTCACATTCACATGACATGTTTAAGAATACGTAGCATTTTAGTACTTCCTATGTATCTTTAGTACATGACCACAAAGTCTTTCTTACTTTCTTTTACTTTTGTAAACTTCATGCGAAGTTTAAATGAAAATCGGACAAACAAGTTGAAACGGAGGGAGTAAAGGAAATTAGGTTTTTTTTTGAAATGGATGGTTGTGATATAATATTCTAGAAGTGATGTTGGAATTGATAGGTTAACAATGCTTTTAATAGAACTTGACTATTTTGTTGGTGAATAGGTCTCTTCAATATGGCATATTTTTCTTATGAGGCATTATTTCAATCTTAACTAGGTGGGATTTTCATTTGATAAAGTCTTAAACTTTAGCATATTCATGTGAAAATTGGAATTTTTTTCTTAAAAGATACTTGTTGTGGTAGTAGTTTTGCCACTTACAAGTAGTAGTTGTGAAGGTTTTACAGATTCTTTGTATGATATTTTTTGGATGGTATGTAGCTATCCCTTATGACACATCTAACAAGAAATTTACAACTTTCACATGTGACACATTTTCTTTTTTCATTTGCACACTTTTGATTAGTCAAACTCTTGAATATACTATAGTATGAAATCTTGAAAATGTTGCACCTTGTCTTTGTATGTCACACCTCATCTCTTATGCCACTTTGTCTTGAACTAAAGGCAAATGAAAGGACAAGATAAAGAACAATAATTGATCAATTGTGTACTCTATTATATTTTAATCTTGATTTGAAGTTTGGACAAGTGTCTTAATCATCATTTAGAAAATTAGGAGGTTGGTTTGGTATATTTGAAGTCTAATACACCCCTATATGTCAAATGAAGCAATGAGATAGTGATTTAAAACTGACCATTGTTTTGTTTTATCTTATATTTTATAATAGGTGAGATGATGAAGGAGTGAAGACAAATCAAAGGCAAAAACTTTGATGATGTTGTGAGGACAAAAAAAGATTGGTTTGTTGTGTAGGAGTAACACATGTGGAAATAAGGTATTTTTTTT</genome_strand>
        <mrna_strand>ATTGAGATTCTTGATGAATCTGATTCCTTATTAGATAGGTATGATGCGAAAGGGAATAATATAATGGAACCTGAGGTGAAATTTGAGGAATTTAAAGTTGGTTCACAGTTTTTTGTGTTAACAAGAAAGCATTCTTTAATGGTGATTAAAGATAGGAAGTTATGGAGGAAATTTAGAAAACCATGTTTAAATGTTGAGTCTTGTTATCCAGAAGAGCATTATTTTCCTACTTTGTTATCAATGGAGGATCCTAATGGTTGTACCAAGTATACATTGACAAATGTGAATTGGACTGATACAGTTGATGGTCATCCACATACTTATCATCCTTCTGAGGTTTCTTCAAAGCTGATTTATGATCTTAGAGAGTCAAATTCTACATATTCATACATGTTTGCAAGGAAATTTTCACCTGATTGCTTGAACCCTTTGATGGAAATGGCAGAGTCAGTCATCTTCAAGGACTAGTTCTTGCTTGAGGCAATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGATGATGAAGGAGTGAAGACAAATCAAAGGCAAAAACTTTGATGATGTTGTGAGGACAAAAAAAGATTGGTTTGTTGTGTACGAGTAACACATGTGGAAATAAGGTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328096" ref_strand="+" ref_description="SGN-U328096        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>ttttttttgaagggtttgttgaaaaacaacaatgccttcaaaccaagtaaatcccaaaagggaagtatccaaaactcaaagtttggatgagctttcaaagaaaagcaatggaaaagctagttttagtagtagtagttgagctggtaatttgatgatgtaaaacatgtcttagttgtagcatctagtattcatttggtgtttgtgtgtgttgctctctatattgttcggattcttcatgaataccgtccagagtgtgtctgatcctctaaaagctatgctttttttaaagatctgatacgaatgtgacaacaattttggagggtcggagcaatatgggttttgctttgtacatagatggcaagtatatatgtgttttagggagagattagccttgaacaaaatcaagaaaagtgctaaactctattggtttttttatttttctactacttgtggaaatgaatcattgtatcaaaacatttactatccaatgtagtaaatgatttttagagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="32652" stop="33763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32952" g_stop="33462" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-U328096" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32952" e_stop="33462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTGAAGGGTTTGTTGAAAAACAACAATGCCTTCAAACCAAGTAAATCCCAAAAGGGAAGTATCCAAAACTCAAAGTTTGGATGAGCTTTCAAAGAAAAGCAATGGAAAAGCTAGTTTTAGTAGTAGTAGTTGAGCTGGTAATTTGATGATGTAAAACATGTCTTAGTTGTAGCATCTAGTATTCATTTGGTGTTTGTGTGTGTTGCTCTCTATATTGTTCGGATTCTTCATGAATACCGTCCAGAGTGTGTCTGATCCTCTAAAAGCTATGCTTTTTTTAAAGATCTGATACGAATGTGACAACAATTTTGGAGGGTCGGAGCAATATGGGTTTTGCTTTGTACATAGATGGCAAGTATATATGTGTTTTAGGGAGAGATTAGCCTTGAACAAAATCAAGAAAAGTGCTAAACTCTATTGTTTTTTTTATTTTTCTACTACTTGTGGAAATGAATCATTGTATCAAAACATTTACTATCCAATGTAGTAAATGATTTTTAGAGAA</genome_strand>
        <mrna_strand>TTTTTTTTGAAGGGTTTGTTGAAAAACAACAATGCCTTCAAACCAAGTAAATCCCAAAAGGGAAGTATCCAAAACTCAAAGTTTGGATGAGCTTTCAAAGAAAAGCAATGGAAAAGCTAGTTTTAGTAGTAGTAGTTGAGCTGGTAATTTGATGATGTAAAACATGTCTTAGTTGTAGCATCTAGTATTCATTTGGTGTTTGTGTGTGTTGCTCTCTATATTGTTCGGATTCTTCATGAATACCGTCCAGAGTGTGTCTGATCCTCTAAAAGCTATGCTTTTTTTAAAGATCTGATACGAATGTGACAACAATTTTGGAGGGTCGGAGCAATATGGGTTTTGCTTTGTACATAGATGGCAAGTATATATGTGTTTTAGGGAGAGATTAGCCTTGAACAAAATCAAGAAAAGTGCTAAACTCTATTGGTTTTTTTATTTTTCTACTACTTGTGGAAATGAATCATTGTATCAAAACATTTACTATCCAATGTAGTAAATGATTTTTAGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318659" ref_strand="+" ref_description="SGN-U318659        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: AT3G48030.1 | Symbol: None | hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein, similar to RING-H2 finger protein RHX1a (Arabidopsis thaliana) GI:3790591; contains Pfam profiles PF00097: Zinc finger C3HC4 type (RING finger), PF04588: Hypoxia induced protein conserved region | chr3:17736395-17738939 REVERSE | Aliases: T17F15.100 (evalue: 1e-18, score=90.9) genbank/nr: hypothetical(evalue: 1e-16, score=90.9)">
      <seq>tggaaaggaggagaagagagcggcacacgtagttacgcttcagacctcaaaatttcgactgaaaaagcagttacacaaagagaagagaagaagaacgaaaacaaataacgaagaaaattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtggctcagccgctacgatgtggtaaatccgcagtctcatctgcaagaacagcccaacgcaatgtagtagcatggctctaccacaaggcattaagcttacaattgaaccagcaactctttttcaagtttcctcgttcatttgctccccaccttcctaaatttgctttcagttttcaagttttaccctttaggcatgttttgaacattatataggacttgtttcaaggtacaggatgttacagattactctaggcgtatatgtcaatgatggtaattcagcctcgttaattggatcaatagctgttattaacttatgctatatatataactttataggttgggcttgagcttaaatgtgataaccaacttctcctatttccagaaaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatgattataaggcgaggtcatttggtcttctgttatgaattcttgagaagtgatgcattttctgctgccttactttcctgtgagatatcgttcatgttaatcttcccaatcccggttgatcctccactgtttcaattttttggctaaattgtctctgaacactctcaactcatattctgtttgtgcaatttatgactttgcgaaatttcaggtgcatttctcactgcaggagtgctcactgccggactcattagtttcaagcggggaaattctcaattaggtcagcaactaatgagagctagagttcttgttcaaggtggtacagtcgcactgatggttggttcagcatattactatggagataatttcaagcgcgctggatgactgactgactgactaccaaacgactccctcattcgtctgtcatgagttgattttctgctgggaaaaaatgattccatatcttgctaggatgcagtttctttacatggctgtcattgccaccccaatcacataagaaagaaaatgtagaggaaaaagtaataacagagtgataacataatgataatgtttatgtatttttcaaaatttatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="37050" stop="40476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37350" g_stop="37544" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37545" i_stop="39134" i_length="1590">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39135" g_stop="40176" g_length="1042"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="1239" r_length="1044" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-U318659" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1237</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37350" e_stop="37544"/>
          <exon e_start="39135" e_stop="40176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAAGGAGGAGAAGAGAGCGGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAAT-TAGAGGAAAAAGTAATAACAGAGTGA-AACATAATGCTAATGTTTATGTATTTTTCAAAATTTATGGG</genome_strand>
        <mrna_strand>TGGAAAGGAGGAGAAGAGAGCGGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATGTAGAGGAAAAAGTAATAACAGAGTGATAACATAATGATAATGTTTATGTATTTTTCAAAATTTATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325178" ref_strand="+" ref_description="SGN-U325178        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | ubiquitin-conjugating enzyme 4 (UBC4), E2; identical to gi:431265, SP:P42748 | chr5:16555351-16557358 REVERSE | Aliases: MYC6.5, MYC6_5(evalue: 1e-74, score=276) genbank/nr: gi|136644|sp|P16577|UBC4_WHEAT Ubiquitin-conjugating enzyme E2-23 kDa (Ubiquitin-protein ligase) (Ubiquitin carrier protein) gi|100765|pir||A34506 23K ubiquitin carrier protein E2 - wheat gi|170782|gb|AAA34309.1| ubiquitin carrier protein(evalue: 6e-75, score=283)">
      <seq>tgacatggtaggtagtgggttacctttttgttgagctacagccatggaagctattttgaagaagaagacaaagtgcgaaggacaaattatcaattttttcagtaagaaaaaaaaaaagccgaaagattctgaggatcaatagttagttgaaaatgtcttctccaagcaaaagaagagatatggatgttatgaaattgatgatgagtgattataaggtggagacaattaatgatggaattacggagttcaacgtggaatttcacggcccaaaagaaagcctttatgaaggtggagtttggaaaataagggtcgagttgccagatgcctacccttacaagtctccttccatcgggtttctcaacaaaatattccaccctaatgttgatgagctgtctggctctgtatgtttggatgtcatcaatcagtcatggagccctatgtttgatctcttaaacgtttttgaggttttcctgccacagcttttgctatatccgaatccttcggatccattaaatggtgatgcagcctcactgatgatgaaagacaagaatcaatatgagcaaaaagtgaaagagtactgtgaacggtacgcaaagaaggagaatgtcgttggcacaccaaaagatgatagtgatgatgagattagtgaagaggagttcagtggacagagcgaaagcgatgatgaagttgttggacatgctgatccttgagtgaatagactaggatcctaaaatggagatcatgtttttagttcatttttctccttacatgtaatatccgattcgtcgtcgcatgtaaatctaggtgccaaagatagtttagggacaatatacataacctacagatgtgtgatgaatctcagtctgtgtagaaactctctaccttatggtcaatgtaacttaccaatatatgtgttaaaattcaggttcttgttttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="40732" stop="45309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41032" g_stop="41156" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41157" i_stop="42419" i_length="1263">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42420" g_stop="42490" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="196" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42491" i_stop="42667" i_length="177">
            <donor d_prob="0.199" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42668" g_stop="42747" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="276" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42748" i_stop="43624" i_length="877">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43625" g_stop="43739" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="391" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43740" i_stop="43951" i_length="212">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43952" g_stop="44004" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="444" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44005" i_stop="44433" i_length="429">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44434" g_stop="44562" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="573" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44563" i_stop="44642" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.642" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44643" g_stop="45009" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="939" r_length="366" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="940" polyA_stop="953"/>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-U325178" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>940</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41032" e_stop="41156"/>
          <exon e_start="42420" e_stop="42490"/>
          <exon e_start="42668" e_stop="42747"/>
          <exon e_start="43625" e_stop="43739"/>
          <exon e_start="43952" e_stop="44004"/>
          <exon e_start="44434" e_stop="44562"/>
          <exon e_start="44643" e_stop="45009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACATGGTAGGTAGTGGGTTACCTTTTTTGTTGAGCTACAGCCATGGAAGCTATTTTGAAGAAGAAGACAAAGTGCGAAGGACAATTTCTCAATTTTTTCAG-AAGAAAAAAAAAAAGCCGAAAGGTAAACGCATAGTAATCAAAGCCACGTAGCTGTTAGTATCATTCTTTTGTATATATACAATGCACGTGCCTTTTTTCAACTCTGTAACTCTGCCTAATGCCCCAACATGTCGACACCTTTCCCTTTTATATATATATAGAGAAGAAATTTTATTTATCTTTTTCTTTCATGTTCAGATCTTGTTGCATAATCCTCCTAGTTAAGTGTAAATTTGATTTTTGACGTGTGTAGATTTGTTTCTTGTTGTGTTTTTTTATGAAGAAATGAAATTGATTTTGATTTTATTGTGGATGGGGTACTTTTTTATTTGATGGGTGTGGTTTTTTTTGGCTAAAGTTTTGATCTTTTTCAATTTGGTTTTCATCTAATCTAATTTAATTTTTGTGCATTGCTAAGACTTAGTGTGTATCTTTGAATGTTGTGATTCTTTTAGTTTTAATTAATTGTTATGTGTAGTGGTTTCTTGGAATGGATTTGTGTGTTTTGAGGATTCAAGTTTGTGACTTTCTTTTTTTTTTTAATAAGCTTGCGTTCTCCTTGACTAATTCCACGGGTAGGTAGTTGTTATTGCTCCCACTAGGCTTGGACAAATGAGAATAAATCACTTAGTGTTTGTAAAGTGGTGGTTAGATTATCTACGGGGTGGAGTGTTGGTCGATCAAGAACTTGCACCTCTTGAAAATGAGCGTAGTGGAGAATGAGGATGTTGAGATGGATACATGAGCATATTAGGAGAGATTAGAATTAAGAAAGAAGCTATTCAGGACTAGGTGGGAGTGGCCTACATGGTGTAAGATGAGGGAGGTGAGATTGAGATAGTTTGGGCGTCTGAAGAGAAGATGCACATATGCCCCAATGATGAGGTGTCTGGTTGACTATTTTGGTATAAGGGGAGGTAGAGGTAGAACCGCAGAAATCTTGGGAAAGGTGAGTAGACATGACATACCACACCTTTAGTTTATCGATGACATGATCATAGATAGGAAGATATGGAGGTCGAGGATTGGGGTAGAAGGTTAGTAGGTAGTCGAGCATTATCTAGTTCCCTTATTTGCTGCAGTTACTGTATTATCCGTCGTTGTTGTAACCATTTATTTCTTATGCTCTTTCATAAACAGACGCGTAATTGCTGATCTCGTTGTTTGGTTTCTGTTTTTACATCTTTTTTACTGAACTTACGAACTTATATGTTGAATCCTGTTTTTACATCTTTTTTACTGAACTTACGAACTCATATGTTGAATCCTTGGCTTCATTCCGCAGATTCTGAGGATCAATAGTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATTGTAAGAACGTCTGAGATAAGATTTTCTTGCTGTCATGGATATAATTTTGTAGATTCTAAACAATTTAGCTGTTTCTTCATCTTATCTGATGAACCAACGTTTTTTAGTACATATGAATTCATATGGCAGCTTTTGATTACCACCATGAAGTCACTTTATGTCATTTTCATTTCACAGGATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAAGTAATGTCATGAAGATACTTGTTTCACTATGTTTTTTTATTGATTTCGTGACTTTGCTGAAGGATCATCTTCCCCTAGATTGGCGTTCTCCTTCTTAAAGTTAGTTTTTGAAGAGAGGGCAGCATTTTAATTGGATTAGTTTTTATTACGGTGATACAGCAATTTTAATTGTTTTTCAATTATGTATCTTAGATATCTCAAAAACGTTCCGTTGTTTATATAACACTCATCATCCTACATTTTAGCATAAGATTAACCAAATCAAGACCTTTTTGCTCTCAGTCTTGGAAGTAGCTTTTCCGCCAGAATCTTGCGCTTGTTGCTTTTCGCGCAGAGAAAAGCACATTACATAATATATGATATTGCTATTGGAGGTGCTATTTGCTTAGATAACTATATTTCTCAGACTCGGGTGTTTATCTAGAGGTCGGATTATTCTTCACATAAATTTTAGGATTCGACCCCCGAGTGCGGATACAGCCAATAAATGTATATCACGACATATAGTAGTATATATTTTGATTAATTAAAGTTATTGGCGTACAACTAATGAAACTTTATTTTTATAAGCACCTTATATTTATTCATAAGTCTGGTGTTCTAGCAAAACATTTCATACTTTATAAAACTATAGATATATGTCTAATCAACCAAATACCTAGTCAGTCATACTTCTTAGTCATAGATGTAGTCAAAGCAGTCAAGATGTTAACCAAATTTAGTGTGGATCTCACACCCAAATTGTGTCCTGCCGACATGGGTGTGATAGGGATTTCGACGGGTCAGAGCTACATAGTTAGATAATGCAGACTCATACATTTAGTTTGTTGTAAATATTTTTTTTTCCGTACTTAGCTAACTATCTAAATTGTTACAGGCCTTTATGAAGGTGGAGTTTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATCGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCTGTAAGATATATATACCTTCTTTCTGTATTTTTAGCAACTACCATTTTTCTCTGTCAGTCACATGTAGGAAGTTACGGTAGATTGTTTTTATGTATGGTAGCTGCAATTCGTCTTTTAATCTCTTTGCCGAACCTCTGTAACATAAGTCTATGTAGTTCATCTGTGGAAAATGTTAATGCACTATTGCTCACAAGATTCATCTGTTATTGCAGGTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTGGTAATACGTACTGCTAAGTGACAAAGCATTAAGATTCTTAGGGTGAAAAATGCTTAACCGCATGAGCTCTTACTTGTGCGTAGTTTGTTTCACACGTATGCATTTCACTTTATCATATGACTGAAGTGTTTCTACTCGAGGTTCTTTAAGCATAGGCTGTAGATATGAACTAATCGAAGACAAAAAAAATGTGCAGTGACACCCTGTAGGCTAAGTTTTATATAATAGAAGCTCAACTCTTATCCCACCATTCAGAATATGTTACAAAATACCTTTGTAATGAAAATCACTAGACGTGTCATTCGTGGTTTTATTTAATGCAAGTGACATATAATTTAGTATTGTCTTGTACTCCATATATCTTCATGTTGATAACATGATAAAACATTTAGCTCCGCGATATCTGACCAAGCATATGCTGGTGTGCAGATCTCTTAAACGTTTTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAATATGAGCAAAAAGTGAAAGGTGATATACAATTCTACTTTTATCTGAGAATGTGAAACCAGTGACCGTAAATCCGTCTTACTTCTTGTTTCATGATCCAGAGTACTGTGAACGGTACGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGATAGTGATGATGAGATTAGTGAAGAGGAGTTCAGTGGACAAAGCGAAAGCGATGATGAAGTTGTTGGACATGCTGATCCTTGAGTGAATAAACTAGGATCCTAAAATGGAGATCATGTTTTTAGTTCATTTTTCTCCTTACATGTAATATCCGATTCGTCGTCGCATGTAAATCTAGGTGCCAAAGATAGTTTAGGGACAATATACATAACCTACAGATGTGTGATGAATCTCAGTCTGTGTAGAAACTCTCTACCTTATGGTCAATGTAACTTACCAATATATGTGTTAAAAATTCAGGTTCTTGTTTTAAA</genome_strand>
        <mrna_strand>TGACATGGTAGGTAGTGGGTTACC-TTTTTGTTGAGCTACAGCCATGGAAGCTATTTTGAAGAAGAAGACAAAGTGCGAAGGACAAATTATCAATTTTTTCAGTAAGAAAAAAAAAAAGCCGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGAGGATCAATAGTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATT.................................................................................................................................................................................GATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTATGAAGGTGGAGTTTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATCGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCT....................................................................................................................................................................................................................GTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTTAAACGTTTTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAATATGAGCAAAAAGTGAAAG................................................................................AGTACTGTGAACGGTACGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGATAGTGATGATGAGATTAGTGAAGAGGAGTTCAGTGGACAGAGCGAAAGCGATGATGAAGTTGTTGGACATGCTGATCCTTGAGTGAATAGACTAGGATCCTAAAATGGAGATCATGTTTTTAGTTCATTTTTCTCCTTACATGTAATATCCGATTCGTCGTCGCATGTAAATCTAGGTGCCAAAGATAGTTTAGGGACAATATACATAACCTACAGATGTGTGATGAATCTCAGTCTGTGTAGAAACTCTCTACCTTATGGTCAATGTAACTTACCAATATATGTGTT-AAAATTCAGGTTCTTGTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339687" ref_strand="+" ref_description="SGN-U339687        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | chloroplast outer membrane protein-related, low similarity to chloroplastic outer envelope membrane protein (OEP75) (Pisum sativum) GI:633607 | chr3:15899943-15902856 REVERSE | Aliases: F26G5.110(evalue: 1e-96, score=350) genbank/nr: At3g44160(evalue: 9e-95, score=350)">
      <seq>cgatcgagcctgcaagttccaactggagcagcaagacaagtataaaatttgaacatattcgtccggaaacccatgagtatctctatttattgaccgaccctcatgggtttccggtgacttgcagtggtggctataatgacagtatggtagtagttaaacaggagtctcgatacgcaaaagcaaacgatcgtagtttttctcaatttagcctgcaaattgaacagggggttcccattctttccaagtggctgatctttaaccgattcaagtttgttgcatcaaggggactaaaacttgggccggcttttctcttgtcaagccttacgggtggttctatcgtgggggatatagctccctatcaagcttttgcaattggcggtcttggtagcgtccgagggtatggtgaaggagctgttggttgtggtagatcttgtctggttgctaacaatgaactgacgtttcctttgagccaggtgcttgatggtgctgtcttcttggattgtggatctgacttgggctcaggtcgtcatgtgcccggaaaccctgctcttaggcttggcaaaccaggaaatggaattggcttcggatatggccttagattcaagtctcagctgggccatttccaggtggactatgcagtcaatgcatttcaacaacgaactgtctacttcggcttcagtaacctcccttcgtgagtcttaaccacaacacttgcaaccatgacataacttatgaacagcgctgcatccatagagaaaatttatgaggatatctgcaagagatcagatgttagggtccgagcagtggtccgtcccttataggaacagcagtgaagatttctttttgaaaacatattgagcaaattagtgcacagaggtggttccattttccctgtacctcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="54586" stop="48517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54287" g_stop="54235" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54234" i_stop="54119" i_length="116">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.869" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54118" g_stop="54048" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="124" r_length="71" r_score="0.732"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54047" i_stop="53966" i_length="82">
            <donor d_prob="0.988" d_score="0.72"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53965" g_stop="53887" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="203" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53886" i_stop="53771" i_length="116">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53770" g_stop="53655" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="319" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53654" i_stop="52497" i_length="1158">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52496" g_stop="52349" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="467" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52348" i_stop="51178" i_length="1171">
            <donor d_prob="0.759" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51177" g_stop="51108" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="537" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="51107" i_stop="49183" i_length="1925">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49182" g_stop="48817" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="904" r_length="367" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-U339687" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>903</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54287" e_stop="54235"/>
          <exon e_start="54118" e_stop="54048"/>
          <exon e_start="53965" e_stop="53887"/>
          <exon e_start="53770" e_stop="53655"/>
          <exon e_start="52496" e_stop="52349"/>
          <exon e_start="51177" e_stop="51108"/>
          <exon e_start="49182" e_stop="48817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCGAGCCTGCAAGTTCCAACTGGAGCAGCAAGACAAGTATAAAATTTGAAGTAAGTGCAAATGATAGAACTTAATGGCAACTCTATACACATGTTATTTAAACTTCAAGTGTGATGCTCTAAGCCTTGATTTTTTAAAGGAAGCGTAAATGTTATTTCTCATGCAGCATATTCGTCCTGTAAGTGATGAGGGTCGGTCAATAAATAGAGATACTCATGGGTTTCCGGTGACTTGCAGGTAGCTTAAACTATGACTTGTTTTTAACTTCTTTTAATTGGATTCTGACTCAGCCTATACTCACAAAATACTTGTTTTGCAGTGGTGGCTATAATGACAGTATGGTAGTAGTTAAACAGGAGTCTCGATACGCAAAAGCAAACGATCGTAGTTTTTCTCAAGTAATTCACTTTCTAAACACAAATGGTGCAAAATTCTCAATTTCTCTTCTATTTTGATATCATAGTGCATACAATGTTCTATATGCTTTCTAAAACATGTTCACACACTTGTCCAGTTTAGCCTGCAAATTGAACAGGGGGTTCCCATTCTTTCCAAGTGGCTGATCTTTAACCGATTCAAGTTTGTTGCATCAAGGGGACTAAAACTTGGGCCAGCTTTTCTCTTGTCAAGGTGAGAGACATTTTTATTTGGACAGTTGAAGATTTGTCAATTTGGCATAGTTGGTTTTTACAACCATGTTCAACCAGTACTGTATTTACTAATCAAACAAAAATGTAAAAATAAATAAAGATAATAAAGCATCCAATTACCACTAGAACAACATATATCAAATAGTGAAAGTTAGCATTCAGTGCTTTCAAGTGTCTGATGATTTATTGGTAAGTTACTCAGGAATTTCTAAATATTAATGTGAGAAACACAAGAGGAAGCATGTAGGAAGTAATGAACTAAAATTACAATAGCACCAGGGAAGCAGTGTAAGGAAGTCAAGGGTGAAAGATGTTTGAAATACGACATGCATCGAGAGAGGTCAAGATCTATGTGCTTTGATATTAATAGAAACAAGTAAACACATGGAAACTGGACTTGGAAATAATAGGAACTCTTGAGATTTTAACTCTACTGTGTTTTCAAGTTTACTTCTCTGTACAAACTCAATATAAAGCAGTAGCTTAAGAATCTGGATTCTGCTTATTTATTTGTTTGTTCTTGATAAATATATCTTCAATTGCTAGTCAGATTTATTAGATTCTACTGTTCTTGAAAAATATCTTTAATTGTTTATTTACATTTACTAGTTTTTCCCGTCTTCTTAAAATGTTAATATTTAGATCTGAGAGAGAAAAACTCTCCATTCTTTCTAGAATAGAACTGTAGAAACTAAGCAAAACATTGATTCTCCAGCAACCAGCCTTCTCCGAAGAGTTTCACTCTGGGCAGCATGGAAGTGGGGAGTATCCACTAATCTAAAAGTTGATAGAGGGGTGATGCTAAATACATTTTCCTCTTGAGTGTTGAGAGAGAAATTATTGAATGGGATACTATATCAATGGTCCCTCAGCACTGGGTTCACATGATTGAAAAGGGAGCAAGGTGTGCTATAGTTATGATTCTAGTCCTATTGCCCACACACTTACGGTCATTGGTGCATGGGTCTTATCAACAAGTTGGGAATATTCTTGAGGACGCATTCATATTGATATTAGTCTTGCAAAAAATCTTAAGCCTTGCTGTTAAACAATGTTTCTTTCCTGTATAGTTTTATTTTCTTGTTTCCTTTCTAATGCATCTTTCCATATGCTAAAGTCCTACTTTTTTCTCTGACAGCCTTACGGGTGGTTCTATCGTGGGGGATATAGCTCCCTATCAAGCTTTTGCAATTGGCGGTCTTGGTAGCGTCCGAGGGTATGGTGAAGGAGCTGTTGGTTGTGGTAGATCTTGTCTGGTTGCTAACAATGAACTGACGTTTCCTTTGGTATGTTTTGATTCGTAAATTGTTAGATCTTTGCCTTTTATGACAGTTGTTTGGTTCCACATCTTGCAAAAGTGTTTCTTATTATCATTCTAGTCTCTTAAGTTCCTTCATGATGCAAAAATATGAATGAAATCTTGCTAATTTCTAATGGTGTGCAATGATTCAGAACCAAACGAATAAAAAGTAACTGTGTAGCACAGACTTGAGAAACGGATCTTCTTATTTTGGTTTTTGAAAAATCTATTGTGTTTAGTATGAAAGAGAATATAGTATTTGAATCTGATTGTGATAAGGTATTATGTAATTAATCTTGCAGCTGGAAATACCAGTGACATTAACTCTTTAATACAAGCAAACTCATAGGATCTTCTGTGTTTGAAATTAATAATGTCATACTTTGTCAATCACTTGAATTTTGTTGGCTTTTGAGCTATGTTGCTTGGACTCATCAAAAATAATTTGCACCCGTGTTGGATCCTCCAAAAATGCATTTTTGAAGGATCCGACACGCATCTGTAGGCACTTTTGAAGAACCCGAGCAACATAACTTTTGAGTGGGACTTGCAATGGCTTAAATATTTTTTTTACGTTGATTCTTTTAGTACCACATGTCTTCTTAGACTTTTGATTAGAACTTTCTTTCATCTTTCTGGAGCATTATAATACAATATTTTATGTTTTAGTAGCAGATAGGGCGGACAGACTCTTAAGTGGTGTTAAGGGGGATGCATGACTTTTTATTGGCAATGTTGTCCTGTCTTAGTTGAAGAATTTGACCTTGAAGAAATGTCCTGTTGTTGTGTAAGAATAGTATTGTAAGATAAATCATCATGTGAGAGTGCTTTAAAGTCAAAAGAACCTTTCTTCTAATTTGAAGAAAAGAATTTTATCAACAAAAGTTAGTTATCAGAATTGATTGTTAAAAAGAAGAGAGGGAACAATTTGTTGTAAGAAATGATGTAACAGTATATCAAAAGTAAAATGCGAGTTGTGTCCTCTTATCTGCGCCTGCAAGAGAAGGAACGGAGTTCCCTTGTTTTATTGGTCGCTTACTTGCTTCCACATTGTCTGTGGAATTAGTATTTACTAGTTTATATACTGCTATGTCTGATCCCTTTGGACCTATTAAATATTATATTGTGGAGTCTCACACCCAATGCTTCTTCTCCAGAGCCAGGTGCTTGATGGTGCTGTCTTCTTGGATTGTGGATCTGACTTGGGCTCAGGTCGTCATGTGCCCGGTTAGTACCTTAGTAATTTTTACATCATGCAGAAGGTTTGCTTAATGTCACTGACTGCTGTTGAAATTTAAGAAAACATTGATTTCGATTATTCCTTTTGGAAATATTTGAGAATGTCTGTTTGTTATCAGTTGGGGTTGGGAAAGGAGGGGCTGCCATTATACATGACAACTGCAAATGATTGTTTTGAGAAATTATTTTTTATAACTATTTTTTTTCTGTGTATTTTGCATTTCTTCTTTCAATTTGTTTGTTTCATGCTTTTTATCTGCCTTACTGCTGTTGGGCCTGTATAGAGTAGGTTACTTGCTGTAAGGTTTTCAACCTTTTGTTTCCCATGAAACTGTTAATGATTTAGCCTATGACTTAAGCAGTAAGCTTAATATGTGCTGGTTATGGTTAACTGCTACTTTCGAGATCTAACTCCATATTTAGGTTCCACTGTAAAAACGTAGATCCTCATATATTCTCACAAGTATCTAGGATAAGTGCGTGAACATAATCCTCATCAGCATGATGATGAGAATATTGACAAAAAATGTGATGGAGTAACAATAGTTGGTTTTGCCAAATCATTTATAAGGGGGCGTAGAGTTTGCTAATTCAGTTGTGTATAGCTACAGAGATAGCATACTCGAAACGTCTCTTAGCAAGATATTAAAATATTTGGATATCATAGTAAAAGCAAACACTTTCCAAATGGAGATTGGAGAAGTTCAATAATATGGGCTGCATAATCTTGATATCCACCCTGACTGTTCTAGCTAAGCTTTGTAGGTCAAATAAAAACATTCATGTTTGGCATTATATGGGTTGTACGTGAATATTAGATCTCTCTTTAATGCTGCAAGTTTGCAAACTGATCGAGACTTGTTCCTTTACCTTCTCAATGTGATGATGAGGTCTGTTGCCTTGATAGCACAAAATAAAGTTTGCTATATCATATGGCGTGTTGGATAATGCAAATAACTTTACTCTCTCAGAACGACTGTGAACTGTCTATAGCTTGGGTTTGTATGAGATAAATTAGGTAGAATTTTCTATTTCTTTTGACCATAAGGCTATTTGTTTCCTTCTTTATGATATCAACCCTCTACAAAACGACCTTCCGCTTATTGTAGTATGATCATGTAGAAGTGTACAACTACTTTATTGATGAGAAAATTGAGACTGGGATAATAAATATGCCTTGCATATCAACCTTAATCAATTAGTAGATATTCTTTTGAGGAGTTCACTAGAAACAATTGGACAATTTAGTGCATAAGCTAGCAATGGAAGATAAACTGATTCTATTTTAAGGGGGTGTATCGAAAAGGAAGGATCTGTGTTTTCCAGATACCAGATTCCTAGAATTATAACTTCATGCCAACGAGAGGGGAAAGTGTTGAAAGGAAAAGAAACTTGGTTCCTTCAGCCAACAGATTCTATAGTATGATATATAAAGTTTCATCATCTTCCCTGTTTATAGATAGAAATATCGACAAGCAAGATAAAGCTTGTATTCTAAATTAAATATACAAGTGAAAAGTTTTTTTAAAATAGGAAGAAAGAAAGAAAGAAAACGAAAAGCTCTGGCCTCTGGAGTTGGTGTAAAATGGCAAGACTTTTCGCAGTAGAGGTTGATATTTGAGTCCGTTACAACAATGGTTACATTTTCTTGGTTTCTTGATCATATGAACTGACTGAACTTCAGCATTCGCACATTACAAGCTCTCCGACTCTCAGAATTCTGGACTTCTATATTATGCTGATTGACTGCTTTCATAACAAATAATGAGACAAGTTCTTCATCATTTCACACGTGTATCCTTCAGAAATGCATACGTAAACGTATTGGGCTTCGCGATATCACTACCCTAGTTTCAGAAGAAGTGTTTCCTAACATATTTTCTTCTAACATTTGAGCCATTGATGCATTTCAGGAAACCCTGCTCTTAGGCTTGGCAAACCAGGAAATGGAATTGGCTTCGGATATGGCCTTAGATTCAAGTCACAGCTGGGCCATTTCCAGGTGGACTATGCAGTCAATGCATTTCAACAACGAACTGTCTACTTCGGCTTCAGTAACCTCCCTTCGTGAGTCTTAACCACAACACTTGCAACCATGACATAACTTATGAACAGCGCTGCATCCATAGAGAAAA-TTATGAGGATATCTGCAAGAGATCAGATGTTAGGGTCCGAGCAGTGGTCCGTCCCTTATAGGAACAGCAGTGAAGATTTCTTTTTGAAAACATATTGAGCAAATTAGTGCACAGAGGTGGTTCCATTTTCCCTGTACCTCTTCA</genome_strand>
        <mrna_strand>CGATCGAGCCTGCAAGTTCCAACTGGAGCAGCAAGACAAGTATAAAATTTGAA....................................................................................................................CATATTCGTCCGGAAACCCATGAGTATCTCTATTTATTGACCGACCCTCATGGGTTTCCGGTGACTTGCAG..................................................................................TGGTGGCTATAATGACAGTATGGTAGTAGTTAAACAGGAGTCTCGATACGCAAAAGCAAACGATCGTAGTTTTTCTCAA....................................................................................................................TTTAGCCTGCAAATTGAACAGGGGGTTCCCATTCTTTCCAAGTGGCTGATCTTTAACCGATTCAAGTTTGTTGCATCAAGGGGACTAAAACTTGGGCCGGCTTTTCTCTTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTACGGGTGGTTCTATCGTGGGGGATATAGCTCCCTATCAAGCTTTTGCAATTGGCGGTCTTGGTAGCGTCCGAGGGTATGGTGAAGGAGCTGTTGGTTGTGGTAGATCTTGTCTGGTTGCTAACAATGAACTGACGTTTCCTTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAGGTGCTTGATGGTGCTGTCTTCTTGGATTGTGGATCTGACTTGGGCTCAGGTCGTCATGTGCCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACCCTGCTCTTAGGCTTGGCAAACCAGGAAATGGAATTGGCTTCGGATATGGCCTTAGATTCAAGTCTCAGCTGGGCCATTTCCAGGTGGACTATGCAGTCAATGCATTTCAACAACGAACTGTCTACTTCGGCTTCAGTAACCTCCCTTCGTGAGTCTTAACCACAACACTTGCAACCATGACATAACTTATGAACAGCGCTGCATCCATAGAGAAAATTTATGAGGATATCTGCAAGAGATCAGATGTTAGGGTCCGAGCAGTGGTCCGTCCCTTATAGGAACAGCAGTGAAGATTTCTTTTTGAAAACATATTGAGCAAATTAGTGCACAGAGGTGGTTCCATTTTCCCTGTACCTCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339686" ref_strand="+" ref_description="SGN-U339686        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | chloroplast outer membrane protein-related, low similarity to chloroplastic outer envelope membrane protein (OEP75) (Pisum sativum) GI:633607 | chr3:15899943-15902856 REVERSE | Aliases: F26G5.110(evalue: 2e-139, score=492) genbank/nr: At3g44160(evalue: 1e-137, score=492)">
      <seq>ggaaaactcattaataggctaatgggtgctcagaaaagcattcatgctggcaaagctaaaatagatgtcaacgtggatttcacccataaactatgtgctgctttgatgctccagcctttcaggaattctggcagtccccttgaattggtaattggcagtctttgcataaaacacccaaatttatttggcaagagcgagaagctagatgttttgtgggataaaggactctatgattccaatatcttgattacttatcggaagccaagaccagaatggcttgctcaacagtcttttgttgttcagcattccatttctcccgagattggggtacatggcttaccagatgacaacttctctcgatcaggaagtggtggagttaacttatctcgcttatctgctggcttagatttgagcgagcctgcaagttccaactggagcagcaagacaagtataaaatttgaacatattcgtcctgtaagtgatgagggtcggtcaataaatagagatactcatgggtttccggtgacttgcagtggtggctataatgacagtatggtagtagttaaacaggagtctcgatacgcaaaagcaaacgatcgtagtttttctcaatttagcctgcaaattgaacagggggctcccattctttccaagtggctgatctttaaccgattcaagtttgttgcatcaaggggactaaaacttgggccggcttttctcttgtcaagccttacgggtggttctatcgtgggggatatagctccctatcaagctttttgcattgccggtcttggtagcgtccgagggtatggtgaaggagctgttggttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="57541" stop="52093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56701" g_stop="56647" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56646" i_stop="55335" i_length="1312">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55334" g_stop="55268" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="122" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55267" i_stop="55168" i_length="100">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55167" g_stop="55132" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="158" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55131" i_stop="54975" i_length="157">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54974" g_stop="54830" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="303" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54829" i_stop="54394" i_length="436">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.571" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54393" g_stop="54235" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="462" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54234" i_stop="54119" i_length="116">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54118" g_stop="54048" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="533" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="54047" i_stop="53966" i_length="82">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="53965" g_stop="53887" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="612" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="53886" i_stop="53771" i_length="116">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="53770" g_stop="53655" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="728" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="53654" i_stop="52497" i_length="1158">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.937" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="52496" g_stop="52393" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="832" r_length="104" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-U339686" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56701" e_stop="56647"/>
          <exon e_start="55334" e_stop="55268"/>
          <exon e_start="55167" e_stop="55132"/>
          <exon e_start="54974" e_stop="54830"/>
          <exon e_start="54393" e_stop="54235"/>
          <exon e_start="54118" e_stop="54048"/>
          <exon e_start="53965" e_stop="53887"/>
          <exon e_start="53770" e_stop="53655"/>
          <exon e_start="52496" e_stop="52393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAACTCATTAATCGGCTAATGGGTGCTCAGAAAAGCGTTCGTGCTGGCAAAGGTTTCTTCTTTTTCTCTTTCATTTTTCTTGAATAAAACTCATAATTTATTATCTCATAACTCTCTGGAATTTGTGTTTTTTGGGAGTGTCAAAGAAGGGTATCTACAGTTTTGGTGTTCTTTTTGTGGTGCCTAATGCAAATGTTGTTTTGGTTGGATATAGTGGATGCTGGTAGTTCTTTTATGTGCTTTATATTGTAAAGATTGAATTTTCAGTCAATTTTAATGGTGAGGAACTCATTAATGGGCTAATGGGTGCTCAGAAGAGCATTTATGCTGGCAAAAATTTCTTCTTTTTCTCCTTCATTTCTTGAATAAAATCCATAATTTATTATCTCATAACTCTCTGGAATTTGTGTTTTTGGGGAGTGTGAATGAAGGGTATCTATAGTTTTGGTTTTCTTTTTGTTGTGCCTAATGCAAATGTGGTTTTGGTTGATTATAGTGGATGCTGATAGTTCTTTTTTGTGCTTTATATTTTAAGGATTGAATTTTTAGTCAATTTTAATGGTGGGAACTCATTTATAGGCTAATAGGTGCTCAGAAAAGCATTCATGTCGGCGCCTTTATTTCTTGAATAAAACCCAGAATTTATCATCTCACAACTCTCTGAAATTTGTGTTTTATGGAGTGTTTTCGGGTGTCAATACAGGGTATATATAGTTTTGGTTTTCTTTTTCTTGTGCTTATGCGAATGTGGTTTTGGTTGGCTACAGTGGGGGCTGATAGTTCTATTTTGTGCTTTATATTGTAAAGATTGAATCTTGAATCAGTTTGAATGGTGGGTAACTCATTAATAGCCAAGGTCTCTTCTTGTTCTCCTCCATTTCTCAAATAAAACCCACAATTTATTATCTCATACTTAAGGTGTGGCCTAGTGGTTCATGAAGTGGTTTGAGAATCATAAGGTCTAGTGTTTAAATTCCAACAGACACAAAAAAACAGTAGGTGATTTCTTCTATCTGTTCTAACCTGTACCTATCGCTGGTGGGACTGGTGGGAGGTGACAAGTATCCCTTGGAACTCGTTATGCGCAAGCTTGCCTGGACACCACGGATATCAGAATAAATAAATAAAATTTCTTGTCTCATAACTCTCTAAAGCTTGTGTTTTATGGGGTGCCAATAAAGGATGCCAGTCGGTTCTGGTTTGCTATATGTTTGCAAAGCTTGAAAATTTCTTTTGAATTGTGCCTATGCAAATGTGTTTTTGGTTGGCCATAGTGGATGCTGACTGATAGTTCTTTTTTGTGTTTTATTTTGTAAAGTTGAGTTCTTATTTGCTGTCTTGAATTTGAATTGGTCTTCTTGCAGCTAAAATAGATGTCAATGTGGATTTCACCCATAAACTATGTGCTGCTTTGATGCTCCAGCCTTTCAGGTTCTTACATATTAAAGCACTTATGCCAATTGATTTTGTATTTATCAGTTCTTAACTCTTCGTTTCTTTCTACATATTGCTGTACTGTCTCCTCAATCAGGAATTCTGGCAGTCCCCTTGAATTGGTAATTGGCAGGTAATACAATTTTCTCATGTCCTACTCATGAAACTTTTAGCTTCTTTTTGTTTCGGTTATAATTTTTTGTTGTGGCTTGTAAGAATGGAGGGTTTCGGTTTAAACTGTTTTTCTTACTCATACTTGGATTGATAATATTTTGCTTTTATCATTGCAGTCTTTGCATAAAACACCCAAATTTATTTGGCAAGAGCGAGAAGCTAGATGTTTTGTGGGATAAAGGACTCTATGATTCCAATATCTTGATTACTTATCGGAAGCCAAGACCAGAATGGCTTGCTCAACAGTCTTTTGTTGTTCAGGTGTGCTATACTGAAAAATTTATATTATCTTGTTTTACTTATTTATTATTATCTTTTTGTCAAAGAGGAAAAAACTCTCTAGGACTGAATATTTTGCATTTTGAAATAGTCTGGTTCATGAAGGGGTTGTGGAACTCATTTGATTGGAGTTCAAACTAAATATGTAGGTCTGAGTATGTTTAAGATGAGCTATTCCACTTCCCATTGTTCTTAGAATTTTATTACTAAAGTTGAATCAGTTATAAAGAGGACCATATTGCGGTGAAGAGCACTAATCTTGGTAAAATATCTGCCTCGGAGTCGCATTTATTTGAAATGAGAACTAAATCAACTTAATTTTAGTGTTAGCTTGGGAGTAGACTTAACGACAACTTATTGTTATGTATGGAAATTCTGACACATCATGGACTTCAATCCGAATTATCTTGTTGTCCAGCATTCCATTTCTCCCGAGATTGGGGTACATGGCTTACCAGATGACAACTTCTCTCGATCAGGAAGTGGTGGAGTTAACTTATCTCGCTTATCTGCTGGCTTAGATTTGAGCGAGCCTGCAAGTTCCAACTGGAGCAGCAAGACAAGTATAAAATTTGAAGTAAGTGCAAATGATAGAACTTAATGGCAACTCTATACACATGTTATTTAAACTTCAAGTGTGATGCTCTAAGCCTTGATTTTTTAAAGGAAGCGTAAATGTTATTTCTCATGCAGCATATTCGTCCTGTAAGTGATGAGGGTCGGTCAATAAATAGAGATACTCATGGGTTTCCGGTGACTTGCAGGTAGCTTAAACTATGACTTGTTTTTAACTTCTTTTAATTGGATTCTGACTCAGCCTATACTCACAAAATACTTGTTTTGCAGTGGTGGCTATAATGACAGTATGGTAGTAGTTAAACAGGAGTCTCGATACGCAAAAGCAAACGATCGTAGTTTTTCTCAAGTAATTCACTTTCTAAACACAAATGGTGCAAAATTCTCAATTTCTCTTCTATTTTGATATCATAGTGCATACAATGTTCTATATGCTTTCTAAAACATGTTCACACACTTGTCCAGTTTAGCCTGCAAATTGAACAGGGGGTTCCCATTCTTTCCAAGTGGCTGATCTTTAACCGATTCAAGTTTGTTGCATCAAGGGGACTAAAACTTGGGCCAGCTTTTCTCTTGTCAAGGTGAGAGACATTTTTATTTGGACAGTTGAAGATTTGTCAATTTGGCATAGTTGGTTTTTACAACCATGTTCAACCAGTACTGTATTTACTAATCAAACAAAAATGTAAAAATAAATAAAGATAATAAAGCATCCAATTACCACTAGAACAACATATATCAAATAGTGAAAGTTAGCATTCAGTGCTTTCAAGTGTCTGATGATTTATTGGTAAGTTACTCAGGAATTTCTAAATATTAATGTGAGAAACACAAGAGGAAGCATGTAGGAAGTAATGAACTAAAATTACAATAGCACCAGGGAAGCAGTGTAAGGAAGTCAAGGGTGAAAGATGTTTGAAATACGACATGCATCGAGAGAGGTCAAGATCTATGTGCTTTGATATTAATAGAAACAAGTAAACACATGGAAACTGGACTTGGAAATAATAGGAACTCTTGAGATTTTAACTCTACTGTGTTTTCAAGTTTACTTCTCTGTACAAACTCAATATAAAGCAGTAGCTTAAGAATCTGGATTCTGCTTATTTATTTGTTTGTTCTTGATAAATATATCTTCAATTGCTAGTCAGATTTATTAGATTCTACTGTTCTTGAAAAATATCTTTAATTGTTTATTTACATTTACTAGTTTTTCCCGTCTTCTTAAAATGTTAATATTTAGATCTGAGAGAGAAAAACTCTCCATTCTTTCTAGAATAGAACTGTAGAAACTAAGCAAAACATTGATTCTCCAGCAACCAGCCTTCTCCGAAGAGTTTCACTCTGGGCAGCATGGAAGTGGGGAGTATCCACTAATCTAAAAGTTGATAGAGGGGTGATGCTAAATACATTTTCCTCTTGAGTGTTGAGAGAGAAATTATTGAATGGGATACTATATCAATGGTCCCTCAGCACTGGGTTCACATGATTGAAAAGGGAGCAAGGTGTGCTATAGTTATGATTCTAGTCCTATTGCCCACACACTTACGGTCATTGGTGCATGGGTCTTATCAACAAGTTGGGAATATTCTTGAGGACGCATTCATATTGATATTAGTCTTGCAAAAAATCTTAAGCCTTGCTGTTAAACAATGTTTCTTTCCTGTATAGTTTTATTTTCTTGTTTCCTTTCTAATGCATCTTTCCATATGCTAAAGTCCTACTTTTTTCTCTGACAGCCTTACGGGTGGTTCTATCGTGGGGGATATAGCTCCCTATCAAGCTTTTGCAATTGGCGGTCTTGGTAGCGTCCGAGGGTATGGTGAAGGAGCTGTTGGTTGTG</genome_strand>
        <mrna_strand>GGAAAACTCATTAATAGGCTAATGGGTGCTCAGAAAAGCATTCATGCTGGCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAATAGATGTCAACGTGGATTTCACCCATAAACTATGTGCTGCTTTGATGCTCCAGCCTTTCAG....................................................................................................GAATTCTGGCAGTCCCCTTGAATTGGTAATTGGCAG.............................................................................................................................................................TCTTTGCATAAAACACCCAAATTTATTTGGCAAGAGCGAGAAGCTAGATGTTTTGTGGGATAAAGGACTCTATGATTCCAATATCTTGATTACTTATCGGAAGCCAAGACCAGAATGGCTTGCTCAACAGTCTTTTGTTGTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCATTTCTCCCGAGATTGGGGTACATGGCTTACCAGATGACAACTTCTCTCGATCAGGAAGTGGTGGAGTTAACTTATCTCGCTTATCTGCTGGCTTAGATTTGAGCGAGCCTGCAAGTTCCAACTGGAGCAGCAAGACAAGTATAAAATTTGAA....................................................................................................................CATATTCGTCCTGTAAGTGATGAGGGTCGGTCAATAAATAGAGATACTCATGGGTTTCCGGTGACTTGCAG..................................................................................TGGTGGCTATAATGACAGTATGGTAGTAGTTAAACAGGAGTCTCGATACGCAAAAGCAAACGATCGTAGTTTTTCTCAA....................................................................................................................TTTAGCCTGCAAATTGAACAGGGGGCTCCCATTCTTTCCAAGTGGCTGATCTTTAACCGATTCAAGTTTGTTGCATCAAGGGGACTAAAACTTGGGCCGGCTTTTCTCTTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTACGGGTGGTTCTATCGTGGGGGATATAGCTCCCTATCAAGCTTTTTGCATTGCCGGTCTTGGTAGCGTCCGAGGGTATGGTGAAGGAGCTGTTGGTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328442" ref_strand="+" ref_description="SGN-U328442        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT5G12060.1 | Symbol: None | self-incompatibility protein-related, contains similarity to S3 self-incompatibility protein (Papaver rhoeas) GI:1107841 | chr5:3894920-3895372 REVERSE | Aliases: F14F18.4 (evalue: 6e-10, score=60.8) genbank/nr: gi|1107843|emb|CAA60579.1| S3 self-incompatibility protein [Papaver rhoeas] >gi|1107841|emb|CAA60578.1| S3 self-incompatibility protein [Papaver rhoeas] (evalue: 1e-19, score=99)">
      <seq>gaaaacttttaattgcaatttttacatttttcttcttcttattcttcctcttatttttgaatcatgttgtttagcaagagttcaagttcatattatcaacaagcttcctgatggactggcaatgactctccattgtcaatctcatgacaatgatttaggacagttgagattgacgggaggtgacgaagctagttggacttttagtgttaatttttggggcaccaatatgttttattgcgacgctcaatgggatgatagttccacaacatatcgttttgttacttatgatgccgctcgggatgcccgacgatgtcaaacggaatgctggtggatgatctctgaagaagaaacgttatatggttataatcaagagagtgaatactgggagttgtttcccttcaccagtgcataaaatctcttaatgatgcctattatcttcgtgtgtgtttaaaaaattatcaatttttcgtatttaagattaaccaaatccaattatcgttacttcgtacaatgtaaggttgttcggtgatcaacacatgtaacatgtacaaggcaatatgatatttatatatagttactattacttacaatttcatcattgctgcaaaattatcttaatataattataaagtttgattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="58365" stop="59604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58665" g_stop="59304" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="641" polyA_stop="655"/>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-U328442" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58665" e_stop="59304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACTTTTAATTGCAATTTTTACATTTTTCTTCTTCTTATTCTTCCTCTTATTTTTGAATCATGTTGTTTAGCAAGAGTTCAAGTTCATATTATCAACAAGCTTCCTGATGGACTGGCAATGACTCTCCATTGTCAATCTCATGACAATGATTTAGGACAGTTGAGATTGACGGGAGGTGACGAAGCTAGTTGGACTTTTAGTGTTAATTTTTGGGGCACCACTATGTTTTATTGCGACGCTCAATGGGATGATAGTTCCACAACATATCGTTTTGTTACTTATGATGCCGCTCGGGATGCCCGACGATGTCAAACGGAATGCTGGTGGATGATCTCTGAAGAAGAAACGTTATATGGTTATAATCAAGAGAGTGAATACTGGGAGTTGTTTCCCTTCACCAGTGCATAAAATCTCTTAATGATGCCTATTATCTTCGTGTGTGTTTAAAAAATTATCAATTTTTCGTATTTAAGATTAACCAAATCCAATTATCGTTACTTCGTACAATGTAAGGTTGTTCGGTGATCAACACATGTAACATGTACAAGGCAATATGATATTTATATATAGTTACTATTACTTACAATTTCATCATTGCTGCAAAATTATCTTAATATAATTATAAAGTTTGATTAA</genome_strand>
        <mrna_strand>GAAAACTTTTAATTGCAATTTTTACATTTTTCTTCTTCTTATTCTTCCTCTTATTTTTGAATCATGTTGTTTAGCAAGAGTTCAAGTTCATATTATCAACAAGCTTCCTGATGGACTGGCAATGACTCTCCATTGTCAATCTCATGACAATGATTTAGGACAGTTGAGATTGACGGGAGGTGACGAAGCTAGTTGGACTTTTAGTGTTAATTTTTGGGGCACCAATATGTTTTATTGCGACGCTCAATGGGATGATAGTTCCACAACATATCGTTTTGTTACTTATGATGCCGCTCGGGATGCCCGACGATGTCAAACGGAATGCTGGTGGATGATCTCTGAAGAAGAAACGTTATATGGTTATAATCAAGAGAGTGAATACTGGGAGTTGTTTCCCTTCACCAGTGCATAAAATCTCTTAATGATGCCTATTATCTTCGTGTGTGTTTAAAAAATTATCAATTTTTCGTATTTAAGATTAACCAAATCCAATTATCGTTACTTCGTACAATGTAAGGTTGTTCGGTGATCAACACATGTAACATGTACAAGGCAATATGATATTTATATATAGTTACTATTACTTACAATTTCATCATTGCTGCAAAATTATCTTAATATAATTATAAAGTTTGATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326364" ref_strand="+" ref_description="SGN-U326364        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | GTP-binding family protein, contains Pfam domain, PF01926: GTPase of unknown function | chr1:2646186-2649376 FORWARD | Aliases: T27G7.9, T27G7_9(evalue: 3e-112, score=402) genbank/nr: gi|15223206|ref|NP_172317.1| expressed protein [Arabidopsis thaliana] gi|6664306|gb|AAF22888.1| T27G7.9 [Arabidopsis thaliana](evalue: 2e-110, score=402)">
      <seq>gctgctcctccgccgccgccgcctaccttcaccgccgtcatctaccaccgactacggtgaccaaaaagtcacaatctttgaatactcatatagtttctgtaactgggttttcactttttttttttgttaagctaattgaatttgaagagaaaaggagtaatgggtaaaggagagaaaagttcgttaggtagggcactggtgaagcaccataatcagatgattcagcaatcgaaagataagggtcgagtttataggaatcataataagaaggttctggaatctgtaactgaagttactgatttagaagctgtaatagaacagacagatgaagctcaccgtctctattctgaccttaatcctcctgttaatcttctcgtcaatctggactctggctctagttctggtgatatgcgacctgaagaaagattgaagcagcagaagaaagaggaggctttgcatgctagtagtcttcgcgttccacgcaggcccccatggaatactaaaatgtccgtggaagagcttgatattaatgaaagacaagcttttctagcttggcgacgcaatcttgcaaggcttgaagagaacgagaaactggttctcaccccttttgaaaagaacctggatatctggagacagctttggagagttgttgagcgtagtgatctgcttgtaatggttgttgatgcacgtgacccacttttttatcggtgtcctgatcttgaggcttatgcactagaagtcgaccaacacaaaaaaacaatgcttcttgttaacaaagctgatcttttacccatttctatcagaaagaaatgggctgaatacttccaccagcaagggattctttttcttttctggtcagctaaagctgcctctgctgctctcagtgcttcagaagtaccaatgagctctcaagaggcaggtgatgctgatacgaaaatattaggcagggaggagctattggcccgcttacagtctgcagcagaggagatagttttgactaagaataggttagcttctgatgctgatgagaacttggcagaagatgttcagtctacaagtgtgatggtggggtttgcggggtatcctaatgttgggaaaagttcaacgattaatgctttggtaggggaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="59565" stop="68458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59865" g_stop="60247" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60248" i_stop="64879" i_length="4632">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64880" g_stop="64981" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="485" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64982" i_stop="65056" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65057" g_stop="65143" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="572" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65144" i_stop="65784" i_length="641">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65785" g_stop="65878" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="666" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65879" i_stop="67286" i_length="1408">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67287" g_stop="67343" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="723" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67344" i_stop="67659" i_length="316">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67660" g_stop="67739" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="803" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67740" i_stop="67830" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67831" g_stop="68158" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="804" r_stop="1131" r_length="328" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-U326364" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1131</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59865" e_stop="60247"/>
          <exon e_start="64880" e_stop="64981"/>
          <exon e_start="65057" e_stop="65143"/>
          <exon e_start="65785" e_stop="65878"/>
          <exon e_start="67287" e_stop="67343"/>
          <exon e_start="67660" e_stop="67739"/>
          <exon e_start="67831" e_stop="68158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTCCTCCGCCGCCGCCGCCTACCTTCACCGCCGTCATCTACCACCGACTACGGTGACCAAAAAGTCACAATCTTTGAATACTCATATAGTTTCTGTAACTGGGTTTTCACTTTTTTTTTTTGTTAAGCTAATTGAATTTGAAGAGAAAAGGAGTAATGGGTAAAGGAGAGAAAAGTTCGTTAGGTAGGGCACTGGTGAAGCACCATAATCAGATGATTCAGCAATCGAAAGATAAGGGTCGAGTTTATAGGAATCATAATAAGAAGGTTCTGGAATCTGTAACTGAAGTTACTGATTTAGAAGCTGTAATAGAACAGACAGATGAAGCTCACCGTCTCTATTCTGACCTTAATCCTCCTGTTAATCTTCTCGTCAATCTGTAAGTCCCCTATAATTAATGTTTATTTTTTGGTATTTTTATGAATTTACTGTTTACTTTTTCGAGCTCGTATACATAGATTATACATTGTTGTTGTATATGTGTTACATATATTAGTCATTGGTGGTGTCCGTACAAGTTTGTCCGCAGCTCGACTAATTCTTGTTCAGCAAGGCTAGGTTAGAATAGATAGGAAGAAAGCACCTGTTTTGTCTCAATTGGGATTTGAACCTAAGAAAGAATGGTTATGGCTACTCTTTGTTGCATGCTGAAATATAGAAAATTATTTTTAATTAATAGACTAAATAAAATCAATATAAAAGATGGGTAGCTAATTAATCACAGTCTTTAGATGAATGATTTAAGATTTTAGTTGATCACAGTCTTTATTAGGACAATCTAAAAATCACCACCCCTGAAACCTCAATTTTGGTTTTTTCTTTTTGTATCTGTCTATCTATATAACATACAAGTTCAAAAACAATAGAACTAACTTTGAGATCAAGATGAAAACTTTCAAGTGCAATTTTTACATTATTTTTCTCCTGTTTTTTCTTTATGTACTTACTTTTGGATCATGTTCTTTAGCAAGAGGGATTAGTATACATTTGCCAGGGAACAGAAGAGTCCAAGTACATGTTATTAATAGGCTACCAGATGGAATTCCCATGACTCTCCATTGTCATTCTCATGACAATGACCTAGGGCAATCAATATTGGAAGAAGATGATGAATTTAATTGGAATTTTAGAGTTAATCTTTGGGGTACTACTTTATTTTATTGTGACGTTCAATGGGACAGCGATGATTCCATTTGGAACCATTTTAATGCCTATGATGCCGATAGGGACTATCGACGGTGTCGGTCGGAATGTTGGTGGATGATCTCACAAGAACAGTTGTTGTATGGTTATAATCAAGAGAGTGGATACTGGGAATTGTTTCCCTTCACCAATGCATGAATACTCTTAATGGCGCTTATTCCCCTTGCGTGTTGTTTAAAAATTATAGTTTTTTCATGTTCGAAACAAGAACTAATTGTCATGTCCAACTTACCTACATGTTTTGTATATATATGCTTTAGTTATGTGTGATCTCATAGGTCAATCAGAACTTGAAGACAACCATTATTGTCCATGTTTTGGCTTTCAATGAGATTAATTTCTTAGGTTTTACCGTCTTTTTGACTTTTTTCATTGATAAAAAAAAATGTGATATTGCACCTTGTAGTGCTAAAAAAATTACATTTAGTGAACAAAGAAAAGTAAACATGAACCATGCATGTTTTAGAGAGAATTACCATACGAATAATTATAATATTTATAACTGCTGCTCCTGTTAGTTGTCCTTCCAATTTAATTCATTGCCTTTTTTTGGTTTTATATTTTGTCCTTTTAGTTTATATTTAGCTTAGAATAGTGTCTTTGACATTGTCAAGAAAGAACCATCACTACTCCACATCATATAAGGCTATTTAGAAATTGGCACATGTAACACAAGGTGATATGAAATTTACATGCATCCATTCTTAATTGAAATTATTTTACTATAAAAAGGAAATTTACATAGACAGTTTCCAACATATTATGTTGGAGTTTAAAAACTTCTTGCATGTGAAATTTAAACACGGTATGATGGAGTTTCAAAATTTTACATCTGAGACTCCACAATATGCTGTTCATCTGTATGTGAAACTCAGTATATTTTTTTTTATAAATGATGCATTATATAAGTAAATGGGTAAGACATTGTGTCTATTGTATACCTAGTTTGTTCGCCCAGTAACTAGGTATTGACATACACTGGCCTCAAAATCAGGAGTTGAAATTTTGGAGAGGAAATATCATATCTAAGCGAGTAGAAATAGCTATAATATTTCCGATAAATATGGAATTTTGCAGTTACTTTTCAAACTAAATGAAAAGATCGGTAATTTTTTGTTGATATTCTTCTCTTCTAATTTATTTTGTTAATAAATCATGTCGTTCTGAATGTGTGTGTTCTCCCCCTTCCTTTTTTTTTTTGGGTTTAGGGGTTGGTTCAGTGCTAGAGAGTTGATGCTTGCTGGTTGCTTGGTTCGATTTTTTGATCGAGTTTCTAGAAAAAAAAACAGAGAAATTTGGGTACTGGATGAGGTTGGGACTTCTTTTTTGTCAACATTTCGTAGTGTCATGGTTATATCGAAGCCAAGATCAATTCGTGGTAATTTTCTCAGGTGCAACATAGAAGAATCTTAGAGTAGAAGAACAAAATGAAAAAATGCAGAATAAGTGCCCTTTTTTTCCCCATTCGGAACAATTACCTTACTGTTCTGTTTTTTCAGCTGTGAGCCGTTCATTTTAGCTGAACTATAGAGTGAAAGGGGTTTGAATCGTTGTTACAATCATATGCATCATTTTCAATGAGGCCAAGAGGCCAAGTCTAGCACTGCTGACAACTTGTTTTGCCATGTTAAATAGTTATGGGATGGTAAAGGAAGGATTTGCTATCGCAAAAATCCATACTAAAGGAAGGAGTCCCTTTTTCCATGGCACAGCCTCAGTTGCTTTGATGGAATGCTTACATGAAAGGCTTAATTGAGTGTTGCGGGTAGAATTGCTGTATGAGGAGTCCACTTAAAATAAAAGGAAACAAAACACACACATCATCTTTCAAGAAAGAAATGGGAAATAATGTTCGTTGTTTCCCAAATTGATTCTGAAGACTTAATTTCATAAAGCTTGTATGTTTAGTTAAAATGGAAAGGAAGCATCGCAAGATGCTTTGAAGGGCTGTACAGAAAGTGAAGTATACTTGCTTATGGATTTGGGGTTTTGGATGTAATCTACAATACATGAAAGATTAAAATAGCATGTTTTGACTGTATGGACTCACTACAGGAGTAGGGTCTTAGTTAGGTGGAATTTTTTTGTTTTGTTTTGTTTTGTACTGAAAGGCTTTTATCTCCGTAATCCCTGGCACTAGCTAGGTGCCAAATTTCTGTTTTTTATAGAATTACTACTTACCGGTTAAAAAAAAAAAGAAGGAAGAAGATACATTTCCGGAGTTAACCATTGACTCTCTTATGTAACTACTCTGCTTGATGCCCTGCTATGATAACACCTTACTTCATCAAAAAAAAATAATAATTAAGGATGATGAAGATAGATATTCATAAACCTACTGTCTCATACCTTCCCCTGTTATTGCTGACAGTAGGTCTCTTAATCTTGTAAATTTTCAATGACTTACTAGAGTGGGATTTCCTGTCGCTCTTGCATAGTCATTGGCTCAATGCATCAGAGATGTATGCTCCTAGTTTTGAAGGCATAGAACTTATGGATTGTTCTAGTTCAGAAGTGTCTTTTCTGAACGCTTCTATATCTAATGAACTGTAATAAACTAGTAGTTAAGAAATCTCGAGGGCTTTGTCTGATGGGCATCACGTAAGTATATAGCACCAGAATCCTAAAAGTAGATTTGATCCAGAAGGAAGTGTCCATTAACATATGTAACTGTGCTCTAACTCTATTTGAGAGATCCAAATATTGTTAACGTTGGGAATGACTTGATTGGTGTGGATGAAGTAGTGAATTTGAAAGGAAGTGGAACGGTAACACTGTTGATATGAACAGAGAAGGAAATTGTTTCAAGTCTTACATATTCAGTGAATGGGAAGTATATCATATCTCCATCAGAAATTATTGTGATTCAGGGTTTCCACATCTTGTTTTATTGCAGCCTTTGCTGTTGGAAAATATATACATAGAAGAGGACAAAGATGAAGTTTTGATAAAATGAACAGCGGACATAGACTTTCCTAAAAATGATATTTGCTCCCTCTCCTCTTTGAGATTGCTATTGGATTGCACGCAAAATAGTTTTGGTGGGTATGACAAGCCCATGAATTTCTGCTCTAAGCAAATAGTGAAGAAATACCATTAGAAAGCAAGTATTTGAACTTGGTCTTTTGGAGAAGAAAAAAATTCTCTGGATAATGTTGTGAAGAAAGATACTTTGTTAAAATATGTTGGAACCTGCAGAAGTTGAATTTAAATAGAACCGGTCGTAACCAAAGAAGGAAAGGGCAGAATCTTTTATTTAAAAGACACAGCCTTTCATTTAAAATACTCATTAGTAATTTAATTTATACAAAATTCTAACCTTTGCTATGTTGTATTTGTTTTGCTTGAACTCCTGTAATCAGTCGACACTACTGAGCAGAACTATTATGGTCTCTGTAATAGAGGTTTGGATTAAATAGGTAAATCATAAAATTGCTGATTATGTTTCATAGTCAGCCCTGTAAAAGTTAGGTCATTTGGATGAACTTCTCTCTTCAGATTGAGTTATCTTGATTTACCATGTGAAATTCACAGTTGCATTATTGTGCCAAATTTACTTCTCTAATTTTTATAGTATATGTTAGTGTAGTGTAGTGTTGACCGAGATCCTATAACAAGTGGCTTCATCTCTAAGAATCTATTTTTTAGACTATTTCCCTTCTCATCTTTGACCTGGCTATTTTTTGCTGATTTTTTCCCTTGACTTTTTGTTATCGTGGCTCTGCGTGTTAGTGTCCTCTCTGACAGAATTGAAAGATTACATACCTTTTAAACTAATGGTTGTTGTTGCCTGACTTTGTCATAAAAGGGACTCTGGCTCTAGTTCTGGTGATATGCGACCTGAAGAAAGATTGAAGCAGCAGAAGAAAGAGGAGGCTTTGCATGCTAGTAGTCTTCGCGTTCCACGCAGGTAATTGTTCCCTTTCTTAATCTAGTGCACTATCTGGTGTTCTGCTCCAAGGTTCTGAAGTACCTTTTTTTCCAGGCCCCCATGGAATACTAAAATGTCCGTGGAAGAGCTTGATATTAATGAAAGACAAGCTTTTCTAGCTTGGCGACGCAATCTTGCAAGGTCAGTGCTATTAAAAGACATTTTACTACTGTGCTACATATTGAATGCATGTTTGTAAATATTATTGCTTTCCTCTCTTTTTGGCGGAGGGGGCAGGGACTATGAATGTTGCATTCATTTTCCTCTTGAAACTGCTTCAATGTTGGTTACTATGATTTTTTTTCTTTGTAGTGTTGAAGGTAAATGTTAGTTACTATGGGTTATGTAGGTAAGCACAGATTAAGCCAGTAAGTTGCCTGGTTTATATTCCAAGCATTTGTATCTCCCCTCAAAGTTTTATTAGTTAACCATTATTTTCATATGCACTTAAAAAACCTTACAAATTCCATCGCTTCATAGTGAGTTCATGTGTGATGGAGTTATGACCAGAAAATGCTTCAGTAATACATTGAAATCCTTTCAAATAGGCTCCCATCTTAGAAGAAGAAATCCAATTAGTGGATTTTATATGATCCTTATAACTATCCATGACTCTTTTGTAATTCTTTGGAGGTGCCCAGCATAGCCCTGAATGCTAATGAATACTACTTTTACCAATCTCAAAAAAAAGAAAAAGGGTCTCATCTTATGTTGGACTACGGCATTACATGTGAATTTTGTTTATGTACATATTTGTCTCTAACCATTCTAAATTTATATAGGCTTGAAGAGAACGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTGTTGAGCGTAGTGATCTGGTGAGATTTTGGTCATTTCTACCTCCTATGATCTTAATGGATAAAATGTTCAGTTGGCAGTTAAACAGTTAGCACCTTCTACTGGTTACTTCTTATGCTTAGTTCTTGTGTAGTTTATTTGATCTAATTATGTAGACTGGAACACTGAGAGTAACTGTTTCTCCAAATTTAAGGTTGCTTTCTATTGAACATATCAAACTAGAGTTAAATTTTTTGTAAAGAAGCCTGAAAGTGCTTGGTAAGAGAGTATGAAGATTGGTTGGTCTGGTATGTAATAGCATTTCTAGCCTTGTTAAAGATATTTTCCCCATGACAAATTGCCTGTGTCAACATTGTTAAAATTTGGCCTAGTGATTGGGCTGTAAATGTTTGAGCCATGAAAACTGTAAGAACCTTTTGTGCTTTAATCTGAATAGTCAATTATTCTTGGCCTACACGTTGCTTCCATGCTTCTTATATCACAGTTTCCTTATATATTATTTGCCTCTTACTAATTTCTGGATTCCCACAGTTTTAGTTCATTGGTCTTTTTAAATGAAAAGGTGAAATTTCATCAAAAAAGTACCACAGTTTTATAGATCGATTGTATCTTTTAAATTAATTAGGCAATAATGTGTCTGAACTTCGAAAATGTCCACTGTGTTTTCCAAGTTCCAAATATTGGATAATATCAGCAATAATAACTATTGAAAATTCCAGCATCAAGTATGCTTTTTTGCTTTGTTGAACAATTTTGACTTCGCAAAAGAAGTATATGTAAGCAAAGAGCTTAAAAACATGACTGCGGACCCCTTCATTAAGACCTGTCCTTTCAAGCTCTTCGGACAATAGTTTGTCGATAGGATTTATCTTTTTTATCTTTCCTACTAATGATATTCCCCCCATTTATTATCTGGAAAGAGAGAAATCTTACATTTTTGAGAACAGGGAGAGTAATATGCAGCAAGTAAAACTGAATTGTATTCTAACTTTGTGTTTTTGGTGTTATCAGATTTACTCTAATGACACTGTCTCTATCATTGATGTTTTAGACTCATCTTAGGGATAGGACAGTGCCTTTAGAGTTCATTATGTAAATATGGTTTTCAGTACAACCCATGTACTGATTTACAGAAATTCAGAAATAGAAATAGTTCCCACATTTATTGCGTAGCATAATTTTATCAGTGATCTAGTGCAATTGATAAAAAAAAAGGTACTGGATTTCTATTTGCTACTTGATTGATATGGATCGGATGGTTTCCGCTTTTTAATTATTCTCTCTGAATTGGATGATTTCACTCTTTCTATGAACGTGTTTTCTTAATCTTTCTTTGGAGTACTCCTGAATTTTTCTCCCTTCAATAACGAAAATTATTACTTCATCAAAATAGTATTGCTGATTATTTTAGTGTTTCTTTGTACTCAGCTTGTAATGGTTGTTGATGCACGTGACCCACTTTTTTATCGGTGTCCTGATCTTGAGGTAAGTATTTCAATGCTTCGCATAGGTTGAAGTACATTTCAGTATTAGCACAATTATGATATATTTTCTATTTATATGTTTTGATATCCTTGTCATAATGTTACATGTAGCTGTGCATTCTTCTAGTGCACTATTGTTGAATTCTGATTTTCTTTTTTTAAAAAAAACTTTCTTGATGATTTTTTTTTAAGAAAGTAGGGAACGGTTTCGCACATATACTGATATACAAGATATTAGTGATGCCTCTCTTGTTTTACCTGTATCTATATCATACAAGTTGTGATAAAGATTATGCATTTATGGCGCCAAATTGCAGGCTTATGCACTAGAAGTCGACCAACACAAAAAAACAATGCTTCTTGTTAACAAAGCTGATCTTTTACCCATTTCTATCAGGTCAGTATGCCTGATAATATAGTTGCTGCTTCCTATCAGATTTCTTATTTTTGGATGTGCAATTTTATGGTTATTGCTTTATCTTCTGCAGAAAGAAATGGGCTGAATACTTCCACCAGCAAGGGATTCTTTTTCTTTTCTGGTCAGCTAAAGCTGCCTCTGCTGCTCTCAGTGCTTCAGAAGTACCAATGAGCTCTCAAGAGGCAGGTGATGCTGATACGAAAATATTAGGCAGGGAGGAGCTATTGGCCCGCTTACAGTCTGCAGCAGAGGAGATAGTTTTGACTAAGAATAGGTTAGCTTCTGATGCTGATGAGAACTTGGCAGAAGATGTTCAGTCTAGAAGTGTGATGGTGGGGTTTGTGGGGTATCCTAATGTTGGGAAAAGTTCAACGATTAATGCTTTGGTAGGGGAAAAA</genome_strand>
        <mrna_strand>GCTGCTCCTCCGCCGCCGCCGCCTACCTTCACCGCCGTCATCTACCACCGACTACGGTGACCAAAAAGTCACAATCTTTGAATACTCATATAGTTTCTGTAACTGGGTTTTCACTTTTTTTTTTTGTTAAGCTAATTGAATTTGAAGAGAAAAGGAGTAATGGGTAAAGGAGAGAAAAGTTCGTTAGGTAGGGCACTGGTGAAGCACCATAATCAGATGATTCAGCAATCGAAAGATAAGGGTCGAGTTTATAGGAATCATAATAAGAAGGTTCTGGAATCTGTAACTGAAGTTACTGATTTAGAAGCTGTAATAGAACAGACAGATGAAGCTCACCGTCTCTATTCTGACCTTAATCCTCCTGTTAATCTTCTCGTCAATCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTCTGGCTCTAGTTCTGGTGATATGCGACCTGAAGAAAGATTGAAGCAGCAGAAGAAAGAGGAGGCTTTGCATGCTAGTAGTCTTCGCGTTCCACGCAG...........................................................................GCCCCCATGGAATACTAAAATGTCCGTGGAAGAGCTTGATATTAATGAAAGACAAGCTTTTCTAGCTTGGCGACGCAATCTTGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGAAGAGAACGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTGTTGAGCGTAGTGATCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTAATGGTTGTTGATGCACGTGACCCACTTTTTTATCGGTGTCCTGATCTTGAG............................................................................................................................................................................................................................................................................................................................GCTTATGCACTAGAAGTCGACCAACACAAAAAAACAATGCTTCTTGTTAACAAAGCTGATCTTTTACCCATTTCTATCAG...........................................................................................AAAGAAATGGGCTGAATACTTCCACCAGCAAGGGATTCTTTTTCTTTTCTGGTCAGCTAAAGCTGCCTCTGCTGCTCTCAGTGCTTCAGAAGTACCAATGAGCTCTCAAGAGGCAGGTGATGCTGATACGAAAATATTAGGCAGGGAGGAGCTATTGGCCCGCTTACAGTCTGCAGCAGAGGAGATAGTTTTGACTAAGAATAGGTTAGCTTCTGATGCTGATGAGAACTTGGCAGAAGATGTTCAGTCTACAAGTGTGATGGTGGGGTTTGCGGGGTATCCTAATGTTGGGAAAAGTTCAACGATTAATGCTTTGGTAGGGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342218" ref_strand="+" ref_description="SGN-U342218        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ctagtctcgagtttttttttttttttttttcaacatttcgtagtgtcatggttatatcgaagccaagatcaattcgtggtaattttctcaggtgcaacatagaagaatcttagagtagaagaacaaaatgaaaaaatgcagaataagtgccctttttttccccattcggaacaattaccttactgttctgttttttcagctgtgagccgttcattttagctgaactatagagtgaaaggggtttgaatcgttgttacaatcatatgcatcattttcaatgaggccaagaggccaagtctagcactgctgacaacttgttttgccatgttaaatagttatgggatggtaaaggaaggatttgctatcgcaaaaatccatactaaaggaaggagtccctttttccatggcacagcctcagttgctttgatggaatgcttacatgaaaggcttaattgagtgttgcgggtagaattgctgtatgaggagtccacttaaaataaaaggaaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="19305" stop="63183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62371" g_stop="62883" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-U342218" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62371" e_stop="62883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACTGGATGAGGTTGGGACTTCTTTTTTGTCAACATTTCGTAGTGTCATGGTTATATCGAAGCCAAGATCAATTCGTGGTAATTTTCTCAGGTGCAACATAGAAGAATCTTAGAGTAGAAGAACAAAATGAAAAAATGCAGAATAAGTGCCCTTTTTTTCCCCATTCGGAACAATTACCTTACTGTTCTGTTTTTTCAGCTGTGAGCCGTTCATTTTAGCTGAACTATAGAGTGAAAGGGGTTTGAATCGTTGTTACAATCATATGCATCATTTTCAATGAGGCCAAGAGGCCAAGTCTAGCACTGCTGACAACTTGTTTTGCCATGTTAAATAGTTATGGGATGGTAAAGGAAGGATTTGCTATCGCAAAAATCCATACTAAAGGAAGGAGTCCCTTTTTCCATGGCACAGCCTCAGTTGCTTTGATGGAATGCTTACATGAAAGGCTTAATTGAGTGTTGCGGGTAGAATTGCTGTATGAGGAGTCCACTTAAAATAAAAGGAAACAAAA</genome_strand>
        <mrna_strand>CTAGT-CTCGAGTTTTTTTTTTTTTTTTTTTCAACATTTCGTAGTGTCATGGTTATATCGAAGCCAAGATCAATTCGTGGTAATTTTCTCAGGTGCAACATAGAAGAATCTTAGAGTAGAAGAACAAAATGAAAAAATGCAGAATAAGTGCCCTTTTTTTCCCCATTCGGAACAATTACCTTACTGTTCTGTTTTTTCAGCTGTGAGCCGTTCATTTTAGCTGAACTATAGAGTGAAAGGGGTTTGAATCGTTGTTACAATCATATGCATCATTTTCAATGAGGCCAAGAGGCCAAGTCTAGCACTGCTGACAACTTGTTTTGCCATGTTAAATAGTTATGGGATGGTAAAGGAAGGATTTGCTATCGCAAAAATCCATACTAAAGGAAGGAGTCCCTTTTTCCATGGCACAGCCTCAGTTGCTTTGATGGAATGCTTACATGAAAGGCTTAATTGAGTGTTGCGGGTAGAATTGCTGTATGAGGAGTCCACTTAAAATAAAAGGAAACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327749" ref_strand="+" ref_description="SGN-U327749        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | GTP-binding family protein, contains Pfam domain, PF01926: GTPase of unknown function | chr1:2646186-2649376 FORWARD | Aliases: T27G7.9, T27G7_9(evalue: 2e-53, score=206) genbank/nr: gi|15223206|ref|NP_172317.1| expressed protein [Arabidopsis thaliana] gi|6664306|gb|AAF22888.1| T27G7.9 [Arabidopsis thaliana](evalue: 1e-51, score=206)">
      <seq>atcgagtccctagaaaaactatcgaggatgtctacaacatatctctgccaaaaccaaagccatatgagccacagtctcgcccacctactgctgcagaacttttaagggcatactgtgcctctcgtggttatgttgcttcaagcggattgcccgatgaaacaagagcaacacgtcagatgttgaaggattatgttgatggaaagctgccacactttgaaatgcctccaggagaatcagacgatgaagctagtgaagaggaggatgaaattgttacagaggatgctgataatcctataatgtctggttctgatgaggatgatgacgacgatgaggatgaggatgaggatgatgaagacattaatgcacatctagatcatgttctgagtgatttaagtacgtttgatatggccaatggacttgcttctaaccagacagctcgtaaaaagaagcccataactgctccccataaacaacataaaaagacacaaagaaagaaagaccggtcatggagagtccagaacggtgaaggtgatgggatgccagtagtaagagtcttcaggaaagcagcaaacactggacctgtgaacatccggtaggtatcaatgggaagttacactggcttcttggctcccaactctgcttaccttgtcaactgtcgttatttcgcctatatattactgcaagcgttatatattacacgcatatctttacaacgatggtgcggtatatatgcttatttttcaagtagcactctcactaagggagttgaagagtgaatcttagtttgtttaaaaccatctggattaatgttgttctgatcttctgttgccaatgattcttctttgaaacagaagatgtagtagaaaatttgtgtatgaaattgcctttaagggaaagtgttatattttcaggtgagatttttcagcataaatatgaattaattgtttttgatattttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="68055" stop="69620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68355" g_stop="69320" g_length="966"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="960" r_length="960" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-U327749" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>966</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68355" e_stop="69320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGAGTCCCTAGAAAAACTATCGAGGATGTCTACAACATATCTCTGCCAAAACCAAAGCCATATGAGCCACAGTCTCGCCCACCTACTGCTGCAGAACTTTTAAGGGCATACTGTGCCTCTCGTGGTTATGTTGCTTCAAGCGGATTGCCCGATGAAACAAGAGCAACACGTCAGATGTTGAAGGATTATGTTGATGGAAAGCTGCCACACTTTGAAATGCCTCCAGGAGAATCAGACGATGAAGCTAGTGAAGAGGAGGATGAAATTGTTACAGAGGATGCTGATAATCCTATAATGTCTGGTTCTGATGAGGATGATGACGACGATGAGGATGAGGATGAGGATGAGGATGATGAAGACATTAATGCACATCTAGATCATGTTCTGAGTGATTTAAGTACGTTTGATATGGCCAATGGACTTGCTTCTAACCAGACAGCTCGTAAAAAGAAGCCCATAACTGCTCCCCATAAACAACATAAAAAGACACAAAGAAAGAAAGACCGGTCATGGAGAGTCCAGAACGGTGAAGGTGATGGGATGCCAGTAGTAAGAGTCTTCAGGAAAGCAGCAAACACTGGACCTGTGAACATCCGGTAGGTATCAATGGGAAGTTACACTGGCTTCTTGGCTCCCAACTCTGCTTACCTTGTCAACTGTCGTTATTTCGCCTATATATTACTGCAAGCGTTATATATTACACGCATATCTTTACAACGATGGTGCGGTATATATGCTTATTTTTCAAGTAGCACTCTCACTAAGGGAGTTGAAGAGTGAATCTTAGTTTGTTTAAAACCATCTGGATTAATGTTGTTCTGATCTTCTGTTGCCAATGATTCTTCTTTGAACAAGAAGATGTAGTAGAAAATTTGTGTATGAAATTGCCTTTAATGGGAAGTGTTATATTTTCAGGTGAGATTTTTCAGCATAAATATGAATTAATTGTTTTTGATATTTTTTT</genome_strand>
        <mrna_strand>ATCGAGTCCCTAGAAAAACTATCGAGGATGTCTACAACATATCTCTGCCAAAACCAAAGCCATATGAGCCACAGTCTCGCCCACCTACTGCTGCAGAACTTTTAAGGGCATACTGTGCCTCTCGTGGTTATGTTGCTTCAAGCGGATTGCCCGATGAAACAAGAGCAACACGTCAGATGTTGAAGGATTATGTTGATGGAAAGCTGCCACACTTTGAAATGCCTCCAGGAGAATCAGACGATGAAGCTAGTGAAGAGGAGGATGAAATTGTTACAGAGGATGCTGATAATCCTATAATGTCTGGTTCTGATGAGGATGATGACGAC------GATGAGGATGAGGATGAGGATGATGAAGACATTAATGCACATCTAGATCATGTTCTGAGTGATTTAAGTACGTTTGATATGGCCAATGGACTTGCTTCTAACCAGACAGCTCGTAAAAAGAAGCCCATAACTGCTCCCCATAAACAACATAAAAAGACACAAAGAAAGAAAGACCGGTCATGGAGAGTCCAGAACGGTGAAGGTGATGGGATGCCAGTAGTAAGAGTCTTCAGGAAAGCAGCAAACACTGGACCTGTGAACATCCGGTAGGTATCAATGGGAAGTTACACTGGCTTCTTGGCTCCCAACTCTGCTTACCTTGTCAACTGTCGTTATTTCGCCTATATATTACTGCAAGCGTTATATATTACACGCATATCTTTACAACGATGGTGCGGTATATATGCTTATTTTTCAAGTAGCACTCTCACTAAGGGAGTTGAAGAGTGAATCTTAGTTTGTTTAAAACCATCTGGATTAATGTTGTTCTGATCTTCTGTTGCCAATGATTCTTCTTTGAAACAGAAGATGTAGTAGAAAATTTGTGTATGAAATTGCCTTTAAGGGAAAGTGTTATATTTTCAGGTGAGATTTTTCAGCATAAATATGAATTAATTGTTTTTGATATTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317836" ref_strand="+" ref_description="SGN-U317836        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT2G27210.1 | Symbol: None | kelch repeat-containing serine/threonine phosphoesterase family protein, similar to SP:P48482 Serine/threonine protein phosphatase PP1 isozyme 2 (EC 3.1.3.16) {Arabidopsis thaliana}; contains Pfam profile PF00149: Calcineurin-like phosphoesterase | chr2:11636997-11643786 FORWARD | Aliases: T22O13.2, T22O13_2 (evalue: 3e-38, score=132) genbank/nr: DNA(evalue: 2e-37, score=135)">
      <seq>tattatagtattgatatggatgtggattcaactatggtatcggagtccgatcacgatccgactgttcagaatgatagttcgacgtcggaacaacagcttaatgatgagtcttcaacttcgttgcagcagcaaagttcacaaactcagcaacagcagcagcaaagtagtagtagtagtagtgttcctgctgttgcgggaccaaggtgtgctccgacgtattcggtggtgcacgaagtgatagagaagaaggaagatggtccagggccaaggtgtgggcatacgttaacggctgtaccagctgttggtgaagaaggttctcctaattatattggtccaaggcttattctttttggtaggtgctactgctcttgagggaaattctgctgcttctggaaccccgtcttctgctggaagtgctggaattcgcttagcaggggctactgctgatgtgcactgttatgatgttttcacgaatgcgtgatggatggctttgaaagatttgctcaggggcgtttgattactctttttttcagccaccaattactgcggtactgctaacaatgctggtgccattttagcactgggtagagatcttgttgtggttccaaaacttatccacccaattccgccagtttcatcgcctgaaaattcacctgaacggcatataggagacacttggatgcaggacttaaatgctaacagaccccctacaccaaccagaggccgtccccaagtttgcgaacgatcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="71085" stop="81027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71385" g_stop="71808" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71809" i_stop="72424" i_length="616">
            <donor d_prob="0.345" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72425" g_stop="72470" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="471" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72471" i_stop="80281" i_length="7811">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80282" g_stop="80357" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="548" r_length="77" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80358" i_stop="80446" i_length="89">
            <donor d_prob="0.844" d_score="0.92"/>
            <acceptor a_prob="0.904" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80447" g_stop="80583" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="685" r_length="137" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80584" i_stop="80664" i_length="81">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80665" g_stop="80727" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="749" r_length="64" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-U317836" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71385" e_stop="71808"/>
          <exon e_start="72425" e_stop="72470"/>
          <exon e_start="80282" e_stop="80357"/>
          <exon e_start="80447" e_stop="80583"/>
          <exon e_start="80665" e_stop="80727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAGAGTATTGATATGGATGTGGATTCAACTATGGTATCGGAGTCCGATCACGATCCGACTGTTCAGAATGATAGTTCGACGTCGGAACAACAGCTTAATGATGAGTCTTCAACTTCGTTGCAGCAGCAAAGTTCACAAACTCAGCAACAGCAGCAGCAAAGTAGTAGTAGTAGTAGTGTTCCTGCTGTTGCGGGACCAAGGTGTGCTCCGACGTATTCGGTGGTGCACGAAGTGATAGAGAAGAAGGAAGATGGTCCAGGGCCAAGGTGTGGGCATACGTTAACGGCTGTACCAGCTGTTGGTGAAGAAGGTTCTCCTAATTATATTGGTCCAAGGCTTATTCTTTTTGGT-GGTGCTACTGCTCTTGAGGGAAATTCTGCTGCTTCTGGAACCCCGTCATCTGCTGGAAGTGCTGGAATTCGTAGGTTACCCGACTTAATTGATTAGCTGAACTGGACCTTTTCTTTTGTAATTTCCTTCTACTCTATTATGGGGAGGGGGAGCTTGGTTTAACCGGTAAAGTTGTTGTCATGTGATCAGAGTTCACGGGTTCGAGTTGTGAAAACAACCTCTTGCATAAATGCGAGATAGACTGTGTACAATAGACCCTTGTGGTTCAGCCCTTTCCTGGTGAAGTTGCTGCCAAGCACGAGCTGTAAAAACAACCTCTTGCAGAAATGCAGGGTAAGGTTGCGTACAATGGACTCTTGTAGCTCGGCCCTTTCCTGGACCCCACACATAGATGGAACTTAGTGCGTCGGGGTGGTTTGGGGTAACTTTTGAGCGCCTCCAGTATTTTACCTGTACCTGCATCTTTTTACCTTTGCAGGTATTAGGTAGCTTTGCCTTCAGCGCCTAGTTTGTTGGGAGAAATGACATAGATTTTATGACAGACTTGCTTGGATTTGAACCGTGGTTTCCTATGGTCTTCATTCTAGCTTCATCCCTACTAGACACACCCTCGGGTTGTGGTAGTAAAACTGAATCTGGGTTTCAAATGTAAAATGATTTATTTGAGGTTTTGTATCTAATTGCAGGCTTAGCAGGGGCTACTGCTGATGTGCACTGTTATGATGTTTTCACGAATAAATGGTCTAGGTAAGTCTGAATTGTATCAGTGACAAGCTACATTTTGGTGCTTAGTTAGAAGGTTTGAATATGTGAATGAACTTCACAGGATCACTCCCATTGGGGAGCCACCCACACCAAGGGCTGCACATGTTGCTACAGCTGTGGGAACTATGGTTGTTATTCAGGTTTGTATTGGCTGATAGCTTTGTTGTTTGCCTCGCGTATGATAATCTCATTCAGCCACTTAAGATGTTCTATTTACCATCCATCTCAGGGTGGAATCGGTCCAGCTGGTTTGTCAGCTGAGGATCTTCACGTTCTGGACCTTACTCAACAACGGCCAAGATGGCACAGGTTAGCACCTTTCGAGTAATGTCTATAGTTATCATAATGAATGTTGCCTGTGCGTGAATCCATGACGAACTTGTGTTAAATGATTTTGATCTTATCAGGGTTGTGGTGCAAGGACCTGGTCCAGGTCCGCGTTATGGACACGTCATGGCTTTGGTAGGGCAAAGATATCTCATGGCAATTGGCGGAAATGATGGTTAGTCTGATATCTGAGTCAGATATATTTATTTCAGCAATGACATGGTTTAGAAAAATATTAATCATTCTATTGTATTCAGGAAAAAGGCCTCTAGCGGATGTTTGGGCTTTGGACACGGCTGCCAAGCCATATGAATGGCGGAAGTTGGAACCGGAGGGTGAAGGTCCACCTCCTTGCATGTAAAGTTCATATTCTCTCACTTGAAGACGTGTACTTTATTTTCTTTGTTACCCAATAAATTATCGTTTCTCTTGATTTGTATTTATTTGCTTATTCAGAATTCTATACTTTAAAGGTAGCAAATCTCAAGAATTACTTGTACATATCTGTAAGTATTACATGCTGTTACTAGTGTCAATGATGCATTGTCTGTTTAGTTAGCTTGCAAATTATGTGTATGTGATCTGATTAGGGAGTGTGTCTGATCTTTTATATGAAAAGTTGTTTATCCTGGAGCTGTATGTGTAGAACAATGTTTGTTCATGCTTGTTGGAGATCAATGCCATCAGATTATTTTGAATGTGATACTAATTTGGCCCAACCAATTACGAAATTTAGGAAGTCCTAATACGCCCTGCTTCTGTTTTAGGTATGCAACCGCAAGTGCACGTTCAGATGGTCTTCTTCTGCTCTGTGGAGGGAGGGATGCCAATAGTGTGGTGAGTCAAGCATATACTTTTTATACTGATTTATTTGTTCTATCATATTGCTATGCCTTGCAGTTAGATCACAATGTCATCATGGTGCTCTTCTCTTTCGTAACTGGTCAATTTTTCTTACCTTTTTTGTTGCCTTGGTTATTCATAGCCTCTGGCAAGTGCTTATGGACTTGCCAAACATAGAGATGGACGTTGGGAATGGGCCATTGCCCCTGGTGTGTCACCCTCTCCCAGATATCAACATGCTGCAGTAAGTGTGTTTTTTCATTTACATTATATTTCTCCTTTCTGGCAGGGATCATAAGGGAGTTATCAGTTGTTTATGGTAACAGGTTTTTGTTAATGCTCGGCTGCATGTATCTGGAGGGGCACTTGGTGGTGGACGCATGGTGGAGGACTCATCCAGTGTTGCGGGTATTTCCTTTATGCTCTCTGTATTGATTGCTTGTTTAGATTAACACTTTCTGATATAGCTTTAAAAAAAGAACACTTCCTCATTTGGTTATATCTTTTACTTTTCCCTTTGGTCGGGTGTGATGTCATTCTCACAGCCATGTTTCTTCTTTCTTCCTTCTCTTCTTTTGGCAGTTCTTGATACAGCTGCAGGAGTGTGGTGTGACACAAAATCTGTTGTGACTAGTCCTAGGACTGGCAGATTCAGTGCAGATGCAGCTGGTGGAGATGCTGCTGTTGAATTGACCAGACGCTGTAGGCATGCAGCTGCTGCTGTTGGGGACTTGATATTTATCTATGGTGGTCTACGTGGCGGTGAGGCTATATATATGCATGCTCAATAACTGCTTCTCTTTGTTGCAAAGATTGGAAAAAGTTGATGCATACCTTTCACTTTCTTTTCTAATAATCATTTCTCCTCCTATGCCCTCCTCGCAATAGCCCACTTTAAAATTCAACCAAATGTAGGATAAAGCTTCAAATAGAATCTATCCTTACTTTGCTTATAAATCCCAACAAACTAACTTCTCCGACGATACAGCCTGACTAAAATTAAAAAATAGACCCCAACATCTGATTTGTACAAATCAGATCCTAAGACAGAAGACTATAAATTTAGGTCAAAACCCAAACAAGCTTGCGAAGTGCTAAACTATGTTAAACATCTACATATCTGCACCACTTAGTGGTTTGATATAAACTTGAAACTTAACACTAATGTGTGAATTCTAAAGATTATTTTTATTTATTAATGAATATTTTCCCTCCCCGGGGGCATAGTGTGGCATCTGGATCTTTTCATCGGGCGCCATTTCTTTTAGATCAAAAGGTGGTCTGACTCTATTGGATCAAATCATAAGCTAAGCCGTGCTAGGAGCTAGGTGGCTCAAGAAAGAACAAAAAAGTGAAATTTAACCTTTTGAATTCACAAGCACCTCATAATTCTCTGAGAAATGATTACTCGGTATGCAAGCGGATAATGTCTCTCTGGTGGAAAATAGTGAAATATCTGTCTTGTCCATGATGAGATACATGAAAACAATTAGTTGTGCCTTTCTGTCAAATACCTGACTTTGAAACTTAAGGCATTGATATTCAAGAGGAGGTATTTGTGGGTATGAAGGCAATATATTACTTAGCCGATCTCATATTAAATTTATATGTAGGTGTTGCAGTTATGTTCACAAATGAAGTGTTTGTTGACTATCCGAACTGCTGCAATGAGTGCTTCTCTAATCTCTCCTCACATGAGAACCTCTGGAGCAGTTATTTGGATCACTTGCTGGTTTCTGCTGCGAGTGTACTAAGCTATTAAAAGTTGCTGATGTTTGGAACCCTTCTATGCAAGGCAATTATTTACTTGTCACCAATTTCGCAGGTGTACTGCTGGATGACTTGCTTGTTGCTGAAGACTTGGCTGCCGCAGAAACAACAAGTGCAGCTTCACATGCCGCAGCTGCTGCCGCCAATCTACAAGATGGCAGGCTTGCTGGGAGGTATGGTTTTGGTGATGAAAGAACGAAGCAAACAGTTTCCGAGGCAGTTAATGATGGTTCTGTTGTACTGGGAAATGCTGTTGCTCCCCCTGTAAATGGCGATATGTATACTGATATAAGTACTAAGAATGTCATGCTTCAAGGATCTCGGTGAGTCTACAATTGCTTAATAATGGCAGTGCCTATTGTGCCAGCTAATGGCAGTGCCTATTGTGCCTGCTGTCATCCTTCTTTAAATTCTGTTGTTGCCTTGGTTCTCAGTTTCACCATCTTGGGTTTGTTTTGTAGGAGACTCAGCAAAGGTGTCGAATATTTAGTGGAGGCCTCTGCAGCAGAAGCTGAGGCTATTACTGCTGCACTAGCAGCTGCCAAAGCTCGACAGCAAGGTAATGGAGAAGTCGAACTTCCTGATAGGGATGGTGGAGCAGAGGCTACACCAAGTGGAAAAGCAGCATCTTCTTCAATCAGTTTAGATTCTTCCGGATCGAATAATTCTGCCCCAACTGGTGTCCGTCTTCATCATCGTGCCGTTAGTATTCAGATCCTTTATGCTATGTCGTGCTATCTGGTTAAGTTTGGAAAATAATAGACTGATGATGTGCCTTTAAACATTTATAGATAGTTGTAGCTGCAGAGACTGGTGGTGCTCTTGGTGGTATGGTACGACAGCTTTCTATCGATCAATTTGAAAATGAAGGCCGGCGAGTCAGTTATGGAACCCCAGAAAATGTCACGGCAGCACGAAAACTTTTGGATCGACAAATGTCCATCAACAGTGTTCCGAAAAAGGTACAATAAGTTATTGTGTGCTTCAACTAGTTAGGAAACCCTTTGATGCTGTGGTCCCACCTAAAATTCCTCCGTTTAGGAAACTTATAGGTCCCTAAGACAATGAATGTCCACATGAAGAACAAATGGAAGACAAGTGAAGAAAAGAAATTGAGTTTTAAATTTTTCCTGATGTATATATTGTGACCTTGGGTGGGGGGAAGAGAGAGAGTGGTGGGTTGGGAGAGTACAGGAGAAAGAGAAGAAGATTCCCGAATGGGAGAAAATACTCCGGGCAGTTGGCCCATTGCTATTCACAGTACTCAACAGATAAACATATATCCGGTTCGCAGAATAATTGCTATAAGCTTAGGCGGTCTTGTTCCTATTAGAACACATAGCTTTTTGTGTTTGTTATAATCTTTTGCTCTTTCTTTCTGTCTCAGTTGATCACCCATCTTTTGAAGCCTCGGGGTTGGAAGCCGCCTGCGCGACGAGAGTTTTTTTTGGACTGCAATGAGATCGCCGATCTTTGTGATAGTGCCGAAAGAATATTTGCTAGTGAACCTACTGTATTACAGCTAAGGGCTCCTATTAAGATATTTGGTGACTTACATGGGCAATTTGGGGATCTCATGCGTCTTTTTGACGAGTATGGTTCCCCGTCAACTGCTGGGGATATTGCGTAAGTGCCTTGACAATCTTGCATTTCAGTATATTTTTTAGTTGAAGTGTTCGTTCGAATCTATGTTGCCTAGTCCGTGTCGTGATTGAAATTACTGAAATTATAGCAGTTTCAACTAGGGATAGGCATTCATTTGTTCAAAACTTCGGTTCGGTTCTTTGATTTTAGTTCTTCACTGGTGCATACCGAACCAAACGATTTTGTTTTTTTTCTATTTCGGTATGTGATCTAAGTTTTCTAACTTTGATGCTATTATCGGGATGCTCCATTTTTGAGTTTTTCACGTGAAGCGAGGCCAGTCTTGCCAAGCATTGTAAATAAAACATTGACATTAGAGAGCAAGGAAATAGCTAAGGATTTCCTTACATGTACCACTTCCAAGCTGTCCAACTGGCTATAATGAAGAGTTGCTTTTAAAAAATTCCTTTGGTCCCAACTCCTACAATTATTAGACATTGTCCTCTTTGAATGTACCTGCATGTATCTTATAAATCTTTGACAATTTTATTCGTATTATACCATTTTGAAGTGCAGTTTTGATTTCATGGATTCTTTAGTACAAAAAACCTTGCATATTCTGAATTTGCAAATAAGATTAACACTTCTATTTTAATTCACATCTGTCTGTTAGGTGAGGGATCAAACCTTTTATTGCCCTCCTCCATTTACGCAGGTCTTCCATTTCCCCGATTTTGTTTGAATTCCACTTCTTTTTTCTGGGAAAAAGTGAAGGAGAAGGAACTTCTTGAGTGAATCCATCTTTTTCCTGTTTAGACCCCTTCATCTCAAACAATTCAATTTCTATTTCTGACCCTTTTTCACTGTTCAGTATGTTATTCTTTGGGTTTTTTTTTTAGAAGGTAACAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCCACAAACAAATTACTACATCTCTCTTCCTCACTTTTCAAGGTGGTGTATCTTATGCTTCTTTTAGTGTTACTTTAACTGTAGGTTCTCTTTCATAATTTTTCACTCGAGGCATCTACTAAGAGAAATATTCTTAGGGCCTGTTTGGACATGCATTATGAAATCATGATTTGTAATCAGATTGATTTGAAGTTTTATTTCGTCATGCATTTTGAATTTTTTAAGTTGTATTTTTCTCATAAATGTGAATACCCTACTAGTTGTGAAAAGTGAAAACTATCAAAATTTCTCTAATTCTTACACAATCTTACCAAAATAGCAAATCATAATTCATAAACAAGTATTGAGATATCCTACGGCACTGCATTGATAAATCGCATATGTCTATGTTCCTTTTATGAATAAATGTTTGTGATTACAAACTTTCAAAATACGCTTAATTTTATTAAGATCCACTAGTAAACAATAGTTGTAACAAGTAATTCTTTTATATAATGTTTTCACAAGGTTCCTACAATCTCCACACCGAATGTTTTCTTTACATAATATGAACTTATGGGTCAAACATTTTTGAAAAATTGAAATCACTATTTGAACTCTCCAGGAATTGAAAAGCTCTTTTGGAGGATCCTGATTAAAATAGTCTTTGAAGAAAAGATTAAGACAGGACTTTGCAGTTAATTTGTTTTGTTGGAATAATATAATATATAGTGATTGGATTGTGTGTAGCCTAATAGTTTTGTTCTGTCTAAATTATCAACTTCTCCTCCCCCCCCCCCCCCCCCCCCAATTTTTGTAGTTGATAGCTAAAATGATCTTTTTCCAATGTCAATATGCACTTCTAATGCTGTTCCTTTGGTACTAATTCTTTTTTCAGTAAATGCTAATTTGCTAATCTTGTGTAATCGATTCTTCAGGTATATTGATTACCTCTTCTTGGGAGATTATGTTGATAGGGGCCAGCACAGCTTGGAGACCATTACCCTTCTCCTTGCATTAAAGGTATCTATTTGCTATATACTTGTGATACATTTCCACTTTCGGAATTGCTCTTTACTGATTTTAATGGCACATAACTGTTTGTTAGGTCGAGTATCCTTACAATATACATTTAATACGTGGGAACCATGAAGCTTCAGATATAAATGCGCTCTTTGGCTTTCGAATTGAGTGCATTGAACGCCTGGTATGCTACTATCATTTACCAATTGGAAGTCCTCCTTCCCTCTTCTAGTTGGTTACTGATCTTCTTTATGGAGCAGGGTGAGAGAGATGGAATCTGGGCATGGCATCGGATTAATAGATTGTTTAACTGGCTTCCTCTGGCTGCCCTGATCGAGAAAAAAATCATCTGTATGCATGGTGGGATTGGAAGGTCCATTAATCACGTTGAGCAAATAGAGAGTATCCAGCGTCCTATCACTATGGAAGCTGGCTCAATCGTTCTGATGGATTTGTTGTGGTTAGCCCATGTCTTCTCTTTTTCCTTCTTCCATTTTGACATTGTCCTATTTTCTAAAATTGATTTATGCATCTAGGTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAGGCCCTGGCTTGGTAACTTTTGGGGTAACTTATTTTACAACTTCTTTGAGACTACTGATTCTCTTAATTCTTCATTTCACAACTCTTAGATTTTTTTTTTTAATGTTAAAAGCTGCAATATTCTTCTCCATTTGGGAGAACTGAAGTTAGTTACAGTGACTCATAAAGGAATGGAATTTGCCCCAAAAAAATCAGTTGCCTCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCAGTATGTCATTTCTTACGTATTTTTTCTTAGTTCCGTTGGGCTATTGTAGCTCCTCATCTGCAATTGTTCTTGTCTTCATTTATTTCTGTGGTTGGACAATCTTAATTTGTCTGTCCAGGCTCTTTTCTTTAAGAAGTACTAAATTCATAATCCTTGAAACAATATTATCTTAAAAGTTCTGATGATTGGGATATCATTTTTCTAGCTTTTGGTGTTGGATCTTTGGTCCATGACAATCACTGGTCATTCCTCTTTTTTGTTGCCAGATTTGTTGATTGCATGTAATTTCTATAGCATCATTCCTCTATTGCACTTATGTAAAAACTTTCCTTTACATGCAGCCCGATCGTGTGATGGAGTTTTGCAACAACAATGATCTTCAACTAATAGTCCGAGCCCACGAATGCGTGATGGATGGCTTTGAAAGATTTGCTCAGGGGCATTTGATTACGC-TTTTTTCAGCCACCAATTACTGCGGTATGTCTGTTCTTACTGATTTTGGATGCTCAGAGGATTATTTTCGACGTTTTCATCTATATAAGAGGACTCCTCTTCTACTGCTGCAGGTACTGCTAACAATGCTGGTGCCATTTTAGTACTGGGTAGAGATCTTGTTGTGGTTCCAAAACTTATCCACCCAATTCCGCCAGTTTCATCGCCTGAAAATTCACCTGAACGGCATATAGAAGACACTTGGATGCAGGTTGTCTTTTTTCCCCCATATATCTTTTTGTGCTTTGATCTAAGTTGTGTGGGTCTTGTTAACACACACTATCTGTTATAGGAGTTAAATGCTAACAGACCCCCTACACCAACCAGAGGCCGTCCCCAAG-TTGCGAACGATCGA</genome_strand>
        <mrna_strand>TATTATAGTATTGATATGGATGTGGATTCAACTATGGTATCGGAGTCCGATCACGATCCGACTGTTCAGAATGATAGTTCGACGTCGGAACAACAGCTTAATGATGAGTCTTCAACTTCGTTGCAGCAGCAAAGTTCACAAACTCAGCAACAGCAGCAGCAAAGTAGTAGTAGTAGTAGTGTTCCTGCTGTTGCGGGACCAAGGTGTGCTCCGACGTATTCGGTGGTGCACGAAGTGATAGAGAAGAAGGAAGATGGTCCAGGGCCAAGGTGTGGGCATACGTTAACGGCTGTACCAGCTGTTGGTGAAGAAGGTTCTCCTAATTATATTGGTCCAAGGCTTATTCTTTTTGGTAGGTGCTACTGCTCTTGAGGGAAATTCTGCTGCTTCTGGAACCCCGTCTTCTGCTGGAAGTGCTGGAATTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTAGCAGGGGCTACTGCTGATGTGCACTGTTATGATGTTTTCAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317835" ref_strand="+" ref_description="SGN-U317835        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: AT2G27210.1 | Symbol: None | kelch repeat-containing serine/threonine phosphoesterase family protein, similar to SP:P48482 Serine/threonine protein phosphatase PP1 isozyme 2 (EC 3.1.3.16) {Arabidopsis thaliana}; contains Pfam profile PF00149: Calcineurin-like phosphoesterase | chr2:11636997-11643786 FORWARD | Aliases: T22O13.2, T22O13_2 (evalue: 2e-167, score=585) genbank/nr: DNA(evalue: 1e-167, score=591)">
      <seq>ttacatgggcaatttggggatctcatgcgtctttttgacgagtatggttccccgtcaactgctggggatattgcgtatattgattacctcttcttgggagattatgttgataggggccagcacagcttggagaccattacccttctccttgcattaaaggtcgagtatccttacaatatacatttaatacgtgggaaccatgaagcttcagatataaatgcgctctttggctttcgaattgagtgcattgaacgcctgggtgagagagatggaatctgggcatggcatcggattaatagattgtttaactggcttcctctggctgccctgatcgagaaaaaaatcatctgtatgcatggtgggattggaaggtccattaatcacgttgagcaaatagagagtatccagcgtcctatcactatggaagctggctcaatcgttctgatggatttgttgtggtctgacccaacagaaaatgatagtgttgaaggactaagaccaaatgcaagaggccctggcttggtaacttttgggcccgatcgtgtgatggagttttgcaacaacaatgatcttcaactaatagtccgagcccacgaatgcgtgatggatggctttgaaagatttgctcaggggcatttgattacgcttttttcagccaccaattactgcggtactgctaacaatgctggtgccattttagtactgggtagagatcttgttgtggttccaaaacttatccacccaattccgccagtttcatcgcctgaaaattcacctgaacggcatatagaagacacttggatgcaggagttaaatgctaacagaccccctacaccaaccagaggccgtccccaagttgcgaacgatcgaggttcttttgcttggacttagattcttttcctatactttgagcttcatgctcttaacatctgggatttccagtgatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="76696" stop="81106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76996" g_stop="77069" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77070" i_stop="78887" i_length="1818">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78888" g_stop="78972" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="159" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78973" i_stop="79057" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79058" g_stop="79156" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="258" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79157" i_stop="79232" i_length="76">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79233" g_stop="79432" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="458" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79433" i_stop="79508" i_length="76">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79509" g_stop="79584" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="534" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79585" i_stop="80221" i_length="637">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80222" g_stop="80357" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="670" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="80358" i_stop="80446" i_length="89">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="80447" g_stop="80583" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="807" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="80584" i_stop="80664" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="80665" g_stop="80806" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="808" r_stop="949" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-U317835" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>949</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76996" e_stop="77069"/>
          <exon e_start="78888" e_stop="78972"/>
          <exon e_start="79058" e_stop="79156"/>
          <exon e_start="79233" e_stop="79432"/>
          <exon e_start="79509" e_stop="79584"/>
          <exon e_start="80222" e_stop="80357"/>
          <exon e_start="80447" e_stop="80583"/>
          <exon e_start="80665" e_stop="80806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATGGGCAATTTGGGGATCTCATGCGTCTTTTTGACGAGTATGGTTCCCCGTCAACTGCTGGGGATATTGCGTAAGTGCCTTGACAATCTTGCATTTCAGTATATTTTTTAGTTGAAGTGTTCGTTCGAATCTATGTTGCCTAGTCCGTGTCGTGATTGAAATTACTGAAATTATAGCAGTTTCAACTAGGGATAGGCATTCATTTGTTCAAAACTTCGGTTCGGTTCTTTGATTTTAGTTCTTCACTGGTGCATACCGAACCAAACGATTTTGTTTTTTTTCTATTTCGGTATGTGATCTAAGTTTTCTAACTTTGATGCTATTATCGGGATGCTCCATTTTTGAGTTTTTCACGTGAAGCGAGGCCAGTCTTGCCAAGCATTGTAAATAAAACATTGACATTAGAGAGCAAGGAAATAGCTAAGGATTTCCTTACATGTACCACTTCCAAGCTGTCCAACTGGCTATAATGAAGAGTTGCTTTTAAAAAATTCCTTTGGTCCCAACTCCTACAATTATTAGACATTGTCCTCTTTGAATGTACCTGCATGTATCTTATAAATCTTTGACAATTTTATTCGTATTATACCATTTTGAAGTGCAGTTTTGATTTCATGGATTCTTTAGTACAAAAAACCTTGCATATTCTGAATTTGCAAATAAGATTAACACTTCTATTTTAATTCACATCTGTCTGTTAGGTGAGGGATCAAACCTTTTATTGCCCTCCTCCATTTACGCAGGTCTTCCATTTCCCCGATTTTGTTTGAATTCCACTTCTTTTTTCTGGGAAAAAGTGAAGGAGAAGGAACTTCTTGAGTGAATCCATCTTTTTCCTGTTTAGACCCCTTCATCTCAAACAATTCAATTTCTATTTCTGACCCTTTTTCACTGTTCAGTATGTTATTCTTTGGGTTTTTTTTTTAGAAGGTAACAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCCACAAACAAATTACTACATCTCTCTTCCTCACTTTTCAAGGTGGTGTATCTTATGCTTCTTTTAGTGTTACTTTAACTGTAGGTTCTCTTTCATAATTTTTCACTCGAGGCATCTACTAAGAGAAATATTCTTAGGGCCTGTTTGGACATGCATTATGAAATCATGATTTGTAATCAGATTGATTTGAAGTTTTATTTCGTCATGCATTTTGAATTTTTTAAGTTGTATTTTTCTCATAAATGTGAATACCCTACTAGTTGTGAAAAGTGAAAACTATCAAAATTTCTCTAATTCTTACACAATCTTACCAAAATAGCAAATCATAATTCATAAACAAGTATTGAGATATCCTACGGCACTGCATTGATAAATCGCATATGTCTATGTTCCTTTTATGAATAAATGTTTGTGATTACAAACTTTCAAAATACGCTTAATTTTATTAAGATCCACTAGTAAACAATAGTTGTAACAAGTAATTCTTTTATATAATGTTTTCACAAGGTTCCTACAATCTCCACACCGAATGTTTTCTTTACATAATATGAACTTATGGGTCAAACATTTTTGAAAAATTGAAATCACTATTTGAACTCTCCAGGAATTGAAAAGCTCTTTTGGAGGATCCTGATTAAAATAGTCTTTGAAGAAAAGATTAAGACAGGACTTTGCAGTTAATTTGTTTTGTTGGAATAATATAATATATAGTGATTGGATTGTGTGTAGCCTAATAGTTTTGTTCTGTCTAAATTATCAACTTCTCCTCCCCCCCCCCCCCCCCCCCCAATTTTTGTAGTTGATAGCTAAAATGATCTTTTTCCAATGTCAATATGCACTTCTAATGCTGTTCCTTTGGTACTAATTCTTTTTTCAGTAAATGCTAATTTGCTAATCTTGTGTAATCGATTCTTCAGGTATATTGATTACCTCTTCTTGGGAGATTATGTTGATAGGGGCCAGCACAGCTTGGAGACCATTACCCTTCTCCTTGCATTAAAGGTATCTATTTGCTATATACTTGTGATACATTTCCACTTTCGGAATTGCTCTTTACTGATTTTAATGGCACATAACTGTTTGTTAGGTCGAGTATCCTTACAATATACATTTAATACGTGGGAACCATGAAGCTTCAGATATAAATGCGCTCTTTGGCTTTCGAATTGAGTGCATTGAACGCCTGGTATGCTACTATCATTTACCAATTGGAAGTCCTCCTTCCCTCTTCTAGTTGGTTACTGATCTTCTTTATGGAGCAGGGTGAGAGAGATGGAATCTGGGCATGGCATCGGATTAATAGATTGTTTAACTGGCTTCCTCTGGCTGCCCTGATCGAGAAAAAAATCATCTGTATGCATGGTGGGATTGGAAGGTCCATTAATCACGTTGAGCAAATAGAGAGTATCCAGCGTCCTATCACTATGGAAGCTGGCTCAATCGTTCTGATGGATTTGTTGTGGTTAGCCCATGTCTTCTCTTTTTCCTTCTTCCATTTTGACATTGTCCTATTTTCTAAAATTGATTTATGCATCTAGGTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAGGCCCTGGCTTGGTAACTTTTGGGGTAACTTATTTTACAACTTCTTTGAGACTACTGATTCTCTTAATTCTTCATTTCACAACTCTTAGATTTTTTTTTTTAATGTTAAAAGCTGCAATATTCTTCTCCATTTGGGAGAACTGAAGTTAGTTACAGTGACTCATAAAGGAATGGAATTTGCCCCAAAAAAATCAGTTGCCTCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCAGTATGTCATTTCTTACGTATTTTTTCTTAGTTCCGTTGGGCTATTGTAGCTCCTCATCTGCAATTGTTCTTGTCTTCATTTATTTCTGTGGTTGGACAATCTTAATTTGTCTGTCCAGGCTCTTTTCTTTAAGAAGTACTAAATTCATAATCCTTGAAACAATATTATCTTAAAAGTTCTGATGATTGGGATATCATTTTTCTAGCTTTTGGTGTTGGATCTTTGGTCCATGACAATCACTGGTCATTCCTCTTTTTTGTTGCCAGATTTGTTGATTGCATGTAATTTCTATAGCATCATTCCTCTATTGCACTTATGTAAAAACTTTCCTTTACATGCAGCCCGATCGTGTGATGGAGTTTTGCAACAACAATGATCTTCAACTAATAGTCCGAGCCCACGAATGCGTGATGGATGGCTTTGAAAGATTTGCTCAGGGGCATTTGATTACGCTTTTTTCAGCCACCAATTACTGCGGTATGTCTGTTCTTACTGATTTTGGATGCTCAGAGGATTATTTTCGACGTTTTCATCTATATAAGAGGACTCCTCTTCTACTGCTGCAGGTACTGCTAACAATGCTGGTGCCATTTTAGTACTGGGTAGAGATCTTGTTGTGGTTCCAAAACTTATCCACCCAATTCCGCCAGTTTCATCGCCTGAAAATTCACCTGAACGGCATATAGAAGACACTTGGATGCAGGTTGTCTTTTTTCCCCCATATATCTTTTTGTGCTTTGATCTAAGTTGTGTGGGTCTTGTTAACACACACTATCTGTTATAGGAGTTAAATGCTAACAGACCCCCTACACCAACCAGAGGCCGTCCCCAAGTTGCGAACGATCGAGGTTCTTTTGCTTGGACTTAGATTCTTTTCCTATACTTTGAGCTTCATGCTCTTAACATCTGGGATTTCCAGTGATATG</genome_strand>
        <mrna_strand>TTACATGGGCAATTTGGGGATCTCATGCGTCTTTTTGACGAGTATGGTTCCCCGTCAACTGCTGGGGATATTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTGATTACCTCTTCTTGGGAGATTATGTTGATAGGGGCCAGCACAGCTTGGAGACCATTACCCTTCTCCTTGCATTAAAG.....................................................................................GTCGAGTATCCTTACAATATACATTTAATACGTGGGAACCATGAAGCTTCAGATATAAATGCGCTCTTTGGCTTTCGAATTGAGTGCATTGAACGCCTG............................................................................GGTGAGAGAGATGGAATCTGGGCATGGCATCGGATTAATAGATTGTTTAACTGGCTTCCTCTGGCTGCCCTGATCGAGAAAAAAATCATCTGTATGCATGGTGGGATTGGAAGGTCCATTAATCACGTTGAGCAAATAGAGAGTATCCAGCGTCCTATCACTATGGAAGCTGGCTCAATCGTTCTGATGGATTTGTTGTG............................................................................GTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAGGCCCTGGCTTGGTAACTTTTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGATCGTGTGATGGAGTTTTGCAACAACAATGATCTTCAACTAATAGTCCGAGCCCACGAATGCGTGATGGATGGCTTTGAAAGATTTGCTCAGGGGCATTTGATTACGCTTTTTTCAGCCACCAATTACTGCG.........................................................................................GTACTGCTAACAATGCTGGTGCCATTTTAGTACTGGGTAGAGATCTTGTTGTGGTTCCAAAACTTATCCACCCAATTCCGCCAGTTTCATCGCCTGAAAATTCACCTGAACGGCATATAGAAGACACTTGGATGCAG.................................................................................GAGTTAAATGCTAACAGACCCCCTACACCAACCAGAGGCCGTCCCCAAGTTGCGAACGATCGAGGTTCTTTTGCTTGGACTTAGATTCTTTTCCTATACTTTGAGCTTCATGCTCTTAACATCTGGGATTTCCAGTGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313017" ref_strand="+" ref_description="SGN-U313017        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT5G22080.1 | Symbol: None | DNAJ heat shock N-terminal domain-containing protein, similar to J-domain protein Jiv (Bos taurus) GI:15777193; contains Pfam profile PF00226 DnaJ domain | chr5:7310381-7313613 REVERSE | Aliases: None (evalue: 1e-45, score=180) genbank/nr: gi|22326960|ref|NP_680194.1| DnaJ protein family [Arabidopsis thaliana] gi|13374867|emb|CAC34501.1| putative protein [Arabidopsis thaliana] gi|26453260|dbj|BAC43703.1| unknown protein [Arabidopsis thaliana](evalue: 1e-43, score=180)">
      <seq>ggaagaagcagcttaagaaagatactgctagtaaattgaaatcattagttactgaggtaattctgtttagtaggctcttctgcaatgtcttctcatcagattatccaactcgaatgtctatgattaactggaattgttgtccctggatttaaaatggggaattttcttcctgatgttatctgtagctttggttggcctcttttttcttacattgagaaccgtgttaatcattgcccaaccaccttgaactgtgcttatatggcaccttgattttctccaagcaactagagttgttttggactgtctctcacctatctgttagaaaacttttgttgaattcctcatgttgtctaccccaaaggttgagataagggaatgtttgatagtagttaattgagcatttatgaaatccatgttaccatgaaattgaaaattagttttcttaatttgagatggttgatttcttgactaatagggaaagttcgaccaagagcatgagcaatcagaagaattccagcataagctgaagttgaaggtgaaagaaatcttaacggaccaagaatggaggaggagaaaaatggcaatgaggatatcggaagaggaaggtcgcttgaagaaagatgaggaagaaacaaaagagttgtggaaaagaaagcgtgagcatgaagagcagtgggaaggaactagagaaaacagggtgtccagttggagagatttcatgaagggaggaaagaaagttaagaaaggagaaattcgacctccaaagttgaaaacagaagatcccaataaatcttacgttcaacgacctgtgaaacgaggctaaaacacatgtacgtcaactagttttgtttcagtgatatttaaagcttgtatccatagctaacttaattattctgcagcaaaatatatttagcactctattttagatgtatatttagctagacaagtacattcatatatttcatttgacatagatttctgtttatgaactgaatcttgataggattatttgtgatatgttatatgctaatatgcatatacgacgggtgagtattgtggagttttatatatgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcccccccccaaggggcccctttgaattttttaaagggcccccaaaaaattgggggaaaaaaggggaaaaaatttttcccgggggaaaatttttccccaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="84486" stop="19314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84186" g_stop="83598" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83597" i_stop="83521" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83520" g_stop="83413" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="697" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83412" i_stop="82273" i_length="1140">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82272" g_stop="82234" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="736" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82233" i_stop="82112" i_length="122">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82111" g_stop="81763" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="1075" r_length="339" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81762" i_stop="81189" i_length="574">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81188" g_stop="81172" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1076" r_stop="1092" r_length="17" r_score="0.882"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81171" i_stop="80613" i_length="559">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.58"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80612" g_stop="80475" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1093" r_stop="1223" r_length="131" r_score="0.514"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-U313017" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>1240</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84186" e_stop="83598"/>
          <exon e_start="83520" e_stop="83413"/>
          <exon e_start="82272" e_stop="82234"/>
          <exon e_start="82111" e_stop="81763"/>
          <exon e_start="81188" e_stop="81172"/>
          <exon e_start="80612" e_stop="80475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAGGTAATTCTGTTTAGTAGGCTCTTCTGCAATGTCTTCTCATCAGATTATCCAACTCGAATGTCTATGATTAACTGGAATTGTTGTCCCTGGATTTAAAATGGGGAATTTTCTTCCTGATTTTATCTGTGGCTTTGGTTGGCCTCTTTTTTCTTACATTGAGAACCGTGTTAATCATTGCCCAACCACCTTGAACTGTGCTTATATGGCACCTTGATTTTCTCCAAGCAACTAGAGTTGTTTTGGACTGTCTCTCACCTATCTGTTAGAAAACTTTTGTTGAATTCCTCATGTTGTCTACCCCAAAGGTTGAGATAAGGGAATGTTTGATAGTAGTTAATTGAGCATTTATGAAATCCATGTTACCATGAAATTGAAAATTAGTTTTCTTAATTTGAGATGGTTGATTTCTTGACTAATAGGGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTGAAAGAAATTTTAACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGAGGGTACTTATACCAGTTTCTTCTCTTACTCAACATGTTTTTAGATTTTAATTGAGAATTTATAACTTGATGTTGTGTAGATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACTAGAGAAAACAGGGTTAGTTTTCAATGCATTATGTATCTTGCTGTTTCCGAATACATGAACCTTGCAGACTTATATTACAAACTTCTATATATCTAGTCAATTGTCTAGTGTTGGTTCACAGTTTGTTTTATCCGGAAAAAAGTTCCAATGCTACATTTGGCATGTTTGTTTTATTCATTTGAAGTATGTTTTTCTTTCAAATAATTCAGCATGGTCGAAGTTTATACATACTACTTAATAGTCTTGTTTCATGAGTTGTTAGAATTATATGTGCAGTTTTATGTACATTTTCTGCAGAAAATCTAACCTTTCTTATGTCCTCTGCTTGTGTTTGATGTGGTTATAAAATAAAATCCCCTGAAGTAACTTCTACTTGAAAGTTGCATCTCGGTGTATTCTTGTATTTTGTGTAAACGTCTAAGATAAAAAGTATTTTTTTGGTTCACTTTTCTTGTTCTAAAAGGAGCAGAAAAAGAAACTAGGCTATTCCTTCTTGCTTTAAGGGGGGAGGGGGTTCTGGCTCTGTGCTGGGTCATGAGTATCTCATCTCTTAACTAAGAGCCCAAGACATGATGCTACAAGAGCCAATCAAATGACTCTCTTGATTTCAGGATCAAGAAGTTGTTGACGATTGCCTATGAACTTGAGTGGTTTATGCCATCTATTATGTAACTTTACTTTTACTATGAGGACTCTTCTTTGAATCTGCAGCGTCTTTTTTTTTTTTGTAGCAAATGAATGATACAACTAGTAACACGGGTGTTTGGCGTTCTTTGGAACATAATAATCTTTTTTTTTTGTTTCCCACTTGGTGTCCGGTATCCATTTTGGGGCACCAACTGATCCGGATTTGTGCCAACTGCTGCGCAAGATTCATTAAATGGAGATGTGTTCTCTACCAGAACTTTTTCCATTTTCAGGTCTCAATGCTGAGACTTCTGGTTAAAGATGGAGGAATTCTAACCATCCGACCACAATCCCGGGTGACAAACATGATAATATTATTGAACCTAAGGTCTTCAGAACATGATAATTGTTATGAACCTAATCTTCATGATGATATGAAATTGTAAAGTTGAAGACAACCGACATGTTCCAAAATCTAGACTTACTGAATTGAGTTTCTAAAACTTTTCTTCTATTTCTCATCAGGTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAGGTAAGACTGTTATTACCTTATATTGCAAACACTATACTTTTCCCATCCCATATGAAGATAATGAGGGGAATGTTTATAGGTCGACGAGAACACTAATGAACAAGTTCTCTGTGCTTCTGCAGGTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTTTAGATGTATATTTAGCTAGACAAGTACATTCATATATTTCATTTGACACAGATTTCTGTTTATGAACTGAATCTTGATAGGATTATTTGTGATATGTTATATGCTAATATGCATATACGACGGGTGACTATTGTGGAGTTTTATATATGAAACTTGATCCCTTTATATACATAAACATATTGGTCGTTTTTGAACAAATTGAATAATTTTATCCATTAAAATTTGAAGCTAATCGATTCTTTGTAGGAGTAGCACATAAAAACTTTTCTGGAAGAATTATATTTATAGGTCAAAAATTGTAGTATGTGAAAAGGCACGTAAAAATTTAAAGGGCCAATTAATATTAAAATAAATATACATAAAAAATAATAATCCATGAACAATAACTTTGTAAAATACATGTATCTACTTTAACTTCTTGTCTTCAAGAAGTAATTGAATATTTATTTCCTTTTTCTATTTAGTTTAGTTAGGTTTATATCATTTTTAGCTAATAAATAAATATGTTTATCATCAATATAATCACTTTAAAATAAATTTATTGTATCATATTAGTGATATGATAATATTTTTATTATATTTTAATATGAACTCAAAAATTATAAGTGTGTATAATTAAGAGTTGGATAACTAAGTGCAAATCATGATATAAAAACATAAGACTATCAACAATTTTTCTTCAATAACGTGACAAATCTAATACATGAATCATATTAAATTGCTTGTAAAAAAGATAAAAAAAATTTGGCATTGAAACACTAATGATAATTTGGTTTTAAAGATAGAGGAACAATGTTAATTTAGTGAATGAGAAATGGTCATTTAATTAAATTTTTTAGAAACATGTAATTATTTAATTAACTAATTTTTTATAAAAAATAATTTAATAGGGGTAAAACCGTTAACTTTTTTTTTTTGTTCCCACTTCTAGTAATACATGATGATATGATTTTGTTTGTCAATGTACAATGGGAAACTTTTGACTGCTTCTGTGCCTGCAATCTGTCTGAAGGGCTGTTGTTGTGTATTGTACTGAGTGCCTCAAAAAGCCTTATAGATCTTCAAAGAGGGATATATTTGTCTCCACAAATGGCTTCATGCCTATGTACATATCACTGGAAATCCCAGATGTTAAGAGCATGAAGCTCAAAGTATAGGAAAAGAATCTAAGTCCAAGCAAAAGAACCTCGATCGTTCGCAACTTGGGGACGGCCTCTGGTTGGTGTAGGGGGTCTGTTAGCATTTAACTCCTATAACAGATAGTGTGTGTTAACAAGACCCACACAACTTAGATCAAAGCACAAAAAGATATATGGGGGAAAAAAGACAACCTGCATCCAAGTGTCTTCTATATGCCGTTCAGGTGAATTTTCAGGCGATGAAACTGGCGGAATTGGGTGGATAAGTTTTGGAACCACAACAAGATCTCTACCCAGTACT</genome_strand>
        <mrna_strand>GGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAGGTAATTCTGTTTAGTAGGCTCTTCTGCAATGTCTTCTCATCAGATTATCCAACTCGAATGTCTATGATTAACTGGAATTGTTGTCCCTGGATTTAAAATGGGGAATTTTCTTCCTGATGTTATCTGTAGCTTTGGTTGGCCTCTTTTTTCTTACATTGAGAACCGTGTTAATCATTGCCCAACCACCTTGAACTGTGCTTATATGGCACCTTGATTTTCTCCAAGCAACTAGAGTTGTTTTGGACTGTCTCTCACCTATCTGTTAGAAAACTTTTGTTGAATTCCTCATGTTGTCTACCCCAAAGGTTGAGATAAGGGAATGTTTGATAGTAGTTAATTGAGCATTTATGAAATCCATGTTACCATGAAATTGAAAATTAGTTTTCTTAATTTGAGATGGTTGATTTCTTGACTAATAGGGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTGAAAGAAATCTTAACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGAGG.............................................................................ATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACTAGAGAAAACAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAA..........................................................................................................................GTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAA----G---C---TTGTATCCATAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCACTCTATTTTAGATGTATATTTAGCTAGACAAGTACATTCATATATTTCATTTGACATAGATTTCTGTTTATGAACTGAATCTTGATAGGATTATTTGTGATATGTTATATGCTAATATGCATATACGACGGGTGAGTATTGTGGAGTTTTATATATGAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAATCCCCCCCCCAAGGGGCCCCT-T-TG-AATT--TTTTAAAGGGC-CCCCAAAAAATTGGGGGAAAAAAGGGGAAAAAATTT-TTCCCGGGGGAAAATTTTTCCCCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336300" ref_strand="-" ref_description="SGN-U336300        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G27210.1 | Symbol: None | kelch repeat-containing serine/threonine phosphoesterase family protein, similar to SP:P48482 Serine/threonine protein phosphatase PP1 isozyme 2 (EC 3.1.3.16) {Arabidopsis thaliana}; contains Pfam profile PF00149: Calcineurin-like phosphoesterase | chr2:11636997-11643786 FORWARD | Aliases: T22O13.2, T22O13_2 (evalue: 2e-32, score=136) genbank/nr: DNA(evalue: 2e-32, score=142)">
      <seq>tcttgttgtggttccaaaacttatccacccaattccgccagtttcatcgcctgaaaattcccctgaacggcatatagaagacacttggatgcaggagttaaatgctaacagaccccctacaccaaccaaaggccgtccccaagttgcgaacgatcgaggttcttttgcttggacttaaattcttttcctatactttgagcttcatgcttttaacatttgggatttccagtgatatgtacataggcatgaagccatttgtggagacaaatatatccctctttaaaaatctataaggctttttgaggcactcagtacaatacacaacaacagcccttcagacagattgcaggcacaaaagcagtcaaaagtttcccattgtacattgacaaacaaaatcatatcatcatgtattactaaaagtgggaacaaaaaaaaaaagttaacggttttacccctattaaattattttttataaaaaattagttaattaaataattacatgttttttaaaaatttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="80190" stop="81386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80490" g_stop="80583" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80584" i_stop="80664" i_length="81">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80665" g_stop="81087" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="517" r_length="423" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="519" polyA_stop="548"/>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-U336300" ref_strand="-">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336300" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="80490" e_stop="80583"/>
          <exon e_start="80665" e_stop="81087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGTTGTGGTTCCAAAACTTATCCACCCAATTCCGCCAGTTTCATCGCCTGAAAATTCACCTGAACGGCATATAGAAGACACTTGGATGCAGGTTGTCTTTTTTCCCCCATATATCTTTTTGTGCTTTGATCTAAGTTGTGTGGGTCTTGTTAACACACACTATCTGTTATAGGAGTTAAATGCTAACAGACCCCCTACACCAACCAGAGGCCGTCCCCAAGTTGCGAACGATCGAGGTTCTTTTGCTTGGACTTAGATTCTTTTCCTATACTTTGAGCTTCATGCTCTTAACATCTGGGATTTCCAGTGATATGTACATAGGCATGAAGCCATTTGTGGAGACAAATATATCCCTCTTTGAAGATCTATAAGGCTTTTTGAGGCACTCAGTACAATACACAACAACAGCCCTTCAGACAGATTGCAGGCACAGAAGCAGTCAAAAGTTTCCCATTGTACATTGACAAACAAAATCATATCATCATGTATTACTAGAAGTGGGAACAAAAAAAAAAAGTTAACGGTTTTACCCCTATTAAATTATTTTTTATAAAAAATTAGTTAATTAAATAATTACATGTTTCTAAAAAATTTA</genome_strand>
        <mrna_strand>TCTTGTTGTGGTTCCAAAACTTATCCACCCAATTCCGCCAGTTTCATCGCCTGAAAATTCCCCTGAACGGCATATAGAAGACACTTGGATGCAG.................................................................................GAGTTAAATGCTAACAGACCCCCTACACCAACCAAAGGCCGTCCCCAAGTTGCGAACGATCGAGGTTCTTTTGCTTGGACTTAAATTCTTTTCCTATACTTTGAGCTTCATGCTTTTAACATTTGGGATTTCCAGTGATATGTACATAGGCATGAAGCCATTTGTGGAGACAAATATATCCCTCTTTAAAAATCTATAAGGCTTTTTGAGGCACTCAGTACAATACACAACAACAGCCCTTCAGACAGATTGCAGGCACAAAAGCAGTCAAAAGTTTCCCATTGTACATTGACAAACAAAATCATATCATCATGTATTACTAAAAGTGGGAACAAAAAAAAAAAGTTAACGGTTTTACCCCTATTAAATTATTTTTTATAAAAAATTAGTTAATTAAATAATTACATGTTTTTTAAAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313016" ref_strand="+" ref_description="SGN-U313016        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: AT5G22080.1 | Symbol: None | DNAJ heat shock N-terminal domain-containing protein, similar to J-domain protein Jiv (Bos taurus) GI:15777193; contains Pfam profile PF00226 DnaJ domain | chr5:7310381-7313613 REVERSE | Aliases: None (evalue: 3e-106, score=382) genbank/nr: gi|22326960|ref|NP_680194.1| DnaJ protein family [Arabidopsis thaliana] gi|13374867|emb|CAC34501.1| putative protein [Arabidopsis thaliana] gi|26453260|dbj|BAC43703.1| unknown protein [Arabidopsis thaliana](evalue: 2e-104, score=382)">
      <seq>ggagacaacagcgatacagccaccgcaccgtcgccggcgaaaatcgccgcccaggaagatgcgctactgaagcaattcttcgctgaggtcagtgaagttgagcgcgataatgaagttaacaggatcctttcatgtttcaagttgaatccatttgattatcttaacttgtcattcgattcatccattgatgaagtcaaaagacagtatcgtaagttatctttgcttgttcaccctgacaagtgcaagcatccacaagcaaaggaggcatttggcgctttagcaaaagcccagcaattattacttgaccctcaggagagggattatattctgaaccaggttaatgcagcaaaagaagagctgagagcacagtggaagaagcagcttaagaaagatactgctagtaaattgaaatcattagttactgagggaaagttcgaccaagagcatgagcaatcagaagaattccagcataagctgaagttgaaggtgaaagaaattttaacggaccaagaatggaggaggagaaaaatggcaatgaggatatcggaagaggaaggtcgcttgaagaaagatgaggaagaaacaaaagagttgtggaaaagaaagcgtgagcatgaagagcagtgggaaggaactagagaaaacagggtgtccagttggagagatttcatgaagggaggaaagaaggttaagaaaggagaaattcgacctccaaagttgaaaacagaagatcccaataaatcttacgttcaacgacctgtgaaacgaggctaaaacacatgtacgtcaactagttttgtttcagtgatatttaaagcttgtatcaatttgtatccgtagctaacttaattattctgcagcaaaatatatttagcgccctattttagatgtatatttagctagacaagtacattcatatatttcatttgacacagatttctgtttatgaactgaatcttgataggattatttgtgatatgttatatgctaatatgcatatacgacgggtgactattgtggagttttatatatgaaacttgatccctttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="88628" stop="81440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88328" g_stop="88207" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88206" i_stop="87220" i_length="987">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87219" g_stop="87129" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="213" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87128" i_stop="87040" i_length="89">
            <donor d_prob="0.817" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87039" g_stop="86979" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="274" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86978" i_stop="85307" i_length="1672">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85306" g_stop="85229" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="352" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85228" i_stop="84205" i_length="1024">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84204" g_stop="84131" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="426" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84130" i_stop="83712" i_length="419">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83711" g_stop="83598" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="540" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="83597" i_stop="83521" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="83520" g_stop="83413" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="648" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="83412" i_stop="82273" i_length="1140">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="82272" g_stop="82234" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="687" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="82233" i_stop="82112" i_length="122">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="82111" g_stop="81740" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="1059" r_length="372" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-U313016" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1059</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88328" e_stop="88207"/>
          <exon e_start="87219" e_stop="87129"/>
          <exon e_start="87039" e_stop="86979"/>
          <exon e_start="85306" e_stop="85229"/>
          <exon e_start="84204" e_stop="84131"/>
          <exon e_start="83711" e_stop="83598"/>
          <exon e_start="83520" e_stop="83413"/>
          <exon e_start="82272" e_stop="82234"/>
          <exon e_start="82111" e_stop="81740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAGGTTCGCCTCTTTATCTCTATCTCGCTATCTACATATGGAAACTTTTATCATGTTAATCAATTGTAATTATAGTTCTTCATCGTTGCGAATTTGTTTGGCATTTAGTCGGTTTTTTTTGCATGTTCATATCTCCAATGAGCTTAGAGTAGTTTTATGCTAATTTGGACGGGTAATCTTAGCATGAATTTGGAAGAAAGGAAGCTTAAGGATAGTAAGTTTAGTAAATTACAGCTTGTTTGGATGGTTGTTACCTATTGTTTGTATCGCATTTGTGTTGATAGTTTAAATACAATGTTTGATTTGATCTCATTTACCTTTAGCCTTAAGCCTTTAGCCATTTAAAAGAAGACATTTTCCTAATCCGTTTCGAAGTTTGTTTTGGATTGATAATGTAAAAATTGCAGCCAAAAAGGGCCAGGATGTACAAATATCTGTCCACCTTTGAAGGAGTTGAAAAACTAATACAGGATAACACAGCTCTCCATTATCCCAACCTGGAAAAGGAATAGACTTCACTCGTTGTTTGCTTCCCCCGTCTTATAAAACCTTCCTCTTTGCACCAACTTCAGCTATAGTTTTTTGATCTGATAGTTCTGGATGTTGCATCCTTTCGAGGTAGAGTGTAAGGTAGAAAGTTTCATTTATATGTAGATTTCAAGACGGCTAACCTGTACGTCCATAAAATACTAGGGGTCAGTTATTCTATTTACGCAGGTTGGTGTTAACACCCTCGTCACTACTAGTTTGGTTATCTCTTTATTGTAATTGATGCTTAAGCTATCCTTTTTCTTTACAATATTATGTTTTGAGTGTGTGCATCTTGGAGTGTTTGCTTTTTGATATGGGGGGTTTGTTTGGTCAGAACAATATAGAATTCTATATCTATTTCTTGTTTCTTTTCTGAGAAGGGTATCTATTTCTTATCTGTACTTTATTTCTATCATGCTAAGTTGTCGTAATCTGGTTTTGAATTTAAAAACTGTGCAGGATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAGGTGTGAATTTGTCAATATGTTTTCCATTGACTCAAACCTTTCTCTTATTCTGCCAAATCATGTAATGTGTTCACTTGAATTACCTGCAGTTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCGGTGAGGACGATGCTCTTTCTGTGTGCCACTTTATATAATTCCATTCATTTTAAGTAGTTTCTGGAGTGAAAGATTATCTCATTTGTCCGAACTCTTTTGGTTAGGATAAATCTGGCGAAGTAACGGAATTTTGCACATCCTATAGCATTTTAACTGCTAGATATACAACTATGCATTATAATTCTGAGTGTAGTTTTACCGAATTTGTTGCAATTACCTTCAAGAAACCCTCTTATCACATGGAATTGCCTAGTACTGATGAAGAATGTTAATTATAGCAGAAGCTTTCTCTTTTTGAACTAACTCTAGAAATGCGACTCAAGGATAACTTTCCAACCGATTCAATGAACTTGCAGTTCATTTATTTTCAATATTTAATGACTCGTGGTTGCTGATGAAATGCACACAAGTAACATTTGACAGTTTTTGTCACTTGAGATCATGCGAAGCAGTTTATTTTTGGGTGCACTATGACTGCTTAATCTACTATTAAAAAATCCTGAGATCATCTTCGTACTTTCTGTGATAGAGTTATTTCTAAGGGCCTCCTTGACTAGTGTTTTTCCAATTTGTTTGTACAATCATATGGCTAGAGTGTCTTCACATGTGCTGGTTATTTTAACTTACACTGAAACAGATGTTCTTTTCAAGGAAGAGTACATGTGATATGAGTTTGTTGTTTTTATATACTTTTAAGCTGACATCAATTCTGCATATCAGATATTTTTATTTAACTGGTTACTTGTGTGTATTAATAGACAAAACAGTCAAAGCTAAACTGCCATCCTAAACTGTCAAAGTTTTTCTTGATCACCAAGCTTGGCTTGATGCTCGCCCAAGTGGCTTGAGCTCGCCAATGTGGTGCTGCCAACGCCAAAGTGAGGCATTGCAGCTGCCCATTGTCAAAGTGCTGCATTGTATTAAAGTGAGGCTTGCTGATACCAAACTTGGCAGTCTCTCTTTCCCTCAGGCTCCAAGCTATCATCCATATGTGGAGACCCTCCCTTTTGTGCTCCATAAGATCATCCAAGCTCCTCCATGTATTCTTATTGTGAGCTCAAATGGATCGTAATAGTTGGTCAAACTAGCCGTGCTCGTATCAGTCAGTTCTCCATCTATCCCCTTCTATTGCCTGAAAACCTGCTTCGTCCGAACTGTGTAGAGTTGCCCTATCAAATGATTTTTTTTGGCCAGCAAACATTGTTATCACTTCAAATAGCAGCCCTAGGAAATTCGTAAAAGACACCTAATGTTGGAATATGTTTTTCTTTTCAAGAGAATTTCAAGTACTATCAAAAGAGTCCACTTTCAGAGACACTGCAATACCTCAAAGTTATATGTACAATCTTTGTCCTGTTGCTGTTTCTTGTCGCATTAGTGAGAGACCAGTTTAAATAGCTGTTTGGAATGAGAATTCCCTCATTTTTAGGAGAACCATCAGGGTAGACATGTTAAGCGCAGAATTAGTAGCAGCAATGGAGTGTTACATATAGGTGTTCAACCCTTTCTGATTGTCAAAATTAGTCTTTCAGAGCTTCATTGTAGTTTTGCAAATTGAAATTTTGATAAGTTGACTGTTTTACTGCTTTAGATAGGTTAACGCTATATTTCTGAAAAATTTTGCTTCCTTGTGGCAAATTTTAACCAAATTGTTTTCATTTTATATTTGCAGCTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAATGCAGCAAAAGGTCGGCTGCCCTTTTCTTCAGATTGTCCTCTTGTTTTTGTTTTATCTTGCTTGTGACATTGTCACTGCATCAATAAAGGAGGTAGAAACTGGAGTTGGGAGCCTAAAGGGCCACAATTTGAAGCTAAAATTCCAAAACCGACGACGAGTTGTGGGATGAACAAAAAGGGACAAAGCCCCTCCCCATCCCCAGCGACAAGTAAAAGAGTTTTGATAGCCCACACCAAACGGTCGTTTGGCATGTGGACCATTTTTAATCAATTAGCCGTGCAGCTTTACACGACTTGTTTAGTTTTATAGTTTTAATAAGTGTTAGCAAGCCAACAACTAGCCCTTTTTTCTAAATCATTATTATTTTTTCCAGGATTTGTTTCTTGTTGATTCAATCAACTAGTCGTGTGTTAAAAAACGACTAGTTGAAAAAATGTTAAGGAATCAACTGGAAACAAATCCTCAAAAAAATGACAAGGAATATGTTCAGGAATCTGAATCTAGACCATTCCAAAATAAAATCATTAGCTAGTCATGTGGTAGCCAACAACTTCTAATTTTTTAAAAAGGCTAGTCTTTGGCTGGCCAGCGCTTGATATGAAATAAAATTATTAAATGAGTCATGTAATTGATTTTAAAAAATGGCCTGCACACCAAACAGCCGTTCGGCCTTCAAACTTTTTTGCTAGTCGTTGGGGATGAGGCGTGTTGTCCCTTTTGGTTCATCCCACAATTCGTTGTCCACTTTAGAATTATAGCTTATTCTGGTCCTTTCGGCTCTGGACTTGTAGAAACTGTTTCTGTTGTTATTTGATTGTGGATATTGTCAAAACTATTAGTTATTACATATTTGGCCATACTTATATGGGCAGAGTAACATGGCAAATGCTTCTTTTGTTTGGTGATGTCAGTTCTTGTTTTGTCACTAAATTAGTGGAAACCATAATGTTCTTCATTGAGCTGTATCTTTTTGTGTGGCTTGTGTCTAACACGGAATGTCTCTTTATTTTTCCTCCCATTGGATATGATCACAGAAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAGGTAATTCTGTTTAGTAGGCTCTTCTGCAATGTCTTCTCATCAGATTATCCAACTCGAATGTCTATGATTAACTGGAATTGTTGTCCCTGGATTTAAAATGGGGAATTTTCTTCCTGATTTTATCTGTGGCTTTGGTTGGCCTCTTTTTTCTTACATTGAGAACCGTGTTAATCATTGCCCAACCACCTTGAACTGTGCTTATATGGCACCTTGATTTTCTCCAAGCAACTAGAGTTGTTTTGGACTGTCTCTCACCTATCTGTTAGAAAACTTTTGTTGAATTCCTCATGTTGTCTACCCCAAAGGTTGAGATAAGGGAATGTTTGATAGTAGTTAATTGAGCATTTATGAAATCCATGTTACCATGAAATTGAAAATTAGTTTTCTTAATTTGAGATGGTTGATTTCTTGACTAATAGGGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTGAAAGAAATTTTAACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGAGGGTACTTATACCAGTTTCTTCTCTTACTCAACATGTTTTTAGATTTTAATTGAGAATTTATAACTTGATGTTGTGTAGATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACTAGAGAAAACAGGGTTAGTTTTCAATGCATTATGTATCTTGCTGTTTCCGAATACATGAACCTTGCAGACTTATATTACAAACTTCTATATATCTAGTCAATTGTCTAGTGTTGGTTCACAGTTTGTTTTATCCGGAAAAAAGTTCCAATGCTACATTTGGCATGTTTGTTTTATTCATTTGAAGTATGTTTTTCTTTCAAATAATTCAGCATGGTCGAAGTTTATACATACTACTTAATAGTCTTGTTTCATGAGTTGTTAGAATTATATGTGCAGTTTTATGTACATTTTCTGCAGAAAATCTAACCTTTCTTATGTCCTCTGCTTGTGTTTGATGTGGTTATAAAATAAAATCCCCTGAAGTAACTTCTACTTGAAAGTTGCATCTCGGTGTATTCTTGTATTTTGTGTAAACGTCTAAGATAAAAAGTATTTTTTTGGTTCACTTTTCTTGTTCTAAAAGGAGCAGAAAAAGAAACTAGGCTATTCCTTCTTGCTTTAAGGGGGGAGGGGGTTCTGGCTCTGTGCTGGGTCATGAGTATCTCATCTCTTAACTAAGAGCCCAAGACATGATGCTACAAGAGCCAATCAAATGACTCTCTTGATTTCAGGATCAAGAAGTTGTTGACGATTGCCTATGAACTTGAGTGGTTTATGCCATCTATTATGTAACTTTACTTTTACTATGAGGACTCTTCTTTGAATCTGCAGCGTCTTTTTTTTTTTTGTAGCAAATGAATGATACAACTAGTAACACGGGTGTTTGGCGTTCTTTGGAACATAATAATCTTTTTTTTTTGTTTCCCACTTGGTGTCCGGTATCCATTTTGGGGCACCAACTGATCCGGATTTGTGCCAACTGCTGCGCAAGATTCATTAAATGGAGATGTGTTCTCTACCAGAACTTTTTCCATTTTCAGGTCTCAATGCTGAGACTTCTGGTTAAAGATGGAGGAATTCTAACCATCCGACCACAATCCCGGGTGACAAACATGATAATATTATTGAACCTAAGGTCTTCAGAACATGATAATTGTTATGAACCTAATCTTCATGATGATATGAAATTGTAAAGTTGAAGACAACCGACATGTTCCAAAATCTAGACTTACTGAATTGAGTTTCTAAAACTTTTCTTCTATTTCTCATCAGGTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAGGTAAGACTGTTATTACCTTATATTGCAAACACTATACTTTTCCCATCCCATATGAAGATAATGAGGGGAATGTTTATAGGTCGACGAGAACACTAATGAACAAGTTCTCTGTGCTTCTGCAGGTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTTTAGATGTATATTTAGCTAGACAAGTACATTCATATATTTCATTTGACACAGATTTCTGTTTATGAACTGAATCTTGATAGGATTATTTGTGATATGTTATATGCTAATATGCATATACGACGGGTGACTATTGTGGAGTTTTATATATGAAACTTGATCCCTTTATATACATAAA</genome_strand>
        <mrna_strand>GGAGACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAG.........................................................................................TTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAATGCAGCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTGAAAGAAATTTTAACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGAGG.............................................................................ATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACTAGAGAAAACAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAG..........................................................................................................................GTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTTTAGATGTATATTTAGCTAGACAAGTACATTCATATATTTCATTTGACACAGATTTCTGTTTATGAACTGAATCTTGATAGGATTATTTGTGATATGTTATATGCTAATATGCATATACGACGGGTGACTATTGTGGAGTTTTATATATGAAACTTGATCCCTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313014" ref_strand="+" ref_description="SGN-U313014        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT5G22080.1 | Symbol: None | DNAJ heat shock N-terminal domain-containing protein, similar to J-domain protein Jiv (Bos taurus) GI:15777193; contains Pfam profile PF00226 DnaJ domain | chr5:7310381-7313613 REVERSE | Aliases: None (evalue: 3e-15, score=78.6) genbank/nr: DnaJ(evalue: 4e-14, score=80.9)">
      <seq>ggatttgtgccaactgctgcgcaagattcattaaatggagatgtgttctctaccagaactttttccattttcaggtctcaatgctgagacttctggttaaagatggaggaattctaaccatccgaccacaatcccgggtgacaaacatgataatattattgaacctaaggtcttcagaacatgataattgttatgaacctaatcttcatgatgatatgaaattgtaaagttgaagacaaccgacatgttccaaaatctagacttactgaattgagtttctaaaacttttcttctatttctcatcaggtgtccagttggagagatttcatgaagggaggaaagaaggttaagaaaggagaaattcgacctccaaagttgaaaacagaagatcccaataaatcttacgttcaacgacctgtgaaacgaagctaaaacacatgtacgtcaactagttttgtttcagtgatatttaaagcttgtatcaatttgtatccgtagctaacttaattattctgcagcaaaatatatttagcgccctattttagatgtatatttagctagacaagtacattcatatatttcatttgacacagaatttctgttatgaactgaaatctgatanggatatttgtgatatngtatatgctaatatgcatatacgacgggtgactattgtggagntttatatatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="82878" stop="81463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82578" g_stop="82234" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82233" i_stop="82112" i_length="122">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82111" g_stop="81763" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="694" r_length="349" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-U313014" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82578" e_stop="82234"/>
          <exon e_start="82111" e_stop="81763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTGTGCCAACTGCTGCGCAAGATTCATTAAATGGAGATGTGTTCTCTACCAGAACTTTTTCCATTTTCAGGTCTCAATGCTGAGACTTCTGGTTAAAGATGGAGGAATTCTAACCATCCGACCACAATCCCGGGTGACAAACATGATAATATTATTGAACCTAAGGTCTTCAGAACATGATAATTGTTATGAACCTAATCTTCATGATGATATGAAATTGTAAAGTTGAAGACAACCGACATGTTCCAAAATCTAGACTTACTGAATTGAGTTTCTAAAACTTTTCTTCTATTTCTCATCAGGTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAGGTAAGACTGTTATTACCTTATATTGCAAACACTATACTTTTCCCATCCCATATGAAGATAATGAGGGGAATGTTTATAGGTCGACGAGAACACTAATGAACAAGTTCTCTGTGCTTCTGCAGGTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTTTAGATGTATATTTAGCTAGACAAGTACATTCATATATTTCATTTGACACAG-ATTTCTGTTTATGAACTGAATCTTGATAGGATTATTTGTGATATGTTATATGCTAATATGCATATACGACGGGTGACTATTGTGGAGTTTTATATATGAAA</genome_strand>
        <mrna_strand>GGATTTGTGCCAACTGCTGCGCAAGATTCATTAAATGGAGATGTGTTCTCTACCAGAACTTTTTCCATTTTCAGGTCTCAATGCTGAGACTTCTGGTTAAAGATGGAGGAATTCTAACCATCCGACCACAATCCCGGGTGACAAACATGATAATATTATTGAACCTAAGGTCTTCAGAACATGATAATTGTTATGAACCTAATCTTCATGATGATATGAAATTGTAAAGTTGAAGACAACCGACATGTTCCAAAATCTAGACTTACTGAATTGAGTTTCTAAAACTTTTCTTCTATTTCTCATCAGGTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAG..........................................................................................................................GTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAAGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTTTAGATGTATATTTAGCTAGACAAGTACATTCATATATTTCATTTGACACAGAATTTCTG-TTATGAACTGAAATCTGATANGGATATTTGTGATATNGTATATGCTAATATGCATATACGACGGGTGACTATTGTGGAGNTTTATATATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328666" ref_strand="+" ref_description="SGN-U328666        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:7297065-7299032 REVERSE | Aliases: None(evalue: 2e-48, score=189) genbank/nr: gi|54261725|gb|AAV31166.1| At5g22040 [Arabidopsis thaliana] >gi|13374863|emb|CAC34497.1| putative protein [Arabidopsis thaliana] >gi|22326954|ref|NP_680191.1| expressed protein [Arabidopsis thaliana] >gi|58531330|gb|AAW78587.1| At5g22040 [Arabidopsis thaliana] (evalue: 2e-46, score=189)">
      <seq>caaaattctgtaaggaagaaaaaaatgagacgtcccggcggcggacattccggcggtgggcattacggtggtgctgatgccggcgccgatgctacgtataactccggccatcaaacgatgcaacatcaacatcaacagcaacaacagcagcagatcaagtcggaacatcatcaacaatggagatgggaacgagagagcccgaaattacctacaaattctatgtctccgaacatgtatcctgaaggccaggggagtgaagcatctagatcctactaccagggccagaggactgatccaaggttggcattagagaatcaaggtggcaagaatcctagagcactgcctcgtgaagaaggcatggatattggttatgaagataagcctgtacagcagactttggaaggtcttgaaaaaaaattccttgatgatataatgaaactgaccaaggagcaaaatgatgcagaggatgctgaaaattctaggcatagggagcggataaatgcaatcaacacacaatatcaagaacagctagttgcccttcgtgcccggcaagctaatcacagagatgaagtccttcgaagggagtgtcatgccagaaaactacagtatgagcaagttgctttggacaactatcgacacagcaacatgagcactagcaatgctcgtggatatgtgggaaactctccagcaggagaacgacaagttgcctacaactctccagcaggagaacgacaagcagcctataatgctgatagttacgactcttacagggagaatgctcgatatattggcaacagcggaagagatcacggatatgaacctagagtacaatacccaggcggtcgcgtctatgaaactggttcacgctattattgaataactgcttagaatagtattgaatctttcgtttagtttgctttgactaggtggtcgcgtctatgacactggttcacgctactcgtctttatagcttttatcagattggataaaagagtcacatatgtactttacttttttctgaatgattcatgatcttggcatggactagtgatgaagtttgatctgttactgttcctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="97432" stop="104320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97732" g_stop="97975" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97976" i_stop="99903" i_length="1928">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99904" g_stop="100151" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="492" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100152" i_stop="103432" i_length="3281">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103433" g_stop="104019" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="1079" r_length="587" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-U328666" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1079</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97732" e_stop="97975"/>
          <exon e_start="99904" e_stop="100151"/>
          <exon e_start="103433" e_stop="104019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTCTGTAAGGAAGAAAAAAATGAGACGTCCCGGCGGCGGACATTCCGGCGGTGGGCATTACGGTGGTGCTGATGCCGGCGCCGATGCTACGTATAACTCCGGCCATCAAACGATGCAACATCAACATCAACAGCAACAACAGCAGCAGATCAAGTCGGAACATCATCAACAATGGAGATGGGAACGAGAGAGCCCGAAATTACCTACAAATTCTATGTCTCCGAACATGTATCCTGAAGGTAATTTGTTGGATTTTCTAGTGTTTTTTGCTTATTTTTACTTGCTGTTTTGTAGATCAATTTATTAAAAGTTTCATTTTTTTAGATACCCTTTACTGATTTCCCCTGAAAACTAGGTTTTCTGTTTAGTTTCCTTTTGGTTGTGCTTGCTTACATTGCCGGTGCCAAGTCCGGATAATAGTTAGTTACTAAGATCTGATTATGAGTTATTGAATGGTAAGATGAATAAAGTGTGTTTGCTTGTGTGTTTAAAAAAAGATGAATAAAAATTTTGAATTGAAGAATGAAGGTTGTGATAGGCTGATAGCTAGCGTAAACTTGCGAATTTATGATGAATCCAACACGTTGGGGATTGAGGATTAGCTATAGTAGTAGTAGTTATTGGTTTAGTAGTATTAGTTTCTGATTCTTTGCTAGGCAATATTTTGTTTTGGAAATAATCCTTGCAATAATCATAACCACAAAAACTACTTTTTTGTTCCATAACTGTGGTTCAGGGCTAACTTGTGCACATCCCCATTAATTCCATGTGGTACCTACTATTTCTAATCAACAGAAATATATTGTAACTCTGTCCACCAAGGCTCGTATAAATGGGAAGAAATCAGTAGTGTTTTTGCCTCCTTTGGACTTTGAAGAACCTCAAAGGTCATGATTTTCAATCTTCTTTATTGTGGAAATCTTGCTTCCTCTTGGCAAAAGATCCACAAAACTGGGGCACCTATTTGAGATTAAGGTTTAGTTATTCTAATAACACTTGTATTAAGGTCGGTAATCTTTAGGAGCTTTTTTAAATTTGGTTAAAGACTTTTGTGCTAGTTTGCAGATGAGTGTGAGATTTTGGAAACATTTTGTTTTAAAGGTCCAAATTTGCCTTAAAAAGACTAGTTTTTGATGTTGTAACTGTAGCAGTGTACTTGTGGATCCATATAAGAATTTGTATGGGACTGCACCCGTTACTTCTGGCAGCTCAACTCTAATAAAGCTTATGCAATGACCACTCTAGGCAGACATTTCAGATGCTTCAACTACAAGCCAATAACATGAATATAAGAGTTCAACATTTGTCAGACGTACCTTTTTTTCAGTTGCATCAAGCATATTAATTCATACAGTTGCAACAAAATATATAGGGTCTAATTTATAGAGGAACACTAAGAAAATAAGAACCTTTAAATAAAGGAATATGTAACTTCAACTAGAAAATGAAGATCACTTTAAACTATCTGATAATTTTTCAGTTGCAACAAGCATTTTAATTCATACAGTTGCAAAAAAATACATAGGGTCTAATTTATAAAGGGACACTAAGACAATAAGAACCTTTAAAATAAAGGAATATGTAACTTCAACTAGAAAATGAAGATCACTTCAAACTATCTGATAATTTTTTTCTTTTAAAATAATGGTGGTGTCGGGGCCATTTTGCGCAATTCGACTATTCAGTTGGGTACCTGCTACCTCTAATCAACGGTACCGGAGTAACTTTGTCCACAAAGTCTTAAGCAGATGGGAAGAAATCAACTAGTGCCTATTATCTCTACTGAGATTTAAATCTGTTTCTAAGGTTTGCAGACACTTTGACCACTAGGCGGTACCCTTGGGTGCTAGTTGAATCTTTATCTCCTAGGAAATTAGATTAGACAAAAATCTAATTTAAAGCATGACGTCAAAGTGTTTCAGAGTATTGCTGCTATTCATAAAACGGGTTTACTTCTTTCTTACCTTCCTATTTTGTTAATAATGCTGACTTATGAATGGTAGAAAGTGTCTGGAAGTATTGAATTTGCTCATTCTGATTAAAGGCAATATACTGTCCTAGTGATACATAGGTAGTTTTTATTAGGCGGTATCAGCATTTTTTTATTTTTGGAAAGTAGTGCTTGTCTTTCTATGTTTCAATTCATTCAACAGTGCCTTTCCTATAGGCCAGGGGAGTGAAGCATCTAGATCCTACTACCAGGGCCAGAGGACTGATCCAAGGTTGGCATTAGAGAATCAAGGTGGCAAGAATCCTAGAGCACTGCCTCGTGAAGAAGGCATGGATATTGGTTATGAAGATAAGCCTGTACAGCAGACTTTGGAAGGTCTTGAAAAAAAATTCCTTGATGATATAATGAAACTGACCAAGGAGCAAAATGATGCAGAGGATGCTGAAAATTCTAGGCATAGGGAGGTTAGTTCAGCTTACTTAAGTGCTTTAATAACATAGTGGATTCTTCATTCATGTCAAGTTCTAAAGCTTTTCATTTAAAAGGGTAATGCCACACTATGCATTATCTACATCTTTTTTAGGATATACTAGTGCTTACATACATGGAGAGACCCCCTTCCCTTCCAAGTTCTTCTGCCCAACCTTTGATTTCTAAAAATATCCATAGCTGTCAAGCCCGTGCAATTGCATGATTCCAACTGAGAGACACAAATATTCCCTTAAAATCTTCATATTTATCAATACAGAGCATTCTTGCAATTCCTCACAACTTATCTTCTCTTCAAGTTTCTTGGAACAGAAAATCAATACCTTACCTTAATATTTTGTCCAACCATCTTTAGATTAATGAGCAGTATCTTCTATAGTAAAACAGATCAAAGTATGACGTAAAAATATATCAGATCAAAGCCTAGTAAACCTGTTAAAGTGCCATATCCAAGGGCCTGTAGCCAAAAATACTTTGGAAACTGTGCTTGTATGTGCCTGGTAAGGCTTTACTCCTTACCTCATATTATATTTGATTCAGTTTGCTTGGTTGTGGAGTTTGGATGCTTAGTTCACTTGGATAATCTTATTATTGGTCAATTAGTTGTACATCAAGCTTGGAGCTTGCATGAAGTTTGTGACAGAGTTGACAATACATCACAACTCCTCCATCAAAATATACCGTAACTTCTAGTCGTGTTTGCTTAATGATCTCATCATCTCAGTCATTGTGATTCATATGATTTGTATATTATGTGTAGTATCAAATATTTTATCTATCACTGGGCAAACAGTTCAGAGCAAGGAAAGGCTGGTGTTAGCAGCTGCATTCAAAACACGGCATTAGGGCTGTTTGATGTTGCTATTACTCATAAAGACAGATTGTTAATGGCAATGGTTAGAACATCTTCAGATGAGTAAACAATAAAATGTTTTACCTGTAGATGAGTGAACGTTTCCTATGGACATCGTTACTGGAGTTGTCTTCCCTCAATGATTTTGAGCAATGTCTCTGTGCCCTCTTCCAATATTTTGATCAACTTTATTAAGCTGAATTGACTTGATAGGAGACTTGTTGTAGCTACAAACTTTTGGAGGTGGCCAGCATGCCCTCAATGCCGAAGAATACAATCTTACCTGTTATAAAAAAATAATATTTGAATATACCAAGTAGTCTGCAATATATGAATAGGATCAAAGGTTAAGCTTGTACTTCCAAGTTTCAGAAAAATTTAGGTAGTTTAGACTGTTTCAGTGTTCCTTTTATAATCTGTTCCCCGTCTTGCTTATATAGTAGGTACTGAAACTTTTATCCATGTTCCTGGGCTGCTTTCTGGTGCCCACCCTGCGTGGGTAGATCAGCAGTGAATATTTATGAGTACAGGAGATTACTGGTTTGACAGAATCGAAATCTGTAACTTTCTTGTTACACAATGTCTGTCTTATCAAGAGAACTTGTATACCCAAAGGCTTATCTTCACATTTTCTACTTCCTAAATATATGTATGTAACTGATGAAGCTTGGGGGACTGGGGAGGTTGAATAAAAAATTTTGTGATAGATTTTGCTGATGTTTTATGCATACTCAGCTATTTTGCTAATTAGCGTGGGACCTTCTTTTCTCTTCATATGTTGTATTAAAATTTTTGAGCCTTTCTTCTCAGTGGAAATGCATAATCCTTATACTTCCTCCCTGTTTATGGTGCAAAATTTTAATGTTTCAGCCAGTATTTCGTACCAGTAAAGATCTAACTTTAAATCAACTTAGGATTAGGACATACGTACTTACTGGTCAAGCTTTAGTATAATTGTGAACCTGATCTAAGTTCTGCCATTCAAAAGCATAAGGTGGAATTAATGTCAAAACTGTTCATTCATAAATACAAATTAAAGTATTTATGCCAAAAATTATCAAGATGCTTAGATCCGAGCTAGTTTACAAGACTAGATACCATTCTCTACTTATATTTAAAGATAAGGGAAAAAATTAACAAGAATTGCTACTATGCATGTCTTGACAGGGATGGTGACTAAAAGTGTAGATAGATTTTTTTCTTGAGTTCATTATGTCTCTTTAAACTTCCTCCATCAGAACTTCTATAGCAGCAACCTAGGATGTATATTGAAGAGCAAGCAGCACCTTACTAGATGGTATGTAACCTCGATGGAGGTTGACTTTCATTCTCTTCAAGTTTGTCAAACAGGATTTAGCTGATATAGAAACATTAAGTTAGAAATACTTAGAAAAGAAGAAAATACACGTGTGTCTTTATCTTCTTTTCCTGTCAGTATAAGTTAAATGGTTATGATTTAGGTGAGTTATAGTGTATCTAAAGATGTGGTCCAGTGGTCAGTTAAGTGGGTTGAGAACCACAAGGTCTCAGTTTCAAATTTTAGTGGAGGCAACAACACTGATTTCATCCCATCTGTTCAAGCATTGGTTTACCTCTGCTAGTGGGAGGTAGCAGGTATTCCATGGAACTGATCCAGATATGCAAAATCTGACTCAGACAGCATGGTATGAAGAAAATGAACTAGGTGAATTACGGGTTATCCTCATAAGTCATCACTCATCACCATGCATGACATTCCTTTAAATACTTCTAAACCCTGGCCAGACATTTGTCTCCTTCAGAATTCTCAGTTTTGCGACGTTGTTCTACTTGGGATGTGGAGTTAAGTTACAGTTTTATGTTGAATTAAGTTCAAACTGATAGCAAAAGTTGATGGGGAATAATTGCATGCAAAAACATTTTTGTTCTGTGATAAATATTCTTTTCCCTAGAGCCACTTTTAAAATGACGGGATACTTTTTCTGGTGAAAAGTAAACTCAAATGGAGAACCTGATACTTTTTTTTGTGAAAAGTATACTCAAATAGAGAACCAAAACATTACGAGAAGTAGATAGATGAAAGTACAGAAGATCTTTCCAGACATGAAACTGAAAATCAGCATGGCACTCACTACATCTATGGCTTATATAAGAATGCTAAGATTCCCAGTTTATGATGCTTCTCCTTTACTTTGTATTCATGTCATGTAACTATGTTATATTATTGTAAAGAATCTTGATCTTGAAATATTAAGTAATATGACTAAGGCAGTCACACATATATGGACAATGCAGTGCAAATCTTGCAGGATTTTCATCCTAGAAGCTCTCAATGTTTCTGTATGTGACATTGTGTGTTAACAACCTTCTAGTGGTACAGAATTCTTGTTTCTATGAGAGTAACATTTTTTGCTTATATTTCAGCGGATAAATGCAATCAACACACAATATCAAGAACAGCTAGTTGCCCTTCGTGCCCGGCAAGCTAATCACAGAGATGAAGTCCTTCGAAGGGAGTGTCATGCCAGAAAACAACAGTATGAGCAAGTTGCTTTGGACAACTATCGACACAGCAACATGAGCACTAGCAATGCTCGTGGATATGTGGGAAACTCTCCAGCAGGAGAACGACAAGTTGCCTACAACTCTCCAGCAGGAGAACGACAAGCAGCCTATAATGCTGATAGTTACGACTCTTACAGGGAGAATGCTCGATATATTGGCAACAGCGGAAGAGATCACGGATATGAACCTAGAGTACAATACCCAGGCGGTCGCGTCTATGAAACTGGTTCACGCTATTATTGAATAACTGCTTAGAATAGTATTGAATCTTTCGTTTAGTTTGCTTTGACTAGGTGGTCGCGTCTATGACACTGGTTCACGCTACTCGTCTTTATAGCTTTTATCAGATTGGATAAAAGAGTCACATATGTACTTTACTTTTTTCTGAATGATTCATGATCTTGGCATGGACTAGTGATGAAGTTTGATCTGTTACTGTTCCTAAA</genome_strand>
        <mrna_strand>CAAAATTCTGTAAGGAAGAAAAAAATGAGACGTCCCGGCGGCGGACATTCCGGCGGTGGGCATTACGGTGGTGCTGATGCCGGCGCCGATGCTACGTATAACTCCGGCCATCAAACGATGCAACATCAACATCAACAGCAACAACAGCAGCAGATCAAGTCGGAACATCATCAACAATGGAGATGGGAACGAGAGAGCCCGAAATTACCTACAAATTCTATGTCTCCGAACATGTATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGGGGAGTGAAGCATCTAGATCCTACTACCAGGGCCAGAGGACTGATCCAAGGTTGGCATTAGAGAATCAAGGTGGCAAGAATCCTAGAGCACTGCCTCGTGAAGAAGGCATGGATATTGGTTATGAAGATAAGCCTGTACAGCAGACTTTGGAAGGTCTTGAAAAAAAATTCCTTGATGATATAATGAAACTGACCAAGGAGCAAAATGATGCAGAGGATGCTGAAAATTCTAGGCATAGGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATAAATGCAATCAACACACAATATCAAGAACAGCTAGTTGCCCTTCGTGCCCGGCAAGCTAATCACAGAGATGAAGTCCTTCGAAGGGAGTGTCATGCCAGAAAACTACAGTATGAGCAAGTTGCTTTGGACAACTATCGACACAGCAACATGAGCACTAGCAATGCTCGTGGATATGTGGGAAACTCTCCAGCAGGAGAACGACAAGTTGCCTACAACTCTCCAGCAGGAGAACGACAAGCAGCCTATAATGCTGATAGTTACGACTCTTACAGGGAGAATGCTCGATATATTGGCAACAGCGGAAGAGATCACGGATATGAACCTAGAGTACAATACCCAGGCGGTCGCGTCTATGAAACTGGTTCACGCTATTATTGAATAACTGCTTAGAATAGTATTGAATCTTTCGTTTAGTTTGCTTTGACTAGGTGGTCGCGTCTATGACACTGGTTCACGCTACTCGTCTTTATAGCTTTTATCAGATTGGATAAAAGAGTCACATATGTACTTTACTTTTTTCTGAATGATTCATGATCTTGGCATGGACTAGTGATGAAGTTTGATCTGTTACTGTTCCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>24</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6815" PGL_stop="10702"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6815" e_stop="7062"/>
            <exon e_start="8833" e_stop="9091"/>
            <exon e_start="10674" e_stop="10702"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.868" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6815" e_stop="7062" e_length="248"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.957">
            <gDNA_intron_boundary i_start="7063" i_stop="8832" i_length="1770"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8833" e_stop="9091" e_length="259"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.868">
            <gDNA_intron_boundary i_start="9092" i_stop="10673" i_length="1582"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10674" e_stop="10702" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6815" stop="7062"/>
              <exon start="8833" stop="9091"/>
              <exon start="10674" stop="10702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340936" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAATAGTAGAGCCAAAAAAAGTTTCAATTTACTTGAGATAAAGAAAGCATATATTCGATTATTAAAGTCAGAAGCAACAATGGGTCATCATCATCATCAGTTAACCGACCCACTTGTCACTCTTTGTACTAGTTGTAAAAGTTTCTTCTTTTTCTTGTCTTTTTCTTGCAGAATTTGTCAATGGAACCTTTGATCTTCAAAATTAGGCTTCTTATTCTTGCTTGGGTGCATTTCAGATCTCATTCAG : GTCCAATATCCTTGGTGAAACACTTCTCTAATAAAGATATAAAGAAAGCAACTGATGGTTTTAGGAGAATTGTTTACAACTCTTCCAAAATAGTTGCTTACAGAGCAAAGTTTCAAAATGGCCATGCTGCGTTTGTGAAAGAAGTCCGAGGTTTCGAAGATGAGGATGATACGGCCTTCTACAGGGAGGTACAGTTACTCGGTCGCTTGCATCATCGACATATTGCTGCACTTAATGGGTTCTCTTGCGGCCCTAAGAG : GTTCCTAGTCTTTGAAAATATGGAAAAAG</gDNA_template>
            <first_frame> L  I  V  E  P  K  K  V  S  I  Y  L  R  *  R  K  H  I  F  D  Y  *  S  Q  K  Q  Q  W  V  I  I  I  I  S  *  P  T  H  L  S  L  F  V  L  V  V  K  V  S  S  F  S  C  L  F  L  A  E  F  V  N  G  T  F  D  L  Q  N  *  A  S  Y  S  C  L  G  A  F  Q  I  S  F  R :   S  N  I  L  G  E  T  L  L  *  *  R  Y  K  E  S  N  *  W  F  *  E  N  C  L  Q  L  F  Q  N  S  C  L  Q  S  K  V  S  K  W  P  C  C  V  C  E  R  S  P  R  F  R  R  *  G  *  Y  G  L  L  Q  G  G  T  V  T  R  S  L  A  S  S  T  Y  C  C  T  *  W  V  L  L  R  P  *  E  :  V  P  S  L  *  K  Y  G  K   </first_frame>
            <second_frame>  *  *  *  S  Q  K  K  F  Q  F  T  *  D  K  E  S  I  Y  S  I  I  K  V  R  S  N  N  G  S  S  S  S  S  V  N  R  P  T  C  H  S  L  Y  *  L  *  K  F  L  L  F  L  V  F  F  L  Q  N  L  S  M  E  P  L  I  F  K  I  R  L  L  I  L  A  W  V  H  F  R  S  H  S   : G  P  I  S  L  V  K  H  F  S  N  K  D  I  K  K  A  T  D  G  F  R  R  I  V  Y  N  S  S  K  I  V  A  Y  R  A  K  F  Q  N  G  H  A  A  F  V  K  E  V  R  G  F  E  D  E  D  D  T  A  F  Y  R  E  V  Q  L  L  G  R  L  H  H  R  H  I  A  A  L  N  G  F  S  C  G  P  K  R :   F  L  V  F  E  N  M  E  K  </second_frame>
            <third_frame>   N  S  R  A  K  K  S  F  N  L  L  E  I  K  K  A  Y  I  R  L  L  K  S  E  A  T  M  G  H  H  H  H  Q  L  T  D  P  L  V  T  L  C  T  S  C  K  S  F  F  F  F  L  S  F  S  C  R  I  C  Q  W  N  L  *  S  S  K  L  G  F  L  F  L  L  G  C  I  S  D  L  I  Q  :  V  Q  Y  P  W  *  N  T  S  L  I  K  I  *  R  K  Q  L  M  V  L  G  E  L  F  T  T  L  P  K  *  L  L  T  E  Q  S  F  K  M  A  M  L  R  L  *  K  K  S  E  V  S  K  M  R  M  I  R  P  S  T  G  R  Y  S  Y  S  V  A  C  I  I  D  I  L  L  H  L  M  G  S  L  A  A  L  R   : G  S  *  S  L  K  I  W  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6954" stop="7062"/>
                    <exon start="8833" stop="9091"/>
                    <exon start="10674" stop="10701"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFLLFLVFFLQNLSMEPLIFKIRLLILAWVHFRSHSGPISLVKHFSNKDIKKATDGFRRIVYNSSKIVAYRAKFQNGHAAFVKEVRGFEDEDDTAFYREVQLLGRLHHRHIAALNGFSCGPKRFLVFENMEK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="10715" PGL_stop="11998"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10715" e_stop="10726"/>
            <exon e_start="10825" e_stop="10892"/>
            <exon e_start="11141" e_stop="11230"/>
            <exon e_start="11353" e_stop="11422"/>
            <exon e_start="11507" e_stop="11998"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10715" e_stop="10726" e_length="12"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="10727" i_stop="10824" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10825" e_stop="10892" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.910" acc_prob="0.981">
            <gDNA_intron_boundary i_start="10893" i_stop="11140" i_length="248"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11141" e_stop="11230" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.799" acc_prob="0.953">
            <gDNA_intron_boundary i_start="11231" i_stop="11352" i_length="122"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11353" e_stop="11422" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.987">
            <gDNA_intron_boundary i_start="11423" i_stop="11506" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="11507" e_stop="11998" e_length="492"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10715" stop="10726"/>
              <exon start="10825" stop="10892"/>
              <exon start="11141" stop="11230"/>
              <exon start="11353" stop="11422"/>
              <exon start="11507" stop="11998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332249" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACACCTTTCTG : ACCCTCTGATGACTCCACTAAACTGGAGAATAAGACTGCAGATAGCAGTTGGCATCGCTGCTGCTTTA : GAATATCTCCACTTCTTTTGTGATCCGCCGATGTACCACGTTTCAGTCAGTTCAAGTACCATCATGCTGGACGAGAACTTCACAGCTAAA : CTCTGTGATGTTAGCCTCCTTTGTTCTGTCGAGAACAACAATCCACTTCCGAAGTCTAAATGCTCCAAAG : AATGTGGTAATGAGATCTGCAAACAGACAATCTTCCAGCTTGGTTTGCTGATCCTCGAGTTAGTCACCGGTCAATCCTCAGAAGAAGGAGGTGTTGACTTAGTTCAATGGGTTCAAGATTCTCGCTTCCGAAGAAGATCCATTCACCAGATGATTGATCCTGATCTCGGAGACAGCTACGATTTCAAAGAGCTTAAAGGTCTTTTGGCAGTTGCAAAAATGTGTGTACAATCTATCCATAAGCCTACAATAAAGACCCCTCAAATATTGTGGTATCTCCAAAAGAAACTGGGCAGGACTCCAGTAGTTTGCTGATGACTTGAGTCATGTCATGTTCACAGATATAGATCATAGATTGTGTGAGTAGACATTTTTTTTGTAAAGCTATGTTACTCGGACTCTTCAAATCGAAGAGTCCACACAACTTAGTCTGTAAGTAGTCTGCTGCGTTTTGACATTGATTATGAAATTAGACCTCTTCATAAAAACAAGA</gDNA_template>
            <first_frame> N  T  F  L  :  T  L  *  *  L  H  *  T  G  E  *  D  C  R  *  Q  L  A  S  L  L  L  * :   N  I  S  T  S  F  V  I  R  R  C  T  T  F  Q  S  V  Q  V  P  S  C  W  T  R  T  S  Q  L  N :   S  V  M  L  A  S  F  V  L  S  R  T  T  I  H  F  R  S  L  N  A  P  K  :  N  V  V  M  R  S  A  N  R  Q  S  S  S  L  V  C  *  S  S  S  *  S  P  V  N  P  Q  K  K  E  V  L  T  *  F  N  G  F  K  I  L  A  S  E  E  D  P  F  T  R  *  L  I  L  I  S  E  T  A  T  I  S  K  S  L  K  V  F  W  Q  L  Q  K  C  V  Y  N  L  S  I  S  L  Q  *  R  P  L  K  Y  C  G  I  S  K  R  N  W  A  G  L  Q  *  F  A  D  D  L  S  H  V  M  F  T  D  I  D  H  R  L  C  E  *  T  F  F  L  *  S  Y  V  T  R  T  L  Q  I  E  E  S  T  Q  L  S  L  *  V  V  C  C  V  L  T  L  I  M  K  L  D  L  F  I  K  T  R </first_frame>
            <second_frame>  T  P  F  * :   P  S  D  D  S  T  K  L  E  N  K  T  A  D  S  S  W  H  R  C  C  F   : R  I  S  P  L  L  L  *  S  A  D  V  P  R  F  S  Q  F  K  Y  H  H  A  G  R  E  L  H  S  *   : T  L  *  C  *  P  P  L  F  C  R  E  Q  Q  S  T  S  E  V  *  M  L  Q  R :   M  W  *  *  D  L  Q  T  D  N  L  P  A  W  F  A  D  P  R  V  S  H  R  S  I  L  R  R  R  R  C  *  L  S  S  M  G  S  R  F  S  L  P  K  K  I  H  S  P  D  D  *  S  *  S  R  R  Q  L  R  F  Q  R  A  *  R  S  F  G  S  C  K  N  V  C  T  I  Y  P  *  A  Y  N  K  D  P  S  N  I  V  V  S  P  K  E  T  G  Q  D  S  S  S  L  L  M  T  *  V  M  S  C  S  Q  I  *  I  I  D  C  V  S  R  H  F  F  C  K  A  M  L  L  G  L  F  K  S  K  S  P  H  N  L  V  C  K  *  S  A  A  F  *  H  *  L  *  N  *  T  S  S  *  K  Q   </second_frame>
            <third_frame>   H  L  S   : D  P  L  M  T  P  L  N  W  R  I  R  L  Q  I  A  V  G  I  A  A  A  L  :  E  Y  L  H  F  F  C  D  P  P  M  Y  H  V  S  V  S  S  S  T  I  M  L  D  E  N  F  T  A  K  :  L  C  D  V  S  L  L  C  S  V  E  N  N  N  P  L  P  K  S  K  C  S  K   : E  C  G  N  E  I  C  K  Q  T  I  F  Q  L  G  L  L  I  L  E  L  V  T  G  Q  S  S  E  E  G  G  V  D  L  V  Q  W  V  Q  D  S  R  F  R  R  R  S  I  H  Q  M  I  D  P  D  L  G  D  S  Y  D  F  K  E  L  K  G  L  L  A  V  A  K  M  C  V  Q  S  I  H  K  P  T  I  K  T  P  Q  I  L  W  Y  L  Q  K  K  L  G  R  T  P  V  V  C  *  *  L  E  S  C  H  V  H  R  Y  R  S  *  I  V  *  V  D  I  F  F  V  K  L  C  Y  S  D  S  S  N  R  R  V  H  T  T  *  S  V  S  S  L  L  R  F  D  I  D  Y  E  I  R  P  L  H  K  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10717" stop="10726"/>
                    <exon start="10825" stop="10892"/>
                    <exon start="11141" stop="11230"/>
                    <exon start="11353" stop="11422"/>
                    <exon start="11507" stop="11820"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLSDPLMTPLNWRIRLQIAVGIAAALEYLHFFCDPPMYHVSVSSSTIMLDENFTAKLCDVSLLCSVENNNPLPKSKCSKECGNEICKQTIFQLGLLILELVTGQSSEEGGVDLVQWVQDSRFRRRSIHQMIDPDLGDSYDFKELKGLLAVAKMCVQSIHKPTIKTPQILWYLQKKLGRTPVVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="15586" PGL_stop="12272"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15586" e_stop="15268"/>
            <exon e_start="14321" e_stop="14156"/>
            <exon e_start="13827" e_stop="13689"/>
            <exon e_start="13493" e_stop="13217"/>
            <exon e_start="13048" e_stop="12850"/>
            <exon e_start="12735" e_stop="12272"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.975"/>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.832" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.944" e_score="0.990"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="15586" e_stop="15268" e_length="319"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="15267" i_stop="14322" i_length="946"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14321" e_stop="14156" e_length="166"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14155" i_stop="13828" i_length="328"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13827" e_stop="13689" e_length="139"/>
          </exon>
          <intron i_serial="3" don_prob="0.832" acc_prob="0.996">
            <gDNA_intron_boundary i_start="13688" i_stop="13494" i_length="195"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13493" e_stop="13217" e_length="277"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.968">
            <gDNA_intron_boundary i_start="13216" i_stop="13049" i_length="168"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="13048" e_stop="12850" e_length="199"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.944">
            <gDNA_intron_boundary i_start="12849" i_stop="12736" i_length="114"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="12735" e_stop="12272" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15586" stop="15268"/>
              <exon start="14321" stop="14156"/>
              <exon start="13827" stop="13689"/>
              <exon start="13493" stop="13217"/>
              <exon start="13048" stop="12850"/>
              <exon start="12735" stop="12272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12990" stop="12850"/>
              <exon start="12735" stop="12272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316461" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAAAGAGAATTCTAGAGCATTCTCCACTATTCTCAATTTCTCATTTCACCTGAGCCTTCAAAGATGTGTATATATACACCCCTTTTGAGTCCTTGTTGGAGTCAAGTATTTGGGTGTTCTGTTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAG : TTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAG : GTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGG : CAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCG : CCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG : ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</gDNA_template>
            <first_frame> K  K  E  N  S  R  A  F  S  T  I  L  N  F  S  F  H  L  S  L  Q  R  C  V  Y  I  H  P  F  *  V  L  V  G  V  K  Y  L  G  V  L  F  F  S  Y  C  S  *  K  E  V  E  I  E  K  D  V  W  K  R  R  E  K  K  E  *  *  H  K  V  L  *  N  L  G  C  F  Q  E  C  F  R  R  *  N  Q  E  S  L  *  K  S  C  Y  E  E  S  P  *  *  G  W  *  S  *  K   : V  *  G  A  S  S  S  L  *  G  L  E  *  L  T  E  A  *  D  L  *  S  V  W  R  R  S  T  E  R  R  N  G  W  W  W  W  H  T  *  S  I  *  P  L  *  F  L  L  *  W  K  S  F  W  R :   W  W  S  *  R  T  K  R  E  E  G  *  R  C  S  A  S  I  E  G  V  A  *  G  P  I  Q  W  D  D  Q  E  T  I  A  F  A  Q  C  Y  L  L  E  V  *  W  :  Q  G  V  E  V  W  *  I  N  E  V  F  W  L  *  R  Y  W  Y  E  G  F  N  Q  T  A  W  A  W  N  D  P  A  N  A  A  A  L  *  *  M  Q  G  Y  W  R  D  N  *  R  *  G  S  L  S  S  M  Q  R  *  K  S  G  T  R  E  E  S  H  *  S  P  C  *  K  R  N  A  K  W  T  E  N  Y  I  P  W  R  G  *  *  S   : A  *  Y  S  Y  W  R  C  G  F  R  S  P  T  E  R  S  P  E  V  Q  E  E  G  *  *  P  V  C  *  S  H  I  D  L  N  *  G  T  V  W  F  P  V  H  I  G  T  L  G  W  Q  T  A  P  R  K  V  K  P  W  R  S  C  *  T  * :   S  I  Q  G  Y  Q  *  *  R  N  A  S  L  P  E  A  I  H  E  G  *  T  V  H  S  F  H  R  G  I  P  G  F  V  E  P  A  T  G  A  A  S  G  G  N  V  T  I  K  A  Y  I  T  V  L  *  H  G  T  G  *  M  *  G  D  H  I  A  *  C  E  Y  G  G  R  N  E  K  E  T  S  C  T  T  R  S  I  *  *  G  *  R  D  V  W  W  W  R  T  E  S  T  V  C  S  T  V  D  V  E  R  F  T  S  L  N  F  A  Y  S  L  V  W  F  T  V  F  C  C  F  G  N  D  M  F  W  E  V  K  K  L  M  L  *  *  N  R  N  I  I  F  L  G  N  </first_frame>
            <second_frame>  R  K  R  I  L  E  H  S  P  L  F  S  I  S  H  F  T  *  A  F  K  D  V  Y  I  Y  T  P  F  E  S  L  L  E  S  S  I  W  V  F  C  S  F  H  T  V  L  E  K  K  L  K  L  K  R  M  F  G  R  G  G  K  K  K  S  D  N  T  K  F  Y  E  I  L  G  V  S  K  N  A  S  E  D  E  I  K  K  A  Y  R  K  A  A  M  K  N  H  P  D  K  G  G  D  P  E  K  :  F  K  E  L  A  Q  A  Y  E  V  L  S  D  S  Q  K  R  E  I  Y  D  Q  Y  G  E  E  A  L  K  E  G  M  G  G  G  G  G  T  H  D  P  F  D  L  F  N  S  F  F  S  G  S  P  F  G   : G  G  G  R  R  G  Q  R  E  R  R  G  D  D  V  V  H  P  L  K  V  S  L  E  D  L  Y  N  G  M  T  K  K  L  S  L  S  R  N  V  I  C  S  K  C  S  G :   K  G  S  K  S  G  E  S  M  K  C  S  G  C  E  G  T  G  M  K  V  S  I  R  Q  L  G  P  G  M  I  Q  Q  M  Q  Q  P  C  N  K  C  K  G  T  G  E  T  I  D  D  K  D  R  C  P  Q  C  K  G  K  K  V  V  P  E  K  K  V  I  E  V  H  V  E  K  G  M  Q  N  G  Q  K  I  T  F  P  G  E  A  D  E  A  :  P  D  T  V  T  G  D  V  V  F  V  L  Q  Q  K  D  H  P  K  F  K  R  K  G  D  D  L  F  V  D  H  T  L  T  L  T  E  A  L  C  G  F  Q  F  I  L  A  H  L  D  G  R  R  L  L  V  K  S  N  P  G  E  V  V  K  P   : D  Q  F  K  A  I  N  D  E  G  M  P  V  Y  Q  R  P  F  M  K  G  K  L  Y  I  H  F  I  V  E  F  P  D  S  L  S  L  P  Q  V  Q  L  L  E  A  M  L  P  S  R  P  T  S  Q  Y  S  D  M  E  L  D  E  C  E  E  T  T  L  H  D  V  N  M  E  E  E  M  R  R  K  Q  A  A  Q  Q  E  A  Y  D  E  D  E  E  M  S  G  G  G  G  Q  R  V  Q  C  A  Q  Q  *  M  *  K  D  L  P  V  *  T  L  L  I  V  *  F  G  L  L  F  S  V  V  L  E  M  T  C  F  G  K  S  K  N  *  C  F  S  E  I  E  I  L  F  S  W  G  T </second_frame>
            <third_frame>   E  R  E  F  *  S  I  L  H  Y  S  Q  F  L  I  S  P  E  P  S  K  M  C  I  Y  T  P  L  L  S  P  C  W  S  Q  V  F  G  C  S  V  L  F  I  L  F  L  K  R  S  *  N  *  K  G  C  L  E  E  E  G  K  K  R  V  I  T  Q  S  F  M  K  S  W  V  F  P  R  M  L  Q  K  M  K  S  R  K  L  I  E  K  L  L  *  R  I  T  L  I  R  V  V  I  L  K  S :   L  R  S  *  L  K  L  M  R  S  *  V  T  H  R  S  V  R  F  M  I  S  M  E  K  K  H  *  K  K  E  W  V  V  V  V  A  H  M  I  H  L  T  S  L  I  P  S  L  V  E  V  L  L  E  :  V  V  V  V  E  D  K  E  R  G  G  V  T  M  *  C  I  H  *  R  C  R  L  R  T  Y  T  M  G  *  P  R  N  Y  R  F  R  A  M  L  F  A  R  S  V  V   : A  R  G  R  S  L  V  N  Q  *  S  V  L  V  V  K  V  L  V  *  R  F  Q  S  D  S  L  G  L  E  *  S  S  K  C  S  S  L  V  I  N  A  R  V  L  E  R  Q  L  T  I  R  I  V  V  L  N  A  K  V  K  K  W  Y  Q  R  R  K  S  L  K  S  M  L  K  K  E  C  K  M  D  R  K  L  H  S  L  A  R  L  M  K  R :   L  I  Q  L  L  E  M  W  F  S  F  S  N  R  K  I  T  R  S  S  R  G  R  V  M  T  C  L  L  I  T  H  *  P  *  L  R  H  C  V  V  S  S  S  Y  W  H  T  W  M  A  D  G  S  S  *  S  Q  T  L  E  K  L  L  N  L  :  I  N  S  R  L  S  M  M  K  E  C  Q  F  T  R  G  H  S  *  R  V  N  C  T  F  I  S  S  W  N  S  R  I  R  *  A  C  H  R  C  S  F  W  R  Q  C  Y  H  Q  G  L  H  H  S  T  L  T  W  N  W  M  N  V  R  R  P  H  C  M  M  *  I  W  R  K  K  *  E  G  N  K  L  H  N  K  K  H  M  M  R  M  K  R  C  L  V  V  E  D  R  E  Y  S  V  L  N  S  R  C  R  K  I  Y  Q  F  E  L  C  L  *  F  S  L  V  Y  C  F  L  L  F  W  K  *  H  V  L  G  S  Q  K  T  D  A  L  V  K  *  K  Y  Y  F  L  G  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15531" stop="15268"/>
                    <exon start="14321" stop="14156"/>
                    <exon start="13827" stop="13689"/>
                    <exon start="13493" stop="13217"/>
                    <exon start="13048" stop="12850"/>
                    <exon start="12735" stop="12413"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1365</number_coding_nucleotides>
                  <number_encoded_amino_acids>455</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFKDVYIYTPFESLLESSIWVFCSFHTVLEKKLKLKRMFGRGGKKKSDNTKFYEILGVSKNASEDEIKKAYRKAAMKNHPDKGGDPEKFKELAQAYEVLSDSQKREIYDQYGEEALKEGMGGGGGTHDPFDLFNSFFSGSPFGGGGRRGQRERRGDDVVHPLKVSLEDLYNGMTKKLSLSRNVICSKCSGKGSKSGESMKCSGCEGTGMKVSIRQLGPGMIQQMQQPCNKCKGTGETIDDKDRCPQCKGKKVVPEKKVIEVHVEKGMQNGQKITFPGEADEAPDTVTGDVVFVLQQKDHPKFKRKGDDLFVDHTLTLTEALCGFQFILAHLDGRRLLVKSNPGEVVKPDQFKAINDEGMPVYQRPFMKGKLYIHFIVEFPDSLSLPQVQLLEAMLPSRPTSQYSDMELDECEETTLHDVNMEEEMRRKQAAQQEAYDEDEEMSGGGGQRVQCAQQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="24239" PGL_stop="27776"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24239" e_stop="24283"/>
            <exon e_start="24867" e_stop="24980"/>
            <exon e_start="26166" e_stop="26688"/>
            <exon e_start="27245" e_stop="27776"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="0.978"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="0.943"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="24239" e_stop="24283" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="24284" i_stop="24866" i_length="583"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24867" e_stop="24980" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="24981" i_stop="26165" i_length="1185"/>
          </intron>
          <exon e_serial="3" e_score="0.943">
            <gDNA_exon_boundary e_start="26166" e_stop="26688" e_length="523"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="26689" i_stop="27244" i_length="556"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="27245" e_stop="27776" e_length="532"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24239" stop="24283"/>
              <exon start="24867" stop="24980"/>
              <exon start="26166" stop="26688"/>
              <exon start="27245" stop="27776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324122" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGAACAACAATTAGAACATGACGCTCGTGTACGAGAGATCGAA : GAGGGCTGGTGTGACAGTGTTGGATCTGTTGAGCAAATTCAAGAAAAGTTGCTAAAGAGACAAGAGGCAGCTGCTAAGCGTGAAAGAGCAATGGCCTATGCTTTAGCTCACCAG : TGGCAGGCAGGATCCAGGCAGCAGGCTACACTTTCTGGGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTAGAGAGATGGATGGCAGTACGCCCATGGGAAAATCGTTTTCTAGACCTTAATGTCAGAGATGGAGTCATGCCTAATGAAAATGAATCAGCCGAACCTGTAAACGGGATGAAGAACCAGGTAAAAGTTGCTGGGAAGAAACCAGCAACTACAACTCTTTCAAATGATAGAGTGGGTCCATCTCATTCAAGCAGTAACTCAAAATCAAATGAAAAGGCAGCAGCATCGCTCTCTGATGGTTGCAGTTCTTCCCCAAATGTGTCAGCAAGCACACAAGAAACACCTGCAGCATTAGTTAACAAACCTAAGTCCAAACCAAATCGTGAAGATTTAGTTGAGGAAGCTAGTTCAAAACCCGTCCTTGGTTCTAGATCACACAGCAATCCTAAGGAGAGATCTACTCCCTCTGATAAACAAGGAAAACAGAGATTGTCTCTGCCTGGTAGCG : GTCTTGCACCTCAAACAGCGAGACAACCAAGCAGAACCATCAAAAGGACATCTAGTACGCAGAAGCCTTTGAAGGAGAAGTCCAAATTAAACGAAACTGATACCAAGTCTACAGCAACTGTTTCACAACAGGCTGCTGATTAGTTTTTAGGTACTCGTTGAAGATCCCGATCTCAGAACCAAGTGTCACCCTTGCTTGTAAATACAGGGAACCTTCTTAAAGGGGAGTGATGGTATGTTGTCCACGGCAGAGTTAAAAGGAGATAGGCTTGCTGCCATCTCCTGAATAACATCTTCGCATTTGTTTCAATTCTTGTCATAATTCGTGTAATTTATATAATAGCGCGTTGTTTTCTTTACCCCTCCTCCCTCCCAGTGTAAAAAAGAGGATGAATTTGCTTTTTGTGCCACTTTTCTTGAGCTGAAAACTGGGGAATTTGGTGAGTTTGATTGCCAATTTCTTTGTTGTGTGTTGTACAAGATCTGAATGTAGGATTCATTCATTAATCTAGAGATTGTAGACCATATTGTGC</gDNA_template>
            <first_frame> V  E  Q  Q  L  E  H  D  A  R  V  R  E  I  E  :  E  G  W  C  D  S  V  G  S  V  E  Q  I  Q  E  K  L  L  K  R  Q  E  A  A  A  K  R  E  R  A  M  A  Y  A  L  A  H  Q  :  W  Q  A  G  S  R  Q  Q  A  T  L  S  G  F  E  P  D  K  S  S  W  G  W  N  W  L  E  R  W  M  A  V  R  P  W  E  N  R  F  L  D  L  N  V  R  D  G  V  M  P  N  E  N  E  S  A  E  P  V  N  G  M  K  N  Q  V  K  V  A  G  K  K  P  A  T  T  T  L  S  N  D  R  V  G  P  S  H  S  S  S  N  S  K  S  N  E  K  A  A  A  S  L  S  D  G  C  S  S  S  P  N  V  S  A  S  T  Q  E  T  P  A  A  L  V  N  K  P  K  S  K  P  N  R  E  D  L  V  E  E  A  S  S  K  P  V  L  G  S  R  S  H  S  N  P  K  E  R  S  T  P  S  D  K  Q  G  K  Q  R  L  S  L  P  G  S   : G  L  A  P  Q  T  A  R  Q  P  S  R  T  I  K  R  T  S  S  T  Q  K  P  L  K  E  K  S  K  L  N  E  T  D  T  K  S  T  A  T  V  S  Q  Q  A  A  D  *  F  L  G  T  R  *  R  S  R  S  Q  N  Q  V  S  P  L  L  V  N  T  G  N  L  L  K  G  E  *  W  Y  V  V  H  G  R  V  K  R  R  *  A  C  C  H  L  L  N  N  I  F  A  F  V  S  I  L  V  I  I  R  V  I  Y  I  I  A  R  C  F  L  Y  P  S  S  L  P  V  *  K  R  G  *  I  C  F  L  C  H  F  S  *  A  E  N  W  G  I  W  *  V  *  L  P  I  S  L  L  C  V  V  Q  D  L  N  V  G  F  I  H  *  S  R  D  C  R  P  Y  C   </first_frame>
            <second_frame>  L  N  N  N  *  N  M  T  L  V  Y  E  R  S  K :   R  A  G  V  T  V  L  D  L  L  S  K  F  K  K  S  C  *  R  D  K  R  Q  L  L  S  V  K  E  Q  W  P  M  L  *  L  T  S :   G  R  Q  D  P  G  S  R  L  H  F  L  G  L  N  Q  I  K  A  A  G  V  G  T  G  *  R  D  G  W  Q  Y  A  H  G  K  I  V  F  *  T  L  M  S  E  M  E  S  C  L  M  K  M  N  Q  P  N  L  *  T  G  *  R  T  R  *  K  L  L  G  R  N  Q  Q  L  Q  L  F  Q  M  I  E  W  V  H  L  I  Q  A  V  T  Q  N  Q  M  K  R  Q  Q  H  R  S  L  M  V  A  V  L  P  Q  M  C  Q  Q  A  H  K  K  H  L  Q  H  *  L  T  N  L  S  P  N  Q  I  V  K  I  *  L  R  K  L  V  Q  N  P  S  L  V  L  D  H  T  A  I  L  R  R  D  L  L  P  L  I  N  K  E  N  R  D  C  L  C  L  V  A  :  V  L  H  L  K  Q  R  D  N  Q  A  E  P  S  K  G  H  L  V  R  R  S  L  *  R  R  S  P  N  *  T  K  L  I  P  S  L  Q  Q  L  F  H  N  R  L  L  I  S  F  *  V  L  V  E  D  P  D  L  R  T  K  C  H  P  C  L  *  I  Q  G  T  F  L  K  G  S  D  G  M  L  S  T  A  E  L  K  G  D  R  L  A  A  I  S  *  I  T  S  S  H  L  F  Q  F  L  S  *  F  V  *  F  I  *  *  R  V  V  F  F  T  P  P  P  S  Q  C  K  K  E  D  E  F  A  F  C  A  T  F  L  E  L  K  T  G  E  F  G  E  F  D  C  Q  F  L  C  C  V  L  Y  K  I  *  M  *  D  S  F  I  N  L  E  I  V  D  H  I  V  </second_frame>
            <third_frame>   *  T  T  I  R  T  *  R  S  C  T  R  D  R   : R  G  L  V  *  Q  C  W  I  C  *  A  N  S  R  K  V  A  K  E  T  R  G  S  C  *  A  *  K  S  N  G  L  C  F  S  S  P   : V  A  G  R  I  Q  A  A  G  Y  T  F  W  V  *  T  R  *  K  Q  L  G  L  E  L  V  R  E  M  D  G  S  T  P  M  G  K  S  F  S  R  P  *  C  Q  R  W  S  H  A  *  *  K  *  I  S  R  T  C  K  R  D  E  E  P  G  K  S  C  W  E  E  T  S  N  Y  N  S  F  K  *  *  S  G  S  I  S  F  K  Q  *  L  K  I  K  *  K  G  S  S  I  A  L  *  W  L  Q  F  F  P  K  C  V  S  K  H  T  R  N  T  C  S  I  S  *  Q  T  *  V  Q  T  K  S  *  R  F  S  *  G  S  *  F  K  T  R  P  W  F  *  I  T  Q  Q  S  *  G  E  I  Y  S  L  *  *  T  R  K  T  E  I  V  S  A  W  *  R :   S  C  T  S  N  S  E  T  T  K  Q  N  H  Q  K  D  I  *  Y  A  E  A  F  E  G  E  V  Q  I  K  R  N  *  Y  Q  V  Y  S  N  C  F  T  T  G  C  *  L  V  F  R  Y  S  L  K  I  P  I  S  E  P  S  V  T  L  A  C  K  Y  R  E  P  S  *  R  G  V  M  V  C  C  P  R  Q  S  *  K  E  I  G  L  L  P  S  P  E  *  H  L  R  I  C  F  N  S  C  H  N  S  C  N  L  Y  N  S  A  L  F  S  L  P  L  L  P  P  S  V  K  K  R  M  N  L  L  F  V  P  L  F  L  S  *  K  L  G  N  L  V  S  L  I  A  N  F  F  V  V  C  C  T  R  S  E  C  R  I  H  S  L  I  *  R  L  *  T  I  L  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24239" stop="24283"/>
                    <exon start="24867" stop="24980"/>
                    <exon start="26166" stop="26688"/>
                    <exon start="27245" stop="27387"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEQQLEHDARVREIEEGWCDSVGSVEQIQEKLLKRQEAAAKRERAMAYALAHQWQAGSRQQATLSGFEPDKSSWGWNWLERWMAVRPWENRFLDLNVRDGVMPNENESAEPVNGMKNQVKVAGKKPATTTLSNDRVGPSHSSSNSKSNEKAAASLSDGCSSSPNVSASTQETPAALVNKPKSKPNREDLVEEASSKPVLGSRSHSNPKERSTPSDKQGKQRLSLPGSGLAPQTARQPSRTIKRTSSTQKPLKEKSKLNETDTKSTATVSQQAAD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25548" e_stop="26091"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="25548" e_stop="26091" e_length="544"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25548" stop="26091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346081" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACTTGGGTCTTTTCTCTTCATTTTTTTTATATGCTATGTGTGTACTCAAGGACACATGGTGCCTCTAGTCAGAAATCAGGAACAACTATGGAAGAATAAAAATAGCTGTCAATACTGTGGTATCATTTTATGATACTGGTTAGGCAGGACATGGTGAGCCTTTAGCTTACTTAGGATATGACCTTAGATTGGAGGGTGTGGAGGTAAAAAATTCGGGTAGAAGGATAGTAGTAAATAGTTTCGCATCTTTTCCTCTCCTGATAGTATTATTATTATGATTTTTCAGTATTTATTATTGTTTTTCTATTTCCATATTTCTCATTCTTAGTTTTCTATAACTACTTGTCTCGTATGCCTCTATTTTCTTACTAGCTTGCAGTTGTTACTGCTTGTCTTCATAAATGTTGTGTTTTTGCTTTCCTTGAGCCAAGGGTCTATTGGAAGCAGCCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGACACTACCCTCCTCAGATCCCACACTTGGGTAAGTTGGTGTTGGTGTTGTTTGTTGGTTT</gDNA_template>
            <first_frame> L  L  G  S  F  L  F  I  F  F  I  C  Y  V  C  T  Q  G  H  M  V  P  L  V  R  N  Q  E  Q  L  W  K  N  K  N  S  C  Q  Y  C  G  I  I  L  *  Y  W  L  G  R  T  W  *  A  F  S  L  L  R  I  *  P  *  I  G  G  C  G  G  K  K  F  G  *  K  D  S  S  K  *  F  R  I  F  S  S  P  D  S  I  I  I  M  I  F  Q  Y  L  L  L  F  F  Y  F  H  I  S  H  S  *  F  S  I  T  T  C  L  V  C  L  Y  F  L  T  S  L  Q  L  L  L  L  V  F  I  N  V  V  F  L  L  S  L  S  Q  G  S  I  G  S  S  L  S  T  C  Q  G  R  G  K  V  C  D  T  T  L  L  R  S  H  T  W  V  S  W  C  W  C  C  L  L  V  </first_frame>
            <second_frame>  Y  L  G  L  F  S  S  F  F  L  Y  A  M  C  V  L  K  D  T  W  C  L  *  S  E  I  R  N  N  Y  G  R  I  K  I  A  V  N  T  V  V  S  F  Y  D  T  G  *  A  G  H  G  E  P  L  A  Y  L  G  Y  D  L  R  L  E  G  V  E  V  K  N  S  G  R  R  I  V  V  N  S  F  A  S  F  P  L  L  I  V  L  L  L  *  F  F  S  I  Y  Y  C  F  S  I  S  I  F  L  I  L  S  F  L  *  L  L  V  S  Y  A  S  I  F  L  L  A  C  S  C  Y  C  L  S  S  *  M  L  C  F  C  F  P  *  A  K  G  L  L  E  A  A  S  L  P  A  K  V  G  V  R  S  V  T  L  P  S  S  D  P  T  L  G  *  V  G  V  G  V  V  C  W  F </second_frame>
            <third_frame>   T  W  V  F  S  L  H  F  F  Y  M  L  C  V  Y  S  R  T  H  G  A  S  S  Q  K  S  G  T  T  M  E  E  *  K  *  L  S  I  L  W  Y  H  F  M  I  L  V  R  Q  D  M  V  S  L  *  L  T  *  D  M  T  L  D  W  R  V  W  R  *  K  I  R  V  E  G  *  *  *  I  V  S  H  L  F  L  S  *  *  Y  Y  Y  Y  D  F  S  V  F  I  I  V  F  L  F  P  Y  F  S  F  L  V  F  Y  N  Y  L  S  R  M  P  L  F  S  Y  *  L  A  V  V  T  A  C  L  H  K  C  C  V  F  A  F  L  E  P  R  V  Y  W  K  Q  P  L  Y  L  P  R  *  G  *  G  L  *  H  Y  P  P  Q  I  P  H  L  G  K  L  V  L  V  L  F  V  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25878" stop="26090"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSITTCLVCLYFLTSLQLLLLVFINVVFLLSLSQGSIGSSLSTCQGRGKVCDTTLLRSHTWVSWCWCCLLV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="30490" PGL_stop="33462"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30490" e_stop="31646"/>
            <exon e_start="32841" e_stop="33462"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.997"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="30490" e_stop="31646" e_length="1157"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="31647" i_stop="32840" i_length="1194"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="32841" e_stop="33462" e_length="622"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30490" stop="31192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31161" stop="31646"/>
              <exon start="32841" stop="32959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32952" stop="33462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328096" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTGTTGCTTCACTTCTTTCACTTCAATCTTTCTCCATTAATGGTGATTTTGCTGTAACAAGAAAATATGTTCAGATTATCTGTAGTTATCCCTTTTCTTACTCTTCTCATTTCTGTTCTTATTCTCTTCTTATTAGGACCAAAAATCCTCTTACCTCGACAAATCTCCATTTCTGTACCCGATGAACTCGACGATCTTTCACTTTTTCACAAAGCAATTGCTGCTGAAACCACTTTTCCGAAACACCCATCTCACAAAAAACTCCGTCTTGGATCCGCTACTGTTCGTCCACCAAAAATCGCATTTATGTTCTTAACAAATTCAGATTTGAAGTTTTCCCCAATTTGGGAGAAGTTCTTCAATGGTACTAAACCTGTAGATCCACATCTATACAATATCTACATACACGCTGACCCATCTATCAAGATTTCACCTTTAATGGGTGTTTTTAAAGATCGATTAATTCCGGCGAAGAGAACTCAACGTTCATCGCCGACACTCATATCTGCTGCCCGGAGATTACTTGCTCATGCTTTACTTGACGACCCATCAAACTCGTATTTCGCTCTTATCTCACAACATTGTATACCTTTACACTCTTTTAATTACTTTTACAATTTTTTACTTGATACCCAGAAATTGTCGAGGAAAATGGAGTTCCCTAGTTATATTGAGATTCTTGATGAATCTGATTCGTTATTAGATAGGTATAATGCAAGAGGGAAGAATATAATGGAACCTGAGGTGAAATTTGAGGAATTTAAAGTTGGTTCACAGTTTTTTGTGTTAACAAGAAAGCATTCTTTAATGGTGATCAAAGATAGGAAGTTATGGAGGAAATTTAGAAAACCATGTTTAAATGTTGAGTCTTGTTATCCAGAAGAGCATTATTTTCCTACTTTGTTATCAATGGAGGATCCTAATGGTTGTACCAAGTATACATTGACAAATGTGAATTGGACTGATACAGTTGATGGTCATCCACATACTTATCATCCTTCTGAGGTTTCTTCAAAGCTGATTTATGATCTTAGAGAGTCAAATTCTACATATTCATACATGTTTGCAAGGAAATTTTCACCTGATTGCTTGAACCCTTTGATGGAAATGGCAGAGTCAGTCATCTTCAAGGACTAGTTCTTGCTTGAGGCAATG : GTGAGATGATGAAGGAGTGAAGACAAATCAAAGGCAAAAACTTTGATGATGTTGTGAGGACAAAAAAAGATTGGTTTGTTGTGTAGGAGTAACACATGTGGAAATAAGGTATTTTTTTTGAAGGGTTTGTTGAAAAACAACAATGCCTTCAAACCAAGTAAATCCCAAAAGGGAAGTATCCAAAACTCAAAGTTTGGATGAGCTTTCAAAGAAAAGCAATGGAAAAGCTAGTTTTAGTAGTAGTAGTTGAGCTGGTAATTTGATGATGTAAAACATGTCTTAGTTGTAGCATCTAGTATTCATTTGGTGTTTGTGTGTGTTGCTCTCTATATTGTTCGGATTCTTCATGAATACCGTCCAGAGTGTGTCTGATCCTCTAAAAGCTATGCTTTTTTTAAAGATCTGATACGAATGTGACAACAATTTTGGAGGGTCGGAGCAATATGGGTTTTGCTTTGTACATAGATGGCAAGTATATATGTGTTTTAGGGAGAGATTAGCCTTGAACAAAATCAAGAAAAGTGCTAAACTCTATTGTTTTTTTTATTTTTCTACTACTTGTGGAAATGAATCATTGTATCAAAACATTTACTATCCAATGTAGTAAATGATTTTTAGAGAA</gDNA_template>
            <first_frame> F  C  C  F  T  S  F  T  S  I  F  L  H  *  W  *  F  C  C  N  K  K  I  C  S  D  Y  L  *  L  S  L  F  L  L  F  S  F  L  F  L  F  S  S  Y  *  D  Q  K  S  S  Y  L  D  K  S  P  F  L  Y  P  M  N  S  T  I  F  H  F  F  T  K  Q  L  L  L  K  P  L  F  R  N  T  H  L  T  K  N  S  V  L  D  P  L  L  F  V  H  Q  K  S  H  L  C  S  *  Q  I  Q  I  *  S  F  P  Q  F  G  R  S  S  S  M  V  L  N  L  *  I  H  I  Y  T  I  S  T  Y  T  L  T  H  L  S  R  F  H  L  *  W  V  F  L  K  I  D  *  F  R  R  R  E  L  N  V  H  R  R  H  S  Y  L  L  P  G  D  Y  L  L  M  L  Y  L  T  T  H  Q  T  R  I  S  L  L  S  H  N  I  V  Y  L  Y  T  L  L  I  T  F  T  I  F  Y  L  I  P  R  N  C  R  G  K  W  S  S  L  V  I  L  R  F  L  M  N  L  I  R  Y  *  I  G  I  M  Q  E  G  R  I  *  W  N  L  R  *  N  L  R  N  L  K  L  V  H  S  F  L  C  *  Q  E  S  I  L  *  W  *  S  K  I  G  S  Y  G  G  N  L  E  N  H  V  *  M  L  S  L  V  I  Q  K  S  I  I  F  L  L  C  Y  Q  W  R  I  L  M  V  V  P  S  I  H  *  Q  M  *  I  G  L  I  Q  L  M  V  I  H  I  L  I  I  L  L  R  F  L  Q  S  *  F  M  I  L  E  S  Q  I  L  H  I  H  T  C  L  Q  G  N  F  H  L  I  A  *  T  L  *  W  K  W  Q  S  Q  S  S  S  R  T  S  S  C  L  R  Q  W :   *  D  D  E  G  V  K  T  N  Q  R  Q  K  L  *  *  C  C  E  D  K  K  R  L  V  C  C  V  G  V  T  H  V  E  I  R  Y  F  F  *  R  V  C  *  K  T  T  M  P  S  N  Q  V  N  P  K  R  E  V  S  K  T  Q  S  L  D  E  L  S  K  K  S  N  G  K  A  S  F  S  S  S  S  *  A  G  N  L  M  M  *  N  M  S  *  L  *  H  L  V  F  I  W  C  L  C  V  L  L  S  I  L  F  G  F  F  M  N  T  V  Q  S  V  S  D  P  L  K  A  M  L  F  L  K  I  *  Y  E  C  D  N  N  F  G  G  S  E  Q  Y  G  F  C  F  V  H  R  W  Q  V  Y  M  C  F  R  E  R  L  A  L  N  K  I  K  K  S  A  K  L  Y  C  F  F  Y  F  S  T  T  C  G  N  E  S  L  Y  Q  N  I  Y  Y  P  M  *  *  M  I  F  R  E </first_frame>
            <second_frame>  S  V  A  S  L  L  S  L  Q  S  F  S  I  N  G  D  F  A  V  T  R  K  Y  V  Q  I  I  C  S  Y  P  F  S  Y  S  S  H  F  C  S  Y  S  L  L  I  R  T  K  N  P  L  T  S  T  N  L  H  F  C  T  R  *  T  R  R  S  F  T  F  S  Q  S  N  C  C  *  N  H  F  S  E  T  P  I  S  Q  K  T  P  S  W  I  R  Y  C  S  S  T  K  N  R  I  Y  V  L  N  K  F  R  F  E  V  F  P  N  L  G  E  V  L  Q  W  Y  *  T  C  R  S  T  S  I  Q  Y  L  H  T  R  *  P  I  Y  Q  D  F  T  F  N  G  C  F  *  R  S  I  N  S  G  E  E  N  S  T  F  I  A  D  T  H  I  C  C  P  E  I  T  C  S  C  F  T  *  R  P  I  K  L  V  F  R  S  Y  L  T  T  L  Y  T  F  T  L  F  *  L  L  L  Q  F  F  T  *  Y  P  E  I  V  E  E  N  G  V  P  *  L  Y  *  D  S  *  *  I  *  F  V  I  R  *  V  *  C  K  R  E  E  Y  N  G  T  *  G  E  I  *  G  I  *  S  W  F  T  V  F  C  V  N  K  K  A  F  F  N  G  D  Q  R  *  E  V  M  E  E  I  *  K  T  M  F  K  C  *  V  L  L  S  R  R  A  L  F  S  Y  F  V  I  N  G  G  S  *  W  L  Y  Q  V  Y  I  D  K  C  E  L  D  *  Y  S  *  W  S  S  T  Y  L  S  S  F  *  G  F  F  K  A  D  L  *  S  *  R  V  K  F  Y  I  F  I  H  V  C  K  E  I  F  T  *  L  L  E  P  F  D  G  N  G  R  V  S  H  L  Q  G  L  V  L  A  *  G  N   : G  E  M  M  K  E  *  R  Q  I  K  G  K  N  F  D  D  V  V  R  T  K  K  D  W  F  V  V  *  E  *  H  M  W  K  *  G  I  F  F  E  G  F  V  E  K  Q  Q  C  L  Q  T  K  *  I  P  K  G  K  Y  P  K  L  K  V  W  M  S  F  Q  R  K  A  M  E  K  L  V  L  V  V  V  V  E  L  V  I  *  *  C  K  T  C  L  S  C  S  I  *  Y  S  F  G  V  C  V  C  C  S  L  Y  C  S  D  S  S  *  I  P  S  R  V  C  L  I  L  *  K  L  C  F  F  *  R  S  D  T  N  V  T  T  I  L  E  G  R  S  N  M  G  F  A  L  Y  I  D  G  K  Y  I  C  V  L  G  R  D  *  P  *  T  K  S  R  K  V  L  N  S  I  V  F  F  I  F  L  L  L  V  E  M  N  H  C  I  K  T  F  T  I  Q  C  S  K  *  F  L  E   </second_frame>
            <third_frame>   L  L  L  H  F  F  H  F  N  L  S  P  L  M  V  I  L  L  *  Q  E  N  M  F  R  L  S  V  V  I  P  F  L  T  L  L  I  S  V  L  I  L  F  L  L  G  P  K  I  L  L  P  R  Q  I  S  I  S  V  P  D  E  L  D  D  L  S  L  F  H  K  A  I  A  A  E  T  T  F  P  K  H  P  S  H  K  K  L  R  L  G  S  A  T  V  R  P  P  K  I  A  F  M  F  L  T  N  S  D  L  K  F  S  P  I  W  E  K  F  F  N  G  T  K  P  V  D  P  H  L  Y  N  I  Y  I  H  A  D  P  S  I  K  I  S  P  L  M  G  V  F  K  D  R  L  I  P  A  K  R  T  Q  R  S  S  P  T  L  I  S  A  A  R  R  L  L  A  H  A  L  L  D  D  P  S  N  S  Y  F  A  L  I  S  Q  H  C  I  P  L  H  S  F  N  Y  F  Y  N  F  L  L  D  T  Q  K  L  S  R  K  M  E  F  P  S  Y  I  E  I  L  D  E  S  D  S  L  L  D  R  Y  N  A  R  G  K  N  I  M  E  P  E  V  K  F  E  E  F  K  V  G  S  Q  F  F  V  L  T  R  K  H  S  L  M  V  I  K  D  R  K  L  W  R  K  F  R  K  P  C  L  N  V  E  S  C  Y  P  E  E  H  Y  F  P  T  L  L  S  M  E  D  P  N  G  C  T  K  Y  T  L  T  N  V  N  W  T  D  T  V  D  G  H  P  H  T  Y  H  P  S  E  V  S  S  K  L  I  Y  D  L  R  E  S  N  S  T  Y  S  Y  M  F  A  R  K  F  S  P  D  C  L  N  P  L  M  E  M  A  E  S  V  I  F  K  D  *  F  L  L  E  A  M  :  V  R  *  *  R  S  E  D  K  S  K  A  K  T  L  M  M  L  *  G  Q  K  K  I  G  L  L  C  R  S  N  T  C  G  N  K  V  F  F  L  K  G  L  L  K  N  N  N  A  F  K  P  S  K  S  Q  K  G  S  I  Q  N  S  K  F  G  *  A  F  K  E  K  Q  W  K  S  *  F  *  *  *  *  L  S  W  *  F  D  D  V  K  H  V  L  V  V  A  S  S  I  H  L  V  F  V  C  V  A  L  Y  I  V  R  I  L  H  E  Y  R  P  E  C  V  *  S  S  K  S  Y  A  F  F  K  D  L  I  R  M  *  Q  Q  F  W  R  V  G  A  I  W  V  L  L  C  T  *  M  A  S  I  Y  V  F  *  G  E  I  S  L  E  Q  N  Q  E  K  C  *  T  L  L  F  F  L  F  F  Y  Y  L  W  K  *  I  I  V  S  K  H  L  L  S  N  V  V  N  D  F  *  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30549" stop="31628"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1077</number_coding_nucleotides>
                  <number_encoded_amino_acids>359</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QENMFRLSVVIPFLTLLISVLILFLLGPKILLPRQISISVPDELDDLSLFHKAIAAETTFPKHPSHKKLRLGSATVRPPKIAFMFLTNSDLKFSPIWEKFFNGTKPVDPHLYNIYIHADPSIKISPLMGVFKDRLIPAKRTQRSSPTLISAARRLLAHALLDDPSNSYFALISQHCIPLHSFNYFYNFLLDTQKLSRKMEFPSYIEILDESDSLLDRYNARGKNIMEPEVKFEEFKVGSQFFVLTRKHSLMVIKDRKLWRKFRKPCLNVESCYPEEHYFPTLLSMEDPNGCTKYTLTNVNWTDTVDGHPHTYHPSEVSSKLIYDLRESNSTYSYMFARKFSPDCLNPLMEMAESVIFKD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33247" stop="33444"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YECDNNFGGSEQYGFCFVHRWQVYMCFRERLALNKIKKSAKLYCFFYFSTTCGNESLYQNIYYPM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="37350" PGL_stop="40176"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37350" e_stop="37544"/>
            <exon e_start="39135" e_stop="40176"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.963" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37350" e_stop="37544" e_length="195"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.963">
            <gDNA_intron_boundary i_start="37545" i_stop="39134" i_length="1590"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="39135" e_stop="40176" e_length="1042"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37350" stop="37544"/>
              <exon start="39135" stop="40176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318659" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAAAGGAGGAGAAGAGAGCGGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG : GTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATTAGAGGAAAAAGTAATAACAGAGTGAAACATAATGCTAATGTTTATGTATTTTTCAAAATTTATGGG</gDNA_template>
            <first_frame> W  K  G  G  E  E  S  G  T  R  S  Y  A  S  D  L  K  I  S  T  E  K  A  V  T  Q  R  E  E  K  K  N  E  N  K  *  R  R  K  L  W  D  R  L  I  Q  N  W  I  Q  F  F  R  I  T  S  V  I  V  I  V  L  F  R  S  :  V  A  Q  P  L  R  C  G  K  S  A  V  S  S  A  R  T  A  Q  R  N  V  V  A  W  L  Y  H  K  A  L  S  L  Q  L  N  Q  Q  L  F  F  K  F  P  R  S  F  A  P  H  L  P  K  F  A  F  S  F  Q  V  L  P  F  R  H  V  L  N  I  I  *  D  L  F  Q  G  T  G  C  Y  R  L  L  *  A  Y  M  S  M  M  V  I  Q  P  R  *  L  D  Q  *  L  L  L  T  Y  A  I  Y  I  T  L  *  V  G  L  E  L  K  C  D  N  Q  L  L  L  F  P  E  K  A  I  M  Q  L  C  K  T  L  S  D  *  L  Y  G  V  F  V  Y  V  Y  D  Y  K  A  R  S  F  G  L  L  L  *  I  L  E  K  *  C  I  F  C  C  L  T  F  L  *  D  I  V  H  V  N  L  P  N  P  G  *  S  S  T  V  S  I  F  W  L  N  C  L  *  T  L  S  T  H  I  L  F  V  Q  F  M  T  L  R  N  F  R  C  I  S  H  C  R  S  A  H  C  R  T  H  *  F  Q  A  G  K  F  S  I  R  S  A  T  N  E  S  *  S  S  C  S  R  W  Y  S  R  T  D  G  W  F  S  I  L  L  W  R  *  F  Q  A  R  W  M  T  D  *  L  T  T  K  R  L  P  H  S  S  V  M  S  *  F  S  A  G  K  K  *  F  H  I  L  L  G  C  S  F  F  T  W  L  S  L  P  P  Q  S  H  K  K  E  N  *  R  K  K  *  *  Q  S  E  T  *  C  *  C  L  C  I  F  Q  N  L  W  </first_frame>
            <second_frame>  G  K  E  E  K  R  A  A  H  V  V  T  L  Q  T  S  K  F  R  L  K  K  Q  L  H  K  E  K  R  R  R  T  K  T  N  N  E  E  N  Y  G  I  D  *  F  R  I  G  F  N  F  S  G  *  Q  A  S  S  *  S  S  C  S  D  R :   W  L  S  R  Y  D  V  V  N  P  Q  S  H  L  Q  E  Q  P  N  A  M  *  *  H  G  S  T  T  R  H  *  A  Y  N  *  T  S  N  S  F  S  S  F  L  V  H  L  L  P  T  F  L  N  L  L  S  V  F  K  F  Y  P  L  G  M  F  *  T  L  Y  R  T  C  F  K  V  Q  D  V  T  D  Y  S  R  R  I  C  Q  *  W  *  F  S  L  V  N  W  I  N  S  C  Y  *  L  M  L  Y  I  *  L  Y  R  L  G  L  S  L  N  V  I  T  N  F  S  Y  F  Q  K  K  Q  *  C  N  F  A  K  P  C  L  I  N  C  M  E  C  S  Y  M  F  M  I  I  R  R  G  H  L  V  F  C  Y  E  F  L  R  S  D  A  F  S  A  A  L  L  S  C  E  I  S  F  M  L  I  F  P  I  P  V  D  P  P  L  F  Q  F  F  G  *  I  V  S  E  H  S  Q  L  I  F  C  L  C  N  L  *  L  C  E  I  S  G  A  F  L  T  A  G  V  L  T  A  G  L  I  S  F  K  R  G  N  S  Q  L  G  Q  Q  L  M  R  A  R  V  L  V  Q  G  G  T  V  A  L  M  V  G  S  A  Y  Y  Y  G  D  N  F  K  R  A  G  *  L  T  D  *  L  P  N  D  S  L  I  R  L  S  *  V  D  F  L  L  G  K  N  D  S  I  S  C  *  D  A  V  S  L  H  G  C  H  C  H  P  N  H  I  R  K  K  I  R  G  K  S  N  N  R  V  K  H  N  A  N  V  Y  V  F  F  K  I  Y  G </second_frame>
            <third_frame>   E  R  R  R  R  E  R  H  T  *  L  R  F  R  P  Q  N  F  D  *  K  S  S  Y  T  K  R  R  E  E  E  R  K  Q  I  T  K  K  I  M  G  S  T  D  S  E  L  D  S  I  F  Q  D  N  K  R  H  R  N  R  L  V  P  I   : G  G  S  A  A  T  M  W  *  I  R  S  L  I  C  K  N  S  P  T  Q  C  S  S  M  A  L  P  Q  G  I  K  L  T  I  E  P  A  T  L  F  Q  V  S  S  F  I  C  S  P  P  S  *  I  C  F  Q  F  S  S  F  T  L  *  A  C  F  E  H  Y  I  G  L  V  S  R  Y  R  M  L  Q  I  T  L  G  V  Y  V  N  D  G  N  S  A  S  L  I  G  S  I  A  V  I  N  L  C  Y  I  Y  N  F  I  G  W  A  *  A  *  M  *  *  P  T  S  P  I  S  R  K  S  N  N  A  T  L  Q  N  L  V  *  L  T  V  W  S  V  R  I  C  L  *  L  *  G  E  V  I  W  S  S  V  M  N  S  *  E  V  M  H  F  L  L  P  Y  F  P  V  R  Y  R  S  C  *  S  S  Q  S  R  L  I  L  H  C  F  N  F  L  A  K  L  S  L  N  T  L  N  S  Y  S  V  C  A  I  Y  D  F  A  K  F  Q  V  H  F  S  L  Q  E  C  S  L  P  D  S  L  V  S  S  G  E  I  L  N  *  V  S  N  *  *  E  L  E  F  L  F  K  V  V  Q  S  H  *  W  L  V  Q  H  I  T  M  E  I  I  S  S  A  L  D  D  *  L  T  D  Y  Q  T  T  P  S  F  V  C  H  E  L  I  F  C  W  E  K  M  I  P  Y  L  A  R  M  Q  F  L  Y  M  A  V  I  A  T  P  I  T  *  E  R  K  L  E  E  K  V  I  T  E  *  N  I  M  L  M  F  M  Y  F  S  K  F  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37458" stop="37544"/>
                    <exon start="39135" stop="39347"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRKLWDRLIQNWIQFFRITSVIVIVLFRSVAQPLRCGKSAVSSARTAQRNVVAWLYHKALSLQLNQQLFFKFPRSFAPHLPKFAFSFQVLPFRHVLNII*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39529" stop="39729"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CNFAKPCLINCMECSYMFMIIRRGHLVFCYEFLRSDAFSAALLSCEISFMLIFPIPVDPPLFQFFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="41032" PGL_stop="45009"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41032" e_stop="41156"/>
            <exon e_start="42420" e_stop="42490"/>
            <exon e_start="42668" e_stop="42747"/>
            <exon e_start="43625" e_stop="43739"/>
            <exon e_start="43952" e_stop="44004"/>
            <exon e_start="44434" e_stop="44562"/>
            <exon e_start="44643" e_stop="45009"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.957" e_score="0.960"/>
          <exon-intron don_prob="0.199" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.642" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="41032" e_stop="41156" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.957">
            <gDNA_intron_boundary i_start="41157" i_stop="42419" i_length="1263"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42420" e_stop="42490" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.199" acc_prob="0.997">
            <gDNA_intron_boundary i_start="42491" i_stop="42667" i_length="177"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42668" e_stop="42747" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.937" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42748" i_stop="43624" i_length="877"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43625" e_stop="43739" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="43740" i_stop="43951" i_length="212"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43952" e_stop="44004" e_length="53"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44005" i_stop="44433" i_length="429"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="44434" e_stop="44562" e_length="129"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.642">
            <gDNA_intron_boundary i_start="44563" i_stop="44642" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="44643" e_stop="45009" e_length="367"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41032" stop="41156"/>
              <exon start="42420" stop="42490"/>
              <exon start="42668" stop="42747"/>
              <exon start="43625" stop="43739"/>
              <exon start="43952" stop="44004"/>
              <exon start="44434" stop="44562"/>
              <exon start="44643" stop="45009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325178" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGACATGGTAGGTAGTGGGTTACCTTTTTTGTTGAGCTACAGCCATGGAAGCTATTTTGAAGAAGAAGACAAAGTGCGAAGGACAATTTCTCAATTTTTTCAGAAGAAAAAAAAAAAGCCGAAAG : ATTCTGAGGATCAATAGTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATT : GATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAA : GCCTTTATGAAGGTGGAGTTTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATCGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCT : GTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTG : ATCTCTTAAACGTTTTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAATATGAGCAAAAAGTGAAAG : AGTACTGTGAACGGTACGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGATAGTGATGATGAGATTAGTGAAGAGGAGTTCAGTGGACAAAGCGAAAGCGATGATGAAGTTGTTGGACATGCTGATCCTTGAGTGAATAAACTAGGATCCTAAAATGGAGATCATGTTTTTAGTTCATTTTTCTCCTTACATGTAATATCCGATTCGTCGTCGCATGTAAATCTAGGTGCCAAAGATAGTTTAGGGACAATATACATAACCTACAGATGTGTGATGAATCTCAGTCTGTGTAGAAACTCTCTACCTTATGGTCAATGTAACTTACCAATATATGTGTTAAAAATTCAGGTTCTTGTTTTAAA</gDNA_template>
            <first_frame> *  H  G  R  *  W  V  T  F  F  V  E  L  Q  P  W  K  L  F  *  R  R  R  Q  S  A  K  D  N  F  S  I  F  S  E  E  K  K  K  A  E  R :   F  *  G  S  I  V  S  *  K  C  L  L  Q  A  K  E  E  I  W  M  L  *  N   : *  *  *  V  I  I  R  W  R  Q  L  M  M  E  L  R  S  S  T  W  N  F  T  A  Q  K  K  :  A  F  M  K  V  E  F  G  K  *  G  S  S  C  Q  M  P  T  L  T  S  L  L  P  S  G  F  S  T  K  Y  S  T  L  M  L  M  S   : C  L  A  L  Y  V  W  M  S  S  I  S  H  G  A  L  C  L  :  I  S  *  T  F  L  R  F  S  C  H  S  F  C  Y  I  R  I  L  R  I  H  *  M  V  M  Q  P  H  *  *  *  K  T  R  I  N  M  S  K  K  *  K  :  S  T  V  N  G  T  Q  R  R  R  M  S  L  A  H  Q  K  M  I  V  M  M  R  L  V  K  R  S  S  V  D  K  A  K  A  M  M  K  L  L  D  M  L  I  L  E  *  I  N  *  D  P  K  M  E  I  M  F  L  V  H  F  S  P  Y  M  *  Y  P  I  R  R  R  M  *  I  *  V  P  K  I  V  *  G  Q  Y  T  *  P  T  D  V  *  *  I  S  V  C  V  E  T  L  Y  L  M  V  N  V  T  Y  Q  Y  M  C  *  K  F  R  F  L  F  *  </first_frame>
            <second_frame>  D  M  V  G  S  G  L  P  F  L  L  S  Y  S  H  G  S  Y  F  E  E  E  D  K  V  R  R  T  I  S  Q  F  F  Q  K  K  K  K  K  P  K   : D  S  E  D  Q  *  L  V  E  N  V  F  S  K  Q  K  K  R  Y  G  C  Y  E  I  :  D  D  E  *  L  *  G  G  D  N  *  *  W  N  Y  G  V  Q  R  G  I  S  R  P  K  R  K :   P  L  *  R  W  S  L  E  N  K  G  R  V  A  R  C  L  P  L  Q  V  S  F  H  R  V  S  Q  Q  N  I  P  P  *  C  *  *  A  :  V  W  L  C  M  F  G  C  H  Q  S  V  M  E  P  Y  V  * :   S  L  K  R  F  *  G  F  P  A  T  A  F  A  I  S  E  S  F  G  S  I  K  W  *  C  S  L  T  D  D  E  R  Q  E  S  I  *  A  K  S  E  R :   V  L  *  T  V  R  K  E  G  E  C  R  W  H  T  K  R  *  *  *  *  *  D  *  *  R  G  V  Q  W  T  K  R  K  R  *  *  S  C  W  T  C  *  S  L  S  E  *  T  R  I  L  K  W  R  S  C  F  *  F  I  F  L  L  T  C  N  I  R  F  V  V  A  C  K  S  R  C  Q  R  *  F  R  D  N  I  H  N  L  Q  M  C  D  E  S  Q  S  V  *  K  L  S  T  L  W  S  M  *  L  T  N  I  C  V  K  N  S  G  S  C  F  K </second_frame>
            <third_frame>   T  W  *  V  V  G  Y  L  F  C  *  A  T  A  M  E  A  I  L  K  K  K  T  K  C  E  G  Q  F  L  N  F  F  R  R  K  K  K  S  R  K  :  I  L  R  I  N  S  *  L  K  M  S  S  P  S  K  R  R  D  M  D  V  M  K  L :   M  M  S  D  Y  K  V  E  T  I  N  D  G  I  T  E  F  N  V  E  F  H  G  P  K  E   : S  L  Y  E  G  G  V  W  K  I  R  V  E  L  P  D  A  Y  P  Y  K  S  P  S  I  G  F  L  N  K  I  F  H  P  N  V  D  E  L :   S  G  S  V  C  L  D  V  I  N  Q  S  W  S  P  M  F   : D  L  L  N  V  F  E  V  F  L  P  Q  L  L  L  Y  P  N  P  S  D  P  L  N  G  D  A  A  S  L  M  M  K  D  K  N  Q  Y  E  Q  K  V  K   : E  Y  C  E  R  Y  A  K  K  E  N  V  V  G  T  P  K  D  D  S  D  D  E  I  S  E  E  E  F  S  G  Q  S  E  S  D  D  E  V  V  G  H  A  D  P  *  V  N  K  L  G  S  *  N  G  D  H  V  F  S  S  F  F  S  L  H  V  I  S  D  S  S  S  H  V  N  L  G  A  K  D  S  L  G  T  I  Y  I  T  Y  R  C  V  M  N  L  S  L  C  R  N  S  L  P  Y  G  Q  C  N  L  P  I  Y  V  L  K  I  Q  V  L  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42441" stop="42490"/>
                    <exon start="42668" stop="42747"/>
                    <exon start="43625" stop="43739"/>
                    <exon start="43952" stop="44004"/>
                    <exon start="44434" stop="44562"/>
                    <exon start="44643" stop="44779"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKMSSPSKRRDMDVMKLMMSDYKVETINDGITEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFLNKIFHPNVDELSGSVCLDVINQSWSPMFDLLNVFEVFLPQLLLYPNPSDPLNGDAASLMMKDKNQYEQKVKEYCERYAKKENVVGTPKDDSDDEISEEEFSGQSESDDEVVGHADP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44801" stop="45007"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NGDHVFSSFFSLHVISDSSSHVNLGAKDSLGTIYITYRCVMNLSLCRNSLPYGQCNLPIYVLKIQVLVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="56701" PGL_stop="48817"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56701" e_stop="56647"/>
            <exon e_start="55334" e_stop="55268"/>
            <exon e_start="55167" e_stop="55132"/>
            <exon e_start="54974" e_stop="54830"/>
            <exon e_start="54393" e_stop="54235"/>
            <exon e_start="54118" e_stop="54048"/>
            <exon e_start="53965" e_stop="53887"/>
            <exon e_start="53770" e_stop="53655"/>
            <exon e_start="52496" e_stop="52349"/>
            <exon e_start="51177" e_stop="51108"/>
            <exon e_start="49182" e_stop="48817"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="0.909"/>
          <exon-intron don_prob="0.949" acc_prob="0.920" e_score="0.985"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.571" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.869" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.751" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.937" e_score="0.991"/>
          <exon-intron don_prob="0.759" acc_prob="0.872" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="56701" e_stop="56647" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="56646" i_stop="55335" i_length="1312"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="55334" e_stop="55268" e_length="67"/>
          </exon>
          <intron i_serial="2" don_prob="0.949" acc_prob="0.920">
            <gDNA_intron_boundary i_start="55267" i_stop="55168" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55167" e_stop="55132" e_length="36"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55131" i_stop="54975" i_length="157"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54974" e_stop="54830" e_length="145"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.571">
            <gDNA_intron_boundary i_start="54829" i_stop="54394" i_length="436"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="54393" e_stop="54235" e_length="159"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.869">
            <gDNA_intron_boundary i_start="54234" i_stop="54119" i_length="116"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="54118" e_stop="54048" e_length="71"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.998">
            <gDNA_intron_boundary i_start="54047" i_stop="53966" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="53965" e_stop="53887" e_length="79"/>
          </exon>
          <intron i_serial="7" don_prob="0.969" acc_prob="0.751">
            <gDNA_intron_boundary i_start="53886" i_stop="53771" i_length="116"/>
          </intron>
          <exon e_serial="8" e_score="0.991">
            <gDNA_exon_boundary e_start="53770" e_stop="53655" e_length="116"/>
          </exon>
          <intron i_serial="8" don_prob="0.963" acc_prob="0.937">
            <gDNA_intron_boundary i_start="53654" i_stop="52497" i_length="1158"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="52496" e_stop="52349" e_length="148"/>
          </exon>
          <intron i_serial="9" don_prob="0.759" acc_prob="0.872">
            <gDNA_intron_boundary i_start="52348" i_stop="51178" i_length="1171"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="51177" e_stop="51108" e_length="70"/>
          </exon>
          <intron i_serial="10" don_prob="0.992" acc_prob="0.984">
            <gDNA_intron_boundary i_start="51107" i_stop="49183" i_length="1925"/>
          </intron>
          <exon e_serial="11" e_score="0.992">
            <gDNA_exon_boundary e_start="49182" e_stop="48817" e_length="366"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56701" stop="56647"/>
              <exon start="55334" stop="55268"/>
              <exon start="55167" stop="55132"/>
              <exon start="54974" stop="54830"/>
              <exon start="54393" stop="54235"/>
              <exon start="54118" stop="54048"/>
              <exon start="53965" stop="53887"/>
              <exon start="53770" stop="53655"/>
              <exon start="52496" stop="52393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54287" stop="54235"/>
              <exon start="54118" stop="54048"/>
              <exon start="53965" stop="53887"/>
              <exon start="53770" stop="53655"/>
              <exon start="52496" stop="52349"/>
              <exon start="51177" stop="51108"/>
              <exon start="49182" stop="48817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339687" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGAAACTCATTAATCGGCTAATGGGTGCTCAGAAAAGCGTTCGTGCTGGCAAAG : CTAAAATAGATGTCAATGTGGATTTCACCCATAAACTATGTGCTGCTTTGATGCTCCAGCCTTTCAG : GAATTCTGGCAGTCCCCTTGAATTGGTAATTGGCAG : TCTTTGCATAAAACACCCAAATTTATTTGGCAAGAGCGAGAAGCTAGATGTTTTGTGGGATAAAGGACTCTATGATTCCAATATCTTGATTACTTATCGGAAGCCAAGACCAGAATGGCTTGCTCAACAGTCTTTTGTTGTTCAG : CATTCCATTTCTCCCGAGATTGGGGTACATGGCTTACCAGATGACAACTTCTCTCGATCAGGAAGTGGTGGAGTTAACTTATCTCGCTTATCTGCTGGCTTAGATTTGAGCGAGCCTGCAAGTTCCAACTGGAGCAGCAAGACAAGTATAAAATTTGAA : CATATTCGTCCTGTAAGTGATGAGGGTCGGTCAATAAATAGAGATACTCATGGGTTTCCGGTGACTTGCAG : TGGTGGCTATAATGACAGTATGGTAGTAGTTAAACAGGAGTCTCGATACGCAAAAGCAAACGATCGTAGTTTTTCTCAA : TTTAGCCTGCAAATTGAACAGGGGGTTCCCATTCTTTCCAAGTGGCTGATCTTTAACCGATTCAAGTTTGTTGCATCAAGGGGACTAAAACTTGGGCCAGCTTTTCTCTTGTCAAG : CCTTACGGGTGGTTCTATCGTGGGGGATATAGCTCCCTATCAAGCTTTTGCAATTGGCGGTCTTGGTAGCGTCCGAGGGTATGGTGAAGGAGCTGTTGGTTGTGGTAGATCTTGTCTGGTTGCTAACAATGAACTGACGTTTCCTTTG : AGCCAGGTGCTTGATGGTGCTGTCTTCTTGGATTGTGGATCTGACTTGGGCTCAGGTCGTCATGTGCCCG : GAAACCCTGCTCTTAGGCTTGGCAAACCAGGAAATGGAATTGGCTTCGGATATGGCCTTAGATTCAAGTCACAGCTGGGCCATTTCCAGGTGGACTATGCAGTCAATGCATTTCAACAACGAACTGTCTACTTCGGCTTCAGTAACCTCCCTTCGTGAGTCTTAACCACAACACTTGCAACCATGACATAACTTATGAACAGCGCTGCATCCATAGAGAAAATTATGAGGATATCTGCAAGAGATCAGATGTTAGGGTCCGAGCAGTGGTCCGTCCCTTATAGGAACAGCAGTGAAGATTTCTTTTTGAAAACATATTGAGCAAATTAGTGCACAGAGGTGGTTCCATTTTCCCTGTACCTCTTCA</gDNA_template>
            <first_frame> E  K  L  I  N  R  L  M  G  A  Q  K  S  V  R  A  G  K   : A  K  I  D  V  N  V  D  F  T  H  K  L  C  A  A  L  M  L  Q  P  F  R :   N  S  G  S  P  L  E  L  V  I  G  S :   L  C  I  K  H  P  N  L  F  G  K  S  E  K  L  D  V  L  W  D  K  G  L  Y  D  S  N  I  L  I  T  Y  R  K  P  R  P  E  W  L  A  Q  Q  S  F  V  V  Q  :  H  S  I  S  P  E  I  G  V  H  G  L  P  D  D  N  F  S  R  S  G  S  G  G  V  N  L  S  R  L  S  A  G  L  D  L  S  E  P  A  S  S  N  W  S  S  K  T  S  I  K  F  E  :  H  I  R  P  V  S  D  E  G  R  S  I  N  R  D  T  H  G  F  P  V  T  C  S :   G  G  Y  N  D  S  M  V  V  V  K  Q  E  S  R  Y  A  K  A  N  D  R  S  F  S  Q  :  F  S  L  Q  I  E  Q  G  V  P  I  L  S  K  W  L  I  F  N  R  F  K  F  V  A  S  R  G  L  K  L  G  P  A  F  L  L  S  S :   L  T  G  G  S  I  V  G  D  I  A  P  Y  Q  A  F  A  I  G  G  L  G  S  V  R  G  Y  G  E  G  A  V  G  C  G  R  S  C  L  V  A  N  N  E  L  T  F  P  L  :  S  Q  V  L  D  G  A  V  F  L  D  C  G  S  D  L  G  S  G  R  H  V  P   : G  N  P  A  L  R  L  G  K  P  G  N  G  I  G  F  G  Y  G  L  R  F  K  S  Q  L  G  H  F  Q  V  D  Y  A  V  N  A  F  Q  Q  R  T  V  Y  F  G  F  S  N  L  P  S  *  V  L  T  T  T  L  A  T  M  T  *  L  M  N  S  A  A  S  I  E  K  I  M  R  I  S  A  R  D  Q  M  L  G  S  E  Q  W  S  V  P  Y  R  N  S  S  E  D  F  F  L  K  T  Y  *  A  N  *  C  T  E  V  V  P  F  S  L  Y  L  F  </first_frame>
            <second_frame>  R  N  S  L  I  G  *  W  V  L  R  K  A  F  V  L  A  K  :  L  K  *  M  S  M  W  I  S  P  I  N  Y  V  L  L  *  C  S  S  L  S   : G  I  L  A  V  P  L  N  W  *  L  A   : V  F  A  *  N  T  Q  I  Y  L  A  R  A  R  S  *  M  F  C  G  I  K  D  S  M  I  P  I  S  *  L  L  I  G  S  Q  D  Q  N  G  L  L  N  S  L  L  L  F  S :   I  P  F  L  P  R  L  G  Y  M  A  Y  Q  M  T  T  S  L  D  Q  E  V  V  E  L  T  Y  L  A  Y  L  L  A  *  I  *  A  S  L  Q  V  P  T  G  A  A  R  Q  V  *  N  L  N :   I  F  V  L  *  V  M  R  V  G  Q  *  I  E  I  L  M  G  F  R  *  L  A   : V  V  A  I  M  T  V  W  *  *  L  N  R  S  L  D  T  Q  K  Q  T  I  V  V  F  L  N :   L  A  C  K  L  N  R  G  F  P  F  F  P  S  G  *  S  L  T  D  S  S  L  L  H  Q  G  D  *  N  L  G  Q  L  F  S  C  Q   : A  L  R  V  V  L  S  W  G  I  *  L  P  I  K  L  L  Q  L  A  V  L  V  A  S  E  G  M  V  K  E  L  L  V  V  V  D  L  V  W  L  L  T  M  N  *  R  F  L  * :   A  R  C  L  M  V  L  S  S  W  I  V  D  L  T  W  A  Q  V  V  M  C  P  :  E  T  L  L  L  G  L  A  N  Q  E  M  E  L  A  S  D  M  A  L  D  S  S  H  S  W  A  I  S  R  W  T  M  Q  S  M  H  F  N  N  E  L  S  T  S  A  S  V  T  S  L  R  E  S  *  P  Q  H  L  Q  P  *  H  N  L  *  T  A  L  H  P  *  R  K  L  *  G  Y  L  Q  E  I  R  C  *  G  P  S  S  G  P  S  L  I  G  T  A  V  K  I  S  F  *  K  H  I  E  Q  I  S  A  Q  R  W  F  H  F  P  C  T  S  S </second_frame>
            <third_frame>   E  T  H  *  S  A  N  G  C  S  E  K  R  S  C  W  Q  S :   *  N  R  C  Q  C  G  F  H  P  *  T  M  C  C  F  D  A  P  A  F  Q  :  E  F  W  Q  S  P  *  I  G  N  W  Q  :  S  L  H  K  T  P  K  F  I  W  Q  E  R  E  A  R  C  F  V  G  *  R  T  L  *  F  Q  Y  L  D  Y  L  S  E  A  K  T  R  M  A  C  S  T  V  F  C  C  S   : A  F  H  F  S  R  D  W  G  T  W  L  T  R  *  Q  L  L  S  I  R  K  W  W  S  *  L  I  S  L  I  C  W  L  R  F  E  R  A  C  K  F  Q  L  E  Q  Q  D  K  Y  K  I  *   : T  Y  S  S  C  K  *  *  G  S  V  N  K  *  R  Y  S  W  V  S  G  D  L  Q  :  W  W  L  *  *  Q  Y  G  S  S  *  T  G  V  S  I  R  K  S  K  R  S  *  F  F  S   : I  *  P  A  N  *  T  G  G  S  H  S  F  Q  V  A  D  L  *  P  I  Q  V  C  C  I  K  G  T  K  T  W  A  S  F  S  L  V  K  :  P  Y  G  W  F  Y  R  G  G  Y  S  S  L  S  S  F  C  N  W  R  S  W  *  R  P  R  V  W  *  R  S  C  W  L  W  *  I  L  S  G  C  *  Q  *  T  D  V  S  F   : E  P  G  A  *  W  C  C  L  L  G  L  W  I  *  L  G  L  R  S  S  C  A  R :   K  P  C  S  *  A  W  Q  T  R  K  W  N  W  L  R  I  W  P  *  I  Q  V  T  A  G  P  F  P  G  G  L  C  S  Q  C  I  S  T  T  N  C  L  L  R  L  Q  *  P  P  F  V  S  L  N  H  N  T  C  N  H  D  I  T  Y  E  Q  R  C  I  H  R  E  N  Y  E  D  I  C  K  R  S  D  V  R  V  R  A  V  V  R  P  L  *  E  Q  Q  *  R  F  L  F  E  N  I  L  S  K  L  V  H  R  G  G  S  I  F  P  V  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56701" stop="56647"/>
                    <exon start="55334" stop="55268"/>
                    <exon start="55167" stop="55132"/>
                    <exon start="54974" stop="54830"/>
                    <exon start="54393" stop="54235"/>
                    <exon start="54118" stop="54048"/>
                    <exon start="53965" stop="53887"/>
                    <exon start="53770" stop="53655"/>
                    <exon start="52496" stop="52349"/>
                    <exon start="51177" stop="51108"/>
                    <exon start="49182" stop="49025"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1101</number_coding_nucleotides>
                  <number_encoded_amino_acids>367</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKLINRLMGAQKSVRAGKAKIDVNVDFTHKLCAALMLQPFRNSGSPLELVIGSLCIKHPNLFGKSEKLDVLWDKGLYDSNILITYRKPRPEWLAQQSFVVQHSISPEIGVHGLPDDNFSRSGSGGVNLSRLSAGLDLSEPASSNWSSKTSIKFEHIRPVSDEGRSINRDTHGFPVTCSGGYNDSMVVVKQESRYAKANDRSFSQFSLQIEQGVPILSKWLIFNRFKFVASRGLKLGPAFLLSSLTGGSIVGDIAPYQAFAIGGLGSVRGYGEGAVGCGRSCLVANNELTFPLSQVLDGAVFLDCGSDLGSGRHVPGNPALRLGKPGNGIGFGYGLRFKSQLGHFQVDYAVNAFQQRTVYFGFSNLPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="58665" PGL_stop="59304"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58665" e_stop="59304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="58665" e_stop="59304" e_length="640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58665" stop="59304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328442" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAACTTTTAATTGCAATTTTTACATTTTTCTTCTTCTTATTCTTCCTCTTATTTTTGAATCATGTTGTTTAGCAAGAGTTCAAGTTCATATTATCAACAAGCTTCCTGATGGACTGGCAATGACTCTCCATTGTCAATCTCATGACAATGATTTAGGACAGTTGAGATTGACGGGAGGTGACGAAGCTAGTTGGACTTTTAGTGTTAATTTTTGGGGCACCACTATGTTTTATTGCGACGCTCAATGGGATGATAGTTCCACAACATATCGTTTTGTTACTTATGATGCCGCTCGGGATGCCCGACGATGTCAAACGGAATGCTGGTGGATGATCTCTGAAGAAGAAACGTTATATGGTTATAATCAAGAGAGTGAATACTGGGAGTTGTTTCCCTTCACCAGTGCATAAAATCTCTTAATGATGCCTATTATCTTCGTGTGTGTTTAAAAAATTATCAATTTTTCGTATTTAAGATTAACCAAATCCAATTATCGTTACTTCGTACAATGTAAGGTTGTTCGGTGATCAACACATGTAACATGTACAAGGCAATATGATATTTATATATAGTTACTATTACTTACAATTTCATCATTGCTGCAAAATTATCTTAATATAATTATAAAGTTTGATTAA</gDNA_template>
            <first_frame> E  N  F  *  L  Q  F  L  H  F  S  S  S  Y  S  S  S  Y  F  *  I  M  L  F  S  K  S  S  S  S  Y  Y  Q  Q  A  S  *  W  T  G  N  D  S  P  L  S  I  S  *  Q  *  F  R  T  V  E  I  D  G  R  *  R  S  *  L  D  F  *  C  *  F  L  G  H  H  Y  V  L  L  R  R  S  M  G  *  *  F  H  N  I  S  F  C  Y  L  *  C  R  S  G  C  P  T  M  S  N  G  M  L  V  D  D  L  *  R  R  N  V  I  W  L  *  S  R  E  *  I  L  G  V  V  S  L  H  Q  C  I  K  S  L  N  D  A  Y  Y  L  R  V  C  L  K  N  Y  Q  F  F  V  F  K  I  N  Q  I  Q  L  S  L  L  R  T  M  *  G  C  S  V  I  N  T  C  N  M  Y  K  A  I  *  Y  L  Y  I  V  T  I  T  Y  N  F  I  I  A  A  K  L  S  *  Y  N  Y  K  V  *  L  </first_frame>
            <second_frame>  K  T  F  N  C  N  F  Y  I  F  L  L  L  I  L  P  L  I  F  E  S  C  C  L  A  R  V  Q  V  H  I  I  N  K  L  P  D  G  L  A  M  T  L  H  C  Q  S  H  D  N  D  L  G  Q  L  R  L  T  G  G  D  E  A  S  W  T  F  S  V  N  F  W  G  T  T  M  F  Y  C  D  A  Q  W  D  D  S  S  T  T  Y  R  F  V  T  Y  D  A  A  R  D  A  R  R  C  Q  T  E  C  W  W  M  I  S  E  E  E  T  L  Y  G  Y  N  Q  E  S  E  Y  W  E  L  F  P  F  T  S  A  *  N  L  L  M  M  P  I  I  F  V  C  V  *  K  I  I  N  F  S  Y  L  R  L  T  K  S  N  Y  R  Y  F  V  Q  C  K  V  V  R  *  S  T  H  V  T  C  T  R  Q  Y  D  I  Y  I  *  L  L  L  L  T  I  S  S  L  L  Q  N  Y  L  N  I  I  I  K  F  D  * </second_frame>
            <third_frame>   K  L  L  I  A  I  F  T  F  F  F  F  L  F  F  L  L  F  L  N  H  V  V  *  Q  E  F  K  F  I  L  S  T  S  F  L  M  D  W  Q  *  L  S  I  V  N  L  M  T  M  I  *  D  S  *  D  *  R  E  V  T  K  L  V  G  L  L  V  L  I  F  G  A  P  L  C  F  I  A  T  L  N  G  M  I  V  P  Q  H  I  V  L  L  L  M  M  P  L  G  M  P  D  D  V  K  R  N  A  G  G  *  S  L  K  K  K  R  Y  M  V  I  I  K  R  V  N  T  G  S  C  F  P  S  P  V  H  K  I  S  *  *  C  L  L  S  S  C  V  F  K  K  L  S  I  F  R  I  *  D  *  P  N  P  I  I  V  T  S  Y  N  V  R  L  F  G  D  Q  H  M  *  H  V  Q  G  N  M  I  F  I  Y  S  Y  Y  Y  L  Q  F  H  H  C  C  K  I  I  L  I  *  L  *  S  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58666" stop="59076"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTFNCNFYIFLLLILPLIFESCCLARVQVHIINKLPDGLAMTLHCQSHDNDLGQLRLTGGDEASWTFSVNFWGTTMFYCDAQWDDSSTTYRFVTYDAARDARRCQTECWWMISEEETLYGYNQESEYWELFPFTSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="59865" PGL_stop="68158"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59865" e_stop="60247"/>
            <exon e_start="64880" e_stop="64981"/>
            <exon e_start="65057" e_stop="65143"/>
            <exon e_start="65785" e_stop="65878"/>
            <exon e_start="67287" e_stop="67343"/>
            <exon e_start="67660" e_stop="67739"/>
            <exon e_start="67831" e_stop="68158"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.842" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59865" e_stop="60247" e_length="383"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.910">
            <gDNA_intron_boundary i_start="60248" i_stop="64879" i_length="4632"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64880" e_stop="64981" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.842">
            <gDNA_intron_boundary i_start="64982" i_stop="65056" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65057" e_stop="65143" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="65144" i_stop="65784" i_length="641"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="65785" e_stop="65878" e_length="94"/>
          </exon>
          <intron i_serial="4" don_prob="0.954" acc_prob="0.981">
            <gDNA_intron_boundary i_start="65879" i_stop="67286" i_length="1408"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67287" e_stop="67343" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="67344" i_stop="67659" i_length="316"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="67660" e_stop="67739" e_length="80"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.996">
            <gDNA_intron_boundary i_start="67740" i_stop="67830" i_length="91"/>
          </intron>
          <exon e_serial="7" e_score="0.994">
            <gDNA_exon_boundary e_start="67831" e_stop="68158" e_length="328"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59865" stop="60247"/>
              <exon start="64880" stop="64981"/>
              <exon start="65057" stop="65143"/>
              <exon start="65785" stop="65878"/>
              <exon start="67287" stop="67343"/>
              <exon start="67660" stop="67739"/>
              <exon start="67831" stop="68158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326364" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTGCTCCTCCGCCGCCGCCGCCTACCTTCACCGCCGTCATCTACCACCGACTACGGTGACCAAAAAGTCACAATCTTTGAATACTCATATAGTTTCTGTAACTGGGTTTTCACTTTTTTTTTTTGTTAAGCTAATTGAATTTGAAGAGAAAAGGAGTAATGGGTAAAGGAGAGAAAAGTTCGTTAGGTAGGGCACTGGTGAAGCACCATAATCAGATGATTCAGCAATCGAAAGATAAGGGTCGAGTTTATAGGAATCATAATAAGAAGGTTCTGGAATCTGTAACTGAAGTTACTGATTTAGAAGCTGTAATAGAACAGACAGATGAAGCTCACCGTCTCTATTCTGACCTTAATCCTCCTGTTAATCTTCTCGTCAATCT : GGACTCTGGCTCTAGTTCTGGTGATATGCGACCTGAAGAAAGATTGAAGCAGCAGAAGAAAGAGGAGGCTTTGCATGCTAGTAGTCTTCGCGTTCCACGCAG : GCCCCCATGGAATACTAAAATGTCCGTGGAAGAGCTTGATATTAATGAAAGACAAGCTTTTCTAGCTTGGCGACGCAATCTTGCAAG : GCTTGAAGAGAACGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTGTTGAGCGTAGTGATCTG : CTTGTAATGGTTGTTGATGCACGTGACCCACTTTTTTATCGGTGTCCTGATCTTGAG : GCTTATGCACTAGAAGTCGACCAACACAAAAAAACAATGCTTCTTGTTAACAAAGCTGATCTTTTACCCATTTCTATCAG : AAAGAAATGGGCTGAATACTTCCACCAGCAAGGGATTCTTTTTCTTTTCTGGTCAGCTAAAGCTGCCTCTGCTGCTCTCAGTGCTTCAGAAGTACCAATGAGCTCTCAAGAGGCAGGTGATGCTGATACGAAAATATTAGGCAGGGAGGAGCTATTGGCCCGCTTACAGTCTGCAGCAGAGGAGATAGTTTTGACTAAGAATAGGTTAGCTTCTGATGCTGATGAGAACTTGGCAGAAGATGTTCAGTCTAGAAGTGTGATGGTGGGGTTTGTGGGGTATCCTAATGTTGGGAAAAGTTCAACGATTAATGCTTTGGTAGGGGAAAAA</gDNA_template>
            <first_frame> A  A  P  P  P  P  P  P  T  F  T  A  V  I  Y  H  R  L  R  *  P  K  S  H  N  L  *  I  L  I  *  F  L  *  L  G  F  H  F  F  F  L  L  S  *  L  N  L  K  R  K  G  V  M  G  K  G  E  K  S  S  L  G  R  A  L  V  K  H  H  N  Q  M  I  Q  Q  S  K  D  K  G  R  V  Y  R  N  H  N  K  K  V  L  E  S  V  T  E  V  T  D  L  E  A  V  I  E  Q  T  D  E  A  H  R  L  Y  S  D  L  N  P  P  V  N  L  L  V  N  L :   D  S  G  S  S  S  G  D  M  R  P  E  E  R  L  K  Q  Q  K  K  E  E  A  L  H  A  S  S  L  R  V  P  R  R :   P  P  W  N  T  K  M  S  V  E  E  L  D  I  N  E  R  Q  A  F  L  A  W  R  R  N  L  A  R :   L  E  E  N  E  K  L  V  L  T  P  F  E  K  N  L  D  I  W  R  Q  L  W  R  V  V  E  R  S  D  L  :  L  V  M  V  V  D  A  R  D  P  L  F  Y  R  C  P  D  L  E  :  A  Y  A  L  E  V  D  Q  H  K  K  T  M  L  L  V  N  K  A  D  L  L  P  I  S  I  R :   K  K  W  A  E  Y  F  H  Q  Q  G  I  L  F  L  F  W  S  A  K  A  A  S  A  A  L  S  A  S  E  V  P  M  S  S  Q  E  A  G  D  A  D  T  K  I  L  G  R  E  E  L  L  A  R  L  Q  S  A  A  E  E  I  V  L  T  K  N  R  L  A  S  D  A  D  E  N  L  A  E  D  V  Q  S  R  S  V  M  V  G  F  V  G  Y  P  N  V  G  K  S  S  T  I  N  A  L  V  G  E  K </first_frame>
            <second_frame>  L  L  L  R  R  R  R  L  P  S  P  P  S  S  T  T  D  Y  G  D  Q  K  V  T  I  F  E  Y  S  Y  S  F  C  N  W  V  F  T  F  F  F  C  *  A  N  *  I  *  R  E  K  E  *  W  V  K  E  R  K  V  R  *  V  G  H  W  *  S  T  I  I  R  *  F  S  N  R  K  I  R  V  E  F  I  G  I  I  I  R  R  F  W  N  L  *  L  K  L  L  I  *  K  L  *  *  N  R  Q  M  K  L  T  V  S  I  L  T  L  I  L  L  L  I  F  S  S  I   : W  T  L  A  L  V  L  V  I  C  D  L  K  K  D  *  S  S  R  R  K  R  R  L  C  M  L  V  V  F  A  F  H  A   : G  P  H  G  I  L  K  C  P  W  K  S  L  I  L  M  K  D  K  L  F  *  L  G  D  A  I  L  Q   : G  L  K  R  T  R  N  W  F  S  P  L  L  K  R  T  W  I  S  G  D  S  F  G  E  L  L  S  V  V  I  C :   L  *  W  L  L  M  H  V  T  H  F  F  I  G  V  L  I  L  R :   L  M  H  *  K  S  T  N  T  K  K  Q  C  F  L  L  T  K  L  I  F  Y  P  F  L  S   : E  R  N  G  L  N  T  S  T  S  K  G  F  F  F  F  S  G  Q  L  K  L  P  L  L  L  S  V  L  Q  K  Y  Q  *  A  L  K  R  Q  V  M  L  I  R  K  Y  *  A  G  R  S  Y  W  P  A  Y  S  L  Q  Q  R  R  *  F  *  L  R  I  G  *  L  L  M  L  M  R  T  W  Q  K  M  F  S  L  E  V  *  W  W  G  L  W  G  I  L  M  L  G  K  V  Q  R  L  M  L  W  *  G  K   </second_frame>
            <third_frame>   C  S  S  A  A  A  A  Y  L  H  R  R  H  L  P  P  T  T  V  T  K  K  S  Q  S  L  N  T  H  I  V  S  V  T  G  F  S  L  F  F  F  V  K  L  I  E  F  E  E  K  R  S  N  G  *  R  R  E  K  F  V  R  *  G  T  G  E  A  P  *  S  D  D  S  A  I  E  R  *  G  S  S  L  *  E  S  *  *  E  G  S  G  I  C  N  *  S  Y  *  F  R  S  C  N  R  T  D  R  *  S  S  P  S  L  F  *  P  *  S  S  C  *  S  S  R  Q  S  :  G  L  W  L  *  F  W  *  Y  A  T  *  R  K  I  E  A  A  E  E  R  G  G  F  A  C  *  *  S  S  R  S  T  Q  :  A  P  M  E  Y  *  N  V  R  G  R  A  *  Y  *  *  K  T  S  F  S  S  L  A  T  Q  S  C  K  :  A  *  R  E  R  E  T  G  S  H  P  F  *  K  E  P  G  Y  L  E  T  A  L  E  S  C  *  A  *  *  S   : A  C  N  G  C  *  C  T  *  P  T  F  L  S  V  S  *  S  *   : G  L  C  T  R  S  R  P  T  Q  K  N  N  A  S  C  *  Q  S  *  S  F  T  H  F  Y  Q  :  K  E  M  G  *  I  L  P  P  A  R  D  S  F  S  F  L  V  S  *  S  C  L  C  C  S  Q  C  F  R  S  T  N  E  L  S  R  G  R  *  C  *  Y  E  N  I  R  Q  G  G  A  I  G  P  L  T  V  C  S  R  G  D  S  F  D  *  E  *  V  S  F  *  C  *  *  E  L  G  R  R  C  S  V  *  K  C  D  G  G  V  C  G  V  S  *  C  W  E  K  F  N  D  *  C  F  G  R  G  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60000" stop="60247"/>
                    <exon start="64880" stop="64981"/>
                    <exon start="65057" stop="65143"/>
                    <exon start="65785" stop="65878"/>
                    <exon start="67287" stop="67343"/>
                    <exon start="67660" stop="67739"/>
                    <exon start="67831" stop="68158"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>996</number_coding_nucleotides>
                  <number_encoded_amino_acids>332</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNLKRKGVMGKGEKSSLGRALVKHHNQMIQQSKDKGRVYRNHNKKVLESVTEVTDLEAVIEQTDEAHRLYSDLNPPVNLLVNLDSGSSSGDMRPEERLKQQKKEEALHASSLRVPRRPPWNTKMSVEELDINERQAFLAWRRNLARLEENEKLVLTPFEKNLDIWRQLWRVVERSDLLVMVVDARDPLFYRCPDLEAYALEVDQHKKTMLLVNKADLLPISIRKKWAEYFHQQGILFLFWSAKAASAALSASEVPMSSQEAGDADTKILGREELLARLQSAAEEIVLTKNRLASDADENLAEDVQSRSVMVGFVGYPNVGKSSTINALVGEK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="62371" e_stop="62883"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="62371" e_stop="62883" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62371" stop="62883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342218" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTACTGGATGAGGTTGGGACTTCTTTTTTGTCAACATTTCGTAGTGTCATGGTTATATCGAAGCCAAGATCAATTCGTGGTAATTTTCTCAGGTGCAACATAGAAGAATCTTAGAGTAGAAGAACAAAATGAAAAAATGCAGAATAAGTGCCCTTTTTTTCCCCATTCGGAACAATTACCTTACTGTTCTGTTTTTTCAGCTGTGAGCCGTTCATTTTAGCTGAACTATAGAGTGAAAGGGGTTTGAATCGTTGTTACAATCATATGCATCATTTTCAATGAGGCCAAGAGGCCAAGTCTAGCACTGCTGACAACTTGTTTTGCCATGTTAAATAGTTATGGGATGGTAAAGGAAGGATTTGCTATCGCAAAAATCCATACTAAAGGAAGGAGTCCCTTTTTCCATGGCACAGCCTCAGTTGCTTTGATGGAATGCTTACATGAAAGGCTTAATTGAGTGTTGCGGGTAGAATTGCTGTATGAGGAGTCCACTTAAAATAAAAGGAAACAAAA</gDNA_template>
            <first_frame> V  L  D  E  V  G  T  S  F  L  S  T  F  R  S  V  M  V  I  S  K  P  R  S  I  R  G  N  F  L  R  C  N  I  E  E  S  *  S  R  R  T  K  *  K  N  A  E  *  V  P  F  F  S  P  F  G  T  I  T  L  L  F  C  F  F  S  C  E  P  F  I  L  A  E  L  *  S  E  R  G  L  N  R  C  Y  N  H  M  H  H  F  Q  *  G  Q  E  A  K  S  S  T  A  D  N  L  F  C  H  V  K  *  L  W  D  G  K  G  R  I  C  Y  R  K  N  P  Y  *  R  K  E  S  L  F  P  W  H  S  L  S  C  F  D  G  M  L  T  *  K  A  *  L  S  V  A  G  R  I  A  V  *  G  V  H  L  K  *  K  E  T  K </first_frame>
            <second_frame>  Y  W  M  R  L  G  L  L  F  C  Q  H  F  V  V  S  W  L  Y  R  S  Q  D  Q  F  V  V  I  F  S  G  A  T  *  K  N  L  R  V  E  E  Q  N  E  K  M  Q  N  K  C  P  F  F  P  H  S  E  Q  L  P  Y  C  S  V  F  S  A  V  S  R  S  F  *  L  N  Y  R  V  K  G  V  *  I  V  V  T  I  I  C  I  I  F  N  E  A  K  R  P  S  L  A  L  L  T  T  C  F  A  M  L  N  S  Y  G  M  V  K  E  G  F  A  I  A  K  I  H  T  K  G  R  S  P  F  F  H  G  T  A  S  V  A  L  M  E  C  L  H  E  R  L  N  *  V  L  R  V  E  L  L  Y  E  E  S  T  *  N  K  R  K  Q   </second_frame>
            <third_frame>   T  G  *  G  W  D  F  F  F  V  N  I  S  *  C  H  G  Y  I  E  A  K  I  N  S  W  *  F  S  Q  V  Q  H  R  R  I  L  E  *  K  N  K  M  K  K  C  R  I  S  A  L  F  F  P  I  R  N  N  Y  L  T  V  L  F  F  Q  L  *  A  V  H  F  S  *  T  I  E  *  K  G  F  E  S  L  L  Q  S  Y  A  S  F  S  M  R  P  R  G  Q  V  *  H  C  *  Q  L  V  L  P  C  *  I  V  M  G  W  *  R  K  D  L  L  S  Q  K  S  I  L  K  E  G  V  P  F  S  M  A  Q  P  Q  L  L  *  W  N  A  Y  M  K  G  L  I  E  C  C  G  *  N  C  C  M  R  S  P  L  K  I  K  G  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62618" stop="62827"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVVTIICIIFNEAKRPSLALLTTCFAMLNSYGMVKEGFAIAKIHTKGRSPFFHGTASVALMECLHERLN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="68355" PGL_stop="69320"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68355" e_stop="69320"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="68355" e_stop="69320" e_length="966"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68355" stop="69320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327749" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCGAGTCCCTAGAAAAACTATCGAGGATGTCTACAACATATCTCTGCCAAAACCAAAGCCATATGAGCCACAGTCTCGCCCACCTACTGCTGCAGAACTTTTAAGGGCATACTGTGCCTCTCGTGGTTATGTTGCTTCAAGCGGATTGCCCGATGAAACAAGAGCAACACGTCAGATGTTGAAGGATTATGTTGATGGAAAGCTGCCACACTTTGAAATGCCTCCAGGAGAATCAGACGATGAAGCTAGTGAAGAGGAGGATGAAATTGTTACAGAGGATGCTGATAATCCTATAATGTCTGGTTCTGATGAGGATGATGACGACGATGAGGATGAGGATGAGGATGAGGATGATGAAGACATTAATGCACATCTAGATCATGTTCTGAGTGATTTAAGTACGTTTGATATGGCCAATGGACTTGCTTCTAACCAGACAGCTCGTAAAAAGAAGCCCATAACTGCTCCCCATAAACAACATAAAAAGACACAAAGAAAGAAAGACCGGTCATGGAGAGTCCAGAACGGTGAAGGTGATGGGATGCCAGTAGTAAGAGTCTTCAGGAAAGCAGCAAACACTGGACCTGTGAACATCCGGTAGGTATCAATGGGAAGTTACACTGGCTTCTTGGCTCCCAACTCTGCTTACCTTGTCAACTGTCGTTATTTCGCCTATATATTACTGCAAGCGTTATATATTACACGCATATCTTTACAACGATGGTGCGGTATATATGCTTATTTTTCAAGTAGCACTCTCACTAAGGGAGTTGAAGAGTGAATCTTAGTTTGTTTAAAACCATCTGGATTAATGTTGTTCTGATCTTCTGTTGCCAATGATTCTTCTTTGAACAAGAAGATGTAGTAGAAAATTTGTGTATGAAATTGCCTTTAATGGGAAGTGTTATATTTTCAGGTGAGATTTTTCAGCATAAATATGAATTAATTGTTTTTGATATTTTTTT</gDNA_template>
            <first_frame> I  E  S  L  E  K  L  S  R  M  S  T  T  Y  L  C  Q  N  Q  S  H  M  S  H  S  L  A  H  L  L  L  Q  N  F  *  G  H  T  V  P  L  V  V  M  L  L  Q  A  D  C  P  M  K  Q  E  Q  H  V  R  C  *  R  I  M  L  M  E  S  C  H  T  L  K  C  L  Q  E  N  Q  T  M  K  L  V  K  R  R  M  K  L  L  Q  R  M  L  I  I  L  *  C  L  V  L  M  R  M  M  T  T  M  R  M  R  M  R  M  R  M  M  K  T  L  M  H  I  *  I  M  F  *  V  I  *  V  R  L  I  W  P  M  D  L  L  L  T  R  Q  L  V  K  R  S  P  *  L  L  P  I  N  N  I  K  R  H  K  E  R  K  T  G  H  G  E  S  R  T  V  K  V  M  G  C  Q  *  *  E  S  S  G  K  Q  Q  T  L  D  L  *  T  S  G  R  Y  Q  W  E  V  T  L  A  S  W  L  P  T  L  L  T  L  S  T  V  V  I  S  P  I  Y  Y  C  K  R  Y  I  L  H  A  Y  L  Y  N  D  G  A  V  Y  M  L  I  F  Q  V  A  L  S  L  R  E  L  K  S  E  S  *  F  V  *  N  H  L  D  *  C  C  S  D  L  L  L  P  M  I  L  L  *  T  R  R  C  S  R  K  F  V  Y  E  I  A  F  N  G  K  C  Y  I  F  R  *  D  F  S  A  *  I  *  I  N  C  F  *  Y  F  F </first_frame>
            <second_frame>  S  S  P  *  K  N  Y  R  G  C  L  Q  H  I  S  A  K  T  K  A  I  *  A  T  V  S  P  T  Y  C  C  R  T  F  K  G  I  L  C  L  S  W  L  C  C  F  K  R  I  A  R  *  N  K  S  N  T  S  D  V  E  G  L  C  *  W  K  A  A  T  L  *  N  A  S  R  R  I  R  R  *  S  *  *  R  G  G  *  N  C  Y  R  G  C  *  *  S  Y  N  V  W  F  *  *  G  *  *  R  R  *  G  *  G  *  G  *  G  *  *  R  H  *  C  T  S  R  S  C  S  E  *  F  K  Y  V  *  Y  G  Q  W  T  C  F  *  P  D  S  S  *  K  E  A  H  N  C  S  P  *  T  T  *  K  D  T  K  K  E  R  P  V  M  E  S  P  E  R  *  R  *  W  D  A  S  S  K  S  L  Q  E  S  S  K  H  W  T  C  E  H  P  V  G  I  N  G  K  L  H  W  L  L  G  S  Q  L  C  L  P  C  Q  L  S  L  F  R  L  Y  I  T  A  S  V  I  Y  Y  T  H  I  F  T  T  M  V  R  Y  I  C  L  F  F  K  *  H  S  H  *  G  S  *  R  V  N  L  S  L  F  K  T  I  W  I  N  V  V  L  I  F  C  C  Q  *  F  F  F  E  Q  E  D  V  V  E  N  L  C  M  K  L  P  L  M  G  S  V  I  F  S  G  E  I  F  Q  H  K  Y  E  L  I  V  F  D  I  F   </second_frame>
            <third_frame>   R  V  P  R  K  T  I  E  D  V  Y  N  I  S  L  P  K  P  K  P  Y  E  P  Q  S  R  P  P  T  A  A  E  L  L  R  A  Y  C  A  S  R  G  Y  V  A  S  S  G  L  P  D  E  T  R  A  T  R  Q  M  L  K  D  Y  V  D  G  K  L  P  H  F  E  M  P  P  G  E  S  D  D  E  A  S  E  E  E  D  E  I  V  T  E  D  A  D  N  P  I  M  S  G  S  D  E  D  D  D  D  D  E  D  E  D  E  D  E  D  D  E  D  I  N  A  H  L  D  H  V  L  S  D  L  S  T  F  D  M  A  N  G  L  A  S  N  Q  T  A  R  K  K  K  P  I  T  A  P  H  K  Q  H  K  K  T  Q  R  K  K  D  R  S  W  R  V  Q  N  G  E  G  D  G  M  P  V  V  R  V  F  R  K  A  A  N  T  G  P  V  N  I  R  *  V  S  M  G  S  Y  T  G  F  L  A  P  N  S  A  Y  L  V  N  C  R  Y  F  A  Y  I  L  L  Q  A  L  Y  I  T  R  I  S  L  Q  R  W  C  G  I  Y  A  Y  F  S  S  S  T  L  T  K  G  V  E  E  *  I  L  V  C  L  K  P  S  G  L  M  L  F  *  S  S  V  A  N  D  S  S  L  N  K  K  M  *  *  K  I  C  V  *  N  C  L  *  W  E  V  L  Y  F  Q  V  R  F  F  S  I  N  M  N  *  L  F  L  I  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68357" stop="68956"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVPRKTIEDVYNISLPKPKPYEPQSRPPTAAELLRAYCASRGYVASSGLPDETRATRQMLKDYVDGKLPHFEMPPGESDDEASEEEDEIVTEDADNPIMSGSDEDDDDDEDEDEDEDDEDINAHLDHVLSDLSTFDMANGLASNQTARKKKPITAPHKQHKKTQRKKDRSWRVQNGEGDGMPVVRVFRKAANTGPVNIR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68946" stop="69143"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSGRYQWEVTLASWLPTLLTLSTVVISPIYYCKRYILHAYLYNDGAVYMLIFQVALSLRELKSES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="71385" PGL_stop="81087"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76996" e_stop="77069"/>
            <exon e_start="78888" e_stop="78972"/>
            <exon e_start="79058" e_stop="79156"/>
            <exon e_start="79233" e_stop="79432"/>
            <exon e_start="79509" e_stop="79584"/>
            <exon e_start="80222" e_stop="80357"/>
            <exon e_start="80447" e_stop="80583"/>
            <exon e_start="80665" e_stop="81087"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.844" acc_prob="0.904" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76996" e_stop="77069" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="77070" i_stop="78887" i_length="1818"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78888" e_stop="78972" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.823">
            <gDNA_intron_boundary i_start="78973" i_stop="79057" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79058" e_stop="79156" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.940" acc_prob="0.892">
            <gDNA_intron_boundary i_start="79157" i_stop="79232" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79233" e_stop="79432" e_length="200"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="79433" i_stop="79508" i_length="76"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79509" e_stop="79584" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.983">
            <gDNA_intron_boundary i_start="79585" i_stop="80221" i_length="637"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="80222" e_stop="80357" e_length="136"/>
          </exon>
          <intron i_serial="6" don_prob="0.844" acc_prob="0.904">
            <gDNA_intron_boundary i_start="80358" i_stop="80446" i_length="89"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="80447" e_stop="80583" e_length="137"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="80584" i_stop="80664" i_length="81"/>
          </intron>
          <exon e_serial="8" e_score="0.974">
            <gDNA_exon_boundary e_start="80665" e_stop="81087" e_length="423"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76996" stop="77069"/>
              <exon start="78888" stop="78972"/>
              <exon start="79058" stop="79156"/>
              <exon start="79233" stop="79432"/>
              <exon start="79509" stop="79584"/>
              <exon start="80222" stop="80357"/>
              <exon start="80447" stop="80583"/>
              <exon start="80665" stop="80806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80490" stop="80583"/>
              <exon start="80665" stop="81087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336300" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTACATGGGCAATTTGGGGATCTCATGCGTCTTTTTGACGAGTATGGTTCCCCGTCAACTGCTGGGGATATTGC : GTATATTGATTACCTCTTCTTGGGAGATTATGTTGATAGGGGCCAGCACAGCTTGGAGACCATTACCCTTCTCCTTGCATTAAAG : GTCGAGTATCCTTACAATATACATTTAATACGTGGGAACCATGAAGCTTCAGATATAAATGCGCTCTTTGGCTTTCGAATTGAGTGCATTGAACGCCTG : GGTGAGAGAGATGGAATCTGGGCATGGCATCGGATTAATAGATTGTTTAACTGGCTTCCTCTGGCTGCCCTGATCGAGAAAAAAATCATCTGTATGCATGGTGGGATTGGAAGGTCCATTAATCACGTTGAGCAAATAGAGAGTATCCAGCGTCCTATCACTATGGAAGCTGGCTCAATCGTTCTGATGGATTTGTTGTG : GTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAGGCCCTGGCTTGGTAACTTTTGGG : CCCGATCGTGTGATGGAGTTTTGCAACAACAATGATCTTCAACTAATAGTCCGAGCCCACGAATGCGTGATGGATGGCTTTGAAAGATTTGCTCAGGGGCATTTGATTACGCTTTTTTCAGCCACCAATTACTGCG : GTACTGCTAACAATGCTGGTGCCATTTTAGTACTGGGTAGAGATCTTGTTGTGGTTCCAAAACTTATCCACCCAATTCCGCCAGTTTCATCGCCTGAAAATTCACCTGAACGGCATATAGAAGACACTTGGATGCAG : GAGTTAAATGCTAACAGACCCCCTACACCAACCAGAGGCCGTCCCCAAGTTGCGAACGATCGAGGTTCTTTTGCTTGGACTTAGATTCTTTTCCTATACTTTGAGCTTCATGCTCTTAACATCTGGGATTTCCAGTGATATGTACATAGGCATGAAGCCATTTGTGGAGACAAATATATCCCTCTTTGAAGATCTATAAGGCTTTTTGAGGCACTCAGTACAATACACAACAACAGCCCTTCAGACAGATTGCAGGCACAGAAGCAGTCAAAAGTTTCCCATTGTACATTGACAAACAAAATCATATCATCATGTATTACTAGAAGTGGGAACAAAAAAAAAAAGTTAACGGTTTTACCCCTATTAAATTATTTTTTATAAAAAATTAGTTAATTAAATAATTACATGTTTCTAAAAAATTTA</gDNA_template>
            <first_frame> L  H  G  Q  F  G  D  L  M  R  L  F  D  E  Y  G  S  P  S  T  A  G  D  I  A :   Y  I  D  Y  L  F  L  G  D  Y  V  D  R  G  Q  H  S  L  E  T  I  T  L  L  L  A  L  K  :  V  E  Y  P  Y  N  I  H  L  I  R  G  N  H  E  A  S  D  I  N  A  L  F  G  F  R  I  E  C  I  E  R  L  :  G  E  R  D  G  I  W  A  W  H  R  I  N  R  L  F  N  W  L  P  L  A  A  L  I  E  K  K  I  I  C  M  H  G  G  I  G  R  S  I  N  H  V  E  Q  I  E  S  I  Q  R  P  I  T  M  E  A  G  S  I  V  L  M  D  L  L  W :   S  D  P  T  E  N  D  S  V  E  G  L  R  P  N  A  R  G  P  G  L  V  T  F  G  :  P  D  R  V  M  E  F  C  N  N  N  D  L  Q  L  I  V  R  A  H  E  C  V  M  D  G  F  E  R  F  A  Q  G  H  L  I  T  L  F  S  A  T  N  Y  C   : G  T  A  N  N  A  G  A  I  L  V  L  G  R  D  L  V  V  V  P  K  L  I  H  P  I  P  P  V  S  S  P  E  N  S  P  E  R  H  I  E  D  T  W  M  Q  :  E  L  N  A  N  R  P  P  T  P  T  R  G  R  P  Q  V  A  N  D  R  G  S  F  A  W  T  *  I  L  F  L  Y  F  E  L  H  A  L  N  I  W  D  F  Q  *  Y  V  H  R  H  E  A  I  C  G  D  K  Y  I  P  L  *  R  S  I  R  L  F  E  A  L  S  T  I  H  N  N  S  P  S  D  R  L  Q  A  Q  K  Q  S  K  V  S  H  C  T  L  T  N  K  I  I  S  S  C  I  T  R  S  G  N  K  K  K  K  L  T  V  L  P  L  L  N  Y  F  L  *  K  I  S  *  L  N  N  Y  M  F  L  K  N  L </first_frame>
            <second_frame>  Y  M  G  N  L  G  I  S  C  V  F  L  T  S  M  V  P  R  Q  L  L  G  I  L   : R  I  L  I  T  S  S  W  E  I  M  L  I  G  A  S  T  A  W  R  P  L  P  F  S  L  H  *  R :   S  S  I  L  T  I  Y  I  *  Y  V  G  T  M  K  L  Q  I  *  M  R  S  L  A  F  E  L  S  A  L  N  A  W :   V  R  E  M  E  S  G  H  G  I  G  L  I  D  C  L  T  G  F  L  W  L  P  *  S  R  K  K  S  S  V  C  M  V  G  L  E  G  P  L  I  T  L  S  K  *  R  V  S  S  V  L  S  L  W  K  L  A  Q  S  F  *  W  I  C  C   : G  L  T  Q  Q  K  M  I  V  L  K  D  *  D  Q  M  Q  E  A  L  A  W  *  L  L  G :   P  I  V  *  W  S  F  A  T  T  M  I  F  N  *  *  S  E  P  T  N  A  *  W  M  A  L  K  D  L  L  R  G  I  *  L  R  F  F  Q  P  P  I  T  A  :  V  L  L  T  M  L  V  P  F  *  Y  W  V  E  I  L  L  W  F  Q  N  L  S  T  Q  F  R  Q  F  H  R  L  K  I  H  L  N  G  I  *  K  T  L  G  C  R :   S  *  M  L  T  D  P  L  H  Q  P  E  A  V  P  K  L  R  T  I  E  V  L  L  L  G  L  R  F  F  S  Y  T  L  S  F  M  L  L  T  S  G  I  S  S  D  M  Y  I  G  M  K  P  F  V  E  T  N  I  S  L  F  E  D  L  *  G  F  L  R  H  S  V  Q  Y  T  T  T  A  L  Q  T  D  C  R  H  R  S  S  Q  K  F  P  I  V  H  *  Q  T  K  S  Y  H  H  V  L  L  E  V  G  T  K  K  K  S  *  R  F  Y  P  Y  *  I  I  F  Y  K  K  L  V  N  *  I  I  T  C  F  *  K  I   </second_frame>
            <third_frame>   T  W  A  I  W  G  S  H  A  S  F  *  R  V  W  F  P  V  N  C  W  G  Y  C  :  V  Y  *  L  P  L  L  G  R  L  C  *  *  G  P  A  Q  L  G  D  H  Y  P  S  P  C  I  K   : G  R  V  S  L  Q  Y  T  F  N  T  W  E  P  *  S  F  R  Y  K  C  A  L  W  L  S  N  *  V  H  *  T  P   : G  *  E  R  W  N  L  G  M  A  S  D  *  *  I  V  *  L  A  S  S  G  C  P  D  R  E  K  N  H  L  Y  A  W  W  D  W  K  V  H  *  S  R  *  A  N  R  E  Y  P  A  S  Y  H  Y  G  S  W  L  N  R  S  D  G  F  V  V  :  V  *  P  N  R  K  *  *  C  *  R  T  K  T  K  C  K  R  P  W  L  G  N  F  W   : A  R  S  C  D  G  V  L  Q  Q  Q  *  S  S  T  N  S  P  S  P  R  M  R  D  G  W  L  *  K  I  C  S  G  A  F  D  Y  A  F  F  S  H  Q  L  L  R :   Y  C  *  Q  C  W  C  H  F  S  T  G  *  R  S  C  C  G  S  K  T  Y  P  P  N  S  A  S  F  I  A  *  K  F  T  *  T  A  Y  R  R  H  L  D  A   : G  V  K  C  *  Q  T  P  Y  T  N  Q  R  P  S  P  S  C  E  R  S  R  F  F  C  L  D  L  D  S  F  P  I  L  *  A  S  C  S  *  H  L  G  F  P  V  I  C  T  *  A  *  S  H  L  W  R  Q  I  Y  P  S  L  K  I  Y  K  A  F  *  G  T  Q  Y  N  T  Q  Q  Q  P  F  R  Q  I  A  G  T  E  A  V  K  S  F  P  L  Y  I  D  K  Q  N  H  I  I  M  Y  Y  *  K  W  E  Q  K  K  K  V  N  G  F  T  P  I  K  L  F  F  I  K  N  *  L  I  K  *  L  H  V  S  K  K  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76996" stop="77069"/>
                    <exon start="78888" stop="78972"/>
                    <exon start="79058" stop="79156"/>
                    <exon start="79233" stop="79432"/>
                    <exon start="79509" stop="79584"/>
                    <exon start="80222" stop="80357"/>
                    <exon start="80447" stop="80583"/>
                    <exon start="80665" stop="80748"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>888</number_coding_nucleotides>
                  <number_encoded_amino_acids>296</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPYNIHLIRGNHEASDINALFGFRIECIERLGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIESIQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPIPPVSSPENSPERHIEDTWMQELNANRPPTPTRGRPQVANDRGSFAWT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="71385" e_stop="71808"/>
            <exon e_start="72425" e_stop="72470"/>
            <exon e_start="80282" e_stop="80357"/>
            <exon e_start="80447" e_stop="80583"/>
            <exon e_start="80665" e_stop="81087"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.345" acc_prob="0.999" e_score="0.991"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.844" acc_prob="0.904" e_score="0.947"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="0.985"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="71385" e_stop="71808" e_length="424"/>
          </exon>
          <intron i_serial="1" don_prob="0.345" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71809" i_stop="72424" i_length="616"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72425" e_stop="72470" e_length="46"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="72471" i_stop="80281" i_length="7811"/>
          </intron>
          <exon e_serial="3" e_score="0.947">
            <gDNA_exon_boundary e_start="80282" e_stop="80357" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.844" acc_prob="0.904">
            <gDNA_intron_boundary i_start="80358" i_stop="80446" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="80447" e_stop="80583" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="80584" i_stop="80664" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="0.974">
            <gDNA_exon_boundary e_start="80665" e_stop="81087" e_length="423"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71385" stop="71808"/>
              <exon start="72425" stop="72470"/>
              <exon start="80282" stop="80357"/>
              <exon start="80447" stop="80583"/>
              <exon start="80665" stop="80727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80490" stop="80583"/>
              <exon start="80665" stop="81087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336300" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTAGAGTATTGATATGGATGTGGATTCAACTATGGTATCGGAGTCCGATCACGATCCGACTGTTCAGAATGATAGTTCGACGTCGGAACAACAGCTTAATGATGAGTCTTCAACTTCGTTGCAGCAGCAAAGTTCACAAACTCAGCAACAGCAGCAGCAAAGTAGTAGTAGTAGTAGTGTTCCTGCTGTTGCGGGACCAAGGTGTGCTCCGACGTATTCGGTGGTGCACGAAGTGATAGAGAAGAAGGAAGATGGTCCAGGGCCAAGGTGTGGGCATACGTTAACGGCTGTACCAGCTGTTGGTGAAGAAGGTTCTCCTAATTATATTGGTCCAAGGCTTATTCTTTTTGGTGGTGCTACTGCTCTTGAGGGAAATTCTGCTGCTTCTGGAACCCCGTCATCTGCTGGAAGTGCTGGAATTC : GCTTAGCAGGGGCTACTGCTGATGTGCACTGTTATGATGTTTTCAC : GAATGCGTGATGGATGGCTTTGAAAGATTTGCTCAGGGGCATTTGATTACGCTTTTTTCAGCCACCAATTACTGCG : GTACTGCTAACAATGCTGGTGCCATTTTAGTACTGGGTAGAGATCTTGTTGTGGTTCCAAAACTTATCCACCCAATTCCGCCAGTTTCATCGCCTGAAAATTCACCTGAACGGCATATAGAAGACACTTGGATGCAG : GAGTTAAATGCTAACAGACCCCCTACACCAACCAGAGGCCGTCCCCAAGTTGCGAACGATCGAGGTTCTTTTGCTTGGACTTAGATTCTTTTCCTATACTTTGAGCTTCATGCTCTTAACATCTGGGATTTCCAGTGATATGTACATAGGCATGAAGCCATTTGTGGAGACAAATATATCCCTCTTTGAAGATCTATAAGGCTTTTTGAGGCACTCAGTACAATACACAACAACAGCCCTTCAGACAGATTGCAGGCACAGAAGCAGTCAAAAGTTTCCCATTGTACATTGACAAACAAAATCATATCATCATGTATTACTAGAAGTGGGAACAAAAAAAAAAAGTTAACGGTTTTACCCCTATTAAATTATTTTTTATAAAAAATTAGTTAATTAAATAATTACATGTTTCTAAAAAATTTA</gDNA_template>
            <first_frame> Y  *  S  I  D  M  D  V  D  S  T  M  V  S  E  S  D  H  D  P  T  V  Q  N  D  S  S  T  S  E  Q  Q  L  N  D  E  S  S  T  S  L  Q  Q  Q  S  S  Q  T  Q  Q  Q  Q  Q  Q  S  S  S  S  S  S  V  P  A  V  A  G  P  R  C  A  P  T  Y  S  V  V  H  E  V  I  E  K  K  E  D  G  P  G  P  R  C  G  H  T  L  T  A  V  P  A  V  G  E  E  G  S  P  N  Y  I  G  P  R  L  I  L  F  G  G  A  T  A  L  E  G  N  S  A  A  S  G  T  P  S  S  A  G  S  A  G  I   : R  L  A  G  A  T  A  D  V  H  C  Y  D  V  F  T :   N  A  *  W  M  A  L  K  D  L  L  R  G  I  *  L  R  F  F  Q  P  P  I  T  A  :  V  L  L  T  M  L  V  P  F  *  Y  W  V  E  I  L  L  W  F  Q  N  L  S  T  Q  F  R  Q  F  H  R  L  K  I  H  L  N  G  I  *  K  T  L  G  C  R :   S  *  M  L  T  D  P  L  H  Q  P  E  A  V  P  K  L  R  T  I  E  V  L  L  L  G  L  R  F  F  S  Y  T  L  S  F  M  L  L  T  S  G  I  S  S  D  M  Y  I  G  M  K  P  F  V  E  T  N  I  S  L  F  E  D  L  *  G  F  L  R  H  S  V  Q  Y  T  T  T  A  L  Q  T  D  C  R  H  R  S  S  Q  K  F  P  I  V  H  *  Q  T  K  S  Y  H  H  V  L  L  E  V  G  T  K  K  K  S  *  R  F  Y  P  Y  *  I  I  F  Y  K  K  L  V  N  *  I  I  T  C  F  *  K  I   </first_frame>
            <second_frame>  I  R  V  L  I  W  M  W  I  Q  L  W  Y  R  S  P  I  T  I  R  L  F  R  M  I  V  R  R  R  N  N  S  L  M  M  S  L  Q  L  R  C  S  S  K  V  H  K  L  S  N  S  S  S  K  V  V  V  V  V  V  F  L  L  L  R  D  Q  G  V  L  R  R  I  R  W  C  T  K  *  *  R  R  R  K  M  V  Q  G  Q  G  V  G  I  R  *  R  L  Y  Q  L  L  V  K  K  V  L  L  I  I  L  V  Q  G  L  F  F  L  V  V  L  L  L  L  R  E  I  L  L  L  L  E  P  R  H  L  L  E  V  L  E  F  :  A  *  Q  G  L  L  L  M  C  T  V  M  M  F  S   : R  M  R  D  G  W  L  *  K  I  C  S  G  A  F  D  Y  A  F  F  S  H  Q  L  L  R :   Y  C  *  Q  C  W  C  H  F  S  T  G  *  R  S  C  C  G  S  K  T  Y  P  P  N  S  A  S  F  I  A  *  K  F  T  *  T  A  Y  R  R  H  L  D  A   : G  V  K  C  *  Q  T  P  Y  T  N  Q  R  P  S  P  S  C  E  R  S  R  F  F  C  L  D  L  D  S  F  P  I  L  *  A  S  C  S  *  H  L  G  F  P  V  I  C  T  *  A  *  S  H  L  W  R  Q  I  Y  P  S  L  K  I  Y  K  A  F  *  G  T  Q  Y  N  T  Q  Q  Q  P  F  R  Q  I  A  G  T  E  A  V  K  S  F  P  L  Y  I  D  K  Q  N  H  I  I  M  Y  Y  *  K  W  E  Q  K  K  K  V  N  G  F  T  P  I  K  L  F  F  I  K  N  *  L  I  K  *  L  H  V  S  K  K  F  </second_frame>
            <third_frame>   L  E  Y  *  Y  G  C  G  F  N  Y  G  I  G  V  R  S  R  S  D  C  S  E  *  *  F  D  V  G  T  T  A  *  *  *  V  F  N  F  V  A  A  A  K  F  T  N  S  A  T  A  A  A  K  *  *  *  *  *  C  S  C  C  C  G  T  K  V  C  S  D  V  F  G  G  A  R  S  D  R  E  E  G  R  W  S  R  A  K  V  W  A  Y  V  N  G  C  T  S  C  W  *  R  R  F  S  *  L  Y  W  S  K  A  Y  S  F  W  W  C  Y  C  S  *  G  K  F  C  C  F  W  N  P  V  I  C  W  K  C  W  N  S :   L  S  R  G  Y  C  *  C  A  L  L  *  C  F  H  :  E  C  V  M  D  G  F  E  R  F  A  Q  G  H  L  I  T  L  F  S  A  T  N  Y  C   : G  T  A  N  N  A  G  A  I  L  V  L  G  R  D  L  V  V  V  P  K  L  I  H  P  I  P  P  V  S  S  P  E  N  S  P  E  R  H  I  E  D  T  W  M  Q  :  E  L  N  A  N  R  P  P  T  P  T  R  G  R  P  Q  V  A  N  D  R  G  S  F  A  W  T  *  I  L  F  L  Y  F  E  L  H  A  L  N  I  W  D  F  Q  *  Y  V  H  R  H  E  A  I  C  G  D  K  Y  I  P  L  *  R  S  I  R  L  F  E  A  L  S  T  I  H  N  N  S  P  S  D  R  L  Q  A  Q  K  Q  S  K  V  S  H  C  T  L  T  N  K  I  I  S  S  C  I  T  R  S  G  N  K  K  K  K  L  T  V  L  P  L  L  N  Y  F  L  *  K  I  S  *  L  N  N  Y  M  F  L  K  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71391" stop="71808"/>
                    <exon start="72425" stop="72470"/>
                    <exon start="80282" stop="80291"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIDMDVDSTMVSESDHDPTVQNDSSTSEQQLNDESSTSLQQQSSQTQQQQQQSSSSSSVPAVAGPRCAPTYSVVHEVIEKKEDGPGPRCGHTLTAVPAVGEEGSPNYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVFTNA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72462" stop="72470"/>
                    <exon start="80282" stop="80357"/>
                    <exon start="80447" stop="80583"/>
                    <exon start="80665" stop="80748"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPIPPVSSPENSPERHIEDTWMQELNANRPPTPTRGRPQVANDRGSFAWT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="88328" PGL_stop="80475"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88328" e_stop="88207"/>
            <exon e_start="87219" e_stop="87129"/>
            <exon e_start="87039" e_stop="86979"/>
            <exon e_start="85306" e_stop="85229"/>
            <exon e_start="84204" e_stop="84131"/>
            <exon e_start="83711" e_stop="83598"/>
            <exon e_start="83520" e_stop="83413"/>
            <exon e_start="82272" e_stop="82234"/>
            <exon e_start="82111" e_stop="81740"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.867" e_score="1.000"/>
          <exon-intron don_prob="0.817" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.806" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.907" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88328" e_stop="88207" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.867">
            <gDNA_intron_boundary i_start="88206" i_stop="87220" i_length="987"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87219" e_stop="87129" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.817" acc_prob="0.997">
            <gDNA_intron_boundary i_start="87128" i_stop="87040" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87039" e_stop="86979" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.806" acc_prob="0.999">
            <gDNA_intron_boundary i_start="86978" i_stop="85307" i_length="1672"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85306" e_stop="85229" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.000">
            <gDNA_intron_boundary i_start="85228" i_stop="84205" i_length="1024"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84204" e_stop="84131" e_length="74"/>
          </exon>
          <intron i_serial="5" don_prob="0.966" acc_prob="0.985">
            <gDNA_intron_boundary i_start="84130" i_stop="83712" i_length="419"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="83711" e_stop="83598" e_length="114"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="83597" i_stop="83521" i_length="77"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="83520" e_stop="83413" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83412" i_stop="82273" i_length="1140"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="82272" e_stop="82234" e_length="39"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.907">
            <gDNA_intron_boundary i_start="82233" i_stop="82112" i_length="122"/>
          </intron>
          <exon e_serial="9" e_score="0.989">
            <gDNA_exon_boundary e_start="82111" e_stop="81740" e_length="372"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88328" stop="88207"/>
              <exon start="87219" stop="87129"/>
              <exon start="87039" stop="86979"/>
              <exon start="85306" stop="85229"/>
              <exon start="84204" stop="84131"/>
              <exon start="83711" stop="83598"/>
              <exon start="83520" stop="83413"/>
              <exon start="82272" stop="82234"/>
              <exon start="82111" stop="81740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313016" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAG : GATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAG : TTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCG : CTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAATGCAGCAAAAG : AAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAG : GGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTGAAAGAAATTTTAACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGAGG : ATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACTAGAGAAAACAGG : GTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAG : GTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTTTAGATGTATATTTAGCTAGACAAGTACATTCATATATTTCATTTGACACAGATTTCTGTTTATGAACTGAATCTTGATAGGATTATTTGTGATATGTTATATGCTAATATGCATATACGACGGGTGACTATTGTGGAGTTTTATATATGAAACTTGATCCCTTTATATACATAAA</gDNA_template>
            <first_frame> G  D  N  S  D  T  A  T  A  P  S  P  A  K  I  A  A  Q  E  D  A  L  L  K  Q  F  F  A  E  V  S  E  V  E  R  D  N  E  V  N  R :   I  L  S  C  F  K  L  N  P  F  D  Y  L  N  L  S  F  D  S  S  I  D  E  V  K  R  Q  Y  R  K  :  L  S  L  L  V  H  P  D  K  C  K  H  P  Q  A  K  E  A  F  G   : A  L  A  K  A  Q  Q  L  L  L  D  P  Q  E  R  D  Y  I  L  N  Q  V  N  A  A  K   : E  E  L  R  A  Q  W  K  K  Q  L  K  K  D  T  A  S  K  L  K  S  L  V  T  E  :  G  K  F  D  Q  E  H  E  Q  S  E  E  F  Q  H  K  L  K  L  K  V  K  E  I  L  T  D  Q  E  W  R  R  R  K  M  A  M  R  :  I  S  E  E  E  G  R  L  K  K  D  E  E  E  T  K  E  L  W  K  R  K  R  E  H  E  E  Q  W  E  G  T  R  E  N  R  :  V  S  S  W  R  D  F  M  K  G  G  K  K  :  V  K  K  G  E  I  R  P  P  K  L  K  T  E  D  P  N  K  S  Y  V  Q  R  P  V  K  R  G  *  N  T  C  T  S  T  S  F  V  S  V  I  F  K  A  C  I  N  L  Y  P  *  L  T  *  L  F  C  S  K  I  Y  L  A  P  Y  F  R  C  I  F  S  *  T  S  T  F  I  Y  F  I  *  H  R  F  L  F  M  N  *  I  L  I  G  L  F  V  I  C  Y  M  L  I  C  I  Y  D  G  *  L  L  W  S  F  I  Y  E  T  *  S  L  Y  I  H  K </first_frame>
            <second_frame>  E  T  T  A  I  Q  P  P  H  R  R  R  R  K  S  P  P  R  K  M  R  Y  *  S  N  S  S  L  R  S  V  K  L  S  A  I  M  K  L  T   : G  S  F  H  V  S  S  *  I  H  L  I  I  L  T  C  H  S  I  H  P  L  M  K  S  K  D  S  I  V  S :   Y  L  C  L  F  T  L  T  S  A  S  I  H  K  Q  R  R  H  L  A  :  L  *  Q  K  P  S  N  Y  Y  L  T  L  R  R  G  I  I  F  *  T  R  L  M  Q  Q  K  :  K  S  *  E  H  S  G  R  S  S  L  R  K  I  L  L  V  N  *  N  H  *  L  L  R :   E  S  S  T  K  S  M  S  N  Q  K  N  S  S  I  S  *  S  *  R  *  K  K  F  *  R  T  K  N  G  G  G  E  K  W  Q  *  G :   Y  R  K  R  K  V  A  *  R  K  M  R  K  K  Q  K  S  C  G  K  E  S  V  S  M  K  S  S  G  K  E  L  E  K  T  G :   C  P  V  G  E  I  S  *  R  E  E  R  R :   L  R  K  E  K  F  D  L  Q  S  *  K  Q  K  I  P  I  N  L  T  F  N  D  L  *  N  E  A  K  T  H  V  R  Q  L  V  L  F  Q  *  Y  L  K  L  V  S  I  C  I  R  S  *  L  N  Y  S  A  A  K  Y  I  *  R  P  I  L  D  V  Y  L  A  R  Q  V  H  S  Y  I  S  F  D  T  D  F  C  L  *  T  E  S  *  *  D  Y  L  *  Y  V  I  C  *  Y  A  Y  T  T  G  D  Y  C  G  V  L  Y  M  K  L  D  P  F  I  Y  I   </second_frame>
            <third_frame>   R  Q  Q  R  Y  S  H  R  T  V  A  G  E  N  R  R  P  G  R  C  A  T  E  A  I  L  R  *  G  Q  *  S  *  A  R  *  *  S  *  Q  :  D  P  F  M  F  Q  V  E  S  I  *  L  S  *  L  V  I  R  F  I  H  *  *  S  Q  K  T  V  S  *   : V  I  F  A  C  S  P  *  Q  V  Q  A  S  T  S  K  G  G  I  W  R :   F  S  K  S  P  A  I  I  T  *  P  S  G  E  G  L  Y  S  E  P  G  *  C  S  K  R :   R  A  E  S  T  V  E  E  A  A  *  E  R  Y  C  *  *  I  E  I  I  S  Y  *   : G  K  V  R  P  R  A  *  A  I  R  R  I  P  A  *  A  E  V  E  G  E  R  N  F  N  G  P  R  M  E  E  E  K  N  G  N  E   : D  I  G  R  G  R  S  L  E  E  R  *  G  R  N  K  R  V  V  E  K  K  A  *  A  *  R  A  V  G  R  N  *  R  K  Q   : G  V  Q  L  E  R  F  H  E  G  R  K  E   : G  *  E  R  R  N  S  T  S  K  V  E  N  R  R  S  Q  *  I  L  R  S  T  T  C  E  T  R  L  K  H  M  Y  V  N  *  F  C  F  S  D  I  *  S  L  Y  Q  F  V  S  V  A  N  L  I  I  L  Q  Q  N  I  F  S  A  L  F  *  M  Y  I  *  L  D  K  Y  I  H  I  F  H  L  T  Q  I  S  V  Y  E  L  N  L  D  R  I  I  C  D  M  L  Y  A  N  M  H  I  R  R  V  T  I  V  E  F  Y  I  *  N  L  I  P  L  Y  T  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88328" stop="88207"/>
                    <exon start="87219" stop="87129"/>
                    <exon start="87039" stop="86979"/>
                    <exon start="85306" stop="85229"/>
                    <exon start="84204" stop="84131"/>
                    <exon start="83711" stop="83598"/>
                    <exon start="83520" stop="83413"/>
                    <exon start="82272" stop="82234"/>
                    <exon start="82111" stop="82025"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GDNSDTATAPSPAKIAAQEDALLKQFFAEVSEVERDNEVNRILSCFKLNPFDYLNLSFDSSIDEVKRQYRKLSLLVHPDKCKHPQAKEAFGALAKAQQLLLDPQERDYILNQVNAAKEELRAQWKKQLKKDTASKLKSLVTEGKFDQEHEQSEEFQHKLKLKVKEILTDQEWRRRKMAMRISEEEGRLKKDEEETKELWKRKREHEEQWEGTRENRVSSWRDFMKGGKKVKKGEIRPPKLKTEDPNKSYVQRPVKRG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="82578" e_stop="82234"/>
            <exon e_start="82111" e_stop="81763"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.907" e_score="1.000"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82578" e_stop="82234" e_length="345"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.907">
            <gDNA_intron_boundary i_start="82233" i_stop="82112" i_length="122"/>
          </intron>
          <exon e_serial="2" e_score="0.963">
            <gDNA_exon_boundary e_start="82111" e_stop="81763" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82578" stop="82234"/>
              <exon start="82111" stop="81763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313014" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGATTTGTGCCAACTGCTGCGCAAGATTCATTAAATGGAGATGTGTTCTCTACCAGAACTTTTTCCATTTTCAGGTCTCAATGCTGAGACTTCTGGTTAAAGATGGAGGAATTCTAACCATCCGACCACAATCCCGGGTGACAAACATGATAATATTATTGAACCTAAGGTCTTCAGAACATGATAATTGTTATGAACCTAATCTTCATGATGATATGAAATTGTAAAGTTGAAGACAACCGACATGTTCCAAAATCTAGACTTACTGAATTGAGTTTCTAAAACTTTTCTTCTATTTCTCATCAGGTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAG : GTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTTTAGATGTATATTTAGCTAGACAAGTACATTCATATATTTCATTTGACACAGATTTCTGTTTATGAACTGAATCTTGATAGGATTATTTGTGATATGTTATATGCTAATATGCATATACGACGGGTGACTATTGTGGAGTTTTATATATGAAA</gDNA_template>
            <first_frame> G  F  V  P  T  A  A  Q  D  S  L  N  G  D  V  F  S  T  R  T  F  S  I  F  R  S  Q  C  *  D  F  W  L  K  M  E  E  F  *  P  S  D  H  N  P  G  *  Q  T  *  *  Y  Y  *  T  *  G  L  Q  N  M  I  I  V  M  N  L  I  F  M  M  I  *  N  C  K  V  E  D  N  R  H  V  P  K  S  R  L  T  E  L  S  F  *  N  F  S  S  I  S  H  Q  V  S  S  W  R  D  F  M  K  G  G  K  K  :  V  K  K  G  E  I  R  P  P  K  L  K  T  E  D  P  N  K  S  Y  V  Q  R  P  V  K  R  G  *  N  T  C  T  S  T  S  F  V  S  V  I  F  K  A  C  I  N  L  Y  P  *  L  T  *  L  F  C  S  K  I  Y  L  A  P  Y  F  R  C  I  F  S  *  T  S  T  F  I  Y  F  I  *  H  R  F  L  F  M  N  *  I  L  I  G  L  F  V  I  C  Y  M  L  I  C  I  Y  D  G  *  L  L  W  S  F  I  Y  E  </first_frame>
            <second_frame>  D  L  C  Q  L  L  R  K  I  H  *  M  E  M  C  S  L  P  E  L  F  P  F  S  G  L  N  A  E  T  S  G  *  R  W  R  N  S  N  H  P  T  T  I  P  G  D  K  H  D  N  I  I  E  P  K  V  F  R  T  *  *  L  L  *  T  *  S  S  *  *  Y  E  I  V  K  L  K  T  T  D  M  F  Q  N  L  D  L  L  N  *  V  S  K  T  F  L  L  F  L  I  R  C  P  V  G  E  I  S  *  R  E  E  R  R :   L  R  K  E  K  F  D  L  Q  S  *  K  Q  K  I  P  I  N  L  T  F  N  D  L  *  N  E  A  K  T  H  V  R  Q  L  V  L  F  Q  *  Y  L  K  L  V  S  I  C  I  R  S  *  L  N  Y  S  A  A  K  Y  I  *  R  P  I  L  D  V  Y  L  A  R  Q  V  H  S  Y  I  S  F  D  T  D  F  C  L  *  T  E  S  *  *  D  Y  L  *  Y  V  I  C  *  Y  A  Y  T  T  G  D  Y  C  G  V  L  Y  M  K </second_frame>
            <third_frame>   I  C  A  N  C  C  A  R  F  I  K  W  R  C  V  L  Y  Q  N  F  F  H  F  Q  V  S  M  L  R  L  L  V  K  D  G  G  I  L  T  I  R  P  Q  S  R  V  T  N  M  I  I  L  L  N  L  R  S  S  E  H  D  N  C  Y  E  P  N  L  H  D  D  M  K  L  *  S  *  R  Q  P  T  C  S  K  I  *  T  Y  *  I  E  F  L  K  L  F  F  Y  F  S  S  G  V  Q  L  E  R  F  H  E  G  R  K  E   : G  *  E  R  R  N  S  T  S  K  V  E  N  R  R  S  Q  *  I  L  R  S  T  T  C  E  T  R  L  K  H  M  Y  V  N  *  F  C  F  S  D  I  *  S  L  Y  Q  F  V  S  V  A  N  L  I  I  L  Q  Q  N  I  F  S  A  L  F  *  M  Y  I  *  L  D  K  Y  I  H  I  F  H  L  T  Q  I  S  V  Y  E  L  N  L  D  R  I  I  C  D  M  L  Y  A  N  M  H  I  R  R  V  T  I  V  E  F  Y  I  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82576" stop="82352"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICANCCARFIKWRCVLYQNFFHFQVSMLRLLVKDGGILTIRPQSRVTNMIILLNLRSSEHDNCYEPNLHDDMKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="84186" e_stop="83598"/>
            <exon e_start="83520" e_stop="83413"/>
            <exon e_start="82272" e_stop="82234"/>
            <exon e_start="82111" e_stop="81763"/>
            <exon e_start="81188" e_stop="81172"/>
            <exon e_start="80612" e_stop="80475"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="0.995"/>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.907" e_score="0.974"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.957"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.882"/>
          <exon-only e_score="0.514"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="84186" e_stop="83598" e_length="589"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="83597" i_stop="83521" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83520" e_stop="83413" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83412" i_stop="82273" i_length="1140"/>
          </intron>
          <exon e_serial="3" e_score="0.974">
            <gDNA_exon_boundary e_start="82272" e_stop="82234" e_length="39"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.907">
            <gDNA_intron_boundary i_start="82233" i_stop="82112" i_length="122"/>
          </intron>
          <exon e_serial="4" e_score="0.957">
            <gDNA_exon_boundary e_start="82111" e_stop="81763" e_length="349"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81762" i_stop="81189" i_length="574"/>
          </intron>
          <exon e_serial="5" e_score="0.882">
            <gDNA_exon_boundary e_start="81188" e_stop="81172" e_length="17"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81171" i_stop="80613" i_length="559"/>
          </intron>
          <exon e_serial="6" e_score="0.514">
            <gDNA_exon_boundary e_start="80612" e_stop="80475" e_length="138"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84186" stop="83598"/>
              <exon start="83520" stop="83413"/>
              <exon start="82272" stop="82234"/>
              <exon start="82111" stop="81763"/>
              <exon start="81188" stop="81172"/>
              <exon start="80612" stop="80475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAGGTAATTCTGTTTAGTAGGCTCTTCTGCAATGTCTTCTCATCAGATTATCCAACTCGAATGTCTATGATTAACTGGAATTGTTGTCCCTGGATTTAAAATGGGGAATTTTCTTCCTGATTTTATCTGTGGCTTTGGTTGGCCTCTTTTTTCTTACATTGAGAACCGTGTTAATCATTGCCCAACCACCTTGAACTGTGCTTATATGGCACCTTGATTTTCTCCAAGCAACTAGAGTTGTTTTGGACTGTCTCTCACCTATCTGTTAGAAAACTTTTGTTGAATTCCTCATGTTGTCTACCCCAAAGGTTGAGATAAGGGAATGTTTGATAGTAGTTAATTGAGCATTTATGAAATCCATGTTACCATGAAATTGAAAATTAGTTTTCTTAATTTGAGATGGTTGATTTCTTGACTAATAGGGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTGAAAGAAATTTTAACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGAGG : ATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACTAGAGAAAACAGG : GTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAG : GTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTTTAGATGTATATTTAGCTAGACAAGTACATTCATATATTTCATTTGACACAGATTTCTGTTTATGAACTGAATCTTGATAGGATTATTTGTGATATGTTATATGCTAATATGCATATACGACGGGTGACTATTGTGGAGTTTTATATATGAAA : AAAAAAGATAAAAAAAA : AAAAAGATATATGGGGGAAAAAAGACAACCTGCATCCAAGTGTCTTCTATATGCCGTTCAGGTGAATTTTCAGGCGATGAAACTGGCGGAATTGGGTGGATAAGTTTTGGAACCACAACAAGATCTCTACCCAGTACT</gDNA_template>
            <first_frame> G  R  S  S  L  R  K  I  L  L  V  N  *  N  H  *  L  L  R  *  F  C  L  V  G  S  S  A  M  S  S  H  Q  I  I  Q  L  E  C  L  *  L  T  G  I  V  V  P  G  F  K  M  G  N  F  L  P  D  F  I  C  G  F  G  W  P  L  F  S  Y  I  E  N  R  V  N  H  C  P  T  T  L  N  C  A  Y  M  A  P  *  F  S  P  S  N  *  S  C  F  G  L  S  L  T  Y  L  L  E  N  F  C  *  I  P  H  V  V  Y  P  K  G  *  D  K  G  M  F  D  S  S  *  L  S  I  Y  E  I  H  V  T  M  K  L  K  I  S  F  L  N  L  R  W  L  I  S  *  L  I  G  K  V  R  P  R  A  *  A  I  R  R  I  P  A  *  A  E  V  E  G  E  R  N  F  N  G  P  R  M  E  E  E  K  N  G  N  E   : D  I  G  R  G  R  S  L  E  E  R  *  G  R  N  K  R  V  V  E  K  K  A  *  A  *  R  A  V  G  R  N  *  R  K  Q   : G  V  Q  L  E  R  F  H  E  G  R  K  E   : G  *  E  R  R  N  S  T  S  K  V  E  N  R  R  S  Q  *  I  L  R  S  T  T  C  E  T  R  L  K  H  M  Y  V  N  *  F  C  F  S  D  I  *  S  L  Y  Q  F  V  S  V  A  N  L  I  I  L  Q  Q  N  I  F  S  A  L  F  *  M  Y  I  *  L  D  K  Y  I  H  I  F  H  L  T  Q  I  S  V  Y  E  L  N  L  D  R  I  I  C  D  M  L  Y  A  N  M  H  I  R  R  V  T  I  V  E  F  Y  I  *  K :   K  K  I  K  K   : K  K  D  I  W  G  K  K  D  N  L  H  P  S  V  F  Y  M  P  F  R  *  I  F  R  R  *  N  W  R  N  W  V  D  K  F  W  N  H  N  K  I  S  T  Q  Y  </first_frame>
            <second_frame>  E  E  A  A  *  E  R  Y  C  *  *  I  E  I  I  S  Y  *  G  N  S  V  *  *  A  L  L  Q  C  L  L  I  R  L  S  N  S  N  V  Y  D  *  L  E  L  L  S  L  D  L  K  W  G  I  F  F  L  I  L  S  V  A  L  V  G  L  F  F  L  T  L  R  T  V  L  I  I  A  Q  P  P  *  T  V  L  I  W  H  L  D  F  L  Q  A  T  R  V  V  L  D  C  L  S  P  I  C  *  K  T  F  V  E  F  L  M  L  S  T  P  K  V  E  I  R  E  C  L  I  V  V  N  *  A  F  M  K  S  M  L  P  *  N  *  K  L  V  F  L  I  *  D  G  *  F  L  D  *  *  G  K  F  D  Q  E  H  E  Q  S  E  E  F  Q  H  K  L  K  L  K  V  K  E  I  L  T  D  Q  E  W  R  R  R  K  M  A  M  R  :  I  S  E  E  E  G  R  L  K  K  D  E  E  E  T  K  E  L  W  K  R  K  R  E  H  E  E  Q  W  E  G  T  R  E  N  R  :  V  S  S  W  R  D  F  M  K  G  G  K  K  :  V  K  K  G  E  I  R  P  P  K  L  K  T  E  D  P  N  K  S  Y  V  Q  R  P  V  K  R  G  *  N  T  C  T  S  T  S  F  V  S  V  I  F  K  A  C  I  N  L  Y  P  *  L  T  *  L  F  C  S  K  I  Y  L  A  P  Y  F  R  C  I  F  S  *  T  S  T  F  I  Y  F  I  *  H  R  F  L  F  M  N  *  I  L  I  G  L  F  V  I  C  Y  M  L  I  C  I  Y  D  G  *  L  L  W  S  F  I  Y  E   : K  K  R  *  K  K  :  K  K  I  Y  G  G  K  K  T  T  C  I  Q  V  S  S  I  C  R  S  G  E  F  S  G  D  E  T  G  G  I  G  W  I  S  F  G  T  T  T  R  S  L  P  S  T </second_frame>
            <third_frame>   K  K  Q  L  K  K  D  T  A  S  K  L  K  S  L  V  T  E  V  I  L  F  S  R  L  F  C  N  V  F  S  S  D  Y  P  T  R  M  S  M  I  N  W  N  C  C  P  W  I  *  N  G  E  F  S  S  *  F  Y  L  W  L  W  L  A  S  F  F  L  H  *  E  P  C  *  S  L  P  N  H  L  E  L  C  L  Y  G  T  L  I  F  S  K  Q  L  E  L  F  W  T  V  S  H  L  S  V  R  K  L  L  L  N  S  S  C  C  L  P  Q  R  L  R  *  G  N  V  *  *  *  L  I  E  H  L  *  N  P  C  Y  H  E  I  E  N  *  F  S  *  F  E  M  V  D  F  L  T  N  R  E  S  S  T  K  S  M  S  N  Q  K  N  S  S  I  S  *  S  *  R  *  K  K  F  *  R  T  K  N  G  G  G  E  K  W  Q  *  G :   Y  R  K  R  K  V  A  *  R  K  M  R  K  K  Q  K  S  C  G  K  E  S  V  S  M  K  S  S  G  K  E  L  E  K  T  G :   C  P  V  G  E  I  S  *  R  E  E  R  R :   L  R  K  E  K  F  D  L  Q  S  *  K  Q  K  I  P  I  N  L  T  F  N  D  L  *  N  E  A  K  T  H  V  R  Q  L  V  L  F  Q  *  Y  L  K  L  V  S  I  C  I  R  S  *  L  N  Y  S  A  A  K  Y  I  *  R  P  I  L  D  V  Y  L  A  R  Q  V  H  S  Y  I  S  F  D  T  D  F  C  L  *  T  E  S  *  *  D  Y  L  *  Y  V  I  C  *  Y  A  Y  T  T  G  D  Y  C  G  V  L  Y  M  K  :  K  K  D  K  K  K :   K  R  Y  M  G  E  K  R  Q  P  A  S  K  C  L  L  Y  A  V  Q  V  N  F  Q  A  M  K  L  A  E  L  G  G  *  V  L  E  P  Q  Q  D  L  Y  P  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83711" stop="83598"/>
                    <exon start="83520" stop="83413"/>
                    <exon start="82272" stop="82234"/>
                    <exon start="82111" stop="82025"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKFDQEHEQSEEFQHKLKLKVKEILTDQEWRRRKMAMRISEEEGRLKKDEEETKELWKRKREHEEQWEGTRENRVSSWRDFMKGGKKVKKGEIRPPKLKTEDPNKSYVQRPVKRG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="97732" PGL_stop="104019"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97732" e_stop="97975"/>
            <exon e_start="99904" e_stop="100151"/>
            <exon e_start="103433" e_stop="104019"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97732" e_stop="97975" e_length="244"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.951">
            <gDNA_intron_boundary i_start="97976" i_stop="99903" i_length="1928"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99904" e_stop="100151" e_length="248"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="100152" i_stop="103432" i_length="3281"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="103433" e_stop="104019" e_length="587"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97732" stop="97975"/>
              <exon start="99904" stop="100151"/>
              <exon start="103433" stop="104019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328666" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAATTCTGTAAGGAAGAAAAAAATGAGACGTCCCGGCGGCGGACATTCCGGCGGTGGGCATTACGGTGGTGCTGATGCCGGCGCCGATGCTACGTATAACTCCGGCCATCAAACGATGCAACATCAACATCAACAGCAACAACAGCAGCAGATCAAGTCGGAACATCATCAACAATGGAGATGGGAACGAGAGAGCCCGAAATTACCTACAAATTCTATGTCTCCGAACATGTATCCTGAAG : GCCAGGGGAGTGAAGCATCTAGATCCTACTACCAGGGCCAGAGGACTGATCCAAGGTTGGCATTAGAGAATCAAGGTGGCAAGAATCCTAGAGCACTGCCTCGTGAAGAAGGCATGGATATTGGTTATGAAGATAAGCCTGTACAGCAGACTTTGGAAGGTCTTGAAAAAAAATTCCTTGATGATATAATGAAACTGACCAAGGAGCAAAATGATGCAGAGGATGCTGAAAATTCTAGGCATAGGGAG : CGGATAAATGCAATCAACACACAATATCAAGAACAGCTAGTTGCCCTTCGTGCCCGGCAAGCTAATCACAGAGATGAAGTCCTTCGAAGGGAGTGTCATGCCAGAAAACAACAGTATGAGCAAGTTGCTTTGGACAACTATCGACACAGCAACATGAGCACTAGCAATGCTCGTGGATATGTGGGAAACTCTCCAGCAGGAGAACGACAAGTTGCCTACAACTCTCCAGCAGGAGAACGACAAGCAGCCTATAATGCTGATAGTTACGACTCTTACAGGGAGAATGCTCGATATATTGGCAACAGCGGAAGAGATCACGGATATGAACCTAGAGTACAATACCCAGGCGGTCGCGTCTATGAAACTGGTTCACGCTATTATTGAATAACTGCTTAGAATAGTATTGAATCTTTCGTTTAGTTTGCTTTGACTAGGTGGTCGCGTCTATGACACTGGTTCACGCTACTCGTCTTTATAGCTTTTATCAGATTGGATAAAAGAGTCACATATGTACTTTACTTTTTTCTGAATGATTCATGATCTTGGCATGGACTAGTGATGAAGTTTGATCTGTTACTGTTCCTAAA</gDNA_template>
            <first_frame> Q  N  S  V  R  K  K  K  M  R  R  P  G  G  G  H  S  G  G  G  H  Y  G  G  A  D  A  G  A  D  A  T  Y  N  S  G  H  Q  T  M  Q  H  Q  H  Q  Q  Q  Q  Q  Q  Q  I  K  S  E  H  H  Q  Q  W  R  W  E  R  E  S  P  K  L  P  T  N  S  M  S  P  N  M  Y  P  E   : G  Q  G  S  E  A  S  R  S  Y  Y  Q  G  Q  R  T  D  P  R  L  A  L  E  N  Q  G  G  K  N  P  R  A  L  P  R  E  E  G  M  D  I  G  Y  E  D  K  P  V  Q  Q  T  L  E  G  L  E  K  K  F  L  D  D  I  M  K  L  T  K  E  Q  N  D  A  E  D  A  E  N  S  R  H  R  E  :  R  I  N  A  I  N  T  Q  Y  Q  E  Q  L  V  A  L  R  A  R  Q  A  N  H  R  D  E  V  L  R  R  E  C  H  A  R  K  Q  Q  Y  E  Q  V  A  L  D  N  Y  R  H  S  N  M  S  T  S  N  A  R  G  Y  V  G  N  S  P  A  G  E  R  Q  V  A  Y  N  S  P  A  G  E  R  Q  A  A  Y  N  A  D  S  Y  D  S  Y  R  E  N  A  R  Y  I  G  N  S  G  R  D  H  G  Y  E  P  R  V  Q  Y  P  G  G  R  V  Y  E  T  G  S  R  Y  Y  *  I  T  A  *  N  S  I  E  S  F  V  *  F  A  L  T  R  W  S  R  L  *  H  W  F  T  L  L  V  F  I  A  F  I  R  L  D  K  R  V  T  Y  V  L  Y  F  F  L  N  D  S  *  S  W  H  G  L  V  M  K  F  D  L  L  L  F  L   </first_frame>
            <second_frame>  K  I  L  *  G  R  K  K  *  D  V  P  A  A  D  I  P  A  V  G  I  T  V  V  L  M  P  A  P  M  L  R  I  T  P  A  I  K  R  C  N  I  N  I  N  S  N  N  S  S  R  S  S  R  N  I  I  N  N  G  D  G  N  E  R  A  R  N  Y  L  Q  I  L  C  L  R  T  C  I  L  K  :  A  R  G  V  K  H  L  D  P  T  T  R  A  R  G  L  I  Q  G  W  H  *  R  I  K  V  A  R  I  L  E  H  C  L  V  K  K  A  W  I  L  V  M  K  I  S  L  Y  S  R  L  W  K  V  L  K  K  N  S  L  M  I  *  *  N  *  P  R  S  K  M  M  Q  R  M  L  K  I  L  G  I  G  S :   G  *  M  Q  S  T  H  N  I  K  N  S  *  L  P  F  V  P  G  K  L  I  T  E  M  K  S  F  E  G  S  V  M  P  E  N  N  S  M  S  K  L  L  W  T  T  I  D  T  A  T  *  A  L  A  M  L  V  D  M  W  E  T  L  Q  Q  E  N  D  K  L  P  T  T  L  Q  Q  E  N  D  K  Q  P  I  M  L  I  V  T  T  L  T  G  R  M  L  D  I  L  A  T  A  E  E  I  T  D  M  N  L  E  Y  N  T  Q  A  V  A  S  M  K  L  V  H  A  I  I  E  *  L  L  R  I  V  L  N  L  S  F  S  L  L  *  L  G  G  R  V  Y  D  T  G  S  R  Y  S  S  L  *  L  L  S  D  W  I  K  E  S  H  M  Y  F  T  F  F  *  M  I  H  D  L  G  M  D  *  *  *  S  L  I  C  Y  C  S  *  </second_frame>
            <third_frame>   K  F  C  K  E  E  K  N  E  T  S  R  R  R  T  F  R  R  W  A  L  R  W  C  *  C  R  R  R  C  Y  V  *  L  R  P  S  N  D  A  T  S  T  S  T  A  T  T  A  A  D  Q  V  G  T  S  S  T  M  E  M  G  T  R  E  P  E  I  T  Y  K  F  Y  V  S  E  H  V  S  *  R :   P  G  E  *  S  I  *  I  L  L  P  G  P  E  D  *  S  K  V  G  I  R  E  S  R  W  Q  E  S  *  S  T  A  S  *  R  R  H  G  Y  W  L  *  R  *  A  C  T  A  D  F  G  R  S  *  K  K  I  P  *  *  Y  N  E  T  D  Q  G  A  K  *  C  R  G  C  *  K  F  *  A  *  G   : A  D  K  C  N  Q  H  T  I  S  R  T  A  S  C  P  S  C  P  A  S  *  S  Q  R  *  S  P  S  K  G  V  S  C  Q  K  T  T  V  *  A  S  C  F  G  Q  L  S  T  Q  Q  H  E  H  *  Q  C  S  W  I  C  G  K  L  S  S  R  R  T  T  S  C  L  Q  L  S  S  R  R  T  T  S  S  L  *  C  *  *  L  R  L  L  Q  G  E  C  S  I  Y  W  Q  Q  R  K  R  S  R  I  *  T  *  S  T  I  P  R  R  S  R  L  *  N  W  F  T  L  L  L  N  N  C  L  E  *  Y  *  I  F  R  L  V  C  F  D  *  V  V  A  S  M  T  L  V  H  A  T  R  L  Y  S  F  Y  Q  I  G  *  K  S  H  I  C  T  L  L  F  S  E  *  F  M  I  L  A  W  T  S  D  E  V  *  S  V  T  V  P  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97732" stop="97975"/>
                    <exon start="99904" stop="100151"/>
                    <exon start="103433" stop="103816"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNSVRKKKMRRPGGGHSGGGHYGGADAGADATYNSGHQTMQHQHQQQQQQQIKSEHHQQWRWERESPKLPTNSMSPNMYPEGQGSEASRSYYQGQRTDPRLALENQGGKNPRALPREEGMDIGYEDKPVQQTLEGLEKKFLDDIMKLTKEQNDAEDAENSRHRERINAINTQYQEQLVALRARQANHRDEVLRRECHARKQQYEQVALDNYRHSNMSTSNARGYVGNSPAGERQVAYNSPAGERQAAYNADSYDSYRENARYIGNSGRDHGYEPRVQYPGGRVYETGSRYY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 32 chains have been computed
$ 
$ memory statistics:
$ 259104 bytes spliced alignments in total
$ 24 spliced alignments have been stored
$ 10796 bytes was the average size of a spliced alignment
$ 23336 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1666 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 33 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 06:08:33
-->
